Query 046550
Match_columns 115
No_of_seqs 101 out of 123
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 23:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046550.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046550hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 14.1 87 0.003 23.2 2.0 19 10-28 56-74 (438)
2 2gfp_A EMRD, multidrug resista 7.4 1.4E+02 0.0049 21.6 1.1 19 10-28 30-48 (375)
3 1kmj_A Selenocysteine lyase; p 6.5 1.7E+02 0.0057 21.4 1.1 16 82-97 223-238 (406)
4 1pw4_A Glycerol-3-phosphate tr 6.4 1.6E+02 0.0055 21.7 0.9 19 10-28 283-301 (451)
5 3o8j_A 2-methylcitrate synthas 6.3 1.1E+02 0.0039 25.2 0.0 28 68-95 14-41 (404)
6 2c0r_A PSAT, phosphoserine ami 5.6 1.7E+02 0.0058 21.4 0.7 16 82-97 194-209 (362)
7 1v7r_A Hypothetical protein PH 5.3 2.5E+02 0.0087 20.5 1.5 13 2-14 132-144 (186)
8 4hr3_A Putative acyl-COA dehyd 5.3 2E+02 0.007 22.2 1.0 17 4-20 78-94 (415)
9 1ns5_A Hypothetical protein YB 5.3 3.5E+02 0.012 19.2 2.2 20 60-79 131-150 (155)
10 1to0_A Hypothetical UPF0247 pr 5.2 3.4E+02 0.012 19.6 2.1 20 60-79 136-155 (167)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=14.09 E-value=87 Score=23.15 Aligned_cols=19 Identities=5% Similarity=0.022 Sum_probs=14.8
Q ss_pred cccccccceeeEeeechhh
Q 046550 10 LSYSTENVGQVLAISSAKL 28 (115)
Q Consensus 10 L~~sS~dVG~vlaisG~~~ 28 (115)
+++|.+++|.+.++..+..
T Consensus 56 ~g~s~~~~g~~~~~~~~~~ 74 (438)
T 3o7q_A 56 FTLTNFQAGLIQSAFYFGY 74 (438)
T ss_dssp SCCCSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 5678889998888776654
No 2
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=7.39 E-value=1.4e+02 Score=21.60 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=14.4
Q ss_pred cccccccceeeEeeechhh
Q 046550 10 LSYSTENVGQVLAISSAKL 28 (115)
Q Consensus 10 L~~sS~dVG~vlaisG~~~ 28 (115)
+++|.+++|.+.++..+..
T Consensus 30 ~g~s~~~~g~~~~~~~~~~ 48 (375)
T 2gfp_A 30 LNVREGAVQSVMGAYLLTY 48 (375)
T ss_dssp SSSTTHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 6778888888887766655
No 3
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=6.45 E-value=1.7e+02 Score=21.44 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=13.2
Q ss_pred hhhhhhcccccceeee
Q 046550 82 SLTKTAGPAVGGAIFS 97 (115)
Q Consensus 82 slfkAigPA~~G~iFS 97 (115)
|+.|.+||.+.|+++.
T Consensus 223 s~~K~~g~~G~G~~~~ 238 (406)
T 1kmj_A 223 SGHKLYGPTGIGILYV 238 (406)
T ss_dssp EGGGTTSCTTCEEEEE
T ss_pred EchhccCCCCcEEEEE
Confidence 7999999998777664
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=6.36 E-value=1.6e+02 Score=21.69 Aligned_cols=19 Identities=0% Similarity=-0.090 Sum_probs=14.1
Q ss_pred cccccccceeeEeeechhh
Q 046550 10 LSYSTENVGQVLAISSAKL 28 (115)
Q Consensus 10 L~~sS~dVG~vlaisG~~~ 28 (115)
++++.++.|.++++.++..
