Query 046549
Match_columns 250
No_of_seqs 131 out of 184
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 23:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_I DNA-directed RNA polyme 82.7 0.93 3.2E-05 35.1 3.3 44 12-56 66-112 (113)
2 1qyp_A RNA polymerase II; tran 82.6 1.2 4E-05 30.5 3.4 38 19-56 15-55 (57)
3 1tfi_A Transcriptional elongat 82.4 1.1 3.6E-05 30.9 3.1 38 18-55 8-48 (50)
4 1twf_I B12.6, DNA-directed RNA 69.6 4.2 0.00014 31.8 3.7 45 12-57 66-113 (122)
5 2fiy_A Protein FDHE homolog; F 65.6 2.6 8.8E-05 38.1 2.0 35 19-54 222-263 (309)
6 3qt1_I DNA-directed RNA polyme 57.6 2.2 7.4E-05 34.5 0.0 43 13-56 87-132 (133)
7 4hc9_A Trans-acting T-cell-spe 56.8 13 0.00045 29.2 4.4 47 16-66 56-102 (115)
8 4gat_A Nitrogen regulatory pro 54.2 12 0.00041 27.2 3.5 51 10-65 1-51 (66)
9 3dfx_A Trans-acting T-cell-spe 47.3 17 0.00058 26.3 3.3 46 17-66 5-50 (63)
10 3nw0_A Non-structural maintena 45.9 3.6 0.00012 35.4 -0.5 38 19-57 193-230 (238)
11 1gnf_A Transcription factor GA 45.2 14 0.00046 25.2 2.4 42 18-63 3-44 (46)
12 3cw1_L U1 small nuclear ribonu 40.8 7.8 0.00027 29.2 0.7 17 43-59 2-18 (77)
13 2jr6_A UPF0434 protein NMA0874 35.9 18 0.00061 26.2 2.0 30 18-54 7-36 (68)
14 2js4_A UPF0434 protein BB2007; 34.1 32 0.0011 25.0 3.1 31 18-55 7-37 (70)
15 2pk7_A Uncharacterized protein 33.3 19 0.00064 26.2 1.7 30 18-54 7-36 (69)
16 2jny_A Uncharacterized BCR; st 33.1 15 0.00051 26.7 1.1 36 10-54 3-38 (67)
17 2kae_A GATA-type transcription 32.2 4.8 0.00016 29.8 -1.6 48 16-66 5-52 (71)
18 1pft_A TFIIB, PFTFIIBN; N-term 30.5 28 0.00095 22.7 2.1 33 18-56 4-36 (50)
19 1z2q_A LM5-1; membrane protein 30.3 53 0.0018 23.7 3.7 32 15-55 17-48 (84)
20 2k2d_A Ring finger and CHY zin 30.1 19 0.00066 26.6 1.4 12 20-31 56-67 (79)
21 1k81_A EIF-2-beta, probable tr 29.3 18 0.00061 23.2 0.9 31 20-54 1-31 (36)
22 2zjr_Z 50S ribosomal protein L 27.9 29 0.00099 24.6 1.9 27 15-53 26-52 (60)
23 2kpi_A Uncharacterized protein 27.5 50 0.0017 22.9 3.0 34 10-54 3-38 (56)
24 1x4u_A Zinc finger, FYVE domai 27.3 44 0.0015 24.1 2.9 36 15-59 10-45 (84)
25 2hf1_A Tetraacyldisaccharide-1 26.8 18 0.00063 26.1 0.7 30 18-54 7-36 (68)
26 2yw8_A RUN and FYVE domain-con 26.8 35 0.0012 24.6 2.2 44 14-66 14-57 (82)
27 1wd2_A Ariadne-1 protein homol 25.8 51 0.0017 22.9 2.8 42 18-59 5-49 (60)
28 2gmg_A Hypothetical protein PF 25.0 34 0.0012 27.1 2.0 14 18-31 83-96 (105)
29 1y02_A CARP2, FYVE-ring finger 24.3 30 0.001 27.4 1.6 35 15-58 15-49 (120)
30 2con_A RUH-035 protein, NIN on 23.6 41 0.0014 25.2 2.1 47 8-69 4-50 (79)
31 2dar_A PDZ and LIM domain prot 23.5 86 0.0029 21.9 3.8 56 1-56 7-63 (90)
32 3t7l_A Zinc finger FYVE domain 23.3 79 0.0027 23.2 3.6 43 14-65 15-57 (90)
No 1
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=82.72 E-value=0.93 Score=35.14 Aligned_cols=44 Identities=23% Similarity=0.532 Sum_probs=27.8
Q ss_pred CCCCCcccccCCCCCCCCceeeeecccCCCCCc---cccccccccccc
Q 046549 12 PHFPESEQLKCPRCESTNTKFCYYNNYNLSQPR---HFCKNCRRYWTR 56 (250)
Q Consensus 12 p~~pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR---~fCk~CrRyWT~ 56 (250)
|.+|... .+||+|...+..|-..+-.....|- |.|..|..-|..
