BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046552
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
pdb|2EIX|B Chain B, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
Length = 243
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 93/137 (67%), Gaps = 12/137 (8%)
Query: 55 ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEG 114
++GLPIGQH+S + D G+E+ +PYTP + D + GYF+L+IK+Y +G+MS ++ L G
Sbjct: 39 VVGLPIGQHMSVKATVD-GKEIYRPYTPVSSDDEKGYFDLIIKVYEKGQMSQYIDHLNPG 97
Query: 115 DYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKT 174
D+L ++GP KG+F Y+P V+ G + G TGI PM QVARAI++NP +KT
Sbjct: 98 DFLQVRGP-----------KGQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKEKT 146
Query: 175 NVYLIYANVTFYDILLK 191
+ LI+ANV DILL+
Sbjct: 147 IINLIFANVNEDDILLR 163
>pdb|1UMK|A Chain A, The Structure Of Human Erythrocyte Nadh-Cytochrome B5
Reductase
Length = 275
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 27/159 (16%)
Query: 53 KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMY-----PQ----GR 103
+ ILGLP+GQHI R D G V++PYTP + D D G+ +LVIK+Y P+ G+
Sbjct: 42 QHILGLPVGQHIYLSARID-GNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGK 100
Query: 104 MSHHVHELQEGDYLPLKGPDPSRRFDSLLL---KGRFKYQPGQ--------VEAFGTLTG 152
MS ++ +Q GD + +GP LL+ KG+F +P + V++ G + G
Sbjct: 101 MSQYLESMQIGDTIEFRGPS------GLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAG 154
Query: 153 DTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191
TGI PM QV RAI+++P+D T +L++AN T DILL+
Sbjct: 155 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLR 193
>pdb|1NDH|A Chain A, Crystal Structure Of Nadh-Cytochrome B5 Reductase From Pig
Liver At 2.4 Angstroms Resolution
Length = 272
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 27/159 (16%)
Query: 53 KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMY-----PQ----GR 103
+ ILGLP+GQHI R D G VI+PYTP + D D G+ +LVIK+Y P+ G+
Sbjct: 39 EHILGLPVGQHIYLSARID-GNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGK 97
Query: 104 MSHHVHELQEGDYLPLKGPDPSRRFDSLLL---KGRFKYQPGQ--------VEAFGTLTG 152
MS ++ ++ GD + +GP+ LL+ KG+F +P + V++ G + G
Sbjct: 98 MSQYLESMKIGDTIEFRGPN------GLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAG 151
Query: 153 DTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191
TGI PM QV RAI+++P+D T +L++AN T DILL+
Sbjct: 152 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLR 190
>pdb|1IB0|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad And Nad
pdb|1I7P|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad
Length = 274
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 27/159 (16%)
Query: 53 KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMY-----PQ----GR 103
+ ILGLPIGQHI R D G VI+PYTP + D D G+ +LV+K+Y P+ G+
Sbjct: 41 QHILGLPIGQHIYLSTRID-GNLVIRPYTPVSSDDDKGFVDLVVKVYFKETHPKFPAGGK 99
Query: 104 MSHHVHELQEGDYLPLKGPDPSRRFDSLLL---KGRFKYQPGQ--------VEAFGTLTG 152
MS ++ + GD + +GP+ LL+ KG+F + + V++ G + G
Sbjct: 100 MSQYLENMNIGDTIEFRGPN------GLLVYQGKGKFAIRADKKSNPVVRTVKSVGMIAG 153
Query: 153 DTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191
TGI PM QV RA+L++PND T YL++AN + DILL+
Sbjct: 154 GTGITPMLQVIRAVLKDPNDHTVCYLLFANQSEKDILLR 192
>pdb|1QX4|A Chain A, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
pdb|1QX4|B Chain B, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
Length = 274
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 92/159 (57%), Gaps = 27/159 (16%)
Query: 53 KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMY-----PQ----GR 103
+ ILGLPIGQHI R D G VI+PYTP + D D G+ +LV+K+Y P+ G+
Sbjct: 41 QHILGLPIGQHIYLSTRID-GNLVIRPYTPVSSDDDKGFVDLVVKVYFKETHPKFPAGGK 99
Query: 104 MSHHVHELQEGDYLPLKGPDPSRRFDSLLL---KGRFKYQPGQ--------VEAFGTLTG 152
M ++ + GD + +GP+ LL+ KG+F + + V++ G + G
Sbjct: 100 MPQYLENMNIGDTIEFRGPN------GLLVYQGKGKFAIRADKKSNPVVRTVKSVGMIAG 153
Query: 153 DTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191
TGI PM QV RA+L++PND T YL++AN + DILL+
Sbjct: 154 GTGITPMLQVIRAVLKDPNDHTVCYLLFANQSEKDILLR 192
>pdb|1CNF|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
pdb|2CND|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
Length = 270
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 85/150 (56%), Gaps = 16/150 (10%)
Query: 54 RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMY-----PQ----GRM 104
++LGLPIG+HI + G+ ++ YTP ++ +IG+F+L++K+Y P+ G M
Sbjct: 39 QVLGLPIGKHIFVCATIE-GKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLM 97
Query: 105 SHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEA--FGTLTGDTGIAPMFQV 162
+ ++ L G Y+ +KGP + +G F Q A + G +GI PM+Q+
