Query 046550
Match_columns 115
No_of_seqs 101 out of 123
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 13:14:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046550.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046550hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2615 Permease of the major 99.7 5.2E-18 1.1E-22 144.9 5.7 110 2-111 282-427 (451)
2 PF06681 DUF1182: Protein of u 38.2 11 0.00024 30.6 0.1 38 32-69 87-128 (226)
3 PF05977 MFS_3: Transmembrane 28.2 48 0.001 29.1 2.4 17 82-98 149-165 (524)
4 COG3376 HoxN High-affinity nic 21.5 25 0.00053 30.2 -0.6 39 9-47 204-247 (342)
5 TIGR00788 fbt folate/biopterin 20.7 25 0.00053 29.7 -0.8 22 7-28 280-301 (468)
6 PRK10213 nepI ribonucleoside t 17.4 1.1E+02 0.0023 24.8 2.3 16 82-97 350-365 (394)
7 PF07690 MFS_1: Major Facilita 16.7 1E+02 0.0023 23.0 1.9 19 10-28 27-45 (352)
8 KOG1288 Amino acid transporter 16.6 4.1E+02 0.009 25.8 6.1 25 71-95 119-150 (945)
9 TIGR02718 sider_RhtX_FptX side 14.4 1.5E+02 0.0032 23.5 2.3 17 82-98 350-366 (390)
10 TIGR03839 termin_org_P1 adhesi 13.9 95 0.0021 30.7 1.3 22 7-28 999-1020(1425)
No 1
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.72 E-value=5.2e-18 Score=144.91 Aligned_cols=110 Identities=28% Similarity=0.359 Sum_probs=98.0
Q ss_pred CCCCCC--CCcccccccceeeEeeechhh------------h----HHHHHHHHHH--HHHhhhcchhhHHHHHHHHHHH
Q 046550 2 VSPRKY--GGLSYSTENVGQVLAISSAKL------------K----MLLVLSIPLL--TSYIAMLSGFSRALLINCASVM 61 (115)
Q Consensus 2 vS~r~~--GGL~~sS~dVG~vlaisG~~~------------R----~~~vlsiPlL--~~Ym~~Lsg~~l~~~l~~asil 61 (115)
.+++++ |||+|+|+|+|.+++.+|+.+ | ..+++-++++ .||...+++.+...++|+.+.+
T Consensus 282 ~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l 361 (451)
T KOG2615|consen 282 NTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTL 361 (451)
T ss_pred hhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 456777 999999999999999999998 1 3445445544 6669999999999999999999
Q ss_pred hHhhHHHhhhhhHhhhhhhh----------------hhhhhhcccccceeeeeeccCccccccCCC
Q 046550 62 KNVLSVSIITGLFLLQNRAV----------------SLTKTAGPAVGGAIFSWSQKRQDAGFLPVL 111 (115)
Q Consensus 62 K~~l~~~~~t~~~IL~nnav----------------slfkAigPA~~G~iFSw~qkr~~a~f~pg~ 111 (115)
|++++.+..||.++|||++. +++||+||+.+|++|+|.|++|.+.+.||.
T Consensus 362 ~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~ 427 (451)
T KOG2615|consen 362 KSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGA 427 (451)
T ss_pred HHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHH
Confidence 99999999999999999998 999999999999999999999999998874
No 2
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=38.18 E-value=11 Score=30.64 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=28.7
Q ss_pred HHHHHHH--HHHH--hhhcchhhHHHHHHHHHHHhHhhHHHh
Q 046550 32 LVLSIPL--LTSY--IAMLSGFSRALLINCASVMKNVLSVSI 69 (115)
Q Consensus 32 ~vlsiPl--L~~Y--m~~Lsg~~l~~~l~~asilK~~l~~~~ 69 (115)
-+|++|+ +..| |-..+|.+...-+..++++||..+.+.
T Consensus 87 fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSflk~f~S~t~ 128 (226)
T PF06681_consen 87 FVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFLKNFTSSTT 128 (226)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHHHhHHHHHh
Confidence 3667884 5666 555557667777889999999999877
No 3
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=28.23 E-value=48 Score=29.07 Aligned_cols=17 Identities=29% Similarity=0.862 Sum_probs=15.2
Q ss_pred hhhhhhcccccceeeee
Q 046550 82 SLTKTAGPAVGGAIFSW 98 (115)
Q Consensus 82 slfkAigPA~~G~iFSw 98 (115)
.+.|.+||+.||.++++
T Consensus 149 niar~iGPalgG~Lva~ 165 (524)
T PF05977_consen 149 NIARIIGPALGGILVAF 165 (524)
T ss_pred HHHHhccchHHHHHHHH
Confidence 78999999999998874
No 4
>COG3376 HoxN High-affinity nickel permease [Inorganic ion transport and metabolism]
Probab=21.52 E-value=25 Score=30.19 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=28.1
Q ss_pred CcccccccceeeEeeechhh----hHHHHHHHHHHHHH-hhhcc
Q 046550 9 GLSYSTENVGQVLAISSAKL----KMLLVLSIPLLTSY-IAMLS 47 (115)
Q Consensus 9 GL~~sS~dVG~vlaisG~~~----R~~~vlsiPlL~~Y-m~~Ls 47 (115)
|||||+..-=-+|+++.... -+.+++++|+|.+= |..+.