T Consensus 66 ~tlp~~~-~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 66 PTLPRSD-KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp SSSCBCC-SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred ccCCCcc-cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 3445443 8999999876554333333332232 889999999974
No 2
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=82.61 E-value=1.2 Score=30.48 Aligned_cols=38 Identities=18% Similarity=0.594 Sum_probs=25.6
Q ss_pred cccCCCCCCCCceeeeecccCCCCC---ccccccccccccc
Q 046549 19 QLKCPRCESTNTKFCYYNNYNLSQP---RHFCKNCRRYWTR 56 (250)
Q Consensus 19 ~~~CPRC~S~~TKFcYyNNy~~~QP---R~fCk~CrRyWT~ 56 (250)
.++||+|...+..|--.+-.....| .|.|..|.--|..
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 6889999984444333333333344 3899999999975
No 3
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=82.37 E-value=1.1 Score=30.85 Aligned_cols=38 Identities=18% Similarity=0.664 Sum_probs=28.7
Q ss_pred ccccCCCCCCCCceeeeecccCCCCCc---ccccccccccc
Q 046549 18 EQLKCPRCESTNTKFCYYNNYNLSQPR---HFCKNCRRYWT 55 (250)
Q Consensus 18 ~~~~CPRC~S~~TKFcYyNNy~~~QPR---~fCk~CrRyWT 55 (250)
....||+|...+.-|--.+..+...|- |.|..|..-|.
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 357899999888776666666555554 89999998885
No 4
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=69.59 E-value=4.2 Score=31.81 Aligned_cols=45 Identities=24% Similarity=0.607 Sum_probs=30.7
Q ss_pred CCCCCcccccCCCCCCCCceeeeecccCCCCCc---ccccccccccccC
Q 046549 12 PHFPESEQLKCPRCESTNTKFCYYNNYNLSQPR---HFCKNCRRYWTRG 57 (250)
Q Consensus 12 p~~pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR---~fCk~CrRyWT~G 57 (250)
|.+|.- ...||+|...+.-|-..+-..-..|- |.|..|.--|...