Sbjct: 98 TQYLDSLPVGSYIDVKGPLGHVEYTG---RGSFVINGKQRNARRLAMICGGSGITPMYQI 154
Query: 163 ARAIL-ENPNDKTNVYLIYANVTFYDILLK 191
+A+L + P D T ++L+YAN T DILL+
Sbjct: 155 IQAVLRDQPEDHTEMHLVYANRTEDDILLR 184
>pdb|1CNE|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
Length = 270
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 85/150 (56%), Gaps = 16/150 (10%)
Query: 54 RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMY-----PQ----GRM 104
++LGLPIG+HI + G+ ++ YTP ++ +IG+F+L++K+Y P+ G M
Sbjct: 39 QVLGLPIGKHIFVCATIE-GKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLM 97
Query: 105 SHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEA--FGTLTGDTGIAPMFQV 162
+ ++ L G Y+ +KGP + +G F Q A + G +GI PM+Q+
Sbjct: 98 TQYLDSLPVGSYIDVKGPLGHVEYTG---RGSFVINGKQRNARRLAMICGGSGITPMYQI 154
Query: 163 ARAIL-ENPNDKTNVYLIYANVTFYDILLK 191
+A+L + P D T ++L+YAN T DILL+
Sbjct: 155 IQAVLRDQPEDHTEMHLVYANRTEDDILLR 184
>pdb|1TVC|A Chain A, Fad And Nadh Binding Domain Of Methane Monooxygenase
Reductase From Methylococcus Capsulatus (Bath)
Length = 250
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 15/109 (13%)
Query: 73 GEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHV-HELQEGDYLPLKGPDPSRRFDSL 131
G +V + Y+PA L + G E +I++ P+GR S ++ ++ + G L +KGP
Sbjct: 56 GTDVSRSYSPANLPNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGP--------- 106
Query: 132 LLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILE--NPNDKTNVYL 178
G F + + + G TG+AP+ + R + E PN+ T +Y
Sbjct: 107 --LGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTAPNE-TRIYF 152
>pdb|2KE9|A Chain A, Nmr Solution Structure Of The Caskin Sh3 Domain
Length = 83
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 80 YTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEG 114
+ P L+ G V++ +P GR H+HE Q G
Sbjct: 31 HDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRG 65
>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp
And 18beta-Glycyrrhetinic Acid
pdb|2VNA|A Chain A, Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1
( Zadh1)
pdb|2W98|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp
And Phenylbutazone
pdb|2W98|B Chain B, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp
And Phenylbutazone
Length = 357
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 43 PEKFNEFKLIKRILGLPIGQHISCRGRDDLGEEVIKPY 80
P+ NE ++ R L L + ++ CR +D G + I P+
Sbjct: 32 PDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPW 69
>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin
Delta-13- Reductase In Complex With Nadp And
15-Keto-Pge2
pdb|2ZB7|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin
Delta-13- Reductase In Complex With Nadph And
Nicotinamide
pdb|2ZB8|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin
Delta-13- Reductase In Complex With Nadp And
Indomethacin
Length = 357
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 43 PEKFNEFKLIKRILGLPIGQHISCRGRDDLGEEVIKPY 80
P+ NE ++ R L L + ++ CR +D G + I P+
Sbjct: 37 PDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPW 74
>pdb|1S1H|C Chain C, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i
Length = 192
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 123 DPSRRFD--SLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQ 161
+ RR + +LL++ RFKY PG + + D G++ + Q
Sbjct: 60 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQ 100
>pdb|3IZB|B Chain B, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|C Chain C, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 240
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 126 RRFD--SLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQ 161
RR + +LL++ RFKY PG + + D G++ + Q
Sbjct: 64 RRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQ 101
>pdb|3JYV|C Chain C, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 188
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 123 DPSRRFD--SLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQ 161
+ RR + +LL++ RFKY PG + + D G++ + Q
Sbjct: 56 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQ 96
>pdb|4FAJ|A Chain A, Structure And Mode Of Peptide Binding Of Pheromone
Receptor Prgz
Length = 564
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 125 SRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILE 168
++ +D LL K +A L D G+ P+FQV A LE
Sbjct: 496 NKNYDELLKDSSSKRWQELKKAEKLLINDMGVVPIFQVGTAKLE 539
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,946,628
Number of Sequences: 62578
Number of extensions: 256155
Number of successful extensions: 584
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 15
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)