Query 046552
Match_columns 191
No_of_seqs 161 out of 1534
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 13:15:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0534 NADH-cytochrome b-5 re 100.0 7.9E-34 1.7E-38 240.0 16.8 144 36-191 41-203 (286)
2 PTZ00319 NADH-cytochrome B5 re 100.0 1.5E-28 3.3E-33 210.3 15.6 148 31-190 18-212 (300)
3 PTZ00274 cytochrome b5 reducta 99.9 5.9E-27 1.3E-31 202.7 16.3 126 55-191 79-211 (325)
4 COG1018 Hmp Flavodoxin reducta 99.9 2.2E-26 4.8E-31 194.1 15.9 136 41-191 16-155 (266)
5 cd00322 FNR_like Ferredoxin re 99.9 1.5E-26 3.3E-31 187.2 13.4 138 39-190 4-142 (223)
6 cd06195 FNR1 Ferredoxin-NADP+ 99.9 1.5E-26 3.2E-31 191.2 12.9 139 39-191 6-147 (241)
7 cd06211 phenol_2-monooxygenase 99.9 3.7E-26 7.9E-31 188.6 13.9 137 38-190 14-154 (238)
8 cd06210 MMO_FAD_NAD_binding Me 99.9 3.3E-26 7.2E-31 188.2 13.4 136 39-190 10-153 (236)
9 cd06215 FNR_iron_sulfur_bindin 99.9 6.5E-26 1.4E-30 185.5 14.2 138 39-190 7-148 (231)
10 cd06190 T4MO_e_transfer_like T 99.9 4.4E-26 9.4E-31 187.0 13.1 137 39-190 5-144 (232)
11 PLN02252 nitrate reductase [NA 99.9 6.9E-26 1.5E-30 216.8 16.3 150 38-191 626-805 (888)
12 cd06212 monooxygenase_like The 99.9 5E-26 1.1E-30 186.8 13.2 136 39-190 9-148 (232)
13 cd06189 flavin_oxioreductase N 99.9 6.9E-26 1.5E-30 185.3 14.0 135 40-191 8-144 (224)
14 PRK10684 HCP oxidoreductase, N 99.9 5.6E-26 1.2E-30 196.6 13.8 139 38-191 17-157 (332)
15 cd06183 cyt_b5_reduct_like Cyt 99.9 6E-26 1.3E-30 185.7 13.2 139 39-190 7-150 (234)
16 cd06191 FNR_iron_sulfur_bindin 99.9 9.5E-26 2.1E-30 185.0 14.3 137 39-190 7-147 (231)
17 cd06216 FNR_iron_sulfur_bindin 99.9 1.1E-25 2.5E-30 186.0 14.8 139 38-190 25-167 (243)
18 cd06209 BenDO_FAD_NAD Benzoate 99.9 6.6E-26 1.4E-30 185.7 13.3 134 39-190 10-147 (228)
19 cd06187 O2ase_reductase_like T 99.9 1.3E-25 2.7E-30 183.0 14.7 137 39-190 5-143 (224)
20 cd06217 FNR_iron_sulfur_bindin 99.9 9.2E-26 2E-30 185.0 13.9 139 39-190 10-152 (235)
21 PRK10926 ferredoxin-NADP reduc 99.9 1.6E-25 3.4E-30 186.7 14.6 138 39-191 13-152 (248)
22 cd06213 oxygenase_e_transfer_s 99.9 1.4E-25 3.1E-30 183.7 13.8 135 39-190 9-145 (227)
23 PRK11872 antC anthranilate dio 99.9 1.1E-25 2.5E-30 195.5 13.9 137 38-191 114-255 (340)
24 cd06188 NADH_quinone_reductase 99.9 6.2E-26 1.4E-30 192.1 11.8 141 37-190 16-196 (283)
25 PRK07609 CDP-6-deoxy-delta-3,4 99.9 1.8E-25 3.9E-30 193.6 14.2 135 39-190 111-249 (339)
26 cd06194 FNR_N-term_Iron_sulfur 99.9 3.3E-25 7.2E-30 180.6 14.6 135 39-190 5-142 (222)
27 cd06184 flavohem_like_fad_nad_ 99.9 4.6E-25 1E-29 182.6 14.5 139 38-190 14-158 (247)
28 cd06196 FNR_like_1 Ferredoxin 99.9 1.8E-25 4E-30 181.7 11.7 134 39-190 9-144 (218)
29 PRK13289 bifunctional nitric o 99.9 3.5E-25 7.6E-30 195.4 14.2 137 40-191 164-307 (399)
30 cd06192 DHOD_e_trans_like FAD/ 99.9 2.8E-25 6E-30 184.0 12.3 134 39-190 5-140 (243)
31 cd06198 FNR_like_3 NAD(P) bind 99.9 3.2E-25 6.9E-30 180.2 11.9 119 56-190 21-140 (216)
32 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 8.5E-25 1.8E-29 190.3 13.9 137 39-190 10-154 (352)
33 PRK08345 cytochrome-c3 hydroge 99.9 7.8E-25 1.7E-29 186.4 13.1 137 38-191 13-155 (289)
34 cd06197 FNR_like_2 FAD/NAD(P) 99.9 8E-25 1.7E-29 179.5 12.7 138 39-190 4-171 (220)
35 cd06214 PA_degradation_oxidore 99.9 1.3E-24 2.7E-29 179.1 13.9 138 39-190 10-153 (241)
36 PRK05713 hypothetical protein; 99.9 8.4E-25 1.8E-29 187.9 13.3 135 40-191 101-238 (312)
37 cd06182 CYPOR_like NADPH cytoc 99.9 1.5E-24 3.2E-29 182.9 14.2 138 39-190 10-165 (267)
38 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.2E-24 2.5E-29 181.2 13.2 136 39-191 5-142 (246)
39 PRK05464 Na(+)-translocating N 99.9 1.7E-24 3.6E-29 192.4 13.6 140 38-190 141-320 (409)
40 COG0543 UbiB 2-polyprenylpheno 99.9 2.6E-24 5.7E-29 180.1 13.1 137 38-190 15-152 (252)
41 cd06221 sulfite_reductase_like 99.9 2.9E-24 6.3E-29 179.5 13.0 135 40-191 6-145 (253)
42 PRK08221 anaerobic sulfite red 99.9 3.4E-24 7.4E-29 180.2 13.1 131 39-190 16-147 (263)
43 PRK08051 fre FMN reductase; Va 99.9 3.6E-24 7.9E-29 176.5 12.9 135 39-190 11-147 (232)
44 TIGR01941 nqrF NADH:ubiquinone 99.9 2.3E-24 4.9E-29 191.4 12.2 138 40-190 139-316 (405)
45 PLN03116 ferredoxin--NADP+ red 99.9 5E-24 1.1E-28 182.9 13.8 136 43-190 42-206 (307)
46 cd06208 CYPOR_like_FNR These f 99.9 8.6E-24 1.9E-28 179.6 13.3 135 45-190 27-185 (286)
47 PRK06222 ferredoxin-NADP(+) re 99.9 8.3E-24 1.8E-28 179.4 11.7 131 39-190 8-141 (281)
48 cd06185 PDR_like Phthalate dio 99.9 2E-23 4.4E-28 168.7 13.5 132 39-190 4-141 (211)
49 cd06219 DHOD_e_trans_like1 FAD 99.9 8.8E-24 1.9E-28 176.0 11.0 131 39-190 7-140 (248)
50 cd06201 SiR_like2 Cytochrome p 99.9 1.8E-23 3.8E-28 178.2 13.1 116 55-190 81-198 (289)
51 TIGR02911 sulfite_red_B sulfit 99.9 1.6E-23 3.4E-28 176.0 12.6 129 41-190 16-145 (261)
52 PRK05802 hypothetical protein; 99.9 1.4E-23 3.1E-28 181.3 11.8 133 40-190 74-215 (320)
53 PTZ00306 NADH-dependent fumara 99.9 3.6E-23 7.8E-28 203.6 16.1 155 34-191 902-1080(1167)
54 cd06200 SiR_like1 Cytochrome p 99.9 3.3E-23 7.1E-28 172.4 12.9 134 39-190 7-154 (245)
55 TIGR03224 benzo_boxA benzoyl-C 99.9 3.6E-23 7.8E-28 184.2 13.0 133 47-190 163-315 (411)
56 PLN03115 ferredoxin--NADP(+) r 99.9 8.4E-23 1.8E-27 179.2 13.6 127 54-191 119-266 (367)
57 PRK00054 dihydroorotate dehydr 99.9 6.4E-23 1.4E-27 170.9 11.8 131 39-190 13-145 (250)
58 cd06186 NOX_Duox_like_FAD_NADP 99.9 8.1E-23 1.8E-27 165.1 10.8 133 44-188 10-153 (210)
59 cd06220 DHOD_e_trans_like2 FAD 99.9 1.5E-22 3.3E-27 166.9 12.2 124 39-191 7-131 (233)
60 cd06193 siderophore_interactin 99.9 1.7E-22 3.8E-27 166.8 11.5 134 39-189 5-161 (235)
61 PLN02292 ferric-chelate reduct 99.9 6.4E-21 1.4E-25 178.4 13.3 134 43-190 336-481 (702)
62 PRK12778 putative bifunctional 99.8 4.9E-21 1.1E-25 181.6 11.5 131 39-190 8-141 (752)
63 PLN02631 ferric-chelate reduct 99.8 1.3E-20 2.9E-25 176.1 12.5 135 42-190 318-462 (699)
64 COG4097 Predicted ferric reduc 99.8 9.4E-21 2E-25 163.6 10.4 122 53-190 238-360 (438)
65 PLN02844 oxidoreductase/ferric 99.8 4.1E-19 8.8E-24 166.8 15.1 134 43-190 323-473 (722)
66 PRK12779 putative bifunctional 99.8 7.3E-19 1.6E-23 170.0 12.9 132 39-190 657-793 (944)
67 PRK12775 putative trifunctiona 99.8 7.1E-19 1.5E-23 171.1 12.4 131 39-190 8-142 (1006)
68 cd06199 SiR Cytochrome p450- l 99.8 6.5E-19 1.4E-23 154.4 6.9 120 55-190 129-259 (360)
69 TIGR01931 cysJ sulfite reducta 99.8 1.1E-18 2.4E-23 161.9 6.8 120 55-190 366-496 (597)
70 cd06207 CyPoR_like NADPH cytoc 99.7 3.7E-18 7.9E-23 150.6 9.4 107 74-191 161-281 (382)
71 cd06206 bifunctional_CYPOR The 99.7 2.1E-18 4.6E-23 152.2 6.8 119 56-190 145-280 (384)
72 PF00970 FAD_binding_6: Oxidor 99.7 9.4E-18 2E-22 120.7 7.5 89 39-139 8-99 (99)
73 KOG0039 Ferric reductase, NADH 99.7 5.7E-17 1.2E-21 151.5 10.2 163 11-188 330-525 (646)
74 cd06203 methionine_synthase_re 99.7 6.4E-17 1.4E-21 143.6 8.6 105 75-190 172-293 (398)
75 PRK10953 cysJ sulfite reductas 99.7 6.6E-17 1.4E-21 150.0 7.6 120 55-191 369-500 (600)
76 cd06204 CYPOR NADPH cytochrome 99.6 4.1E-16 8.9E-21 139.1 8.8 106 74-190 175-315 (416)
77 cd06202 Nitric_oxide_synthase 99.6 5.7E-16 1.2E-20 137.8 9.1 106 75-190 175-300 (406)
78 COG2871 NqrF Na+-transporting 99.6 9.7E-16 2.1E-20 129.0 7.0 124 55-190 161-321 (410)
79 PRK06214 sulfite reductase; Pr 99.6 4.1E-15 8.9E-20 136.1 9.7 103 75-190 314-429 (530)
80 PRK06567 putative bifunctional 99.4 4.1E-12 8.9E-17 122.4 12.8 115 38-170 798-916 (1028)
81 KOG3378 Globins and related he 99.4 1E-12 2.2E-17 110.3 6.2 102 55-168 178-286 (385)
82 COG0369 CysJ Sulfite reductase 99.3 3.2E-12 6.9E-17 118.2 9.1 105 75-191 371-487 (587)
83 KOG1159 NADP-dependent flavopr 99.1 1.4E-10 3.1E-15 103.7 8.5 102 75-190 366-477 (574)
84 KOG1158 NADP/FAD dependent oxi 99.1 4.8E-11 1E-15 110.9 4.2 115 59-188 408-539 (645)
85 PF00175 NAD_binding_1: Oxidor 99.0 1.8E-10 3.9E-15 83.4 3.6 42 149-191 1-42 (109)
86 PF08022 FAD_binding_8: FAD-bi 98.9 2E-10 4.3E-15 84.1 -0.6 82 37-122 7-100 (105)
87 COG2375 ViuB Siderophore-inter 98.7 2.9E-07 6.3E-12 77.5 12.3 135 36-187 23-182 (265)
88 PF08021 FAD_binding_9: Sidero 98.1 2.8E-06 6.1E-11 63.4 4.4 65 58-122 28-113 (117)
89 PF01272 GreA_GreB: Transcript 56.5 32 0.00069 23.1 4.7 56 58-122 6-64 (77)
90 PRK00036 primosomal replicatio 52.1 45 0.00096 24.5 5.1 31 92-122 45-75 (107)
91 PF00667 FAD_binding_1: FAD bi 49.8 21 0.00045 29.0 3.4 25 75-99 177-202 (219)
92 PF08030 NAD_binding_6: Ferric 49.5 25 0.00055 26.2 3.7 18 172-189 33-50 (156)
93 PRK09783 copper/silver efflux 47.9 78 0.0017 28.3 7.1 22 48-69 299-320 (409)
94 PF04954 SIP: Siderophore-inte 47.5 43 0.00093 24.4 4.5 39 145-187 2-40 (119)
95 cd04482 RPA2_OBF_like RPA2_OBF 41.9 42 0.00091 23.5 3.6 32 90-122 28-59 (91)
96 COG0782 Uncharacterized conser 40.3 70 0.0015 24.7 4.9 56 58-122 79-137 (151)
97 TIGR01462 greA transcription e 38.9 51 0.0011 25.3 3.9 59 58-122 81-139 (151)
98 cd05830 Sortase_D_5 Sortase D 37.2 69 0.0015 24.0 4.4 39 84-122 39-77 (137)
99 PRK00226 greA transcription el 36.2 61 0.0013 24.9 4.0 59 58-122 86-144 (157)
100 TIGR00999 8a0102 Membrane Fusi 35.5 2.1E+02 0.0045 23.2 7.4 21 50-70 178-198 (265)
101 PRK01885 greB transcription el 34.6 1.2E+02 0.0026 23.6 5.4 55 58-122 86-143 (157)
102 COG1465 Predicted alternative 33.1 45 0.00098 29.1 3.0 30 90-121 262-291 (376)
103 PRK05753 nucleoside diphosphat 32.3 91 0.002 23.6 4.3 55 59-122 56-113 (137)
104 cd06166 Sortase_D_5 Sortase D 32.3 1E+02 0.0022 22.6 4.6 43 80-122 33-76 (126)
105 PRK02290 3-dehydroquinate synt 29.9 67 0.0015 28.4 3.6 31 90-122 230-260 (344)
106 COG0521 MoaB Molybdopterin bio 28.9 23 0.0005 28.1 0.5 14 145-158 68-81 (169)
107 cd04100 Asp_Lys_Asn_RS_N Asp_L 28.5 61 0.0013 21.9 2.6 33 90-122 27-59 (85)
108 PRK15030 multidrug efflux syst 28.3 2.2E+02 0.0048 25.1 6.7 20 103-122 345-364 (397)
109 PRK11797 D-ribose pyranase; Pr 28.0 65 0.0014 24.6 2.9 51 104-169 11-61 (139)
110 PF13285 DUF4073: Domain of un 27.5 2.4E+02 0.0053 21.9 5.9 40 72-118 114-153 (158)
111 PF06351 Allene_ox_cyc: Allene 25.9 55 0.0012 25.7 2.1 48 92-156 61-112 (176)
112 PLN02343 allene oxide cyclase 25.8 1.3E+02 0.0028 24.7 4.3 48 92-156 112-163 (229)
113 PRK05892 nucleoside diphosphat 25.3 1.5E+02 0.0033 23.0 4.6 60 58-122 83-143 (158)
114 PF14283 DUF4366: Domain of un 25.0 82 0.0018 26.0 3.1 15 21-35 170-184 (218)
115 cd05829 Sortase_E Sortase E (S 24.6 1.8E+02 0.004 21.9 4.9 45 78-122 38-84 (144)
116 COG2130 Putative NADP-dependen 24.3 1.3E+02 0.0027 26.6 4.2 81 52-154 85-185 (340)
117 PF02359 CDC48_N: Cell divisio 24.2 2.3E+02 0.0049 19.3 4.9 57 55-121 27-83 (87)
118 TIGR02227 sigpep_I_bact signal 23.6 3.4E+02 0.0074 20.7 8.9 10 112-121 77-86 (163)
119 TIGR01076 sortase_fam LPXTG-si 23.0 1.9E+02 0.004 21.5 4.6 36 87-122 39-75 (136)
120 PRK09578 periplasmic multidrug 22.8 3.1E+02 0.0067 24.0 6.6 21 50-70 278-298 (385)
121 PF01564 Spermine_synth: Sperm 22.6 1.7E+02 0.0036 24.3 4.6 23 143-170 76-98 (246)
122 PF13567 DUF4131: Domain of un 22.1 3.1E+02 0.0068 19.8 7.7 13 110-122 128-140 (176)
123 PF12273 RCR: Chitin synthesis 21.7 43 0.00092 24.9 0.8 11 40-50 30-40 (130)
124 PF01959 DHQS: 3-dehydroquinat 21.4 90 0.002 27.7 2.9 31 90-122 240-270 (354)
125 PF11297 DUF3098: Protein of u 21.4 1.9E+02 0.0041 19.5 3.8 38 14-51 9-46 (69)
126 PHA02099 hypothetical protein 21.3 1.2E+02 0.0026 20.6 2.8 51 91-155 2-54 (84)
127 PRK09859 multidrug efflux syst 21.3 3.5E+02 0.0076 23.7 6.6 19 51-69 276-294 (385)
128 PRK11556 multidrug efflux syst 21.1 2.9E+02 0.0063 24.7 6.1 21 102-122 359-379 (415)
129 TIGR01955 RfaH transcriptional 21.0 1.7E+02 0.0036 22.1 4.1 17 109-125 107-124 (159)
130 PF14250 AbrB-like: AbrB-like 20.5 1.5E+02 0.0033 20.1 3.2 32 91-122 28-64 (71)
131 TIGR01461 greB transcription e 20.4 2.4E+02 0.0053 21.7 4.9 55 58-122 84-141 (156)
132 cd00004 Sortase Sortases are c 20.4 2.7E+02 0.0059 20.1 5.0 39 85-123 38-77 (128)
No 1
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=7.9e-34 Score=240.04 Aligned_cols=144 Identities=49% Similarity=0.925 Sum_probs=135.5
Q ss_pred CCCcCCCCCCeEEEEEeee-------------------ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEE
Q 046552 36 KPKGCLDPEKFNEFKLIKR-------------------ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVI 96 (191)
Q Consensus 36 ~~~~~l~p~~~~~~~l~~~-------------------~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~V 96 (191)
..+...+|+.|.+|++.++ .++++.|||+.+..+ .+|....|||||.|.+.+.|+++|+|
T Consensus 41 ~~~~~~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l~lp~g~hv~~~~~-i~g~~vvRpYTPvs~~~~~g~~~l~V 119 (286)
T KOG0534|consen 41 GKKTLVDPESYYPFRLIDKTELSHDTSLFRFVLPSADHVLGLPIGQHVVLKAP-IGGKLVVRPYTPVSLDDDKGYFDLVV 119 (286)
T ss_pred CcccccCCcceEEEEEEEEEeccCCceeEEEecCCchhccCcccceEEEEEec-CCCcEEEEecCCccCccccceEEEEE
Confidence 4566677888999999766 789999999999999 77899999999999999889999999
Q ss_pred EEeCCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceE
Q 046552 97 KMYPQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNV 176 (191)
Q Consensus 97 k~~~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i 176 (191)
|.|++|.||+||++|++||+|+++|| .|++.++++..++++|||||||||||+|+++++++++.|.+++
T Consensus 120 K~Y~~G~mS~~l~~LkiGd~ve~rGP-----------~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~~~d~tki 188 (286)
T KOG0534|consen 120 KVYPKGKMSQHLDSLKIGDTVEFRGP-----------IGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKI 188 (286)
T ss_pred EeccCCcccHHHhcCCCCCEEEEecC-----------ccceEecCCCcceEEEEecccchhhHHHHHHHHhcCCCCCcEE
Confidence 99999999999999999999999999 9999999988999999999999999999999999999899999
Q ss_pred EEEEeeCCCCceecC
Q 046552 177 YLIYANVTFYDILLK 191 (191)
Q Consensus 177 ~Li~~~r~~~di~~~ 191 (191)
+|+|+|++++|+++|
T Consensus 189 ~lly~N~te~DILlr 203 (286)
T KOG0534|consen 189 SLLYANKTEDDILLR 203 (286)
T ss_pred EEEEecCCccccchH
Confidence 999999999999986
No 2
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.96 E-value=1.5e-28 Score=210.35 Aligned_cols=148 Identities=45% Similarity=0.813 Sum_probs=122.9
Q ss_pred eeeecCCCcCCCCCCeEEEEEeee-------------------ecCCCCCcEEEEEeeCCCCC----eeeeeeecCcCCC
Q 046552 31 FYVTKKPKGCLDPEKFNEFKLIKR-------------------ILGLPIGQHISCRGRDDLGE----EVIKPYTPATLDS 87 (191)
Q Consensus 31 ~~~~~~~~~~l~p~~~~~~~l~~~-------------------~~~~~pGQ~v~l~~~~~~g~----~~~rpyT~~s~~~ 87 (191)
|.-+.+++..|+++.|.++++.++ .+.++||||+.++++. +++ ...|+|||++.|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~~~~pGQfi~l~~~~-~~~~~~~~~~R~YS~~s~~~ 96 (300)
T PTZ00319 18 FMFSRSPPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRLGLPIGQHIVFRCDC-TTPGKPETVQHSYTPISSDD 96 (300)
T ss_pred HHhccCCccccCcCceEEEEEEEEEEcCCCceEEEEECCCCcccCCCccceEEEEEEEe-CCCCccceEEeeeccCCCcc
Confidence 334556667888888888887554 2579999999999873 222 5789999999998
Q ss_pred CCCEEEEEEEEe---------CCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCC---------------C
Q 046552 88 DIGYFELVIKMY---------PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPG---------------Q 143 (191)
Q Consensus 88 ~~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~---------------~ 143 (191)
+++.++|+||.+ ++|.+|+||+++++||+|.++|| +|.|.+..+ .