T Consensus 66 ~t~p~t-~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 66 PTLPRS-DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp TTSCCC-CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred cccccc-CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 344443 57899999876655544444444443 8999999999875
No 5
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.65 E-value=2.6 Score=38.08 Aligned_cols=35 Identities=23% Similarity=0.648 Sum_probs=25.4
Q ss_pred cccCCCCCCCCceeeeecccC-------CCCCccccccccccc
Q 046549 19 QLKCPRCESTNTKFCYYNNYN-------LSQPRHFCKNCRRYW 54 (250)
Q Consensus 19 ~~~CPRC~S~~TKFcYyNNy~-------~~QPR~fCk~CrRyW 54 (250)
..+||.|... .++-|+.--. ..---+.|..|+.|+
T Consensus 222 R~~C~~Cg~~-~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 222 RIKCSHCEES-KHLAYLSLEHDGQPAEKAVLRAETCPSCQGYL 263 (309)
T ss_dssp TTSCSSSCCC-SCCEEECCCC-CCCSTTCSEEEEEETTTTEEE
T ss_pred CcCCcCCCCC-CCeeEEEecCccccCCCcceEEEEcccccchH
Confidence 5789999998 4677775443 222238999999998
No 6
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=57.63 E-value=2.2 Score=34.46 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=0.0
Q ss_pred CCCCcccccCCCCCCCCceeeeecccCCCCC---ccccccccccccc
Q 046549 13 HFPESEQLKCPRCESTNTKFCYYNNYNLSQP---RHFCKNCRRYWTR 56 (250)
Q Consensus 13 ~~pe~~~~~CPRC~S~~TKFcYyNNy~~~QP---R~fCk~CrRyWT~ 56 (250)
.+|.. ...||+|...+.-|-..+-.....| -|.|..|.--|..
T Consensus 87 tlp~t-~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 87 TLPRS-DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp -----------------------------------------------
T ss_pred cCCcc-cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 34443 4799999987665433333333222 2889999999975
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=56.85 E-value=13 Score=29.16 Aligned_cols=47 Identities=17% Similarity=0.472 Sum_probs=34.5
Q ss_pred CcccccCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccCC
Q 046549 16 ESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRGGALRNIPIG 66 (250)
Q Consensus 16 e~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~GGtlRnVPVG 66 (250)
......|-.|....|-. .- .-+..+.+|-+|.-||..-|..|-+.+-
T Consensus 56 ~~~~~~C~~C~t~~tp~--WR--r~~~g~~lCNaCgl~~~~~~~~rp~~~~ 102 (115)
T 4hc9_A 56 RRAGTSCANCQTTTTTL--WR--RNANGDPVCNACGLYYKLHNINRPLTMK 102 (115)
T ss_dssp CCTTCCCTTTCCSCCSS--CE--ECTTSCEECHHHHHHHHHHSSCCCGGGC
T ss_pred ccccccCCCcCCCCcce--eE--ECCCCCCcchHHHHHHHHhCCCCCcccc
Confidence 35578999999887642 11 1123368999999999999998877663
No 8
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=54.15 E-value=12 Score=27.20 Aligned_cols=51 Identities=20% Similarity=0.471 Sum_probs=35.4
Q ss_pred CCCCCCCcccccCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 046549 10 MKPHFPESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRGGALRNIPI 65 (250)
Q Consensus 10 ~kp~~pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~GGtlRnVPV 65 (250)
|||..+ .....|-.|.+.+|-. .-. ... -..+|-+|.-||-.-|.+|-+..
T Consensus 1 ~~~~~~-~~~~~C~~C~t~~Tp~--WR~-gp~-G~~LCNaCGl~~~~~~~~RP~~~ 51 (66)
T 4gat_A 1 MKNGEQ-NGPTTCTNCFTQTTPL--WRR-NPE-GQPLCNACGLFLKLHGVVRPLSL 51 (66)
T ss_dssp CTTSCS-SSSCCCTTTCCCCCSS--CEE-ETT-TEEECHHHHHHHHHHCSCCCGGG
T ss_pred CCCCCC-CCCCCCCCCCCCCCCc--CCc-CCC-CCCccHHHHHHHHHcCCCCchhh
Confidence 455544 4689999999987751 111 112 22899999999999999877654
No 9
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=47.31 E-value=17 Score=26.26 Aligned_cols=46 Identities=17% Similarity=0.479 Sum_probs=32.8
Q ss_pred cccccCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccCC
Q 046549 17 SEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRGGALRNIPIG 66 (250)
Q Consensus 17 ~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~GGtlRnVPVG 66 (250)
.....|-.|...+|-. .-. -.....+|-+|.=||-+.|..|-+.+-
T Consensus 5 ~~~~~C~~C~tt~Tp~--WR~--gp~G~~LCNACGl~~~~~~~~RP~~~~ 50 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTL--WRR--NANGDPVCNACGLYYKLHNINRPLTMK 50 (63)
T ss_dssp CTTCCCTTTCCSCCSS--CCC--CTTSCCCCHHHHHHHHHHSSCCCGGGC
T ss_pred CCCCcCCCcCCCCCCc--cCC--CCCCCchhhHHHHHHHHcCCCCCcCcC
Confidence 4567899999887742 111 122338999999999999998877653
No 10
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=45.95 E-value=3.6 Score=35.44 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=29.8
Q ss_pred cccCCCCCCCCceeeeecccCCCCCcccccccccccccC
Q 046549 19 QLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRG 57 (250)
Q Consensus 19 ~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~G 57 (250)
...|+.|...=+..|+.+= -..+....|..|++.|+..