T Consensus 283 ~g~~~~~~~~~~~~~~~~~ 301 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAG 301 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 5678888888887776654
No 5
>3o8j_A 2-methylcitrate synthase; short chain fatty acids, propionate metabolism, 2-methylcitr cycle, PRPC or 2-MCS, GLTA or CS, 2-methy synthase; 2.41A {Salmonella enterica}
Probab=6.30 E-value=1.1e+02 Score=25.18 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=0.5
Q ss_pred HhhhhhHhhhhhhhhhhhhhccccccee
Q 046550 68 SIITGLFLLQNRAVSLTKTAGPAVGGAI 95 (115)
Q Consensus 68 ~~~t~~~IL~nnavslfkAigPA~~G~i 95 (115)
...|.++|||||-+.+=+-..|-..|..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~Gl~gv~ 41 (404)
T 3o8j_A 14 SHMTDTTILQNNTHVIKPKKSVALSGVP 41 (404)
T ss_dssp ---------------------------C
T ss_pred hhccCcchhhcCcccCCCCCCCCCCCce
Confidence 3467899999999944333556555554
No 6
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=5.60 E-value=1.7e+02 Score=21.39 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.0
Q ss_pred hhhhhhcccccceeee
Q 046550 82 SLTKTAGPAVGGAIFS 97 (115)
Q Consensus 82 slfkAigPA~~G~iFS 97 (115)
|+-|..||.+.|+++.
T Consensus 194 s~~K~~g~~G~G~l~~ 209 (362)
T 2c0r_A 194 GAQKNLGPSGVTVVIV 209 (362)
T ss_dssp ETTTTTCCSSCEEEEE
T ss_pred eccccccCcCcEEEEE
Confidence 7899999988677654
No 7
>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken structural genomics/prote initiative, RSGI, hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii} SCOP: c.51.4.1 PDB: 2dvn_A* 2dvo_A* 2dvp_A 2ehk_A 2zti_A 2e5x_A*
Probab=5.34 E-value=2.5e+02 Score=20.54 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=11.1
Q ss_pred CCCCCCCCccccc
Q 046550 2 VSPRKYGGLSYST 14 (115)
Q Consensus 2 vS~r~~GGL~~sS 14 (115)
..||-.+||||++
T Consensus 132 ~~prG~~GFGyDP 144 (186)
T 1v7r_A 132 NEKRGTHGFGYDP 144 (186)
T ss_dssp SSCCCSSSCTTGG
T ss_pred ccccCCCCCCCCc
Confidence 4688899999987
No 8
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=5.31 E-value=2e+02 Score=22.21 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=12.8
Q ss_pred CCCCCCcccccccceee
Q 046550 4 PRKYGGLSYSTENVGQV 20 (115)
Q Consensus 4 ~r~~GGL~~sS~dVG~v 20 (115)
|++|||.+++..+...+
T Consensus 78 P~~~GG~g~~~~~~~~v 94 (415)
T 4hr3_A 78 PDPELGGGLSNSEYAPL 94 (415)
T ss_dssp CCTTTSCCCCHHHHHHH
T ss_pred CHHHCCCCCCHHHHHHH
Confidence 78999999887665444
No 9
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=5.27 E-value=3.5e+02 Score=19.21 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=16.3
Q ss_pred HHhHhhHHHhhhhhHhhhhh
Q 046550 60 VMKNVLSVSIITGLFLLQNR 79 (115)
Q Consensus 60 ilK~~l~~~~~t~~~IL~nn 79 (115)
++|.++..+++.+..|+.|.
T Consensus 131 l~RliL~EQiYRA~~Il~g~ 150 (155)
T 1ns5_A 131 LVRVLVAESLYRAWSITTNH 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCcC
Confidence 55677889999999998874
No 10
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=5.22 E-value=3.4e+02 Score=19.58 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.3
Q ss_pred HHhHhhHHHhhhhhHhhhhh
Q 046550 60 VMKNVLSVSIITGLFLLQNR 79 (115)
Q Consensus 60 ilK~~l~~~~~t~~~IL~nn 79 (115)
++|.++..+++.+..|+.|.
T Consensus 136 L~RliL~EQiYRA~tIl~g~ 155 (167)
T 1to0_A 136 LMRLILVEQIYRAFRINRGE 155 (167)
T ss_dssp HHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 56777889999999998774
Done!