T Consensus 97 ~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP-----------~G~f~~~~~~~~~~~~~~~~~~~~~ 165 (300)
T PTZ00319 97 EKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGP-----------VGKFEYLGNGTYTVHKGKGGLKTMH 165 (300)
T ss_pred cCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEcc-----------ceeeEecCCcceeeccccccccccc
Confidence 889999999998 67999999999999999999999 887765431 2
Q ss_pred CceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 144 VEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 144 ~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
.++++|||||||||||++|+++++++..+.++++|+|++|+.+|+++
T Consensus 166 ~~~illIAgGtGIaP~~sml~~l~~~~~~~~~i~liyg~r~~~dl~~ 212 (300)
T PTZ00319 166 VDAFAMIAGGTGITPMLQIIHAIKKNKEDRTKVFLVYANQTEDDILL 212 (300)
T ss_pred cceEEEEecCcccCHHHHHHHHHHhCCCCCceEEEEEecCCHHHhhH
Confidence 35899999999999999999999877545578999999999999876
No 3
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.95 E-value=5.9e-27 Score=202.70 Aligned_cols=126 Identities=28% Similarity=0.498 Sum_probs=109.0
Q ss_pred ecCCCCCcEEEEEeeCC--CCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEEEeCCCCCccccccc
Q 046552 55 ILGLPIGQHISCRGRDD--LGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLL 132 (191)
Q Consensus 55 ~~~~~pGQ~v~l~~~~~--~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~ 132 (191)
.+.++||||+.+..+.. .+....|+|||+|.|.+.+.++|+||++++|.+|.||+++++||+|.++||
T Consensus 79 ~~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G~~S~~L~~lk~Gd~v~v~GP---------- 148 (325)
T PTZ00274 79 EFNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDGLMTNHLFGMHVGDKLLFRSV---------- 148 (325)
T ss_pred ccCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCCcccHHHhcCCCCCEEEEeCC----------
Confidence 47899999999876521 234678999999999877899999999999999999999999999999999
Q ss_pred cccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCC-----CCCceEEEEEeeCCCCceecC
Q 046552 133 LKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENP-----NDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 133 ~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~-----~~~~~i~Li~~~r~~~di~~~ 191 (191)
.|.+.++++..++++|||||||||||++|++++++++ .+.++++|+|++|+.+|++++
T Consensus 149 -~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~di~~~ 211 (325)
T PTZ00274 149 -TFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTERHILLK 211 (325)
T ss_pred -eeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHHHhhHH
Confidence 8877666666689999999999999999999998753 234689999999999998763
No 4
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.94 E-value=2.2e-26 Score=194.11 Aligned_cols=136 Identities=24% Similarity=0.352 Sum_probs=118.2
Q ss_pred CCCCCeEEEEEeee---ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCCCCCE
Q 046552 41 LDPEKFNEFKLIKR---ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQEGDY 116 (191)
Q Consensus 41 l~p~~~~~~~l~~~---~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~Gd~ 116 (191)
.+++. ..|++... .+.|+|||||.|.++ .+++...|.||++|.|.+++.+.|.||+.++|.+|+||+ ++++||+
T Consensus 16 ~t~di-~sf~l~~~~g~~~~f~pGQ~i~v~l~-~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G~~S~~Lh~~lk~Gd~ 93 (266)
T COG1018 16 ETDDV-FSFTLEPPDGLRLDFEPGQYITVGLP-NGGEPLLRAYSLSSAPDEDSLYRISVKREDGGGGSNWLHDHLKVGDT 93 (266)
T ss_pred ecCce-EEEEEEcCCCCccccCCCCeEEEEec-CCCceeeEEEEeccCCCCCceEEEEEEEeCCCcccHHHHhcCCCCCE
Confidence 34444 35666433 225999999999999 556689999999999998889999999999999999997 9999999
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
|.+++| .|.|.++.....+++|||||+|||||++|++.+...+. .++.++|++|+.+|+.|+
T Consensus 94 l~v~~P-----------~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~~~~--~~v~l~h~~R~~~~~af~ 155 (266)
T COG1018 94 LEVSAP-----------AGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLDRGP--ADVVLVHAARTPADLAFR 155 (266)
T ss_pred EEEecC-----------CCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHHhCC--CCEEEEEecCChhhcchh
Confidence 999999 99999988665689999999999999999999887663 789999999999998874
No 5
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.94 E-value=1.5e-26 Score=187.23 Aligned_cols=138 Identities=23% Similarity=0.370 Sum_probs=117.0
Q ss_pred cCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEE
Q 046552 39 GCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYL 117 (191)
Q Consensus 39 ~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v 117 (191)
..++++.+ .+++. +..+.++||||+.++++ .++....|+|||++.|.+.+.++|+||..++|.+|+||+++++||++
T Consensus 4 ~~~~~~~~-~~~l~~~~~~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~~s~~l~~~~~G~~v 81 (223)
T cd00322 4 EDVTDDVR-LFRLQLPNGFSFKPGQYVDLHLP-GDGRGLRRAYSIASSPDEEGELELTVKIVPGGPFSAWLHDLKPGDEV 81 (223)
T ss_pred EEecCCeE-EEEEecCCCCCcCCCcEEEEEec-CCCCcceeeeeccCCCCCCCeEEEEEEEeCCCchhhHHhcCCCCCEE
Confidence 34555554 35552 22678999999999998 33567889999999998778999999999999999999999999999
Q ss_pred EEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 118 PLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 118 ~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
.++|| +|++.......++++||||||||||++++++++.++. +..+++|+|++|+.+|+++
T Consensus 82 ~i~gP-----------~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~ 142 (223)
T cd00322 82 EVSGP-----------GGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAADK-PGGEITLLYGARTPADLLF 142 (223)
T ss_pred EEECC-----------CcccccCcccCCcEEEEecCCchhHHHHHHHHHHhhC-CCCcEEEEEecCCHHHhhH
Confidence 99999 9998666566689999999999999999999998764 3568999999999988765
No 6
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.94 E-value=1.5e-26 Score=191.17 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=117.9
Q ss_pred cCCCCCCeEEEEEee-eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEE
Q 046552 39 GCLDPEKFNEFKLIK-RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYL 117 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~-~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v 117 (191)
..++|+.+ .+++.. ..+.++||||+.++++..+++..+|+|||++.+.+ +.++|+||+.++|.+|+||+++++||+|
T Consensus 6 ~~~t~~~~-~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~i~~~i~~~~~G~~s~~l~~l~~Gd~v 83 (241)
T cd06195 6 RDWTDDLF-SFRVTRDIPFRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE-ENLEFYIILVPDGPLTPRLFKLKPGDTI 83 (241)
T ss_pred EEcCCCEE-EEEEcCCCCCccCCCCeEEEeccCCCCCeeeecccccCCCCC-CeEEEEEEEecCCCCchHHhcCCCCCEE
Confidence 35667754 466632 26789999999999984336678899999999876 8999999999999999999999999999
Q ss_pred EEe-CCCCCccccccccccceEeCCC-CCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 118 PLK-GPDPSRRFDSLLLKGRFKYQPG-QVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 118 ~i~-gP~~~~~~~~~~~~G~~~~~~~-~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
.++ || +|+|.+++. ..++++|||||||||||++++++++... ...+++|+|++|+.+|++++
T Consensus 84 ~v~~gP-----------~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~d~~~~ 147 (241)
T cd06195 84 YVGKKP-----------TGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWE-RFDKIVLVHGVRYAEELAYQ 147 (241)
T ss_pred EECcCC-----------CCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhC-CCCcEEEEEccCCHHHhhhH
Confidence 999 99 999887765 4689999999999999999999997543 34689999999999998763
No 7
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.94 E-value=3.7e-26 Score=188.60 Aligned_cols=137 Identities=25% Similarity=0.381 Sum_probs=115.6
Q ss_pred CcCCCCCCeEEEEEe--ee-ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCCC
Q 046552 38 KGCLDPEKFNEFKLI--KR-ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQE 113 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~--~~-~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~ 113 (191)
...++++.+. +++. +. ...++||||+.++++ +....|||||++.+.+.+.++|+||.+++|.+|.+|+ ++++
T Consensus 14 ~~~~t~~~~~-~~l~~~~~~~~~~~pGQ~v~l~~~---~~~~~r~ySi~s~~~~~~~l~l~i~~~~~G~~s~~l~~~l~~ 89 (238)
T cd06211 14 IEDLTPTIKG-VRLKLDEPEEIEFQAGQYVNLQAP---GYEGTRAFSIASSPSDAGEIELHIRLVPGGIATTYVHKQLKE 89 (238)
T ss_pred EEecCCCEEE-EEEEcCCCCcCccCCCCeEEEEcC---CCCCccccccCCCCCCCCEEEEEEEECCCCcchhhHhhcCCC
Confidence 4456777653 5543 22 258999999999987 3345799999999987789999999999999999996 7999
Q ss_pred CCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 114 GDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 114 Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
||+|.|+|| +|++.+.+...++++||||||||||++++++++++++ ...++.|+|++|+.+|+++
T Consensus 90 G~~v~i~gP-----------~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~ 154 (238)
T cd06211 90 GDELEISGP-----------YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLERG-DTRKITLFFGARTRAELYY 154 (238)
T ss_pred CCEEEEECC-----------ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHhcC-CCCcEEEEEecCChhhhcc
Confidence 999999999 9999877665689999999999999999999998765 3468999999999999876
No 8
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.94 E-value=3.3e-26 Score=188.15 Aligned_cols=136 Identities=21% Similarity=0.342 Sum_probs=115.4
Q ss_pred cCCCCCCeEEEEEe--e-----eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccccc-
Q 046552 39 GCLDPEKFNEFKLI--K-----RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHE- 110 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~-----~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~- 110 (191)
..++++.+ .+++. + +.+.++||||+.++++ +....|+|||++.|.+.+.++|+||..++|.+|.+|++
T Consensus 10 ~~~~~~~~-~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~s~~l~~~ 85 (236)
T cd06210 10 DRVSSNVV-RLRLQPDDAEGAGIAAEFVPGQFVEIEIP---GTDTRRSYSLANTPNWDGRLEFLIRLLPGGAFSTYLETR 85 (236)
T ss_pred eecCCceE-EEEEEeCCcccccccCCcCCCCEEEEEcC---CCccceecccCCCCCCCCEEEEEEEEcCCCccchhhhhC
Confidence 45666665 34543 2 2478999999999987 44568999999999877899999999989999999976
Q ss_pred CCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 111 LQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 111 l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+++||+|.|+|| +|+|.+.+...++++||||||||||++++++++++++ ...+++|+|++|+.+|+++
T Consensus 86 ~~~Gd~v~i~gP-----------~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~ 153 (236)
T cd06210 86 AKVGQRLNLRGP-----------LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAEWG-EPQEARLFFGVNTEAELFY 153 (236)
T ss_pred cCCCCEEEEecC-----------cceeeecCCCCccEEEEccCcchhHHHHHHHHHHhcC-CCceEEEEEecCCHHHhhh
Confidence 999999999999 9999887666689999999999999999999988765 3468999999999998765
No 9
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.94 E-value=6.5e-26 Score=185.53 Aligned_cols=138 Identities=25% Similarity=0.364 Sum_probs=116.5
Q ss_pred cCCCCCCeEEEEEeee-e--cCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCCCC
Q 046552 39 GCLDPEKFNEFKLIKR-I--LGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQEG 114 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~~-~--~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~G 114 (191)
..++++.+. +++... . +.++||||+.++++ ..+....|+|||++.|.+.+.++|+||..++|.+|.||+ ++++|
T Consensus 7 ~~~t~~~~~-~~l~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~~~~G 84 (231)
T cd06215 7 IQETPDVKT-FRFAAPDGSLFAYKPGQFLTLELE-IDGETVYRAYTLSSSPSRPDSLSITVKRVPGGLVSNWLHDNLKVG 84 (231)
T ss_pred EEcCCCeEE-EEEECCCCCcCCcCCCCeEEEEEe-cCCCeEEEeeecccCCCCCCcEEEEEEEcCCCcchHHHHhcCCCC
Confidence 356676653 555322 2 78999999999987 346667899999999988788999999999999999996 79999
Q ss_pred CEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 115 DYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 115 d~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|++.++|| +|.|.+.....++++||||||||||+++|++++++.+ ...+++++|++|+.+|+++
T Consensus 85 ~~v~i~gP-----------~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~ 148 (231)
T cd06215 85 DELWASGP-----------AGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLDTR-PDADIVFIHSARSPADIIF 148 (231)
T ss_pred CEEEEEcC-----------cceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-CCCcEEEEEecCChhhhhH
Confidence 99999999 9998876655689999999999999999999998765 3468999999999998765
No 10
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.94 E-value=4.4e-26 Score=187.01 Aligned_cols=137 Identities=27% Similarity=0.387 Sum_probs=115.1
Q ss_pred cCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccccc-CCCCCE
Q 046552 39 GCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHE-LQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~-l~~Gd~ 116 (191)
..++++.+. +++. +..+.++||||+.++++ +....|+|||++.|.+.+.++|+||..++|.+|++|++ +++||+
T Consensus 5 ~~~t~~~~~-~~l~~~~~~~~~pGQ~v~l~~~---~~~~~r~ySi~s~~~~~~~~~~~vk~~~~G~~s~~l~~~~~~g~~ 80 (232)
T cd06190 5 RELTHDVAE-FRFALDGPADFLPGQYALLALP---GVEGARAYSMANLANASGEWEFIIKRKPGGAASNALFDNLEPGDE 80 (232)
T ss_pred EEcCCCEEE-EEEEcCCccccCCCCEEEEECC---CCCcccCccCCcCCCCCCEEEEEEEEcCCCcchHHHhhcCCCCCE
Confidence 456777654 4442 34678999999999987 33367999999998877899999999999999999975 799999
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCC-CCCceEEEEEeeCCCCceec
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENP-NDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~-~~~~~i~Li~~~r~~~di~~ 190 (191)
|.|+|| +|.+...+...++++||||||||||++++++++.+++ +...+++|+|++|+.+|+++
T Consensus 81 v~v~gP-----------~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r~~~~~~~ 144 (232)
T cd06190 81 LELDGP-----------YGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGRTPSDLCA 144 (232)
T ss_pred EEEECC-----------cccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeecCHHHHhh
Confidence 999999 9998876655689999999999999999999998752 23468999999999998876
No 11
>PLN02252 nitrate reductase [NADPH]
Probab=99.94 E-value=6.9e-26 Score=216.76 Aligned_cols=150 Identities=39% Similarity=0.657 Sum_probs=124.4
Q ss_pred CcCCCCCCeEEEEEeee-------------------ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEE
Q 046552 38 KGCLDPEKFNEFKLIKR-------------------ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKM 98 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~~~-------------------~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~ 98 (191)
...|+|..|.+++|.++ .++++|||||.|+++ .+++...|+|||+|.+.+.+.++|+||.