T Consensus 193 g~~C~~C~~~~H~~C~~~~-~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 193 GQSCETCGIRMHLPCVAKY-FQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CEECSSSCCEECHHHHHHH-TTTCSSCBCTTTCCBCCSC
T ss_pred CcccCccChHHHHHHHHHH-HHhCCCCCCCCCCCCCCCC
Confidence 5678888888888887554 3456678999999999865
No 11
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=45.24 E-value=14 Score=25.22 Aligned_cols=42 Identities=24% Similarity=0.522 Sum_probs=30.0
Q ss_pred ccccCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccc
Q 046549 18 EQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRGGALRNI 63 (250)
Q Consensus 18 ~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~GGtlRnV 63 (250)
+...|..|...+|-. +-. -.....+|-+|.-||-+.|..|-+
T Consensus 3 ~~~~C~~C~tt~Tp~--WR~--gp~G~~LCNaCGl~~k~~~~~RP~ 44 (46)
T 1gnf_A 3 EARECVNCGATATPL--WRR--DRTGHYLCNACGLYHKMNGQNRPL 44 (46)
T ss_dssp CSCCCTTTCCCCCSS--CBC--CTTCCCBCSHHHHHHHHTCSCCCC
T ss_pred CCCCCCCcCCCCCCc--Ccc--CCCCCccchHHHHHHHHcCCCCCC
Confidence 467899999887642 111 122338999999999999998744
No 12
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=40.81 E-value=7.8 Score=29.17 Aligned_cols=17 Identities=29% Similarity=0.939 Sum_probs=15.1
Q ss_pred CcccccccccccccCcc
Q 046549 43 PRHFCKNCRRYWTRGGA 59 (250)
Q Consensus 43 PR~fCk~CrRyWT~GGt 59 (250)
|||||.-|..|.|+.-.
