Query 046550
Match_columns 115
No_of_seqs 101 out of 123
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 23:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046550.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046550hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r2ja2 e.6.1.1 (A:3-212) Prot 11.9 12 0.00085 25.2 -1.5 19 3-21 41-59 (210)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 8.9 29 0.0021 23.7 -0.3 19 10-28 54-72 (447)
3 d2eifa2 b.40.4.5 (A:74-132) C- 8.1 64 0.0047 18.6 1.1 11 16-26 4-14 (59)
4 d1iz6a2 b.40.4.5 (A:71-137) C- 7.9 60 0.0044 19.2 0.9 12 16-27 4-15 (67)
5 d1bkba2 b.40.4.5 (A:75-139) C- 7.9 61 0.0044 19.1 0.9 11 16-26 5-15 (65)
6 d1jqoa_ c.1.12.3 (A:) Phosphoe 7.3 28 0.002 29.6 -1.2 13 93-105 742-754 (936)
7 d1to0a_ c.116.1.3 (A:) Hypothe 7.2 1.1E+02 0.0083 19.4 2.2 20 60-79 136-155 (157)
8 d1pv7a_ f.38.1.2 (A:) Lactose 7.0 22 0.0016 23.4 -1.7 19 10-28 38-56 (417)
9 d1ns5a_ c.116.1.3 (A:) Hypothe 6.8 1.2E+02 0.0089 19.2 2.2 20 60-79 131-150 (153)
10 d1o6da_ c.116.1.3 (A:) Hypothe 6.2 1.2E+02 0.0091 19.1 2.0 20 60-79 128-147 (147)
No 1
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]}
Probab=11.94 E-value=12 Score=25.19 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=14.2
Q ss_pred CCCCCCCcccccccceeeE
Q 046550 3 SPRKYGGLSYSTENVGQVL 21 (115)
Q Consensus 3 S~r~~GGL~~sS~dVG~vl 21 (115)
=|+.|||.+++..+...++
T Consensus 41 iP~e~GG~g~~~~~~~~v~ 59 (210)
T d1r2ja2 41 VAAEHGGLGLGSRENGEFT 59 (210)
T ss_dssp SCGGGTCCCCCHHHHHHHH
T ss_pred CChhHccccccHHHHhhhh
Confidence 3789999999887755443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.94 E-value=29 Score=23.66 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.6
Q ss_pred cccccccceeeEeeechhh
Q 046550 10 LSYSTENVGQVLAISSAKL 28 (115)
Q Consensus 10 L~~sS~dVG~vlaisG~~~ 28 (115)
+++|.+|+|.+.++..+..
T Consensus 54 ~g~s~~~~g~~~s~~~~~~ 72 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAY 72 (447)
T ss_dssp STTCSSCHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHH
Confidence 5789999999988877655
No 3
>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.09 E-value=64 Score=18.62 Aligned_cols=11 Identities=55% Similarity=0.619 Sum_probs=8.6
Q ss_pred cceeeEeeech
Q 046550 16 NVGQVLAISSA 26 (115)
Q Consensus 16 dVG~vlaisG~ 26 (115)
..|||+++.|=
T Consensus 4 k~aQVlsi~G~ 14 (59)
T d2eifa2 4 RKGQVLAIMGD 14 (59)
T ss_dssp EEEEEEEEETT
T ss_pred ceeEEEEEcCC
Confidence 46889998884
No 4
>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=7.95 E-value=60 Score=19.21 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=9.0
Q ss_pred cceeeEeeechh
Q 046550 16 NVGQVLAISSAK 27 (115)
Q Consensus 16 dVG~vlaisG~~ 27 (115)
..|||+|+.|=.
T Consensus 4 k~aQVlsi~Gd~ 15 (67)
T d1iz6a2 4 KTAQVIAITPDT 15 (67)
T ss_dssp EEEEEEEECSSE
T ss_pred ceeEEEEEcCCe
Confidence 468999988743
No 5
>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=7.93 E-value=61 Score=19.09 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=8.7
Q ss_pred cceeeEeeech
Q 046550 16 NVGQVLAISSA 26 (115)
Q Consensus 16 dVG~vlaisG~ 26 (115)
..|||+|+.|=
T Consensus 5 ~~aQVlsi~Gd 15 (65)
T d1bkba2 5 FTAQILSVSGD 15 (65)
T ss_dssp EEEEEEEECSS
T ss_pred cceeEEEEcCC
Confidence 47899998884
No 6
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]}
Probab=7.33 E-value=28 Score=29.61 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=10.1
Q ss_pred ceeeeeeccCccc
Q 046550 93 GAIFSWSQKRQDA 105 (115)
Q Consensus 93 G~iFSw~qkr~~a 105 (115)
=++|||.|.|++.
T Consensus 742 PWVfsWtQ~R~~l 754 (936)
T d1jqoa_ 742 PWIFSWTQTRFHL 754 (936)
T ss_dssp HHHHHHHHTTCCH
T ss_pred chHHHHHHhhccc
Confidence 4789999988763
No 7
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=7.24 E-value=1.1e+02 Score=19.42 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.1
Q ss_pred HHhHhhHHHhhhhhHhhhhh
Q 046550 60 VMKNVLSVSIITGLFLLQNR 79 (115)
Q Consensus 60 ilK~~l~~~~~t~~~IL~nn 79 (115)
+.|.++..+++.+.+|+.|.
T Consensus 136 l~r~~l~EQiYRa~tI~~~~ 155 (157)
T d1to0a_ 136 LMRLILVEQIYRAFRINRGE 155 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 45667789999999999874
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.03 E-value=22 Score=23.37 Aligned_cols=19 Identities=21% Similarity=0.107 Sum_probs=14.5
Q ss_pred cccccccceeeEeeechhh
Q 046550 10 LSYSTENVGQVLAISSAKL 28 (115)
Q Consensus 10 L~~sS~dVG~vlaisG~~~ 28 (115)
+++|..|+|.+.++..+..
T Consensus 38 ~g~s~~~~g~i~s~~~l~~ 56 (417)
T d1pv7a_ 38 NHISKSDTGIIFAAISLFS 56 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 4678889999888766654
No 9
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=6.77 E-value=1.2e+02 Score=19.19 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=15.9
Q ss_pred HHhHhhHHHhhhhhHhhhhh
Q 046550 60 VMKNVLSVSIITGLFLLQNR 79 (115)
Q Consensus 60 ilK~~l~~~~~t~~~IL~nn 79 (115)
+.|.++..+++.+..|+.|.
T Consensus 131 lar~~l~EQlYRa~~I~~~~ 150 (153)
T d1ns5a_ 131 LVRVLVAESLYRAWSITTNH 150 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 44667789999999999874
No 10
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=6.21 E-value=1.2e+02 Score=19.14 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=15.5
Q ss_pred HHhHhhHHHhhhhhHhhhhh
Q 046550 60 VMKNVLSVSIITGLFLLQNR 79 (115)
Q Consensus 60 ilK~~l~~~~~t~~~IL~nn 79 (115)
+.|.++..+++.+..|+.|.
T Consensus 128 l~rv~l~EQlYRa~~I~~ge 147 (147)
T d1o6da_ 128 MTVLIVLEQIFRAFKIIHGE 147 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 45666789999999998773
Done!