T Consensus 626 ~~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~lgl~pGQhV~l~~~-~~g~~~~R~YSpaS~~~~~g~lel~VK~ 704 (888)
T PLN02252 626 PVALNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVLGLPVGKHVFLCAT-INGKLCMRAYTPTSSDDEVGHFELVIKV 704 (888)
T ss_pred ccccccCceEEEEEEEEEEccCCeEEEEEEECCCcccCCCCCCCEEEEEEe-cCCeEEEeeeEecccCCCCCEEEEEEEE
Confidence 34566666776666544 358899999999987 4577789999999999888999999999
Q ss_pred e---------CCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCC--CCceEEEEecCCCHHHHHHHHHHHH
Q 046552 99 Y---------PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPG--QVEAFGTLTGDTGIAPMFQVARAIL 167 (191)
Q Consensus 99 ~---------~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~--~~~~lvlIagGtGItP~~~il~~l~ 167 (191)
+ ++|.+|++|+++++||+|.|+||.+.+.|.| .|.|.+... ..++++||||||||||++||+++++
T Consensus 705 ~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g---~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll 781 (888)
T PLN02252 705 YFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAG---RGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAIL 781 (888)
T ss_pred EeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecc---cceeeeccccccCceEEEEecceehhHHHHHHHHHH
Confidence 8 5799999999999999999999965555555 555555432 3579999999999999999999999
Q ss_pred hCCCCCceEEEEEeeCCCCceecC
Q 046552 168 ENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 168 ~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
+++.+.++++|+|++|+.+|++|+
T Consensus 782 ~~~~d~t~i~Liyg~Rt~~Dil~~ 805 (888)
T PLN02252 782 RDPEDKTEMSLVYANRTEDDILLR 805 (888)
T ss_pred hccCCCCcEEEEEEECCHHHhhHH
Confidence 876567899999999999999874
No 12
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.94 E-value=5e-26 Score=186.82 Aligned_cols=136 Identities=23% Similarity=0.404 Sum_probs=115.5
Q ss_pred cCCCCCCeEEEEEe--e-eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccccc-CCCC
Q 046552 39 GCLDPEKFNEFKLI--K-RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHE-LQEG 114 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~-~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~-l~~G 114 (191)
..++++.+. +++. + +.+.++||||+.++++ +....|+|||++.|.+.+.++|+||.+++|.+|.+|++ +++|
T Consensus 9 ~~~~~~~~~-~~l~~~~~~~~~~~pGQ~v~l~~~---~~~~~r~ySi~s~~~~~~~l~l~vk~~~~G~~s~~l~~~l~~G 84 (232)
T cd06212 9 EALTHDIRR-LRLRLEEPEPIKFFAGQYVDITVP---GTEETRSFSMANTPADPGRLEFIIKKYPGGLFSSFLDDGLAVG 84 (232)
T ss_pred eecCCCeEE-EEEEcCCCCcCCcCCCCeEEEEcC---CCCcccccccCCCCCCCCEEEEEEEECCCCchhhHHhhcCCCC
Confidence 356666643 4442 2 2578999999999987 33478999999999877899999999999999999975 9999
Q ss_pred CEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 115 DYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 115 d~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|+|.+.|| +|.+.+.....++++||||||||||++++++++++++ ...+++|+|++|+.+|+++
T Consensus 85 ~~v~i~gP-----------~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~ 148 (232)
T cd06212 85 DPVTVTGP-----------YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAASG-SDRPVRFFYGARTARDLFY 148 (232)
T ss_pred CEEEEEcC-----------cccceecCCCCCcEEEEecCcchhHHHHHHHHHHhcC-CCCcEEEEEeccchHHhcc
Confidence 99999999 9999877666689999999999999999999998765 3468999999999998875
No 13
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.94 E-value=6.9e-26 Score=185.25 Aligned_cols=135 Identities=26% Similarity=0.394 Sum_probs=114.8
Q ss_pred CCCCCCeEEEEEee-eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCCCCCEE
Q 046552 40 CLDPEKFNEFKLIK-RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQEGDYL 117 (191)
Q Consensus 40 ~l~p~~~~~~~l~~-~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~Gd~v 117 (191)
.++++.+ .+++.. ..+.++||||+.++++. + ..|||||++.|.+++.++|+||.+++|.+|++|. .+++||+|
T Consensus 8 ~~t~~~~-~l~l~~~~~~~~~pGQ~v~l~~~~--~--~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~~G~~v 82 (224)
T cd06189 8 PLNDDVY-RVRLKPPAPLDFLAGQYLDLLLDD--G--DKRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFEELKENGLV 82 (224)
T ss_pred eCCCceE-EEEEecCCCcccCCCCEEEEEcCC--C--CceeeecccCCCCCCeEEEEEEecCCCccHHHHHHhccCCCEE
Confidence 4566664 455532 26899999999999872 2 3799999999987789999999999999999986 59999999
Q ss_pred EEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 118 PLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 118 ~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
.++|| +|.+...+...++++||||||||||++++++++++++ +..+++|+|++|+.+|++++
T Consensus 83 ~i~gP-----------~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~~ 144 (224)
T cd06189 83 RIEGP-----------LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQG-SKRPIHLYWGARTEEDLYLD 144 (224)
T ss_pred EEecC-----------CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhccCH
Confidence 99999 9999887766789999999999999999999998765 35689999999999998763
No 14
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.94 E-value=5.6e-26 Score=196.59 Aligned_cols=139 Identities=21% Similarity=0.356 Sum_probs=117.6
Q ss_pred CcCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCCCCC
Q 046552 38 KGCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQEGD 115 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~Gd 115 (191)
...++++.+ .+++. ...+.|+||||+.|+++. +....|+||++|.|.+.+.++|+||+.++|.+|+||+ ++++||
T Consensus 17 i~~~t~~v~-~l~l~~~~~~~f~pGQfv~l~~~~--~~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~S~~L~~~l~~Gd 93 (332)
T PRK10684 17 IVQETPDVW-TISLICHDFYPYRAGQYALVSIRN--SAETLRAYTLSSTPGVSEFITLTVRRIDDGVGSQWLTRDVKRGD 93 (332)
T ss_pred EEccCCCeE-EEEEcCCCCCCcCCCCEEEEEecC--CCEeeeeecccCCCCCCCcEEEEEEEcCCCcchhHHHhcCCCCC
Confidence 345667765 45553 346789999999999872 3456799999999987789999999999999999995 899999
Q ss_pred EEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 116 YLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 116 ~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
+|.++|| +|+|.+.....++++||||||||||+++|+++++++. ...+++|+|++|+.+|++|+
T Consensus 94 ~v~v~gP-----------~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~~~-~~~~v~l~y~~r~~~~~~~~ 157 (332)
T PRK10684 94 YLWLSDA-----------MGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLKNR-PQADVQVIFNVRTPQDVIFA 157 (332)
T ss_pred EEEEeCC-----------ccccccCCCCCCcEEEEecCcCcchHHHHHHHHHhcC-CCCCEEEEEeCCChHHhhhH
Confidence 9999999 9999876655679999999999999999999988764 34689999999999998763
No 15
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.94 E-value=6e-26 Score=185.68 Aligned_cols=139 Identities=46% Similarity=0.881 Sum_probs=116.8
Q ss_pred cCCCCCCeEEEEEe--e--eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCC
Q 046552 39 GCLDPEKFNEFKLI--K--RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEG 114 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~--~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~G 114 (191)
..++++.+ .+++. + +.+.++||||+.++++ .++....|+|||++.+.+.+.++|+||.+++|.+|+||+++++|
T Consensus 7 ~~~~~~~~-~~~l~~~~~~~~~~~~pGq~v~l~~~-~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~~s~~l~~~~~G 84 (234)
T cd06183 7 EDISHDTR-IFRFELPSPDQVLGLPVGQHVELKAP-DDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGKMSQYLHSLKPG 84 (234)
T ss_pred EecCCCEE-EEEEECCCCCCcCCCCcccEEEEEec-CCCcccccccccccCCCcCCEEEEEEEECCCCcchhHHhcCCCC
Confidence 35566654 34443 2 2478999999999988 33667789999999988778999999999899999999999999
Q ss_pred CEEEEeCCCCCccccccccccceEeCCCCC-ceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 115 DYLPLKGPDPSRRFDSLLLKGRFKYQPGQV-EAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 115 d~v~i~gP~~~~~~~~~~~~G~~~~~~~~~-~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|+|.++|| +|.+.+.+... ++++||||||||||+++++++++++.++..+++|+|++|+.+++++
T Consensus 85 ~~v~i~gP-----------~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r~~~~~~~ 150 (234)
T cd06183 85 DTVEIRGP-----------FGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANRTEEDILL 150 (234)
T ss_pred CEEEEECC-----------ccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecCCHHHhhh
Confidence 99999999 99988776554 7999999999999999999999876433578999999999988764
No 16
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.94 E-value=9.5e-26 Score=185.05 Aligned_cols=137 Identities=24% Similarity=0.412 Sum_probs=115.5
Q ss_pred cCCCCCCeEEEEEe--ee-ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCCCC
Q 046552 39 GCLDPEKFNEFKLI--KR-ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQEG 114 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~~-~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~G 114 (191)
..++|+.+. +++. +. .+.++||||+.|+++ .++...+|+|||++.+. .+.++|.||..++|.+|.||+ ++++|
T Consensus 7 ~~~t~~~~~-~~l~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~~-~~~l~~~v~~~~~G~~s~~l~~~~~~G 83 (231)
T cd06191 7 RSETPDAVT-IVFAVPGPLQYGFRPGQHVTLKLD-FDGEELRRCYSLCSSPA-PDEISITVKRVPGGRVSNYLREHIQPG 83 (231)
T ss_pred EecCCCcEE-EEEeCCCCCCCCCCCCCeEEEEEe-cCCeEEeeeeeccCCCC-CCeEEEEEEECCCCccchHHHhcCCCC
Confidence 356777753 4443 22 358999999999987 34666789999999887 588999999999999999997 79999
Q ss_pred CEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 115 DYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 115 d~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|++.++|| +|+|.+.+...++++||||||||||++++++++++.. ...++.|+|++|+.+|+++
T Consensus 84 d~v~i~gP-----------~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~~-~~~~v~l~~~~r~~~~~~~ 147 (231)
T cd06191 84 MTVEVMGP-----------QGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQTA-PESDFTLIHSARTPADMIF 147 (231)
T ss_pred CEEEEeCC-----------ccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEecCCHHHHhH
Confidence 99999999 9999887766689999999999999999999998664 3468999999999998765
No 17
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.94 E-value=1.1e-25 Score=186.02 Aligned_cols=139 Identities=22% Similarity=0.326 Sum_probs=116.7
Q ss_pred CcCCCCCCeEEEEEe--eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCC-CCCEEEEEEEEeCCCccccccc-cCCC
Q 046552 38 KGCLDPEKFNEFKLI--KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDS-DIGYFELVIKMYPQGRMSHHVH-ELQE 113 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~--~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~-~~~~l~l~Vk~~~~G~~S~~L~-~l~~ 113 (191)
...++++.+ .+.+. +....++||||+.+.++ .+++...|+|||++.|. +.+.++|+||..++|.+|.||+ ++++
T Consensus 25 i~~~~~~~~-~i~l~~~~~~~~~~pGQ~i~l~~~-~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~~~G~~s~~l~~~~~~ 102 (243)
T cd06216 25 VRPETADMV-TLTLRPNRGWPGHRAGQHVRLGVE-IDGVRHWRSYSLSSSPTQEDGTITLTVKAQPDGLVSNWLVNHLAP 102 (243)
T ss_pred EEEcCCCcE-EEEEecCCCCCCcCCCceEEEEEE-ECCeEEEEEEeccCCCcCCCCeEEEEEEEcCCCcchhHHHhcCCC
Confidence 345666665 35553 23468999999999987 34667789999999987 6689999999999999999997 5999
Q ss_pred CCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 114 GDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 114 Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
||+|.++|| +|.+.++....++++||||||||||++++++++.+++ +..++.|+|++|+.+|+++
T Consensus 103 Gd~v~i~gP-----------~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~-~~~~i~l~~~~r~~~~~~~ 167 (243)
T cd06216 103 GDVVELSQP-----------QGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARG-PTADVVLLYYARTREDVIF 167 (243)
T ss_pred CCEEEEECC-----------ceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEEcCChhhhHH
Confidence 999999999 9998877665689999999999999999999998764 4578999999999988765
No 18
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.94 E-value=6.6e-26 Score=185.66 Aligned_cols=134 Identities=25% Similarity=0.417 Sum_probs=113.9
Q ss_pred cCCCCCCeEEEEEe--e-eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccccc-CCCC
Q 046552 39 GCLDPEKFNEFKLI--K-RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHE-LQEG 114 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~-~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~-l~~G 114 (191)
..++|+.+. +++. + ..+.++||||+.++++ +....|+|||++.|.+ +.++|+||.+++|.+|+||++ +++|
T Consensus 10 ~~~t~~~~~-l~l~~~~~~~~~~~pGQ~v~l~~~---~~~~~r~ysi~s~~~~-~~i~~~i~~~~~G~~s~~l~~~l~~G 84 (228)
T cd06209 10 ERLSDSTIG-LTLELDEAGALAFLPGQYVNLQVP---GTDETRSYSFSSAPGD-PRLEFLIRLLPGGAMSSYLRDRAQPG 84 (228)
T ss_pred EEcCCCeEE-EEEEcCCCCcCccCCCCEEEEEeC---CCCcccccccccCCCC-CeEEEEEEEcCCCcchhhHHhccCCC
Confidence 456777654 4443 2 2578999999999987 4456899999998877 899999999999999999977 9999
Q ss_pred CEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 115 DYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 115 d~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|+|.|+|| +|.+.+.+.. ++++||||||||||+++++++++++. ...+++|+|++|+.+|+++
T Consensus 85 ~~v~v~gP-----------~G~~~~~~~~-~~~vlia~GtGIaP~~~ll~~~~~~~-~~~~v~l~~~~r~~~~~~~ 147 (228)
T cd06209 85 DRLTLTGP-----------LGSFYLREVK-RPLLMLAGGTGLAPFLSMLDVLAEDG-SAHPVHLVYGVTRDADLVE 147 (228)
T ss_pred CEEEEECC-----------cccceecCCC-CeEEEEEcccCHhHHHHHHHHHHhcC-CCCcEEEEEecCCHHHhcc
Confidence 99999999 9998776544 88999999999999999999998765 4568999999999998875
No 19
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.94 E-value=1.3e-25 Score=183.01 Aligned_cols=137 Identities=24% Similarity=0.370 Sum_probs=115.8
Q ss_pred cCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccccc-CCCCCE
Q 046552 39 GCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHE-LQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~-l~~Gd~ 116 (191)
..++++.+. +++. ...+.++||||+.++++. .....|+|||+|.|.+.+.++|+||..++|.+|+||++ +++||+
T Consensus 5 ~~~~~~~~~-~~l~~~~~~~~~pGq~i~l~~~~--~~~~~r~ysi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~l~~G~~ 81 (224)
T cd06187 5 ERLTHDIAV-VRLQLDQPLPFWAGQYVNVTVPG--RPRTWRAYSPANPPNEDGEIEFHVRAVPGGRVSNALHDELKVGDR 81 (224)
T ss_pred eecCCCEEE-EEEEeCCCCCcCCCceEEEEcCC--CCCcceeccccCCCCCCCEEEEEEEeCCCCcchHHHhhcCccCCE
Confidence 456676654 4542 234789999999999873 22367999999998877899999999988999999986 999999
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|.|.|| +|.+...+...++++||||||||||+++|++++.+++ ...++.|+|++|+.+|+++
T Consensus 82 v~i~gP-----------~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~~~-~~~~v~l~~~~~~~~~~~~ 143 (224)
T cd06187 82 VRLSGP-----------YGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALRRG-EPRPVHLFFGARTERDLYD 143 (224)
T ss_pred EEEeCC-----------ccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecCChhhhcC
Confidence 999999 9999887665689999999999999999999998765 4568999999999998875
No 20
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.93 E-value=9.2e-26 Score=185.05 Aligned_cols=139 Identities=26% Similarity=0.374 Sum_probs=117.0
Q ss_pred cCCCCCCeEEEEEee-ee--cCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccccc-CCCC
Q 046552 39 GCLDPEKFNEFKLIK-RI--LGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHE-LQEG 114 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~-~~--~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~-l~~G 114 (191)
..++|+.+ .+++.. .. ..++||||+.++++..++....|||||++.|.+.+.++|+||..++|.+|.+|++ +++|
T Consensus 10 ~~~~~~~~-~~~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~~s~~l~~~l~~G 88 (235)
T cd06217 10 IQETPTVK-TFRLAVPDGVPPPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGEVSPYLHDEVKVG 88 (235)
T ss_pred EecCCCeE-EEEEECCCCCcCCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCcchHHHHhcCCCC
Confidence 35666665 455532 23 7899999999999754566677999999999887899999999999999999974 8999
Q ss_pred CEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 115 DYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 115 d~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|+|.+.|| +|.+.+.+...++++|||||+||||+++++++++.++ ...+++++|++|+.+|+++
T Consensus 89 d~v~i~gP-----------~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~~~-~~~~i~l~~~~r~~~~~~~ 152 (235)
T cd06217 89 DLLEVRGP-----------IGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRDLG-WPVPFRLLYSARTAEDVIF 152 (235)
T ss_pred CEEEEeCC-----------ceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHhcC-CCceEEEEEecCCHHHhhH
Confidence 99999999 9998877655689999999999999999999998765 3578999999999988765
No 21
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.93 E-value=1.6e-25 Score=186.72 Aligned_cols=138 Identities=18% Similarity=0.208 Sum_probs=112.3
Q ss_pred cCCCCCCeEEEEEeeeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEE
Q 046552 39 GCLDPEKFNEFKLIKRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLP 118 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~ 118 (191)
..++++.+ .+++......++||||+.|.++ .++....|+|||+|.|.+ +.++|+||..++|.+|+||+++++||+|.
T Consensus 13 ~~~t~~v~-~l~l~~~~~~~~pGQfv~l~~~-~~g~~~~R~ySias~p~~-~~l~~~ik~~~~G~~S~~L~~l~~Gd~v~ 89 (248)
T PRK10926 13 QNWTDALF-SLTVHAPVDPFTAGQFTKLGLE-IDGERVQRAYSYVNAPDN-PDLEFYLVTVPEGKLSPRLAALKPGDEVQ 89 (248)
T ss_pred EEcCCCeE-EEEEeCCCCCCCCCCEEEEEEe-cCCcEEEeeecccCCCCC-CeEEEEEEEeCCCCcChHHHhCCCCCEEE
Confidence 35666664 4666433347999999999986 446677899999999865 58999999999999999999999999999
Q ss_pred EeCCCCCccccccccc-cceEeCCC-CCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 119 LKGPDPSRRFDSLLLK-GRFKYQPG-QVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 119 i~gP~~~~~~~~~~~~-G~~~~~~~-~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
++|| . |.+.++.. ..++++|||||||||||++|++++.+.. ...+++|+|++|+.+|++|+
T Consensus 90 i~gp-----------~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~-~~~~v~l~~g~r~~~d~~~~ 152 (248)
T PRK10926 90 VVSE-----------AAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLE-RFKNLVLVHAARYAADLSYL 152 (248)
T ss_pred EecC-----------CCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhC-CCCcEEEEEeCCcHHHHHHH
Confidence 9998 6 55555543 3479999999999999999999986543 34689999999999998763
No 22
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.93 E-value=1.4e-25 Score=183.75 Aligned_cols=135 Identities=21% Similarity=0.353 Sum_probs=114.2
Q ss_pred cCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccc-ccCCCCCE
Q 046552 39 GCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHV-HELQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L-~~l~~Gd~ 116 (191)
..++++.+. +++. +..+.++||||+.++++ +....|+|||++.|.+.+.++|+||..++|.+|++| ..+++||+
T Consensus 9 ~~~t~~~~~-~~l~~~~~~~~~pGQ~~~l~~~---~~~~~r~ysi~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~~G~~ 84 (227)
T cd06213 9 ERLTHDIVR-LTVQLDRPIAYKAGQYAELTLP---GLPAARSYSFANAPQGDGQLSFHIRKVPGGAFSGWLFGADRTGER 84 (227)
T ss_pred eecCCCEEE-EEEecCCCCCcCCCCEEEEEeC---CCCcccccccCCCCCCCCEEEEEEEECCCCcchHHHHhcCCCCCE
Confidence 456776654 5553 23578999999999987 233689999999998778999999999999999999 56999999
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|.++|| +|.+.+.+.. ++++||||||||||++++++++++++ ..++++++|++|+.+|+++
T Consensus 85 v~i~gP-----------~G~~~~~~~~-~~~lliagG~GiaP~~~~~~~~~~~~-~~~~i~l~~~~r~~~~~~~ 145 (227)
T cd06213 85 LTVRGP-----------FGDFWLRPGD-APILCIAGGSGLAPILAILEQARAAG-TKRDVTLLFGARTQRDLYA 145 (227)
T ss_pred EEEeCC-----------CcceEeCCCC-CcEEEEecccchhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhcc
Confidence 999999 9999876543 79999999999999999999998765 3578999999999998865
No 23
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.93 E-value=1.1e-25 Score=195.48 Aligned_cols=137 Identities=20% Similarity=0.251 Sum_probs=115.4
Q ss_pred CcCCCCCCeEEEEEe-e---eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCC
Q 046552 38 KGCLDPEKFNEFKLI-K---RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQ 112 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~-~---~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~ 112 (191)
...++++.+. +++. + +.+.|+||||+.++++ +...+|+||+++.|.+.+.++|+||.+++|.+|+||+ +++
T Consensus 114 i~~~s~di~~-l~l~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~L~~~l~ 189 (340)
T PRK11872 114 VELVSETTAI-LHLDASAHGRQLDFLPGQYARLQIP---GTDDWRSYSFANRPNATNQLQFLIRLLPDGVMSNYLRERCQ 189 (340)
T ss_pred EEecCCCeEE-EEEEcCCCCCccCcCCCCEEEEEeC---CCCceeecccCCCCCCCCeEEEEEEECCCCcchhhHhhCCC
Confidence 3455666543 4442 2 4678999999999987 4456899999999987789999999999999999995 699
Q ss_pred CCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 113 EGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 113 ~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
+||+|.|+|| +|+|.+... .++++|||||||||||++|++++++.+ ...+++|+|++|+.+|++++
T Consensus 190 ~G~~v~i~gP-----------~G~f~l~~~-~~~~vliagGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~dl~~~ 255 (340)
T PRK11872 190 VGDEILFEAP-----------LGAFYLREV-ERPLVFVAGGTGLSAFLGMLDELAEQG-CSPPVHLYYGVRHAADLCEL 255 (340)
T ss_pred CCCEEEEEcC-----------cceeEeCCC-CCcEEEEeCCcCccHHHHHHHHHHHcC-CCCcEEEEEecCChHHhccH
Confidence 9999999999 999987654 479999999999999999999998765 34689999999999998763
No 24
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.93 E-value=6.2e-26 Score=192.14 Aligned_cols=141 Identities=18% Similarity=0.278 Sum_probs=114.4
Q ss_pred CCcCCCCCCeEEEEEe--ee-ecCCCCCcEEEEEeeCC----------------------------CCCeeeeeeecCcC
Q 046552 37 PKGCLDPEKFNEFKLI--KR-ILGLPIGQHISCRGRDD----------------------------LGEEVIKPYTPATL 85 (191)
Q Consensus 37 ~~~~l~p~~~~~~~l~--~~-~~~~~pGQ~v~l~~~~~----------------------------~g~~~~rpyT~~s~ 85 (191)
....++++.+. ++|. +. .+.++||||+.++++.. ++....|+|||++.