T Consensus 2 PkYyCdYCd~~lt~Ds~ 18 (77)
T 3cw1_L 2 PKFYCDYCDTYLTHDSP 18 (77)
T ss_pred CCcccccCCceecCCCH
Confidence 89999999999988754
No 13
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=35.94 E-value=18 Score=26.20 Aligned_cols=30 Identities=13% Similarity=0.421 Sum_probs=20.6
Q ss_pred ccccCCCCCCCCceeeeecccCCCCCccccccccccc
Q 046549 18 EQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYW 54 (250)
Q Consensus 18 ~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyW 54 (250)
+.+.||.|... .-| ........|+.|++-+
T Consensus 7 ~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGR---LEY----HQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred hheECCCCCCc---CeE----eCCCCEEEcCCCCcEe
Confidence 57999999963 222 2234668899998654
No 14
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=34.15 E-value=32 Score=24.98 Aligned_cols=31 Identities=23% Similarity=0.551 Sum_probs=21.4
Q ss_pred ccccCCCCCCCCceeeeecccCCCCCcccccccccccc
Q 046549 18 EQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWT 55 (250)
Q Consensus 18 ~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT 55 (250)
+.+.||.|... .-| ........|+.|++-+-
T Consensus 7 ~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 7 DILVCPVCKGR---LEF----QRAQAELVCNADRLAFP 37 (70)
T ss_dssp CCCBCTTTCCB---EEE----ETTTTEEEETTTTEEEE
T ss_pred hheECCCCCCc---CEE----eCCCCEEEcCCCCceec
Confidence 57999999983 222 22356688999987553
No 15
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=33.31 E-value=19 Score=26.15 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=20.9
Q ss_pred ccccCCCCCCCCceeeeecccCCCCCccccccccccc
Q 046549 18 EQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYW 54 (250)
Q Consensus 18 ~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyW 54 (250)
+.+.||.|...-. |........|+.|++-+
T Consensus 7 eiL~CP~ck~~L~-------~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGPLK-------LSADKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCCCCE-------ECTTSSEEEETTTTEEE
T ss_pred hheeCCCCCCcCe-------EeCCCCEEEcCCCCcEe
Confidence 5789999996422 22335668899998654
No 16
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=33.07 E-value=15 Score=26.65 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=23.5
Q ss_pred CCCCCCCcccccCCCCCCCCceeeeecccCCCCCccccccccccc
Q 046549 10 MKPHFPESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYW 54 (250)
Q Consensus 10 ~kp~~pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyW 54 (250)
|++.+- +.+.||.|... .-| ....-...|+.|++-+
T Consensus 3 md~~LL--eiL~CP~ck~~---L~~----~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 3 LDPQLL--EVLACPKDKGP---LRY----LESEQLLVNERLNLAY 38 (67)
T ss_dssp SCGGGT--CCCBCTTTCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred CCHHHH--HHhCCCCCCCc---CeE----eCCCCEEEcCCCCccc
Confidence 444443 58999999983 222 2235668899998755
No 17
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=32.16 E-value=4.8 Score=29.78 Aligned_cols=48 Identities=19% Similarity=0.383 Sum_probs=33.1
Q ss_pred CcccccCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccCC
Q 046549 16 ESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRGGALRNIPIG 66 (250)
Q Consensus 16 e~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~GGtlRnVPVG 66 (250)
..+...|-.|...+|- .+-.-..... .+|-+|.=||.+.|+.|-+..-
T Consensus 5 ~~~~~~C~nC~tt~Tp--~WRrg~~~~g-~LCNACGl~~~~~~~~RP~~~~ 52 (71)
T 2kae_A 5 NKKSFQCSNCSVTETI--RWRNIRSKEG-IQCNACFIYQRKYNKTRPVTAV 52 (71)
T ss_dssp ---CCCCSSSCCSCCS--SCCCCSSSSC-CCSSHHHHHHHHHHSCCCTHHH
T ss_pred CCCCCcCCccCCCCCC--ccccCCCCCC-ccchHHHHHHHHhCCCCCcccc
Confidence 4567999999999875 2222111222 8999999999999998877654
No 18
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=30.51 E-value=28 Score=22.74 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=21.8
Q ss_pred ccccCCCCCCCCceeeeecccCCCCCccccccccccccc
Q 046549 18 EQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTR 56 (250)
Q Consensus 18 ~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~ 56 (250)
..+.||.|.+.+-.| ...+-...|..|..-+..