T Consensus 204 GLGFDTATEiaLL~isa~~a~~gi~~~~il~fPiLFaaGM~L~D 247 (342)
T COG3376 204 GLGFDTATEIALLAISAASAAIGIPIYAILVFPILFAAGMSLLD 247 (342)
T ss_pred ccccchHHHHHHHHHhhHhhhcCCChHHHHHHHHHHHccchhhh
Confidence 78998866555677777555 67788899988665 55543
No 5
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=20.72 E-value=25 Score=29.68 Aligned_cols=22 Identities=9% Similarity=-0.077 Sum_probs=18.5
Q ss_pred CCCcccccccceeeEeeechhh
Q 046550 7 YGGLSYSTENVGQVLAISSAKL 28 (115)
Q Consensus 7 ~GGL~~sS~dVG~vlaisG~~~ 28 (115)
...+++|++++|.++.+.|++.
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~ 301 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGS 301 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHH
Confidence 3579999999999999988654
No 6
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=17.39 E-value=1.1e+02 Score=24.76 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=13.7
Q ss_pred hhhhhhcccccceeee
Q 046550 82 SLTKTAGPAVGGAIFS 97 (115)
Q Consensus 82 slfkAigPA~~G~iFS 97 (115)
++..++||+.+|.++.
T Consensus 350 ~lg~~~G~~l~G~l~~ 365 (394)
T PRK10213 350 QLANTCGAAIGGYALD 365 (394)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6788899999998875
No 7
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=16.72 E-value=1e+02 Score=23.00 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=14.6
Q ss_pred cccccccceeeEeeechhh
Q 046550 10 LSYSTENVGQVLAISSAKL 28 (115)
Q Consensus 10 L~~sS~dVG~vlaisG~~~ 28 (115)
+++|.+++|.+.++..+..
T Consensus 27 ~~~s~~~~~~~~~~~~~~~ 45 (352)
T PF07690_consen 27 LGLSPSQIGLLFSAFFLGS 45 (352)
T ss_dssp STTTSHCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 5688889999888766654
No 8
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=16.62 E-value=4.1e+02 Score=25.79 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=20.2
Q ss_pred hhhHhhhhhhh-------hhhhhhccccccee
Q 046550 71 TGLFLLQNRAV-------SLTKTAGPAVGGAI 95 (115)
Q Consensus 71 t~~~IL~nnav-------slfkAigPA~~G~i 95 (115)
.-|-|-.|-+| .+-|++||=.||.+
T Consensus 119 SicAIsTNGaV~GGGaYymISRsLGpEfGGSI 150 (945)
T KOG1288|consen 119 SICAISTNGAVRGGGAYYMISRSLGPEFGGSI 150 (945)
T ss_pred HHhhhccCCceecCceEEEEEcccCcccCCee
Confidence 34668888888 78899999998865
No 9
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=14.38 E-value=1.5e+02 Score=23.48 Aligned_cols=17 Identities=12% Similarity=0.237 Sum_probs=14.7
Q ss_pred hhhhhhcccccceeeee
Q 046550 82 SLTKTAGPAVGGAIFSW 98 (115)
Q Consensus 82 slfkAigPA~~G~iFSw 98 (115)
++...+||..+|.++.|
T Consensus 350 ~lg~~~g~~~~G~l~~~ 366 (390)
T TIGR02718 350 DLGELIASSIAGYLTDR 366 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999988754
No 10
>TIGR03839 termin_org_P1 adhesin P1. Members of this protein family are the major adhesin of the Mycoplasma terminal organelle. The protein is called adhesin P1, cytadhesin P1, P140, attachment protein, and MgPa, with locus names MG191 in Mycoplasma genitalium and MPN141 in M. pneumoniae. A conserved C-terminal region is shared by additional paralogs in M. pneumoniae and M. gallisepticum, as well as by the member of this family.
Probab=13.89 E-value=95 Score=30.72 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=19.2
Q ss_pred CCCcccccccceeeEeeechhh
Q 046550 7 YGGLSYSTENVGQVLAISSAKL 28 (115)
Q Consensus 7 ~GGL~~sS~dVG~vlaisG~~~ 28 (115)
.-||.|++||||....++|-..
T Consensus 999 t~gl~wt~qdvgnlvv~sgts~ 1020 (1425)
T TIGR03839 999 SSGLNWTPQDVGNLVVSTGTQQ 1020 (1425)
T ss_pred cccccCCccccccEEEecCcee
Confidence 3599999999999999998765
Done!