T Consensus 16 ~~~~~~~d~~~-l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~ 94 (283)
T cd06188 16 SNDNVATFIKE-LVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAYSLANY 94 (283)
T ss_pred Ecccccchhhh-eEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccccCcCCC
Confidence 34556676653 4442 21 36899999999998732 02335699999999
Q ss_pred CCCCCEEEEEEEE---------eCCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCH
Q 046552 86 DSDIGYFELVIKM---------YPQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGI 156 (191)
Q Consensus 86 ~~~~~~l~l~Vk~---------~~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGI 156 (191)
|.+.+.++|+||. .++|.+|+||+++++||+|.|+|| +|.+.... ..++++||||||||
T Consensus 95 p~~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP-----------~G~f~l~~-~~~~~vlIAgGtGI 162 (283)
T cd06188 95 PAEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGP-----------FGEFFIKD-TDREMVFIGGGAGM 162 (283)
T ss_pred CCCCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECc-----------cccccccC-CCCcEEEEEecccH
Confidence 9877899999997 457999999999999999999999 99988764 45799999999999
Q ss_pred HHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 157 APMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 157 tP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|||++|++++++...+..+++|+|++|+.+|+++
T Consensus 163 tP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~~~ 196 (283)
T cd06188 163 APLRSHIFHLLKTLKSKRKISFWYGARSLKELFY 196 (283)
T ss_pred hHHHHHHHHHHhcCCCCceEEEEEecCCHHHhhH
Confidence 9999999998766533468999999999998875
No 25
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.93 E-value=1.8e-25 Score=193.58 Aligned_cols=135 Identities=26% Similarity=0.342 Sum_probs=114.1
Q ss_pred cCCCCCCeEEEEEe--e-eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCCCC
Q 046552 39 GCLDPEKFNEFKLI--K-RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQEG 114 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~-~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~G 114 (191)
..++++.+ .+++. + ..+.|+||||+.++++. + ..|+|||+|.|.+.+.++|+||+.++|.+|+||+ ++++|
T Consensus 111 ~~~~~d~~-~l~l~~~~~~~~~~~pGQfv~l~~~~--~--~~R~ySias~p~~~~~l~~~ik~~~~G~~s~~l~~~l~~G 185 (339)
T PRK07609 111 ERVAGDVM-RLKLRLPATERLQYLAGQYIEFILKD--G--KRRSYSIANAPHSGGPLELHIRHMPGGVFTDHVFGALKER 185 (339)
T ss_pred EcCCCcEE-EEEEEcCCCCCCccCCCCeEEEECCC--C--ceeeeecCCCCCCCCEEEEEEEecCCCccHHHHHHhccCC
Confidence 34556554 34442 2 35789999999999872 2 4799999999987789999999999999999995 79999
Q ss_pred CEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 115 DYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 115 d~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|+|.++|| +|.+.+.+...++++||||||||||+++|++++++.+ ...+++|+|++|+.+|+++
T Consensus 186 ~~v~v~gP-----------~G~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~~~-~~~~i~l~~g~r~~~dl~~ 249 (339)
T PRK07609 186 DILRIEGP-----------LGTFFLREDSDKPIVLLASGTGFAPIKSIVEHLRAKG-IQRPVTLYWGARRPEDLYL 249 (339)
T ss_pred CEEEEEcC-----------ceeEEecCCCCCCEEEEecCcChhHHHHHHHHHHhcC-CCCcEEEEEecCChHHhcc
Confidence 99999999 9999887666689999999999999999999998765 3568999999999999865
No 26
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.93 E-value=3.3e-25 Score=180.65 Aligned_cols=135 Identities=27% Similarity=0.409 Sum_probs=113.8
Q ss_pred cCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccccc-CCCCCE
Q 046552 39 GCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHE-LQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~-l~~Gd~ 116 (191)
..++++.+ .+++. ++.+.++||||+.++++. ...|+|||+|.|.+.+.++|+||..++|.+|.||++ +++||+
T Consensus 5 ~~~~~~~~-~i~l~~~~~~~~~pGQ~v~l~~~~----~~~r~ySi~s~~~~~~~~~~~i~~~~~G~~s~~l~~~~~~G~~ 79 (222)
T cd06194 5 QRLSPDVL-RVRLEPDRPLPYLPGQYVNLRRAG----GLARSYSPTSLPDGDNELEFHIRRKPNGAFSGWLGEEARPGHA 79 (222)
T ss_pred eecCCCEE-EEEEecCCCCCcCCCCEEEEEcCC----CCceeeecCCCCCCCCEEEEEEEeccCCccchHHHhccCCCCE
Confidence 34566664 45553 346789999999999872 246999999999877899999999989999999986 799999
Q ss_pred EEEeCCCCCccccccccccceEeCC-CCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQP-GQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~-~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|.|.|| +|.+...+ ...++++|||||+||||+++++++++..+ ...++.|+|++|+.+|+++
T Consensus 80 v~i~gP-----------~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~ 142 (222)
T cd06194 80 LRLQGP-----------FGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQG-HQGEIRLVHGARDPDDLYL 142 (222)
T ss_pred EEEecC-----------cCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcC-CCccEEEEEecCChhhccC
Confidence 999999 99987764 45579999999999999999999988654 3578999999999998876
No 27
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.93 E-value=4.6e-25 Score=182.65 Aligned_cols=139 Identities=22% Similarity=0.286 Sum_probs=115.5
Q ss_pred CcCCCCCCeEEEEEe--ee-e-cCCCCCcEEEEEeeCCC-CCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccccc-C
Q 046552 38 KGCLDPEKFNEFKLI--KR-I-LGLPIGQHISCRGRDDL-GEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHE-L 111 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~--~~-~-~~~~pGQ~v~l~~~~~~-g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~-l 111 (191)
...++++.+. +++. +. . +.++||||+.+.++... .....|+|||++.|.+ +.++|.||.+++|.+|+||++ +
T Consensus 14 ~~~~s~~~~~-l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~l~~~ik~~~~G~~s~~l~~~~ 91 (247)
T cd06184 14 KVAESEDITS-FYLEPADGGPLPPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG-DYYRISVKREPGGLVSNYLHDNV 91 (247)
T ss_pred EEEcCCCeEE-EEEEeCCCCcCCCCCCCCEEEEEEecCCCCCceeEEeEeccCCCC-CeEEEEEEEcCCCcchHHHHhcC
Confidence 4467777654 5553 21 2 78999999999987332 2467899999999876 489999999999999999986 9
Q ss_pred CCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 112 QEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 112 ~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
++||++.|+|| +|.+.+.+...++++||||||||||+++++++++.+. ...+++|+|++|+.++++|
T Consensus 92 ~~Gd~v~i~gP-----------~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~-~~~~i~l~~~~r~~~~~~~ 158 (247)
T cd06184 92 KVGDVLEVSAP-----------AGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAEG-PGRPVTFIHAARNSAVHAF 158 (247)
T ss_pred CCCCEEEEEcC-----------CCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhcC-CCCcEEEEEEcCchhhHHH
Confidence 99999999999 9998877656689999999999999999999998753 3578999999999998765
No 28
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.93 E-value=1.8e-25 Score=181.73 Aligned_cols=134 Identities=25% Similarity=0.355 Sum_probs=111.7
Q ss_pred cCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCC-CccccccccCCCCCE
Q 046552 39 GCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQ-GRMSHHVHELQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~-G~~S~~L~~l~~Gd~ 116 (191)
..++++.+ .+++. ...+.++||||+.++++..++....|+|||+|.|.+ +.++|+||.+++ |.+|++|+++++||+
T Consensus 9 ~~~~~~~~-~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~l~~~vk~~~~~g~~s~~l~~l~~G~~ 86 (218)
T cd06196 9 EPVTHDVK-RLRFDKPEGYDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED-DVLEFVIKSYPDHDGVTEQLGRLQPGDT 86 (218)
T ss_pred EEcCCCeE-EEEEcCCCcCCCCCCCEEEEEeeCCCCCccccccccccCCCC-CeEEEEEEEcCCCCcHhHHHHhCCCCCE
Confidence 35666664 45553 235789999999999874333457899999999876 899999999876 789999999999999
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+.++|| +|++... ++++||||||||||++++++++++++ ...+++|+|++|+.+|+++
T Consensus 87 v~i~gP-----------~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~~~~ 144 (218)
T cd06196 87 LLIEDP-----------WGAIEYK----GPGVFIAGGAGITPFIAILRDLAAKG-KLEGNTLIFANKTEKDIIL 144 (218)
T ss_pred EEEECC-----------ccceEec----CceEEEecCCCcChHHHHHHHHHhCC-CCceEEEEEecCCHHHHhh
Confidence 999999 9998653 57899999999999999999998754 3568999999999998775
No 29
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.93 E-value=3.5e-25 Score=195.36 Aligned_cols=137 Identities=23% Similarity=0.313 Sum_probs=113.0
Q ss_pred CCCCCCeEEEEEee----eecCCCCCcEEEEEeeCCCCCe--eeeeeecCcCCCCCCEEEEEEEEeCCCcccccccc-CC
Q 046552 40 CLDPEKFNEFKLIK----RILGLPIGQHISCRGRDDLGEE--VIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHE-LQ 112 (191)
Q Consensus 40 ~l~p~~~~~~~l~~----~~~~~~pGQ~v~l~~~~~~g~~--~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~-l~ 112 (191)
.++++.+ .+++.. ..+.++||||+.|+++ .++.. .+|+|||++.|.+ +.++|+||+.++|.+|.||++ ++
T Consensus 164 ~~t~~~~-~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~R~ySias~p~~-~~l~~~Vk~~~~G~~S~~L~~~l~ 240 (399)
T PRK13289 164 PESEVIT-SFYLEPVDGGPVADFKPGQYLGVRLD-PEGEEYQEIRQYSLSDAPNG-KYYRISVKREAGGKVSNYLHDHVN 240 (399)
T ss_pred ECCCCEE-EEEEEcCCCCcCCCCCCCCeEEEEEe-cCCccccceeEEEeeeCCCC-CeEEEEEEECCCCeehHHHhhcCC
Confidence 3455553 344432 2368999999999987 33433 3599999998864 689999999999999999975 99
Q ss_pred CCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 113 EGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 113 ~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
+||+|.++|| +|+|.++....++++||||||||||+++|+++++... ...+++|+|++|+.+|++++
T Consensus 241 ~Gd~v~v~gP-----------~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~-~~~~v~l~~~~r~~~~~~~~ 307 (399)
T PRK13289 241 VGDVLELAAP-----------AGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQQ-PKRPVHFIHAARNGGVHAFR 307 (399)
T ss_pred CCCEEEEEcC-----------ccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhcC-CCCCEEEEEEeCChhhchHH
Confidence 9999999999 9999887666689999999999999999999998654 35789999999999998763
No 30
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.93 E-value=2.8e-25 Score=184.02 Aligned_cols=134 Identities=20% Similarity=0.276 Sum_probs=112.3
Q ss_pred cCCCCCCeEEEEEe--eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCE
Q 046552 39 GCLDPEKFNEFKLI--KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~ 116 (191)
..++++.+. +++. +....++||||+.++++. ++....|||||++.|.+.++++|+||.. |.+|+||+++++||+
T Consensus 5 ~~~t~~~~~-l~l~~~~~~~~~~pGQ~v~l~~~~-~~~~~~rpySi~s~~~~~~~l~l~i~~~--G~~t~~l~~~~~G~~ 80 (243)
T cd06192 5 EQLEPNLVL-LTIKAPLAARLFRPGQFVFLRNFE-SPGLERIPLSLAGVDPEEGTISLLVEIR--GPKTKLIAELKPGEK 80 (243)
T ss_pred EEecCCEEE-EEEEccchhhcCCCCCeEEEecCC-CCCceeeeeEeeecCCCCCEEEEEEEEc--CchHHHHHhCCCCCE
Confidence 456777653 5553 224789999999999873 3456789999999987778999999986 889999999999999
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+.|+|| +|++...+...++++||||||||||++++++++.+++ .+++++|++|+.+|+++
T Consensus 81 l~i~gP-----------~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~~~---~~v~l~~~~r~~~d~~~ 140 (243)
T cd06192 81 LDVMGP-----------LGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAANG---NKVTVLAGAKKAKEEFL 140 (243)
T ss_pred EEEEcc-----------CCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHHCC---CeEEEEEecCcHHHHHH
Confidence 999999 9987665554689999999999999999999998753 58999999999998765
No 31
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.93 E-value=3.2e-25 Score=180.23 Aligned_cols=119 Identities=25% Similarity=0.378 Sum_probs=106.1
Q ss_pred cCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCCCCCEEEEeCCCCCccccccccc
Q 046552 56 LGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQEGDYLPLKGPDPSRRFDSLLLK 134 (191)
Q Consensus 56 ~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~Gd~v~i~gP~~~~~~~~~~~~ 134 (191)
+.++||||+.|+++.. +....|||||++.|.+++.++|+||.. |.+|++|+ ++++||+|.++|| +
T Consensus 21 ~~~~pGQ~v~l~~~~~-~~~~~r~ySi~s~~~~~~~l~l~vk~~--G~~t~~l~~~l~~G~~v~i~gP-----------~ 86 (216)
T cd06198 21 LGHRAGQFAFLRFDAS-GWEEPHPFTISSAPDPDGRLRFTIKAL--GDYTRRLAERLKPGTRVTVEGP-----------Y 86 (216)
T ss_pred CCcCCCCEEEEEeCCC-CCCCCCCcEEecCCCCCCeEEEEEEeC--ChHHHHHHHhCCCCCEEEEECC-----------C
Confidence 7899999999998833 556789999999998878999999987 88999997 9999999999999 9
Q ss_pred cceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 135 GRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 135 G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|.+.+.+. .++++||||||||||++++++++++++ ...+++|+|++|+.+|+++
T Consensus 87 G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~~~-~~~~v~l~~~~r~~~~~~~ 140 (216)
T cd06198 87 GRFTFDDR-RARQIWIAGGIGITPFLALLEALAARG-DARPVTLFYCVRDPEDAVF 140 (216)
T ss_pred CCCccccc-CceEEEEccccCHHHHHHHHHHHHhcC-CCceEEEEEEECCHHHhhh
Confidence 99887655 689999999999999999999998765 3578999999999988765
No 32
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.92 E-value=8.5e-25 Score=190.29 Aligned_cols=137 Identities=22% Similarity=0.414 Sum_probs=114.1
Q ss_pred cCCCCCCeEEEEEe--e---eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCC
Q 046552 39 GCLDPEKFNEFKLI--K---RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQ 112 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~---~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~ 112 (191)
..++++.+ .+++. + ..+.++||||+.|+++ .++....|+||+++.|.+ +.++|+||+.++|.+|.||+ +++
T Consensus 10 ~~~t~~~~-~l~l~~~~~~~~~~~~~pGQ~v~l~~~-~~g~~~~R~ySi~s~p~~-~~l~i~vk~~~~G~~S~~l~~~l~ 86 (352)
T TIGR02160 10 ERLTADAV-AISFEIPDELAEDYRFAPGQHLTLRRE-VDGEELRRSYSICSAPAP-GEIRVAVKKIPGGLFSTWANDEIR 86 (352)
T ss_pred EecCCCeE-EEEEeCCccccccCCCCCCCeEEEEEe-cCCcEeeeeccccCCCCC-CcEEEEEEEeCCCcchHHHHhcCC
Confidence 35666664 45553 2 1368999999999987 446677899999998854 78999999999999999995 899
Q ss_pred CCCEEEEeCCCCCccccccccccceEeCCCC--CceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 113 EGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQ--VEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 113 ~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~--~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+||+|.++|| +|+|.++... .++++||||||||||+++|+++++.++ +..+++|+|++|+.+|++|
T Consensus 87 ~Gd~v~v~gP-----------~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~-~~~~v~l~~~~r~~~d~~~ 154 (352)
T TIGR02160 87 PGDTLEVMAP-----------QGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAE-PRSTFTLVYGNRRTASVMF 154 (352)
T ss_pred CCCEEEEeCC-----------ceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcC-CCceEEEEEEeCCHHHHHH
Confidence 9999999999 9998876542 378999999999999999999988764 3578999999999998875
No 33
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.92 E-value=7.8e-25 Score=186.40 Aligned_cols=137 Identities=24% Similarity=0.370 Sum_probs=110.3
Q ss_pred CcCCCCCCe-EEEEEee----eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCC
Q 046552 38 KGCLDPEKF-NEFKLIK----RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQ 112 (191)
Q Consensus 38 ~~~l~p~~~-~~~~l~~----~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~ 112 (191)
...++++.. ..+++.+ +.+.++||||+.++++. .+ .||||+++.|.+++.++|+||+. |.+|++|++++
T Consensus 13 ~~~~t~d~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~-~~---~~pySias~p~~~~~l~l~Ik~~--G~~S~~L~~l~ 86 (289)
T PRK08345 13 VYDLTEREKLFLLRFEDPELAESFTFKPGQFVQVTIPG-VG---EVPISICSSPTRKGFFELCIRRA--GRVTTVIHRLK 86 (289)
T ss_pred EEecCCCCCEEEEEEeCccccCCCCcCCCCEEEEEcCC-CC---ceeeEecCCCCCCCEEEEEEEeC--ChHHHHHHhCC
Confidence 445677642 2444432 24679999999999872 22 38999999988778999999986 89999999999
Q ss_pred CCCEEEEeCCCCCccccccccccc-eEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 113 EGDYLPLKGPDPSRRFDSLLLKGR-FKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 113 ~Gd~v~i~gP~~~~~~~~~~~~G~-~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
+||+|.++|| +|. +..+....++++|||||||||||++|+++++++.....+++|+|++|+.+|++++
T Consensus 87 ~Gd~v~v~gP-----------~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r~~~d~~~~ 155 (289)
T PRK08345 87 EGDIVGVRGP-----------YGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAKYYEDLLFY 155 (289)
T ss_pred CCCEEEEeCC-----------CCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecCCHHHhhHH
Confidence 9999999999 998 5444334478999999999999999999988765335789999999999998763
No 34
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.92 E-value=8e-25 Score=179.47 Aligned_cols=138 Identities=20% Similarity=0.303 Sum_probs=110.8
Q ss_pred cCCCCCCeEEEEEe-eee---cCCCCCcEEEEEeeCCC---------------CCeeeeeeecCcCCCCC---CEEEEEE
Q 046552 39 GCLDPEKFNEFKLI-KRI---LGLPIGQHISCRGRDDL---------------GEEVIKPYTPATLDSDI---GYFELVI 96 (191)
Q Consensus 39 ~~l~p~~~~~~~l~-~~~---~~~~pGQ~v~l~~~~~~---------------g~~~~rpyT~~s~~~~~---~~l~l~V 96 (191)
..++++.. .|++. +.. +.|+|||||.|+++... ++...|+|||+|.|.+. +.++|+|
T Consensus 4 ~~~s~~v~-~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~v 82 (220)
T cd06197 4 EVITPTLT-RFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITV 82 (220)
T ss_pred eeccccee-EEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEE
Confidence 45666664 45553 233 89999999999987311 23467999999998764 7999999
Q ss_pred EEeCCCccccccccCC--C---CCEEEEeCCCCCccccccccccceEeCC---CCCceEEEEecCCCHHHHHHHHHHHHh
Q 046552 97 KMYPQGRMSHHVHELQ--E---GDYLPLKGPDPSRRFDSLLLKGRFKYQP---GQVEAFGTLTGDTGIAPMFQVARAILE 168 (191)
Q Consensus 97 k~~~~G~~S~~L~~l~--~---Gd~v~i~gP~~~~~~~~~~~~G~~~~~~---~~~~~lvlIagGtGItP~~~il~~l~~ 168 (191)
|.. |.+|++|+++. + |+++.++|| +|.|.+.. ...++++||||||||||++++++++++
T Consensus 83 k~~--G~~T~~L~~~~~~~~~~G~~v~v~gP-----------~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~ 149 (220)
T cd06197 83 RKK--GPVTGFLFQVARRLREQGLEVPVLGV-----------GGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILS 149 (220)
T ss_pred EeC--CCCCHHHHHhhhcccCCCceEEEEec-----------CCcccCCcccccCCceEEEEecccchhhHHHHHHHHHh
Confidence 988 89999997653 3 999999999 99988765 346799999999999999999999987
Q ss_pred CCCCCceEEEEEeeCCCCceec
Q 046552 169 NPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 169 ~~~~~~~i~Li~~~r~~~di~~ 190 (191)
++++..+++|+|++|+.+|+++
T Consensus 150 ~~~~~~~v~l~~~~r~~~~~~~ 171 (220)
T cd06197 150 SRNTTWDITLLWSLREDDLPLV 171 (220)
T ss_pred cccCCCcEEEEEEecchhhHHH
Confidence 6544578999999999998765
No 35
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.92 E-value=1.3e-24 Score=179.09 Aligned_cols=138 Identities=25% Similarity=0.406 Sum_probs=114.7
Q ss_pred cCCCCCCeE-EEEEeee---ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCCC
Q 046552 39 GCLDPEKFN-EFKLIKR---ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQE 113 (191)
Q Consensus 39 ~~l~p~~~~-~~~l~~~---~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~ 113 (191)
..++++.+. .+++.+. .+.++||||+.++++ .++....|+||+++.+.+. .++|+||..++|.+|.||. ++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~-~~g~~~~r~ysi~s~~~~~-~l~~~i~~~~~G~~s~~l~~~~~~ 87 (241)
T cd06214 10 VRETADAVSITFDVPEELRDAFRYRPGQFLTLRVP-IDGEEVRRSYSICSSPGDD-ELRITVKRVPGGRFSNWANDELKA 87 (241)
T ss_pred EecCCCeEEEEEecCcccCCCCCcCCCCeEEEEee-cCCCeeeeeeeecCCCCCC-cEEEEEEEcCCCccchhHHhccCC
Confidence 345555542 3443222 158999999999998 4466788999999988764 8999999999999999996 8999
Q ss_pred CCEEEEeCCCCCccccccccccceEeCCC-CCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 114 GDYLPLKGPDPSRRFDSLLLKGRFKYQPG-QVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 114 Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~-~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
||++.|+|| +|.+.+.++ ..++++||||||||||+++++++++++. +..+++|+|++|+.+|+++
T Consensus 88 G~~v~i~gP-----------~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~-~~~~v~l~~~~r~~~~~~~ 153 (241)
T cd06214 88 GDTLEVMPP-----------AGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALARE-PASRVTLVYGNRTEASVIF 153 (241)
T ss_pred CCEEEEeCC-----------ccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhH
Confidence 999999999 999988776 5789999999999999999999998765 2578999999999998764
No 36
>PRK05713 hypothetical protein; Provisional
Probab=99.92 E-value=8.4e-25 Score=187.87 Aligned_cols=135 Identities=26% Similarity=0.408 Sum_probs=112.0
Q ss_pred CCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEE
Q 046552 40 CLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLP 118 (191)
Q Consensus 40 ~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~ 118 (191)
.++++.+ .+++. +..+.|+||||+.|+.+ + ...|+||++|.|.+.+.++|+||.+++|.+|.+|+++++||+|.