T Consensus 4 ~~~~CP~C~~~~l~~------d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 4 KQKVCPACESAELIY------DPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCCSCTTTSCCCEEE------ETTTTEEEESSSCCBCCC
T ss_pred ccEeCcCCCCcceEE------cCCCCeEECcccCCcccc
Confidence 357899998754332 234556899999765543
No 19
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=30.31 E-value=53 Score=23.71 Aligned_cols=32 Identities=25% Similarity=0.655 Sum_probs=22.3
Q ss_pred CCcccccCCCCCCCCceeeeecccCCCCCcccccccccccc
Q 046549 15 PESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWT 55 (250)
Q Consensus 15 pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT 55 (250)
|+.+...|..|... | ++..-||-|+.|.+-.=
T Consensus 17 pd~~~~~C~~C~~~---F------s~~~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 17 EDEDAPACNGCGCV---F------TTTVRRHHCRNCGYVLC 48 (84)
T ss_dssp CTTTCCBCTTTCCB---C------CTTSCCEECTTTCCEEC
T ss_pred cCCCCCCCcCcCCc---c------ccchhcccccCCCcEEC
Confidence 45667889988875 3 33467898888876543
No 20
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=30.11 E-value=19 Score=26.60 Aligned_cols=12 Identities=58% Similarity=0.993 Sum_probs=10.7
Q ss_pred ccCCCCCCCCce
Q 046549 20 LKCPRCESTNTK 31 (250)
Q Consensus 20 ~~CPRC~S~~TK 31 (250)
.+||.|.|.||+
T Consensus 56 ~kC~~C~SyNTr 67 (79)
T 2k2d_A 56 MKCKICESYNTA 67 (79)
T ss_dssp CCCTTTSCCCEE
T ss_pred ccCcCCCCcCeE
Confidence 489999999998
No 21
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=29.34 E-value=18 Score=23.21 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=20.7
Q ss_pred ccCCCCCCCCceeeeecccCCCCCccccccccccc
Q 046549 20 LKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYW 54 (250)
Q Consensus 20 ~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyW 54 (250)
+.||-|.+.+|.+--= ...--..|++|..-+
T Consensus 1 VlC~~C~~peT~l~~~----~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 1 VICRECGKPDTKIIKE----GRVHLLKCMACGAIR 31 (36)
T ss_dssp CCCSSSCSCEEEEEEE----TTEEEEEEETTTEEE
T ss_pred CCCcCCCCCCcEEEEe----CCcEEEEhhcCCCcc
Confidence 4799999999996541 112225688886544
No 22
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=27.91 E-value=29 Score=24.62 Aligned_cols=27 Identities=33% Similarity=0.907 Sum_probs=21.5
Q ss_pred CCcccccCCCCCCCCceeeeecccCCCCCcccccccccc
Q 046549 15 PESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRY 53 (250)
Q Consensus 15 pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRy 53 (250)
..+....||.|... + .|.+.|..|.-|
T Consensus 26 ~~p~l~~c~~cG~~--~----------~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 26 TAPNLTECPQCHGK--K----------LSHHICPNCGYY 52 (60)
T ss_dssp CCCCCEECTTTCCE--E----------CTTBCCTTTCBS
T ss_pred cCCCceECCCCCCE--e----------CCceEcCCCCcC
Confidence 34568899999865 3 799999999966
No 23
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=27.53 E-value=50 Score=22.88 Aligned_cols=34 Identities=21% Similarity=0.612 Sum_probs=22.3
Q ss_pred CCCCCCCcccccCCCCCCCCceeeeecccCCCCCccccc--cccccc
Q 046549 10 MKPHFPESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCK--NCRRYW 54 (250)
Q Consensus 10 ~kp~~pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk--~CrRyW 54 (250)
|++.+- +.+.||.|... . -|.. ....|+ .|++-+
T Consensus 3 ~d~~lL--~iL~CP~c~~~---L-~~~~-----~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 3 LEAGLL--EILACPACHAP---L-EERD-----AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSCT--TSCCCSSSCSC---E-EEET-----TEEEECSSSCCCEE
T ss_pred CCHHHH--hheeCCCCCCc---c-eecC-----CEEEcCCcCCCcEE
Confidence 344443 58999999984 2 2232 667899 897654
No 24
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.35 E-value=44 Score=24.09 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=25.5
Q ss_pred CCcccccCCCCCCCCceeeeecccCCCCCcccccccccccccCcc
Q 046549 15 PESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRGGA 59 (250)
Q Consensus 15 pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~GGt 59 (250)
|+.+...|..|... | ++..-||-|+.|.+-.=..=.
T Consensus 10 pd~~~~~C~~C~~~---F------~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 10 PTNNFGNCTGCSAT---F------SVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp SCCCCSSCSSSCCC---C------CSSSCCEECSSSCCEECTTTS
T ss_pred cCCCCCcCcCcCCc---c------ccchhhhhhcCCCcEEChhhc
Confidence 55678899999875 3 334788999999876654433
No 25
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.85 E-value=18 Score=26.11 Aligned_cols=30 Identities=30% Similarity=0.662 Sum_probs=20.5
Q ss_pred ccccCCCCCCCCceeeeecccCCCCCccccccccccc
Q 046549 18 EQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYW 54 (250)
Q Consensus 18 ~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyW 54 (250)
+.+.||.|... .-| ........|+.|++-+
T Consensus 7 ~iL~CP~ck~~---L~~----~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 7 EILVCPLCKGP---LVF----DKSKDELICKGDRLAF 36 (68)
T ss_dssp EECBCTTTCCB---CEE----ETTTTEEEETTTTEEE
T ss_pred hheECCCCCCc---CeE----eCCCCEEEcCCCCcEe
Confidence 57899999963 222 2235668899998654
No 26
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=26.84 E-value=35 Score=24.58 Aligned_cols=44 Identities=23% Similarity=0.681 Sum_probs=28.2
Q ss_pred CCCcccccCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccCC
Q 046549 14 FPESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRGGALRNIPIG 66 (250)
Q Consensus 14 ~pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~GGtlRnVPVG 66 (250)
.|+.+...|..|... | ++..-||-|+.|.+-.=..=.-..+|+-
T Consensus 14 ~~d~~~~~C~~C~~~---F------s~~~RrHHCR~CG~v~C~~Cs~~~~~l~ 57 (82)
T 2yw8_A 14 LKDDEATHCRQCEKE---F------SISRRKHHCRNCGHIFCNTCSSNELALP 57 (82)
T ss_dssp -CCCCCCBCTTTCCB---C------BTTBCCEECTTTCCEECSGGGCEEECCT
T ss_pred ccCccCCcccCcCCc---c------cCccccccCCCCCCEEChHHhCCeeecC
Confidence 356677889998874 3 3567889999888765544333334443
No 27
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.75 E-value=51 Score=22.91 Aligned_cols=42 Identities=26% Similarity=0.499 Sum_probs=30.0
Q ss_pred ccccCCCCCCCCceeeeecccCCCC---CcccccccccccccCcc
Q 046549 18 EQLKCPRCESTNTKFCYYNNYNLSQ---PRHFCKNCRRYWTRGGA 59 (250)
Q Consensus 18 ~~~~CPRC~S~~TKFcYyNNy~~~Q---PR~fCk~CrRyWT~GGt 59 (250)
...+||.|...-.|----|.-.-.. --+||-.|.+-|..-|.
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~ 49 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS 49 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGT
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCC
Confidence 4689999999888866544333332 35899999998986654
No 28
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=25.01 E-value=34 Score=27.08 Aligned_cols=14 Identities=29% Similarity=0.745 Sum_probs=10.4
Q ss_pred ccccCCCCCCCCce
Q 046549 18 EQLKCPRCESTNTK 31 (250)
Q Consensus 18 ~~~~CPRC~S~~TK 31 (250)
.+..||+|.|.+..