T Consensus 101 ~~t~dv~-~l~l~~~~~~~~~~GQfv~l~~~---~-~~~R~ySias~p~~~~~l~~~I~~~~~G~~s~~l~~l~~Gd~v~ 175 (312)
T PRK05713 101 WLGGDVL-RLRLEPERPLRYRAGQHLVLWTA---G-GVARPYSLASLPGEDPFLEFHIDCSRPGAFCDAARQLQVGDLLR 175 (312)
T ss_pred cCCCCEE-EEEEccCCcCCcCCCCEEEEecC---C-CcccccccCcCCCCCCeEEEEEEEcCCCccchhhhcCCCCCEEE
Confidence 4566654 34442 34679999999999875 2 35799999999987789999999999999999999999999999
Q ss_pred EeCCCCCcccccccccc-ceEeCCC-CCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 119 LKGPDPSRRFDSLLLKG-RFKYQPG-QVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 119 i~gP~~~~~~~~~~~~G-~~~~~~~-~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
+.+| .| .+.+++. ..++++|||||||||||++|++++++.+ +..+++|+|++|+.+|++++
T Consensus 176 l~~p-----------~gg~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~-~~~~v~l~~g~r~~~d~~~~ 238 (312)
T PRK05713 176 LGEL-----------RGGALHYDPDWQERPLWLLAAGTGLAPLWGILREALRQG-HQGPIRLLHLARDSAGHYLA 238 (312)
T ss_pred EccC-----------CCCceEecCCCCCCcEEEEecCcChhHHHHHHHHHHhcC-CCCcEEEEEEcCchHHhhhH
Confidence 9999 76 4555543 4578999999999999999999998765 34689999999999998763
No 37
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.92 E-value=1.5e-24 Score=182.92 Aligned_cols=138 Identities=17% Similarity=0.183 Sum_probs=115.4
Q ss_pred cCCCCCCeEEEEEe--e-eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCC-CCEEEEEEEEeCC---------Cccc
Q 046552 39 GCLDPEKFNEFKLI--K-RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSD-IGYFELVIKMYPQ---------GRMS 105 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~-~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~-~~~l~l~Vk~~~~---------G~~S 105 (191)
..=+|+....+++. + ..+.|+||||+.+.++ +....|+|||+|.|++ .+.++|+||..++ |.+|
T Consensus 10 ~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S 86 (267)
T cd06182 10 PPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPP---NPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCS 86 (267)
T ss_pred CCCCCCceEEEEEecCCCCcCccCCCCEEEEecC---CCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchh
Confidence 34456666666663 2 5789999999999876 4456799999999864 5899999999865 9999
Q ss_pred cccccCCCCCEEEEeCCCCCcccccccccc-ceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhC---CCCCceEEEEEe
Q 046552 106 HHVHELQEGDYLPLKGPDPSRRFDSLLLKG-RFKYQPGQVEAFGTLTGDTGIAPMFQVARAILEN---PNDKTNVYLIYA 181 (191)
Q Consensus 106 ~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G-~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~---~~~~~~i~Li~~ 181 (191)
.+|+++++||+|.+.|| .| .|.++.+..++++||||||||||+++|++++++. .....++.|+|+
T Consensus 87 ~~L~~lk~Gd~v~v~~p-----------~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g 155 (267)
T cd06182 87 NFLAGLQLGAKVTVFIR-----------PAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFG 155 (267)
T ss_pred HHHhhCCCCCEEEEEEe-----------cCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEe
Confidence 99999999999999999 99 8888776568999999999999999999999862 223468999999
Q ss_pred eCCC-Cceec
Q 046552 182 NVTF-YDILL 190 (191)
Q Consensus 182 ~r~~-~di~~ 190 (191)
+|+. +|+++
T Consensus 156 ~r~~~~d~~~ 165 (267)
T cd06182 156 CRNFASDYLY 165 (267)
T ss_pred CCCCcccccH
Confidence 9999 88875
No 38
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.92 E-value=1.2e-24 Score=181.16 Aligned_cols=136 Identities=22% Similarity=0.294 Sum_probs=111.7
Q ss_pred cCCCCCCeEEEEEe--eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCE
Q 046552 39 GCLDPEKFNEFKLI--KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~ 116 (191)
..++++.+. +++. +....++||||+.|+++..++....|+||+++.|.+++.++|+||.. |.+|++|+++++||+
T Consensus 5 ~~~t~~v~~-l~l~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~--G~~s~~l~~l~~Gd~ 81 (246)
T cd06218 5 REIADDIYR-LVLEAPEIAAAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVV--GKGTRLLSELKAGDE 81 (246)
T ss_pred eEecCCeEE-EEEeCcchhccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEE--CcchHHHhcCCCCCE
Confidence 456676653 5553 32678999999999998423456789999999987678999999988 788999999999999
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
|.|+|| +|+....++..++++||||||||||++++++++.++. .+++|+|++|+.+|++++
T Consensus 82 v~i~gP-----------~G~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~---~~v~l~~~~r~~~d~~~~ 142 (246)
T cd06218 82 LDVLGP-----------LGNGFDLPDDDGKVLLVGGGIGIAPLLFLAKQLAERG---IKVTVLLGFRSADDLFLV 142 (246)
T ss_pred EEEEec-----------CCCCcCCCCCCCcEEEEecccCHHHHHHHHHHHHhcC---CceEEEEEccchhhhhhH
Confidence 999999 9973333345689999999999999999999997643 589999999999998763
No 39
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.92 E-value=1.7e-24 Score=192.43 Aligned_cols=140 Identities=21% Similarity=0.326 Sum_probs=115.3
Q ss_pred CcCCCCCCeEEEEEe--e-eecCCCCCcEEEEEeeCC----------------------------CCCeeeeeeecCcCC
Q 046552 38 KGCLDPEKFNEFKLI--K-RILGLPIGQHISCRGRDD----------------------------LGEEVIKPYTPATLD 86 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~--~-~~~~~~pGQ~v~l~~~~~----------------------------~g~~~~rpyT~~s~~ 86 (191)
...++++.+. ++|. + .++.|+||||+.|+++.. .++...|+|||++.|
T Consensus 141 ~~~ls~~i~~-l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p 219 (409)
T PRK05464 141 NDNVATFIKE-LVLKIPEGEEVPFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYSMANYP 219 (409)
T ss_pred cccCCchhhe-EEEecCCCCcccccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeeccCCCC
Confidence 4556777653 4442 2 367899999999998621 133578999999999
Q ss_pred CCCCEEEEEEEE---------eCCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHH
Q 046552 87 SDIGYFELVIKM---------YPQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIA 157 (191)
Q Consensus 87 ~~~~~l~l~Vk~---------~~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGIt 157 (191)
.+++.++|+||. .++|.+|.||+++++||+|.|+|| +|+|.... ..++++|||||||||
T Consensus 220 ~~~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP-----------~G~f~~~~-~~~~ivlIAgGtGIa 287 (409)
T PRK05464 220 EEKGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPGDKVTISGP-----------FGEFFAKD-TDAEMVFIGGGAGMA 287 (409)
T ss_pred CCCCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCCCEEEEEcc-----------ccCcEecC-CCceEEEEEeccChh
Confidence 887899999997 367999999999999999999999 99998764 458999999999999
Q ss_pred HHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 158 PMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 158 P~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|+++|+++++++.+...+++|+|++|+.+|+++
T Consensus 288 P~~sml~~~l~~~~~~~~v~L~~g~r~~~d~~~ 320 (409)
T PRK05464 288 PMRSHIFDQLKRLKSKRKISFWYGARSLREMFY 320 (409)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEecCCHHHhhH
Confidence 999999988776434568999999999998875
No 40
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.92 E-value=2.6e-24 Score=180.14 Aligned_cols=137 Identities=31% Similarity=0.509 Sum_probs=119.5
Q ss_pred CcCCCCCCeE-EEEEeeeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCE
Q 046552 38 KGCLDPEKFN-EFKLIKRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDY 116 (191)
Q Consensus 38 ~~~l~p~~~~-~~~l~~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~ 116 (191)
...++++.+. .++.....+.++||||+.|+.| + ...||||+++.|.++|.++|+++.++.|.+|.++..+++||.
T Consensus 15 ~~~is~~~~~l~~~~~~~~~~~~pGQfv~l~~~---~-~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T~~i~~~k~gd~ 90 (252)
T COG0543 15 KEEISPDTFLLRLRLPFVALTFKPGQFVMLRVP---G-GVRRPYSLASAPDDKGELELHIRVYEVGKVTKYIFGLKEGDK 90 (252)
T ss_pred EEEecCceEEEEEeccccccccCCCcEEEEEeC---C-CcEEEeeeccCCCcCCcEEEEEEEEeCChHHHHHhhccCCCE
Confidence 4456676654 3333222268999999999998 3 678999999999988999999999999999999999999999
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|.++|| +|++...++..+++++||||||+||++++++++.+++ +..+|+++|++|+++|+++
T Consensus 91 i~v~GP-----------~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~-~~~~V~~~~G~~~~~dl~~ 152 (252)
T COG0543 91 IRVRGP-----------LGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG-DANKVTLLYGARTAKDLLL 152 (252)
T ss_pred EEEEcC-----------CCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC-CCceEEEEEeccChhhccc
Confidence 999999 9999888777677999999999999999999999887 7789999999999999986
No 41
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.91 E-value=2.9e-24 Score=179.48 Aligned_cols=135 Identities=26% Similarity=0.357 Sum_probs=109.7
Q ss_pred CCCCCCeE-EEEEeee---ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCC
Q 046552 40 CLDPEKFN-EFKLIKR---ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGD 115 (191)
Q Consensus 40 ~l~p~~~~-~~~l~~~---~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd 115 (191)
.++++... .+++... .+.++||||+.++++. .+ .||||+++.|.+++.++|+||+. |.+|++|+++++||
T Consensus 6 ~~t~~v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~-~~---~~pySi~s~~~~~~~l~~~Ik~~--G~~S~~L~~l~~G~ 79 (253)
T cd06221 6 DETEDIKTFTLRLEDDDEELFTFKPGQFVMLSLPG-VG---EAPISISSDPTRRGPLELTIRRV--GRVTEALHELKPGD 79 (253)
T ss_pred eccCCceEEEEEeCCCccccCCcCCCCEEEEEcCC-CC---ccceEecCCCCCCCeEEEEEEeC--ChhhHHHHcCCCCC
Confidence 45555432 3444332 4889999999999872 22 38999999998778999999986 88999999999999
Q ss_pred EEEEeCCCCCccccccccccceEeCCC-CCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 116 YLPLKGPDPSRRFDSLLLKGRFKYQPG-QVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 116 ~v~i~gP~~~~~~~~~~~~G~~~~~~~-~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
++.++|| +|++...+. ..++++||||||||||+++|+++++++.++..+++|+|++|+.+|++++
T Consensus 80 ~v~i~gP-----------~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r~~~~~~~~ 145 (253)
T cd06221 80 TVGLRGP-----------FGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGARTPEDLLFK 145 (253)
T ss_pred EEEEECC-----------cCCCcccccccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecCChHHcchH
Confidence 9999999 998543332 5689999999999999999999999765445789999999999998763
No 42
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.91 E-value=3.4e-24 Score=180.22 Aligned_cols=131 Identities=26% Similarity=0.398 Sum_probs=108.7
Q ss_pred cCCCCCCeEEEEEeeeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEE
Q 046552 39 GCLDPEKFNEFKLIKRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLP 118 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~ 118 (191)
..++++.+ .|++.. +..++||||+.++++. .+ .||||+++.+ ++.++|+||+. |.+|++|+++++||+|.
T Consensus 16 ~~~t~~~~-~~~l~~-~~~~~pGQfi~l~~~~-~~---~~pySi~~~~--~~~~~~~Ik~~--G~~S~~L~~l~~Gd~v~ 85 (263)
T PRK08221 16 TKHTDIEY-TFRVEV-DGPVKPGQFFEVSLPK-VG---EAPISVSDYG--DGYIDLTIRRV--GKVTDEIFNLKEGDKLF 85 (263)
T ss_pred eccCCcEE-EEEecC-CCCCCCCceEEEEeCC-CC---cceeeccCCC--CCEEEEEEEeC--CchhhHHHhCCCCCEEE
Confidence 34566654 577643 4689999999999882 22 2899998875 47899999987 89999999999999999
Q ss_pred EeCCCCCccccccccccc-eEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 119 LKGPDPSRRFDSLLLKGR-FKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 119 i~gP~~~~~~~~~~~~G~-~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
++|| +|+ |.++....++++||||||||||++++++++++++++.++++|+|++|+.+|+++
T Consensus 86 v~gP-----------~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r~~~~l~~ 147 (263)
T PRK08221 86 LRGP-----------YGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFKNPDDILF 147 (263)
T ss_pred EECC-----------CCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhH
Confidence 9999 998 666555557999999999999999999999876544568999999999999876
No 43
>PRK08051 fre FMN reductase; Validated
Probab=99.91 E-value=3.6e-24 Score=176.45 Aligned_cols=135 Identities=13% Similarity=0.178 Sum_probs=112.3
Q ss_pred cCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccc-ccCCCCCE
Q 046552 39 GCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHV-HELQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L-~~l~~Gd~ 116 (191)
..++++.+ .+++. +..+.++||||+.++++. ...||||++|.|.+++.++|.||..++|..+.++ .++++||+
T Consensus 11 ~~~~~~~~-~l~l~~~~~~~~~pGQ~v~l~~~~----~~~r~ySias~p~~~~~l~~~v~~~~~~~~~~~~~~~l~~G~~ 85 (232)
T PRK08051 11 EAITDTVY-RVRLVPEAPFSFRAGQYLMVVMGE----KDKRPFSIASTPREKGFIELHIGASELNLYAMAVMERILKDGE 85 (232)
T ss_pred ecCCCCeE-EEEEecCCCCccCCCCEEEEEcCC----CcceeecccCCCCCCCcEEEEEEEcCCCcchHHHHHHcCCCCE
Confidence 34566664 45553 346789999999999862 2469999999987668899999998877776665 78999999
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|.++|| +|.+.+.+...++++||||||||||++++++++++.+ ...++.|+|++|+.+|+++
T Consensus 86 v~v~gP-----------~G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~~-~~~~v~l~~g~r~~~~~~~ 147 (232)
T PRK08051 86 IEVDIP-----------HGDAWLREESERPLLLIAGGTGFSYARSILLTALAQG-PNRPITLYWGGREEDHLYD 147 (232)
T ss_pred EEEEcC-----------CCceEccCCCCCcEEEEecCcCcchHHHHHHHHHHhC-CCCcEEEEEEeccHHHhhh
Confidence 999999 9999877666689999999999999999999998765 3578999999999998875
No 44
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.91 E-value=2.3e-24 Score=191.35 Aligned_cols=138 Identities=20% Similarity=0.340 Sum_probs=112.4
Q ss_pred CCCCCCeEEEEEe--e-eecCCCCCcEEEEEeeCC----------------------------CCCeeeeeeecCcCCCC
Q 046552 40 CLDPEKFNEFKLI--K-RILGLPIGQHISCRGRDD----------------------------LGEEVIKPYTPATLDSD 88 (191)
Q Consensus 40 ~l~p~~~~~~~l~--~-~~~~~~pGQ~v~l~~~~~----------------------------~g~~~~rpyT~~s~~~~ 88 (191)
.++++.+. +.|. + .++.|+||||+.+.++.. .+....|+||++|.|.+
T Consensus 139 ~~s~~i~~-l~l~~~~~~~~~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~ 217 (405)
T TIGR01941 139 NVATFIKE-LVLKLPDGESVPFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYSMANYPAE 217 (405)
T ss_pred cccchhhe-EEEecCCCceeeecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeecCCCCCCC
Confidence 45555543 4442 2 357899999999998621 12356799999999988
Q ss_pred CCEEEEEEEE---------eCCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHH
Q 046552 89 IGYFELVIKM---------YPQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPM 159 (191)
Q Consensus 89 ~~~l~l~Vk~---------~~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~ 159 (191)
.+.++|+||. .++|.+|.||+++++||+|.++|| +|+|...+ ..++++|||||||||||
T Consensus 218 ~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP-----------~G~f~l~~-~~~~lvlIAgGtGIaP~ 285 (405)
T TIGR01941 218 KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPGDKVTISGP-----------FGEFFAKD-TDAEMVFIGGGAGMAPM 285 (405)
T ss_pred CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCcCEEEEEec-----------cCCCeecC-CCCCEEEEecCcCcchH
Confidence 8899999997 578999999999999999999999 99998764 45789999999999999
Q ss_pred HHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 160 FQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 160 ~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
++|+++++++.+...+++|+|++|+.+|+++
T Consensus 286 lsmi~~~l~~~~~~~~v~l~~g~R~~~dl~~ 316 (405)
T TIGR01941 286 RSHIFDQLKRLKSKRKISFWYGARSLREMFY 316 (405)
T ss_pred HHHHHHHHhcCCCCCeEEEEEecCCHHHHhH
Confidence 9999987765333468999999999998875
No 45
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.91 E-value=5e-24 Score=182.92 Aligned_cols=136 Identities=17% Similarity=0.179 Sum_probs=108.2
Q ss_pred CCCeEEEEEe-eeecCCCCCcEEEEEeeCC----CCC-eeeeeeecCcCCCCC----CEEEEEEEEe-------------
Q 046552 43 PEKFNEFKLI-KRILGLPIGQHISCRGRDD----LGE-EVIKPYTPATLDSDI----GYFELVIKMY------------- 99 (191)
Q Consensus 43 p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~----~g~-~~~rpyT~~s~~~~~----~~l~l~Vk~~------------- 99 (191)
++. ..++|. +..+.|.||||+.+..+.. +|. ...|+|||+|.|.+. ..++|+||+.
T Consensus 42 ~~v-~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~ 120 (307)
T PLN03116 42 GET-CHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPA 120 (307)
T ss_pred Cce-EEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCc
Confidence 443 445552 4578999999999986521 122 247999999998432 3799999986
Q ss_pred CCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCC--CCCceEEEEecCCCHHHHHHHHHHHHhCCC----CC
Q 046552 100 PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQP--GQVEAFGTLTGDTGIAPMFQVARAILENPN----DK 173 (191)
Q Consensus 100 ~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~--~~~~~lvlIagGtGItP~~~il~~l~~~~~----~~ 173 (191)
++|.+|.||+++++||+|.|+|| +|.+...+ +..++++|||||||||||++|+++++.+.. ..
T Consensus 121 ~~G~~S~~L~~l~~Gd~v~v~gP-----------~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~ 189 (307)
T PLN03116 121 KKGVCSNFLCDAKPGDKVQITGP-----------SGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFG 189 (307)
T ss_pred cCcchhhhHhhCCCCCEEEEEEe-----------cCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCC
Confidence 68999999988999999999999 99987743 345789999999999999999999876431 13
Q ss_pred ceEEEEEeeCCCCceec
Q 046552 174 TNVYLIYANVTFYDILL 190 (191)
Q Consensus 174 ~~i~Li~~~r~~~di~~ 190 (191)
.+++|+|++|+.+|++|
T Consensus 190 ~~v~L~~g~R~~~d~~~ 206 (307)
T PLN03116 190 GLAWLFLGVANSDSLLY 206 (307)
T ss_pred CcEEEEEecCCcccchH
Confidence 57999999999999876
No 46
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.91 E-value=8.6e-24 Score=179.61 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=108.6
Q ss_pred CeEEEEEe-eeecCCCCCcEEEEEeeCC---CCC-eeeeeeecCcCCCC----CCEEEEEEEEeCC----------Cccc
Q 046552 45 KFNEFKLI-KRILGLPIGQHISCRGRDD---LGE-EVIKPYTPATLDSD----IGYFELVIKMYPQ----------GRMS 105 (191)
Q Consensus 45 ~~~~~~l~-~~~~~~~pGQ~v~l~~~~~---~g~-~~~rpyT~~s~~~~----~~~l~l~Vk~~~~----------G~~S 105 (191)
....++|. +..+.|+||||+.|..+.. +|. ...|+|||+|.|.+ .+.++|+||..++ |.+|
T Consensus 27 ~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S 106 (286)
T cd06208 27 EVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCS 106 (286)
T ss_pred ceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchH
Confidence 33445553 4478999999999986511 122 34799999998753 4789999999876 9999
Q ss_pred cccccCCCCCEEEEeCCCCCccccccccccceEeCCC-CCceEEEEecCCCHHHHHHHHHHHHhCC----CCCceEEEEE
Q 046552 106 HHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPG-QVEAFGTLTGDTGIAPMFQVARAILENP----NDKTNVYLIY 180 (191)
Q Consensus 106 ~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~-~~~~lvlIagGtGItP~~~il~~l~~~~----~~~~~i~Li~ 180 (191)
.||+++++||+|.++|| +|.+...+. ..++++|||||||||||++++++++++. +...+++|+|
T Consensus 107 ~~L~~l~~Gd~v~v~gP-----------~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~ 175 (286)
T cd06208 107 NYLCDLKPGDDVQITGP-----------VGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFF 175 (286)
T ss_pred HHHhhCCCCCEEEEEee-----------cCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEE
Confidence 99999999999999999 999876653 3468999999999999999999988651 2346899999
Q ss_pred eeCCCCceec
Q 046552 181 ANVTFYDILL 190 (191)
Q Consensus 181 ~~r~~~di~~ 190 (191)
++|+.+|+++
T Consensus 176 g~r~~~d~~~ 185 (286)
T cd06208 176 GVPNSDSLLY 185 (286)
T ss_pred EecCccchhH
Confidence 9999999876
No 47
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.90 E-value=8.3e-24 Score=179.44 Aligned_cols=131 Identities=24% Similarity=0.333 Sum_probs=108.4
Q ss_pred cCCCCCCeEEEEEeee--ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCE
Q 046552 39 GCLDPEKFNEFKLIKR--ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~~--~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~ 116 (191)
..++++.+. +++... ...++||||+.++++ .. ...||||+++.+.+++.++|+||.. |.+|++|+++++||+
T Consensus 8 ~~~t~~~~~-l~l~~~~~~~~~~pGQfv~l~~~-~~--~~~rpySias~~~~~~~i~l~vk~~--G~~T~~L~~l~~Gd~ 81 (281)
T PRK06222 8 EELAPNVFL-MEIEAPRVAKKAKPGQFVIVRID-EK--GERIPLTIADYDREKGTITIVFQAV--GKSTRKLAELKEGDS 81 (281)
T ss_pred EEecCCEEE-EEEeCchhhccCCCCeEEEEEeC-CC--CCceeeEeeEEcCCCCEEEEEEEeC--CcHHHHHhcCCCCCE
Confidence 356676654 555322 357999999999986 22 3468999999887778999999987 899999999999999
Q ss_pred E-EEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 L-PLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v-~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
| .++|| +|++...+. .+++++||||+||||++++++++.+++ .+++++|++|+.+|+++
T Consensus 82 v~~i~GP-----------~G~~~~~~~-~~~~llIaGGiGiaPl~~l~~~l~~~~---~~v~l~~g~r~~~d~~~ 141 (281)
T PRK06222 82 ILDVVGP-----------LGKPSEIEK-FGTVVCVGGGVGIAPVYPIAKALKEAG---NKVITIIGARNKDLLIL 141 (281)
T ss_pred EeeEEcC-----------CCCCcccCC-CCeEEEEeCcCcHHHHHHHHHHHHHCC---CeEEEEEecCCHHHhhc
Confidence 9 79999 998765433 479999999999999999999987654 37999999999999876
No 48
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.90 E-value=2e-23 Score=168.72 Aligned_cols=132 Identities=22% Similarity=0.319 Sum_probs=108.8
Q ss_pred cCCCCCCeEEEEEeee-e---cCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCc-cccccc-cCC
Q 046552 39 GCLDPEKFNEFKLIKR-I---LGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGR-MSHHVH-ELQ 112 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~~-~---~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~-~S~~L~-~l~ 112 (191)
..++++.+ ++++... . ..|+||||+.++++. ...|+|||++.|.+.+.++|+||.+++|. +|.||+ .++
T Consensus 4 ~~~~~~~~-~~~l~~~~~~~~~~~~pGQ~~~l~~~~----~~~r~ySi~s~~~~~~~l~~~v~~~~~g~~~s~~l~~~~~ 78 (211)
T cd06185 4 RDEAPDIR-SFELEAPDGAPLPAFEPGAHIDVHLPN----GLVRQYSLCGDPADRDRYRIAVLREPASRGGSRYMHELLR 78 (211)
T ss_pred EEcCCCeE-EEEEEeCCCCcCCCCCCCceEEEEcCC----CCceeeeccCCCCCCCEEEEEEEeccCCCchHHHHHhcCC
Confidence 35666664 4565332 2 489999999999872 45799999999987789999999998765 899995 689
Q ss_pred CCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 113 EGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 113 ~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+||+|.++|| +|.+.+.+. .++++||||||||||++++++++.+.. .+++++|++|+.+|+++
T Consensus 79 ~Gd~v~i~gP-----------~g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~~~---~~v~l~~~~r~~~~~~~ 141 (211)
T cd06185 79 VGDELEVSAP-----------RNLFPLDEA-ARRHLLIAGGIGITPILSMARALAARG---ADFELHYAGRSREDAAF 141 (211)
T ss_pred CCCEEEEcCC-----------ccCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHhCC---CCEEEEEEeCCCcchhH
Confidence 9999999999 898877654 478999999999999999999987643 47999999999998764
No 49
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.90 E-value=8.8e-24 Score=175.98 Aligned_cols=131 Identities=24% Similarity=0.330 Sum_probs=108.6
Q ss_pred cCCCCCCeEEEEEe--eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCE
Q 046552 39 GCLDPEKFNEFKLI--KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~ 116 (191)
..++++.+. +++. +....++||||+.++++ .. ...||||+++.|.+.+.++|+||.. |.+|.+|.++++||+
T Consensus 7 ~~~t~d~~~-~~l~~~~~~~~~~pGQf~~l~~~-~~--~~~~pySi~s~~~~~~~~~~~vk~~--G~~t~~l~~l~~G~~ 80 (248)
T cd06219 7 EELAPNVKL-FEIEAPLIAKKAKPGQFVIVRAD-EK--GERIPLTIADWDPEKGTITIVVQVV--GKSTRELATLEEGDK 80 (248)
T ss_pred EEeCCCeEE-EEEEChhhhccCCCCcEEEEEcC-CC--CCccceEeEEEcCCCCEEEEEEEeC--CchHHHHHhcCCCCE
Confidence 356677654 5553 22468999999999986 22 3468999999887778999999987 889999999999999
Q ss_pred E-EEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 L-PLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v-~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+ .++|| +|.+...++ .++++|||||+||||++++++++.+.+ .+++|+|++|+.+|+++
T Consensus 81 v~~i~gP-----------~G~~~~~~~-~~~~lliagG~GiaP~~~~l~~~~~~~---~~v~l~~~~r~~~~~~~ 140 (248)
T cd06219 81 IHDVVGP-----------LGKPSEIEN-YGTVVFVGGGVGIAPIYPIAKALKEAG---NRVITIIGARTKDLVIL 140 (248)
T ss_pred eeeeecC-----------CCCCeecCC-CCeEEEEeCcccHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhh
Confidence 9 69999 999866543 579999999999999999999987654 48999999999999875
No 50
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.90 E-value=1.8e-23 Score=178.17 Aligned_cols=116 Identities=24% Similarity=0.345 Sum_probs=98.7
Q ss_pred ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEEEeC-CCCCcccccccc
Q 046552 55 ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKG-PDPSRRFDSLLL 133 (191)
Q Consensus 55 ~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~g-P~~~~~~~~~~~ 133 (191)
...|+||||+.+..+ |....|+|||+|.|.+ +.++|+||++++|.+|.||+++++||+|.+.+ |
T Consensus 81 ~~~~~pGQ~v~v~~~---g~~~~R~YSias~p~~-g~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~v~~~~----------- 145 (289)
T cd06201 81 LPSFEAGDLLGILPP---GSDVPRFYSLASSSSD-GFLEICVRKHPGGLCSGYLHGLKPGDTIKAFIRP----------- 145 (289)
T ss_pred CCCcCccCEEEEecC---CCCCCceEecCCCCCC-CeEEEEEEeCCCccchhhHhhCCCcCEEEEEecc-----------
Confidence 577999999999754 5566799999999854 89999999999999999999999999999985 6
Q ss_pred ccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCC-ceec
Q 046552 134 KGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFY-DILL 190 (191)
Q Consensus 134 ~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~-di~~ 190 (191)
.|.|.... ..++++|||||||||||++|+++.. +..+++|+|++|+.+ |++|
T Consensus 146 ~g~F~~~~-~~~~lvlIAgGtGIaP~~s~l~~~~----~~~~v~L~~g~r~~~~d~~~ 198 (289)
T cd06201 146 NPSFRPAK-GAAPVILIGAGTGIAPLAGFIRANA----ARRPMHLYWGGRDPASDFLY 198 (289)
T ss_pred CCCccCCC-CCCCEEEEecCcCHHHHHHHHHhhh----ccCCEEEEEEecCcccchHH
Confidence 77887653 4578999999999999999999853 235799999999985 7765
No 51
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.90 E-value=1.6e-23 Score=176.02 Aligned_cols=129 Identities=27% Similarity=0.435 Sum_probs=106.8
Q ss_pred CCCCCeEEEEEeeeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEEEe
Q 046552 41 LDPEKFNEFKLIKRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLK 120 (191)
Q Consensus 41 l~p~~~~~~~l~~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~ 120 (191)
.+++.| .|++ +....++||||+.++++. .+ .||||+++.+ .+.++|+||+. |.+|.+|+++++||+|.++
T Consensus 16 ~t~~~~-~~~~-~~~~~~~pGQ~v~l~~~~-~~---~~pySi~~~~--~~~l~~~Vk~~--G~~S~~L~~l~~Gd~v~i~ 85 (261)
T TIGR02911 16 HTDIEY-TFRM-SYDGPVKPGQFFEVSLPK-YG---EAPISVSGIG--EGYIDLTIRRV--GKVTDEVFTLKEGDNLFLR 85 (261)
T ss_pred ccCCEE-EEEc-CCCCCCCCCcEEEEEecC-CC---ccceecCCCC--CCeEEEEEEeC--chhhHHHHcCCCCCEEEEe
Confidence 345544 4666 345789999999999883 22 3899998853 47899999987 8999999999999999999
Q ss_pred CCCCCccccccccccc-eEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 121 GPDPSRRFDSLLLKGR-FKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 121 gP~~~~~~~~~~~~G~-~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|| +|+ |..++...++++||||||||||+++|+++++++.++.++++|+|++|+.+|+++
T Consensus 86 gP-----------~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r~~~~~~~ 145 (261)
T TIGR02911 86 GP-----------YGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFKTPDDILF 145 (261)
T ss_pred cC-----------CCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecCCHHHhhH
Confidence 99 998 655555568999999999999999999999876544578999999999999875
No 52
>PRK05802 hypothetical protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=181.29 Aligned_cols=133 Identities=15% Similarity=0.221 Sum_probs=107.0
Q ss_pred CCCCCCeEEEEEe--ee--ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCC
Q 046552 40 CLDPEKFNEFKLI--KR--ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGD 115 (191)
Q Consensus 40 ~l~p~~~~~~~l~--~~--~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd 115 (191)
.++++.+ .+++. +. ...++||||+.|+++ ..+....||||+++.|.+++.++|+||.. |.+|++|+++++||
T Consensus 74 ~~t~dv~-~l~l~~p~~~~~~~~~PGQFv~l~~~-~~~~~~~rP~SI~~~~~~~g~l~l~ik~~--G~~T~~L~~l~~Gd 149 (320)
T PRK05802 74 NIEDNLI-ILTLKVPHKLARDLVYPGSFVFLRNK-NSSSFFDVPISIMEADTEENIIKVAIEIR--GVKTKKIAKLNKGD 149 (320)
T ss_pred EecCCEE-EEEEECCchhhhccCCCCceEEEEEc-CCCCEeEEeeEecccCCCCCEEEEEEEec--ChhHHHHhcCCCCC
Confidence 4555554 34442 21 134799999999987 33456679999999988889999999985 99999999999999
Q ss_pred EEEEeCCCCCccccccccccc--eEeC---CCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 116 YLPLKGPDPSRRFDSLLLKGR--FKYQ---PGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 116 ~v~i~gP~~~~~~~~~~~~G~--~~~~---~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+|.|+|| +|+ |.+. ....+++++||||+||||++++++++++++ .+++++|++|+.+|+++
T Consensus 150 ~l~v~GP-----------~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~---~~v~li~g~r~~~~~~~ 215 (320)
T PRK05802 150 EILLRGP-----------YWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYSNG---NKIIVIIDKGPFKNNFI 215 (320)
T ss_pred EEEEeCC-----------CCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHHcC---CcEEEEEeCCCHHHHHH
Confidence 9999999 854 4332 233468999999999999999999998765 37999999999998875
No 53
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.90 E-value=3.6e-23 Score=203.63 Aligned_cols=155 Identities=26% Similarity=0.465 Sum_probs=123.8
Q ss_pred ecCCCcCCCCCCeEEEEEeee----------------------ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCE
Q 046552 34 TKKPKGCLDPEKFNEFKLIKR----------------------ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGY 91 (191)
Q Consensus 34 ~~~~~~~l~p~~~~~~~l~~~----------------------~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~ 91 (191)
.++++..|++..|..++|.+. .++++|||||.|+.+ +++....|+|||+|.|.+.+.
T Consensus 902 ~~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~~~~pGQfv~l~~~-~~g~~~~R~YS~~S~p~~~~~ 980 (1167)
T PTZ00306 902 LQKKKYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRSGLTLGQFIAIRGD-WDGQQLIGYYSPITLPDDLGV 980 (1167)
T ss_pred HhccCcccCCCceEEEEEEEEeccccccCCeEEEEEECCCcccccCCCCCeEEEEEee-eCCeEEEEEeccCCCCCCCCe
Confidence 345667777778877777542 257999999999987 457778999999999988889
Q ss_pred EEEEEEEeCCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCC-
Q 046552 92 FELVIKMYPQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENP- 170 (191)
Q Consensus 92 l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~- 170 (191)
++|+|| .++|.+|+||+++++||+|.|+||++ +..+-++..+.|.++....++++|||||||||||++|++++++++
T Consensus 981 i~l~Vr-~~~G~~S~~L~~l~~Gd~v~v~gp~G-~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~~ 1058 (1167)
T PTZ00306 981 ISILAR-GDKGTLKEWISALRPGDSVEMKACGG-LRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKPY 1058 (1167)
T ss_pred EEEEEE-cCCChhHHHHhhCCCCCEEEEeCCcC-ccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCcc
Confidence 999997 56799999999999999999999832 222211223456666666789999999999999999999998765
Q ss_pred -CCCceEEEEEeeCCCCceecC
Q 046552 171 -NDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 171 -~~~~~i~Li~~~r~~~di~~~ 191 (191)
++.++++|+|++|+.+|++|+
T Consensus 1059 ~~~~~~i~Llyg~r~~~dl~~~ 1080 (1167)
T PTZ00306 1059 VDSIESIRLIYAAEDVSELTYR 1080 (1167)
T ss_pred cCCCceEEEEEEeCCHHHhhHH
Confidence 234689999999999998864
No 54
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.90 E-value=3.3e-23 Score=172.44 Aligned_cols=134 Identities=18% Similarity=0.209 Sum_probs=106.9
Q ss_pred cCCCCC----CeEEEEEee--eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCC-----Cccccc
Q 046552 39 GCLDPE----KFNEFKLIK--RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQ-----GRMSHH 107 (191)
Q Consensus 39 ~~l~p~----~~~~~~l~~--~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~-----G~~S~~ 107 (191)
..++++ ....++|.. ....|+||||+.|..+ +....|+|||+|.|.+ +.++|+||+.++ |.+|.|
T Consensus 7 ~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~---~~~~~R~YSIas~p~~-~~l~l~Vk~~~~~~~~~G~~S~~ 82 (245)
T cd06200 7 VLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPR---HPLPHREYSIASLPAD-GALELLVRQVRHADGGLGLGSGW 82 (245)
T ss_pred eecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCC---CCCCCcceEeccCCCC-CEEEEEEEEeccCCCCCeeechh
Confidence 355555 355666643 4678999999999965 2356799999999864 789999999876 789999
Q ss_pred ccc-CCCCCEEEEeCCCCCcccccccccc-ceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCC
Q 046552 108 VHE-LQEGDYLPLKGPDPSRRFDSLLLKG-RFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTF 185 (191)
Q Consensus 108 L~~-l~~Gd~v~i~gP~~~~~~~~~~~~G-~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~ 185 (191)
|++ +++||+|.+.|| .| .|..+. ..++++|||||||||||++|++++++++ ..++.|+|++|+.