T Consensus 83 kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 83 IPSRCPKCKSEWIE 96 (105)
T ss_dssp CCSSCSSSCCCCBC
T ss_pred CCCCCcCCCCCccC
Confidence 46788888887754
No 29
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=24.33 E-value=30 Score=27.39 Aligned_cols=35 Identities=17% Similarity=0.553 Sum_probs=21.2
Q ss_pred CCcccccCCCCCCCCceeeeecccCCCCCcccccccccccccCc
Q 046549 15 PESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRGG 58 (250)
Q Consensus 15 pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~GG 58 (250)
|+.+...|..|... | +...-||-|+.|.+.+=..=
T Consensus 15 Pd~~~~~C~~C~~~---F------s~~~RkHHCR~CG~ifC~~C 49 (120)
T 1y02_A 15 PTGLEPSCKSCGAH---F------ANTARKQTCLDCKKNFCMTC 49 (120)
T ss_dssp -----CCCTTTCCC---C------SSGGGCEECTTTCCEECGGG
T ss_pred CccccCcccCcCCc---c------ccccccccCCCCCCeeCHHH
Confidence 66677889999875 3 33467899999887665433
No 30
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=23.60 E-value=41 Score=25.24 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=33.3
Q ss_pred CCCCCCCCCcccccCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccCCCcc
Q 046549 8 NPMKPHFPESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRGGALRNIPIGGGT 69 (250)
Q Consensus 8 ~~~kp~~pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~GGtlRnVPVGGG~ 69 (250)
..++...-..-.+.|-.|-... ..-.|+||..|.. .+|+.|+|--..
T Consensus 4 ~G~~Ir~~k~~iLrC~aCf~~t----------~~~~k~FCp~CGn-----~TL~Rvsvsvd~ 50 (79)
T 2con_A 4 GSSGVREARSYILRCHGCFKTT----------SDMNRVFCGHCGN-----KTLKKVSVTIND 50 (79)
T ss_dssp CCCCCCCCCCEEEECSSSCCEE----------SCSSCCSCSSSCC-----SCCEEEECBCCS
T ss_pred CceEeeeeeeeeeEecccceEC----------CCcccccccccCc-----ccceEEEEEECC
Confidence 3445554555678899886542 4578999999964 699999885443
No 31
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.53 E-value=86 Score=21.91 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCCC-ceeeeecccCCCCCccccccccccccc
Q 046549 1 MQDPATFNPMKPHFPESEQLKCPRCESTN-TKFCYYNNYNLSQPRHFCKNCRRYWTR 56 (250)
Q Consensus 1 mq~~~~~~~~kp~~pe~~~~~CPRC~S~~-TKFcYyNNy~~~QPR~fCk~CrRyWT~ 56 (250)
||+..+.+.+...........|++|...- .++....+..--..-+.|..|++-...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~ 63 (90)
T 2dar_A 7 GDQDTLVQRAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAY 63 (90)
T ss_dssp CCCCCSCBCCEEECTTTCCCBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSS
T ss_pred ccccchhhhcccCCCCCCCCCCccCCCEecceEEEECCccccccCCccCCCCCCCCC
Confidence 34555555555544455678899998732 222222222222333677788776653
No 32
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=23.28 E-value=79 Score=23.17 Aligned_cols=43 Identities=28% Similarity=0.685 Sum_probs=27.1
Q ss_pred CCCcccccCCCCCCCCceeeeecccCCCCCcccccccccccccCcccccccC
Q 046549 14 FPESEQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTRGGALRNIPI 65 (250)
Q Consensus 14 ~pe~~~~~CPRC~S~~TKFcYyNNy~~~QPR~fCk~CrRyWT~GGtlRnVPV 65 (250)
.|+.+...|..|.. +| ++..-||-|+.|.+-.=..=.-..+++
T Consensus 15 ~~d~~~~~C~~C~~---~F------~~~~RrhhCr~CG~v~C~~Cs~~~~~l 57 (90)
T 3t7l_A 15 VPDSEAPNCMNCQV---KF------TFTKRRHHCRACGKVFCGVCCNRKCKL 57 (90)
T ss_dssp CCGGGCCBCTTTCC---BC------CSSSCCEECTTTCCEECGGGSCEEEEE
T ss_pred cccccCCcCcCCCC---cc------cchhhCccccCCCCEECCcccCCeeec
Confidence 45556778998876 33 244667888888776655444444444
Done!