T Consensus 83 L~~~~~~Gd~v~i~gp-----------~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~l~~g~r~~ 148 (245)
T cd06200 83 LTRHAPIGASVALRLR-----------ENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG--RHRNWLLFGERQA 148 (245)
T ss_pred hhhCCCCCCEEEEEec-----------CCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc--CCCeEEEEecCCc
Confidence 975 589999999998 55 565544 4479999999999999999999998764 2578999999998
Q ss_pred C-ceec
Q 046552 186 Y-DILL 190 (191)
Q Consensus 186 ~-di~~ 190 (191)
+ |+++
T Consensus 149 ~~d~~~ 154 (245)
T cd06200 149 AHDFFC 154 (245)
T ss_pred cccHhH
Confidence 4 7654
No 55
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.90 E-value=3.6e-23 Score=184.17 Aligned_cols=133 Identities=19% Similarity=0.232 Sum_probs=105.5
Q ss_pred EEEEEe--eeecCCCCCcEEEEEeeC--CCCC-eeeeeeecCcCCCCC----CEEEEEEEEeC--------CCccccccc
Q 046552 47 NEFKLI--KRILGLPIGQHISCRGRD--DLGE-EVIKPYTPATLDSDI----GYFELVIKMYP--------QGRMSHHVH 109 (191)
Q Consensus 47 ~~~~l~--~~~~~~~pGQ~v~l~~~~--~~g~-~~~rpyT~~s~~~~~----~~l~l~Vk~~~--------~G~~S~~L~ 109 (191)
..++|. +..+.+.||||+.|..|. .++. ...|+|||+|.+++. +.++|+||+.+ +|.+|+||+
T Consensus 163 ~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~~~~g~~~~G~~S~~L~ 242 (411)
T TIGR03224 163 HHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKRVTTDHQGNAVRGVASNYLC 242 (411)
T ss_pred EEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEEEEecCCCCcCcccchhHHh
Confidence 345553 236889999999998762 1233 367999999986431 47999999885 599999999
Q ss_pred cCCCCCEEEEeCCCCCccccccccccceEeCC-CCCceEEEEecCCCHHHHHHHHHHHHhC--CCCCceEEEEEeeCCCC
Q 046552 110 ELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQP-GQVEAFGTLTGDTGIAPMFQVARAILEN--PNDKTNVYLIYANVTFY 186 (191)
Q Consensus 110 ~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~-~~~~~lvlIagGtGItP~~~il~~l~~~--~~~~~~i~Li~~~r~~~ 186 (191)
++++||+|.++|| +|++...+ ...++++|||||||||||++|++++... .....+++|+|++|+.+
T Consensus 243 ~lk~Gd~v~v~GP-----------~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~~ 311 (411)
T TIGR03224 243 DLKKGDKVQVIGP-----------FGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGGKLMLFFGARTKE 311 (411)
T ss_pred cCCCcCEEEEEec-----------cCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCCCCEEEEEecCccc
Confidence 9999999999999 99855443 3347899999999999999999998652 12346899999999999
Q ss_pred ceec
Q 046552 187 DILL 190 (191)
Q Consensus 187 di~~ 190 (191)
|++|
T Consensus 312 dl~y 315 (411)
T TIGR03224 312 ELPY 315 (411)
T ss_pred cchH
Confidence 9876
No 56
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.89 E-value=8.4e-23 Score=179.24 Aligned_cols=127 Identities=22% Similarity=0.275 Sum_probs=102.9
Q ss_pred eecCCCCCcEEEEEeeC--CCCCe-eeeeeecCcCCC----CCCEEEEEEEEe---------CCCccccccccCCCCCEE
Q 046552 54 RILGLPIGQHISCRGRD--DLGEE-VIKPYTPATLDS----DIGYFELVIKMY---------PQGRMSHHVHELQEGDYL 117 (191)
Q Consensus 54 ~~~~~~pGQ~v~l~~~~--~~g~~-~~rpyT~~s~~~----~~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v 117 (191)
..+.+.||||+.|..+. .+|+. ..|+|||+|.+. +.+.++|+||+. ..|.+|.||+++++||+|
T Consensus 119 ~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V 198 (367)
T PLN03115 119 GEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEV 198 (367)
T ss_pred CCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCEE
Confidence 37889999999998752 23443 579999999873 246899999975 368999999999999999
Q ss_pred EEeCCCCCccccccccccceEeCC-CCCceEEEEecCCCHHHHHHHHHHHHhCCC-C---CceEEEEEeeCCCCceecC
Q 046552 118 PLKGPDPSRRFDSLLLKGRFKYQP-GQVEAFGTLTGDTGIAPMFQVARAILENPN-D---KTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 118 ~i~gP~~~~~~~~~~~~G~~~~~~-~~~~~lvlIagGtGItP~~~il~~l~~~~~-~---~~~i~Li~~~r~~~di~~~ 191 (191)
.++|| +|++.+.+ ...++++|||||||||||++++++++.... + ..+++|+|++|+.+|++|+
T Consensus 199 ~v~GP-----------~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~ 266 (367)
T PLN03115 199 KITGP-----------VGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYK 266 (367)
T ss_pred EEEee-----------cCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHHHhhHH
Confidence 99999 99877654 344689999999999999999998753321 1 3579999999999998763
No 57
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.89 E-value=6.4e-23 Score=170.89 Aligned_cols=131 Identities=18% Similarity=0.366 Sum_probs=108.9
Q ss_pred cCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEE
Q 046552 39 GCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYL 117 (191)
Q Consensus 39 ~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v 117 (191)
..++++.+ .+++. ++.+.++||||+.++++. .+....||||+++.| .++++|+||.. |.+|++|+++++||+|
T Consensus 13 ~~~t~d~~-~l~l~~~~~~~~~pGQ~v~l~~~~-~~~~~~r~ySi~s~~--~~~l~l~Vk~~--G~~t~~l~~l~~G~~v 86 (250)
T PRK00054 13 KEIAPNIY-TLVLDGEKVFDMKPGQFVMVWVPG-VEPLLERPISISDID--KNEITILYRKV--GEGTKKLSKLKEGDEL 86 (250)
T ss_pred EEecCCeE-EEEEeCccccCCCCCcEEEEEeCC-CCCcCceeeEEeeeC--CCEEEEEEEEc--ChHHHHHhcCCCCCEE
Confidence 45666665 45553 357889999999999883 344568999999988 47999999986 8999999999999999
Q ss_pred EEeCCCCCccccccccccc-eEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 118 PLKGPDPSRRFDSLLLKGR-FKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 118 ~i~gP~~~~~~~~~~~~G~-~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
.|.|| +|. |.... ..+++++|||||||||++++++++.+.+ .+++++|++|+.+|+++
T Consensus 87 ~i~gP-----------~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~---~~v~l~~~~r~~~d~~~ 145 (250)
T PRK00054 87 DIRGP-----------LGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG---VEVTTVLGARTKDEVIF 145 (250)
T ss_pred EEEcc-----------cCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC---CcEEEEEEcCCHHHhhh
Confidence 99999 997 55433 5579999999999999999999998654 37999999999998875
No 58
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.89 E-value=8.1e-23 Score=165.11 Aligned_cols=133 Identities=17% Similarity=0.192 Sum_probs=108.3
Q ss_pred CCeEEEEEee-eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCC-CCEEEEEEEEeCCCccccccccCC------CCC
Q 046552 44 EKFNEFKLIK-RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSD-IGYFELVIKMYPQGRMSHHVHELQ------EGD 115 (191)
Q Consensus 44 ~~~~~~~l~~-~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~-~~~l~l~Vk~~~~G~~S~~L~~l~------~Gd 115 (191)
+....+++.. ..+.++||||+.|+++...+...+||||+++.+.+ .+.++|+||..+ |..++.+..++ .|+
T Consensus 10 ~~~~~l~~~~~~~~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~-G~~t~~~~~~~~~~~~~~~~ 88 (210)
T cd06186 10 SDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKK-GFTTRLLRKALKSPGGGVSL 88 (210)
T ss_pred CCEEEEEEecCCCCccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecC-ChHHHHHHHHHhCcCCCcee
Confidence 4555666632 37899999999999983325567899999999876 689999999875 66777777776 899
Q ss_pred EEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCC---CCceEEEEEeeCCCCce
Q 046552 116 YLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPN---DKTNVYLIYANVTFYDI 188 (191)
Q Consensus 116 ~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~---~~~~i~Li~~~r~~~di 188 (191)
++.++|| +|.+......+++++|||||+||||+++++++++++.. ...+++|+|++|+.+|+
T Consensus 89 ~v~v~GP-----------~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~~~ 153 (210)
T cd06186 89 KVLVEGP-----------YGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDL 153 (210)
T ss_pred EEEEECC-----------CCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHHHh
Confidence 9999999 99886344456899999999999999999999987642 35789999999999884
No 59
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.89 E-value=1.5e-22 Score=166.89 Aligned_cols=124 Identities=23% Similarity=0.304 Sum_probs=104.3
Q ss_pred cCCCCCCeEEEEEeeeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEE
Q 046552 39 GCLDPEKFNEFKLIKRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLP 118 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~ 118 (191)
..++++.+ .+++. .+..++||||+.++.+.. ..|+||+++.| +.++|+||+. |.+|+||+++++||++.
T Consensus 7 ~~~t~~~~-~~~l~-~~~~~~pGQ~v~l~~~~~----~~~~~Si~s~~---~~l~~~v~~~--G~~s~~L~~l~~Gd~v~ 75 (233)
T cd06220 7 IDETPTVK-TFVFD-WDFDFKPGQFVMVWVPGV----DEIPMSLSYID---GPNSITVKKV--GEATSALHDLKEGDKLG 75 (233)
T ss_pred EEEcCCEE-EEEEe-cCCCCCCCceEEEEeCCC----CcceeEEecCC---CeEEEEEEec--ChHHHHHHhcCCCCEEE
Confidence 34566664 47773 356999999999998722 24899999998 6899999987 89999999999999999
Q ss_pred EeCCCCCccccccccccc-eEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 119 LKGPDPSRRFDSLLLKGR-FKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 119 i~gP~~~~~~~~~~~~G~-~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
++|| +|+ +..+ .++++||||||||||+++++++++++ ++++|+|++|+.+|++++
T Consensus 76 i~gP-----------~G~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~----~~i~l~~~~r~~~d~~~~ 131 (233)
T cd06220 76 IRGP-----------YGNGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA----ADVTVLLGARTKEELLFL 131 (233)
T ss_pred EECc-----------CCCCccCC---CCeEEEEecCcChHHHHHHHHHHHhc----CCEEEEEecCChHHChhH
Confidence 9999 998 5433 57999999999999999999998865 479999999999998763
No 60
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.88 E-value=1.7e-22 Score=166.84 Aligned_cols=134 Identities=18% Similarity=0.195 Sum_probs=110.3
Q ss_pred cCCCCCCeEEEEEeee----ecCCCCCcEEEEEeeCCC------------------CCeeeeeeecCcCCCCCCEEEEEE
Q 046552 39 GCLDPEKFNEFKLIKR----ILGLPIGQHISCRGRDDL------------------GEEVIKPYTPATLDSDIGYFELVI 96 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~~----~~~~~pGQ~v~l~~~~~~------------------g~~~~rpyT~~s~~~~~~~l~l~V 96 (191)
..++|+.+ ++++... ...+.||||+.+.++..+ +....|+||+++.+.+.++++|.|
T Consensus 5 ~~~s~~~~-~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~~~v 83 (235)
T cd06193 5 ERLTPHMR-RITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELDIDF 83 (235)
T ss_pred EecCCCEE-EEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEEEEE
Confidence 35666654 4555322 267899999999987332 246789999999887779999999
Q ss_pred EEeCC-CccccccccCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCce
Q 046552 97 KMYPQ-GRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTN 175 (191)
Q Consensus 97 k~~~~-G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~ 175 (191)
|.+++ |.+|+|++++++||+|.+.|| +|.+...+ ..++++||||||||||+++|++++.+. .+
T Consensus 84 ~~~~~~G~~s~~l~~l~~Gd~v~v~gP-----------~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~~----~~ 147 (235)
T cd06193 84 VLHGDEGPASRWAASAQPGDTLGIAGP-----------GGSFLPPP-DADWYLLAGDETALPAIAAILEELPAD----AR 147 (235)
T ss_pred EeCCCCCchHHHHhhCCCCCEEEEECC-----------CCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCCC----Ce
Confidence 99887 999999999999999999999 99988755 447999999999999999999987542 58
Q ss_pred EEEEEeeCCCCcee
Q 046552 176 VYLIYANVTFYDIL 189 (191)
Q Consensus 176 i~Li~~~r~~~di~ 189 (191)
++++|++++.+|++
T Consensus 148 ~~~~~~~~~~~d~~ 161 (235)
T cd06193 148 GTALIEVPDAADEQ 161 (235)
T ss_pred EEEEEEECCHHHcc
Confidence 99999999987754
No 61
>PLN02292 ferric-chelate reductase
Probab=99.85 E-value=6.4e-21 Score=178.44 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=107.7
Q ss_pred CCCeEEEEEee-eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCC-CCCEEEEEEEEeCCCcccccc-ccCCCCC----
Q 046552 43 PEKFNEFKLIK-RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDS-DIGYFELVIKMYPQGRMSHHV-HELQEGD---- 115 (191)
Q Consensus 43 p~~~~~~~l~~-~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~-~~~~l~l~Vk~~~~G~~S~~L-~~l~~Gd---- 115 (191)
+++..++++.. +...++||||+++++|. .+..++||||++|.|. +++.++++||.. |.+|++| +.+++||
T Consensus 336 ~~dvv~L~~~~~~~~~~~PGQ~vfL~~P~-~s~~q~HPFTIaSsp~~~~~~l~l~IK~~--G~~T~~L~~~l~~gd~i~~ 412 (702)
T PLN02292 336 PCDTVELNFSKNPMLMYSPTSIMFVNIPS-ISKLQWHPFTITSSSKLEPEKLSVMIKSQ--GKWSTKLYHMLSSSDQIDR 412 (702)
T ss_pred CCCEEEEEEEcCCCCCcCCCCeEEEEEcc-CCccceeeeEeeccCCCCCCEEEEEEEcC--CchhHHHHHhCCCCCcccc
Confidence 34445666642 35789999999999983 3556899999999874 568899999976 8899998 4568888
Q ss_pred -EEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCC----CceEEEEEeeCCCCceec
Q 046552 116 -YLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPND----KTNVYLIYANVTFYDILL 190 (191)
Q Consensus 116 -~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~----~~~i~Li~~~r~~~di~~ 190 (191)
++.++|| +|.+..+...++++++||||+||||++++++++++++++ .++++|+|++|+.+|+++
T Consensus 413 ~~V~VeGP-----------YG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~Dl~~ 481 (702)
T PLN02292 413 LAVSVEGP-----------YGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSSDLSM 481 (702)
T ss_pred ceEEEECC-----------ccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHHHhhH
Confidence 4679999 998764444568999999999999999999999875422 268999999999998865
No 62
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.85 E-value=4.9e-21 Score=181.55 Aligned_cols=131 Identities=25% Similarity=0.320 Sum_probs=110.1
Q ss_pred cCCCCCCeEEEEEe--eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCE
Q 046552 39 GCLDPEKFNEFKLI--KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~ 116 (191)
..++++.+ .+++. +....++||||+.|+++ ..+ ..||||+++.+.+.+.++|+||.. |.+|.+|+++++||+
T Consensus 8 ~~~t~~v~-~l~l~~p~~~~~~~pGQFv~l~~~-~~~--~~rp~Si~~~~~~~g~i~~~vk~v--G~~T~~L~~l~~Gd~ 81 (752)
T PRK12778 8 EIFSEKVF-LLEIEAPLIAKSRKPGQFVIVRVG-EKG--ERIPLTIADADPEKGTITLVIQEV--GLSTTKLCELNEGDY 81 (752)
T ss_pred EEEcCCEE-EEEEeCCchhccCCCCeeEEEEeC-CCC--CeeEEEeeeeCCCCCEEEEEEEEc--CchHHHHhcCCCCCE
Confidence 35677765 45553 22357999999999987 223 468999999988889999999988 899999999999999
Q ss_pred E-EEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 L-PLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v-~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+ .|.|| +|++...+. .++++|||||+||||++++++++++++ .+++++|++|+.+|+++
T Consensus 82 v~~v~GP-----------~G~~~~~~~-~~~~llvaGG~GiaPl~~l~~~l~~~~---~~v~l~~g~r~~~~l~~ 141 (752)
T PRK12778 82 ITDVVGP-----------LGNPSEIEN-YGTVVCAGGGVGVAPMLPIVKALKAAG---NRVITILGGRSKELIIL 141 (752)
T ss_pred eCeEeCC-----------CCCCccCCC-CCeEEEEECCEeHHHHHHHHHHHHHCC---CeEEEEeccCCHHHhhh
Confidence 9 79999 999876543 479999999999999999999998765 37999999999999876
No 63
>PLN02631 ferric-chelate reductase
Probab=99.84 E-value=1.3e-20 Score=176.08 Aligned_cols=135 Identities=16% Similarity=0.266 Sum_probs=106.9
Q ss_pred CCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCC-CCCEEEEEEEEeCCCccccccc-cCCC-CC--
Q 046552 42 DPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDS-DIGYFELVIKMYPQGRMSHHVH-ELQE-GD-- 115 (191)
Q Consensus 42 ~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~-~~~~l~l~Vk~~~~G~~S~~L~-~l~~-Gd-- 115 (191)
-+++..++++. .+.+.++||||+++++|. .+..++||||++|.|+ +++.++|+||.. |.+|++|. .++. ||
T Consensus 318 l~~d~l~l~~~~~~~~~~~PGQfvfL~~p~-~s~~q~HPFSIaSsp~~~~~~L~~~IK~~--Gg~T~~L~~~l~~~g~~i 394 (699)
T PLN02631 318 LPSDNLELTFSKTPGLHYTPTSILFLHVPS-ISKLQWHPFTITSSSNLEKDTLSVVIRRQ--GSWTQKLYTHLSSSIDSL 394 (699)
T ss_pred eCCCeEEEEEEcCCCCcCCCCceEEEEecc-CCccceEEEEEeccCCCCCCEEEEEEEcC--ChHHHHHHHhhhcCCCee
Confidence 34555566664 236789999999999994 3567889999999874 457899999975 88999994 4544 45
Q ss_pred EEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCC----CceEEEEEeeCCCCceec
Q 046552 116 YLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPND----KTNVYLIYANVTFYDILL 190 (191)
Q Consensus 116 ~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~----~~~i~Li~~~r~~~di~~ 190 (191)
++.++|| +|.+..+...++++++||||+||||+++++++++++..+ .++++|+|++|+.+|+.+
T Consensus 395 ~V~VeGP-----------YG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~dL~f 462 (699)
T PLN02631 395 EVSTEGP-----------YGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYHDLAF 462 (699)
T ss_pred EEEEECC-----------CCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHHHhhh
Confidence 6889999 997665555678999999999999999999999864311 247999999999999875
No 64
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.84 E-value=9.4e-21 Score=163.59 Aligned_cols=122 Identities=20% Similarity=0.317 Sum_probs=106.1
Q ss_pred eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc-cCCCCCEEEEeCCCCCcccccc
Q 046552 53 KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH-ELQEGDYLPLKGPDPSRRFDSL 131 (191)
Q Consensus 53 ~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~-~l~~Gd~v~i~gP~~~~~~~~~ 131 (191)
+++..+++|||.+++++..++....|||||++++.. ++++|.||.- |++|+-|+ ++++|++++++||
T Consensus 238 ~~~~~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~-sel~FsIK~L--GD~Tk~l~dnLk~G~k~~vdGP--------- 305 (438)
T COG4097 238 QGPWLYQAGQFAFLKIEIEEFRMRPHPFTIACSHEG-SELRFSIKAL--GDFTKTLKDNLKVGTKLEVDGP--------- 305 (438)
T ss_pred CCcccccCCceEEEEeccccccCCCCCeeeeeCCCC-ceEEEEehhh--hhhhHHHHHhccCCceEEEecC---------
Confidence 446669999999999995555667899999999876 4899999998 99999995 5999999999999
Q ss_pred ccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 132 LLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 132 ~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+|.|.++... ++-++||||+||||+.++++.+... ++..+|+|+|+.|+.+|.++
T Consensus 306 --YG~F~~~~g~-~~QVWIAGGIGITPFis~l~~l~~~-~s~~~V~L~Y~~~n~e~~~y 360 (438)
T COG4097 306 --YGKFDFERGL-NTQVWIAGGIGITPFISMLFTLAER-KSDPPVHLFYCSRNWEEALY 360 (438)
T ss_pred --cceeecccCC-cccEEEecCcCcchHHHHHHhhccc-ccCCceEEEEEecCCchhHH
Confidence 9999988765 4589999999999999999998773 35678999999999998765
No 65
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.81 E-value=4.1e-19 Score=166.80 Aligned_cols=134 Identities=22% Similarity=0.257 Sum_probs=104.5
Q ss_pred CCCeEEEEEee-eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCC-CCCEEEEEEEEeCCCccccccc-----cCCCC-
Q 046552 43 PEKFNEFKLIK-RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDS-DIGYFELVIKMYPQGRMSHHVH-----ELQEG- 114 (191)
Q Consensus 43 p~~~~~~~l~~-~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~-~~~~l~l~Vk~~~~G~~S~~L~-----~l~~G- 114 (191)
+++..++++.+ ..+.++||||+++++|. .+..++||||++|.|. +++.+++.||.. |..|+.|. .+++|
T Consensus 323 ~~~~v~l~i~r~~~~~f~PGQfV~L~vp~-~s~~q~HPFSIaS~p~~~~~~l~~~IK~~--gG~T~~L~~~i~~~l~~g~ 399 (722)
T PLN02844 323 PCKAIELVLPKDPGLKYAPTSVIFMKIPS-ISRFQWHPFSITSSSNIDDHTMSVIIKCE--GGWTNSLYNKIQAELDSET 399 (722)
T ss_pred cCCEEEEEEECCCCCCcCCCeeEEEEECC-CCceeEEEEEeecCCCCCCCeEEEEEEeC--CCchHHHHHHHHhhccCCC
Confidence 45555666643 36899999999999984 3667899999999763 457899999986 55666652 23344
Q ss_pred -----CEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCC----CceEEEEEeeCCC
Q 046552 115 -----DYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPND----KTNVYLIYANVTF 185 (191)
Q Consensus 115 -----d~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~----~~~i~Li~~~r~~ 185 (191)
.++.++|| +|.+..+...++++++||||+||||++++++++.++++. ..++.|+|++|+.
T Consensus 400 ~~~~~~~v~VeGP-----------YG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~ 468 (722)
T PLN02844 400 NQMNCIPVAIEGP-----------YGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKS 468 (722)
T ss_pred CcccceEEEEECC-----------ccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCH
Confidence 37999999 998765555678999999999999999999999864321 2579999999999
Q ss_pred Cceec
Q 046552 186 YDILL 190 (191)
Q Consensus 186 ~di~~ 190 (191)
+|+.+
T Consensus 469 ~dL~~ 473 (722)
T PLN02844 469 QDICL 473 (722)
T ss_pred HHhhh
Confidence 99764
No 66
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.79 E-value=7.3e-19 Score=169.98 Aligned_cols=132 Identities=22% Similarity=0.271 Sum_probs=105.5
Q ss_pred cCCCCCCeEEEEEe--eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCE
Q 046552 39 GCLDPEKFNEFKLI--KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~ 116 (191)
..++++.+. +++. +....++||||+.|+.+ ..+ ..||||+++.|.+.+.++|+||.. |.+|.+|+++++||+
T Consensus 657 ~~lt~dv~~-~~l~~p~~~~~~~PGQFv~L~~~-~~g--e~rP~SIas~~~~~g~i~l~Vk~v--G~~T~~L~~lk~Gd~ 730 (944)
T PRK12779 657 VQLAGGIVE-FTVRAPMVARSAQAGQFVRVLPW-EKG--ELIPLTLADWDAEKGTIDLVVQGM--GTSSLEINRMAIGDA 730 (944)
T ss_pred EEecCCEEE-EEEeCCCccccCCCCceEEEEeC-CCC--CEEeEEccCCCCCCCEEEEEEEee--ccHHHHHhcCCCcCE
Confidence 345565543 4442 22357899999999975 223 369999999887778999999988 888999999999999
Q ss_pred EE-EeCCCCCccccccccccceEeCC--CCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 LP-LKGPDPSRRFDSLLLKGRFKYQP--GQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~-i~gP~~~~~~~~~~~~G~~~~~~--~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+. |.|| +|++...+ ...++++|||||+||||+++|++++++.+ .+++++|++|+.+|+++
T Consensus 731 l~~I~GP-----------lG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g---~~V~li~G~Rs~edl~~ 793 (944)
T PRK12779 731 FSGIAGP-----------LGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG---NHVTLISGFRAKEFLFW 793 (944)
T ss_pred EeeeecC-----------CCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC---CCEEEEEEeCCHHHhhh
Confidence 95 9999 99875322 22368999999999999999999988765 47999999999988764
No 67
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.79 E-value=7.1e-19 Score=171.11 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=107.9
Q ss_pred cCCCCCCeEEEEEe--eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccc-ccCCCCC
Q 046552 39 GCLDPEKFNEFKLI--KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHV-HELQEGD 115 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L-~~l~~Gd 115 (191)
..++++.|. +++. +....++|||||.|+++ . + ...||||+++.+.+.+.++|++|.. |..|++| .++++||
T Consensus 8 ~~l~~~~~~-l~l~ap~~a~~~~PGQFV~l~~~-~-~-~errplSIa~~~~~~g~i~l~vk~v--G~~T~~L~~~lk~Gd 81 (1006)
T PRK12775 8 EAFSDTTFL-WEVEAPDVAASAEPGHFVMLRLY-E-G-AERIPLTVADFDRKKGTITMVVQAL--GKTTREMMTKFKAGD 81 (1006)
T ss_pred EEecCCEEE-EEEecCCcccCCCCCeeEEEEeC-C-C-CeeEEEEecCcCCCCCEEEEEEEec--CcHHHHHHhcCCCCC
Confidence 467777764 5553 33467999999999986 2 2 3479999999887779999999987 8999998 6999999
Q ss_pred EE-EEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 116 YL-PLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 116 ~v-~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
++ .+.|| +|.+...+. .++++|||||+||||+++|++.+.+.+ .+++++|++|+.+++++
T Consensus 82 ~l~~v~GP-----------lG~~~~~~~-~~~vllVaGGiGIAPl~s~~r~l~~~g---~~v~li~g~R~~~~l~~ 142 (1006)
T PRK12775 82 TFEDFVGP-----------LGLPQHIDK-AGHVVLVGGGLGVAPVYPQLRAFKEAG---ARTTGIIGFRNKDLVFW 142 (1006)
T ss_pred EEeeeecC-----------CCCCCCCCC-CCeEEEEEEhHHHHHHHHHHHHHHhCC---CcEEEEEeCCChHHccc
Confidence 99 79999 998754333 478999999999999999999988765 36999999999988765
No 68
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.76 E-value=6.5e-19 Score=154.37 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=98.3
Q ss_pred ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCC-CCEEEEEEEEe--------CCCccccccccC-CCCCEEEEeCCCC
Q 046552 55 ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSD-IGYFELVIKMY--------PQGRMSHHVHEL-QEGDYLPLKGPDP 124 (191)
Q Consensus 55 ~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~-~~~l~l~Vk~~--------~~G~~S~~L~~l-~~Gd~v~i~gP~~ 124 (191)
...+++||++.+..+ ...|+|||+|.|.. .+.++|+|+.. +.|.+|.||+++ ++||+|.+.+|.
T Consensus 129 ~~~~~~gq~l~l~~~-----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~~~~G~~S~~L~~~~~~Gd~v~v~~~~- 202 (360)
T cd06199 129 PARLTAEELLDLLRP-----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGRERKGVASTFLADRLKEGDTVPVFVQP- 202 (360)
T ss_pred CCCCCHHHHHHhCcC-----CCCcceeeccCcccCCCeEEEEEEEeeecCCCCccceehhHHHHhcCCCCCEEEEEEec-
Confidence 367889999999744 35699999999965 47899999865 569999999875 699999999750
Q ss_pred CccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCC-Cceec
Q 046552 125 SRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTF-YDILL 190 (191)
Q Consensus 125 ~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~-~di~~ 190 (191)
.|.|.++.+..++++|||+|||||||++++++.+... ...++.|+|++|+. +|.+|
T Consensus 203 ---------~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~D~~y 259 (360)
T cd06199 203 ---------NPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATG-AKGKNWLFFGERHFATDFLY 259 (360)
T ss_pred ---------CCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhcc-CCCcEEEEEcCCCCccchhH
Confidence 4578776665689999999999999999999987554 34689999999997 67765
No 69
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.75 E-value=1.1e-18 Score=161.87 Aligned_cols=120 Identities=22% Similarity=0.237 Sum_probs=99.4
Q ss_pred ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCC-CCEEEEEEEEe--------CCCcccccccc-CCCCCEEEEeCCCC
Q 046552 55 ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSD-IGYFELVIKMY--------PQGRMSHHVHE-LQEGDYLPLKGPDP 124 (191)
Q Consensus 55 ~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~-~~~l~l~Vk~~--------~~G~~S~~L~~-l~~Gd~v~i~gP~~ 124 (191)
+..++|||++.+..+ ...|+|||+|+|.+ .+.++|+|+.. +.|.+|.||.+ +++||+|.+.+|.
T Consensus 366 p~~~~~gq~v~ll~~-----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~- 439 (597)
T TIGR01931 366 PADLDAEQLISLLRP-----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGRARLGGASGFLAERLKEGDTVPVYIEP- 439 (597)
T ss_pred CCCCCHHHHHHhCcc-----cCCceeeeccCcccCCCEEEEEEEEEEecCCCCccccchhHHHHhhCCCCCEEEEEEee-
Confidence 367899999998765 35699999999853 57899999854 56999999976 9999999999860
Q ss_pred CccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCC-CCceec
Q 046552 125 SRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVT-FYDILL 190 (191)
Q Consensus 125 ~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~-~~di~~ 190 (191)
.|.|.++.+..++++|||+|||||||++++++....+ ...+++|+|++|+ .+|++|
T Consensus 440 ---------~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-~~g~~~LffG~R~~~~D~ly 496 (597)
T TIGR01931 440 ---------NDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDG-AKGKNWLFFGNPHFTTDFLY 496 (597)
T ss_pred ---------CCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHcc-CCCCEEEEECCCCCCcchhH
Confidence 4578776665679999999999999999999987654 3468999999999 678765
No 70
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.75 E-value=3.7e-18 Score=150.63 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=91.0
Q ss_pred CeeeeeeecCcCCCC-CCEEEEEEEEe---------CCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCCC
Q 046552 74 EEVIKPYTPATLDSD-IGYFELVIKMY---------PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQ 143 (191)
Q Consensus 74 ~~~~rpyT~~s~~~~-~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~ 143 (191)
....|+|||+|.|.. .+.++|+||.. +.|.+|+||+++++||+|.+.+| .|.|.++.+.
T Consensus 161 ~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p-----------~g~F~lp~~~ 229 (382)
T cd06207 161 LIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIK-----------KSSFKLPKDP 229 (382)
T ss_pred CCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEE-----------CCcccCCCCC
Confidence 356799999999864 58899999976 46999999999999999999999 8988887665
Q ss_pred CceEEEEecCCCHHHHHHHHHHHHh---CCCCCceEEEEEeeCCC-CceecC
Q 046552 144 VEAFGTLTGDTGIAPMFQVARAILE---NPNDKTNVYLIYANVTF-YDILLK 191 (191)
Q Consensus 144 ~~~lvlIagGtGItP~~~il~~l~~---~~~~~~~i~Li~~~r~~-~di~~~ 191 (191)
.++++|||+|||||||++++++... ++....++.|+|++|+. +|.+|+
T Consensus 230 ~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~ 281 (382)
T cd06207 230 KKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYK 281 (382)
T ss_pred CCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHH
Confidence 6899999999999999999998653 22235689999999998 787763
No 71
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.74 E-value=2.1e-18 Score=152.24 Aligned_cols=119 Identities=15% Similarity=0.202 Sum_probs=95.1
Q ss_pred cCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCC-CCEEEEEEEEeC----------CCccccccccCCCCCEEEE--eCC
Q 046552 56 LGLPIGQHISCRGRDDLGEEVIKPYTPATLDSD-IGYFELVIKMYP----------QGRMSHHVHELQEGDYLPL--KGP 122 (191)
Q Consensus 56 ~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~-~~~l~l~Vk~~~----------~G~~S~~L~~l~~Gd~v~i--~gP 122 (191)
...+.||++.+. | ....|+|||+|.|.. .+.+++.|+..+ .|.+|.||+++++||+|.+ ++|
T Consensus 145 ~~~~~~~~l~~~-p----~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p 219 (384)
T cd06206 145 IALPLATFLAML-P----PMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPS 219 (384)
T ss_pred CCCCHHHHHHhC-c----ccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecC
Confidence 356779988886 4 135799999999854 466777766532 6899999999999999985 589
Q ss_pred CCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhC---CCCCceEEEEEeeCCC-Cceec
Q 046552 123 DPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILEN---PNDKTNVYLIYANVTF-YDILL 190 (191)
Q Consensus 123 ~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~---~~~~~~i~Li~~~r~~-~di~~ 190 (191)
.|.|.++.+..++++|||||||||||++++++.... +....+++|+|++|+. +|++|
T Consensus 220 -----------~g~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly 280 (384)
T cd06206 220 -----------HSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLY 280 (384)
T ss_pred -----------CCccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccch
Confidence 888887766668999999999999999999987532 2234589999999999 78776
No 72
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.73 E-value=9.4e-18 Score=120.68 Aligned_cols=89 Identities=40% Similarity=0.711 Sum_probs=74.4
Q ss_pred cCCCCCCeE-EEEEee--eecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCC
Q 046552 39 GCLDPEKFN-EFKLIK--RILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGD 115 (191)
Q Consensus 39 ~~l~p~~~~-~~~l~~--~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd 115 (191)
..++++.+. .|++.+ ..+.+.||||+.++++ .++....|+|||++.|.+++.++|+||.+++|.+|+||+++++||
T Consensus 8 ~~~s~~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~-~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S~~L~~l~~Gd 86 (99)
T PF00970_consen 8 EELSPDVKIFRFKLPDPDQKLDFKPGQFVSVRVP-INGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVSRYLHQLKPGD 86 (99)
T ss_dssp EEESSSEEEEEEEESSTTTT-SSTTT-EEEEEEE-ETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHHHHHHTSCTTS
T ss_pred EEeCCCeEEEEEEECCCCcccccCcceEEEEEEc-cCCcceecceeEeeecCCCCcEEEEEEeccCCHHHHHHHhCCCCC
Confidence 356666543 455542 2578999999999999 567789999999999998899999999999999999999999999
Q ss_pred EEEEeCCCCCccccccccccceEe
Q 046552 116 YLPLKGPDPSRRFDSLLLKGRFKY 139 (191)
Q Consensus 116 ~v~i~gP~~~~~~~~~~~~G~~~~ 139 (191)
+|.++|| +|+|.|
T Consensus 87 ~v~i~gP-----------~G~f~y 99 (99)
T PF00970_consen 87 EVEIRGP-----------YGNFTY 99 (99)
T ss_dssp EEEEEEE-----------ESSEEE
T ss_pred EEEEEEc-----------ccccCC
Confidence 9999999 999875
No 73
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.70 E-value=5.7e-17 Score=151.51 Aligned_cols=163 Identities=18% Similarity=0.226 Sum_probs=124.7
Q ss_pred hhhHHHHHHHHHHHHhheeeeeee----cCCCcCCCCCCeEEEEEee-eecCCCCCcEEEEEeeCCCCCeeeeeeecCcC
Q 046552 11 MMRLIIAVALVAIGAGTAYYFYVT----KKPKGCLDPEKFNEFKLIK-RILGLPIGQHISCRGRDDLGEEVIKPYTPATL 85 (191)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~p~~~~~~~l~~-~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~ 85 (191)
..|++++++++..++.....+.++ +..+..+-|++..++.+.+ +.+.++||||+++++| .-+..++||||++|+
T Consensus 330 ~~w~~~~~p~~ly~~dR~~r~~r~~~~~~i~~~~llp~~vi~L~~~Kp~~f~y~~Gqyifv~~p-~ls~~qwHPFTItSs 408 (646)
T KOG0039|consen 330 TTWMYIAVPVLLYILDRILRFLRSQKNVKIAKVVLLPSDVLELIMSKPPGFKYKPGQYIFVNCP-SLSKLEWHPFTITSA 408 (646)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCceEEEEEEcCCCeEEEEEeCCCCCCCCCCCEEEEECc-cccccccCCceeecC
Confidence 567888888444444332222232 2236677788888899876 5999999999999999 447789999999999
Q ss_pred CCCCCEEEEEEEEeCCCccccccc-cCC------------CCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEec
Q 046552 86 DSDIGYFELVIKMYPQGRMSHHVH-ELQ------------EGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTG 152 (191)
Q Consensus 86 ~~~~~~l~l~Vk~~~~G~~S~~L~-~l~------------~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIag 152 (191)
| +++++.++||.. |.+|+.|. .+. ..-++.|+|| +|....+-..++.++||+|
T Consensus 409 p-~dd~lsvhIk~~--g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGP-----------YG~~s~d~~~~e~~vLV~~ 474 (646)
T KOG0039|consen 409 P-EDDFLSVHIKAL--GDWTEKLRNAFSEVSQPPESDKSYPFPKILIDGP-----------YGAPSQDVFKYEVLVLVGG 474 (646)
T ss_pred C-CCCEEEEEEEec--CcHHHHHHHHHhhhcccccccccccCceEEEECC-----------CCCCchhhhhcceEEEEcc
Confidence 9 558999999988 88888773 222 1336899999 9988877778899999999
Q ss_pred CCCHHHHHHHHHHHHhCCC---------------CCceEEEEEeeCCCCce
Q 046552 153 DTGIAPMFQVARAILENPN---------------DKTNVYLIYANVTFYDI 188 (191)
Q Consensus 153 GtGItP~~~il~~l~~~~~---------------~~~~i~Li~~~r~~~di 188 (191)
|+|+||+.+++++++.+.+ ...++.++|.+|+..+.
T Consensus 475 GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf 525 (646)
T KOG0039|consen 475 GIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSF 525 (646)
T ss_pred CcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccch
Confidence 9999999999999985421 22468899997766554
No 74
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.69 E-value=6.4e-17 Score=143.55 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=88.0
Q ss_pred eeeeeeecCcCCCC-CCEEEEEEEEeCC---CccccccccCC-----CCCEEEEeC-CCCCccccccccccceEeCCC-C
Q 046552 75 EVIKPYTPATLDSD-IGYFELVIKMYPQ---GRMSHHVHELQ-----EGDYLPLKG-PDPSRRFDSLLLKGRFKYQPG-Q 143 (191)
Q Consensus 75 ~~~rpyT~~s~~~~-~~~l~l~Vk~~~~---G~~S~~L~~l~-----~Gd~v~i~g-P~~~~~~~~~~~~G~~~~~~~-~ 143 (191)
...|+|||+|.|.. ++.++|+|+..+. |.+|.||++++ +||+|.+.+ | .|.|.++.+ .
T Consensus 172 ~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~-----------~g~F~lp~~~~ 240 (398)
T cd06203 172 LQPRPYSIASSPLEGPGKLRFIFSVVEFPAKGLCTSWLESLCLSASSHGVKVPFYLRS-----------SSRFRLPPDDL 240 (398)
T ss_pred CCCcceeecCCcccCCCeEEEEEEEEEecCCChhhHHHHHhhhhhcCCCCEEEEEEec-----------CCCcCCCCcCC
Confidence 56799999999865 5899999998764 99999999988 999999998 5 677877655 4
Q ss_pred CceEEEEecCCCHHHHHHHHHHHHhC-----CCCCceEEEEEeeCCC-Cceec
Q 046552 144 VEAFGTLTGDTGIAPMFQVARAILEN-----PNDKTNVYLIYANVTF-YDILL 190 (191)
Q Consensus 144 ~~~lvlIagGtGItP~~~il~~l~~~-----~~~~~~i~Li~~~r~~-~di~~ 190 (191)
.++++|||+|||||||++++++.... .....++.|+|++|+. +|.+|
T Consensus 241 ~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y 293 (398)
T cd06203 241 RRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLF 293 (398)
T ss_pred CCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhH
Confidence 57999999999999999999987641 2234689999999998 68765
No 75
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.68 E-value=6.6e-17 Score=149.96 Aligned_cols=120 Identities=16% Similarity=0.157 Sum_probs=97.2
Q ss_pred ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCC-CCEEEEEEEEe--------CCCccccccc-cCCCCCEEEEeCCCC
Q 046552 55 ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSD-IGYFELVIKMY--------PQGRMSHHVH-ELQEGDYLPLKGPDP 124 (191)
Q Consensus 55 ~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~-~~~l~l~Vk~~--------~~G~~S~~L~-~l~~Gd~v~i~gP~~ 124 (191)
+..+++||++.+..+ ...|+|||+|+|.+ .++++|.|+.. ..|.+|.||. .+++||+|.+.+|
T Consensus 369 ~~~~~~~q~l~ll~~-----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g~~~~G~~S~~L~~~l~~Gd~v~v~~~-- 441 (600)
T PRK10953 369 PAQLDAEQLIGLLRP-----LTPRLYSIASSQAEVENEVHITVGVVRYDIEGRARAGGASSFLADRLEEEGEVRVFIE-- 441 (600)
T ss_pred CCCCCHHHHHHhCCC-----CCCeeeecccCCCCCCCeEEEEEEEEEeecCCCCcCceEhhhhhhcCCCCCEEEEEec--
Confidence 457899999988755 34699999999853 46788876542 3688999996 5999999999997
Q ss_pred Cccccccccc-cceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCC-CCceecC
Q 046552 125 SRRFDSLLLK-GRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVT-FYDILLK 191 (191)
Q Consensus 125 ~~~~~~~~~~-G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~-~~di~~~ 191 (191)
. |.|.++.+...+++|||+|||||||++++++..... ...+++|+|++|+ ..|++|+
T Consensus 442 ---------~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~-~~~~~~LffG~R~~~~D~lY~ 500 (600)
T PRK10953 442 ---------HNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADG-APGKNWLFFGNPHFTEDFLYQ 500 (600)
T ss_pred ---------cCCcccCCCCCCCCEEEEecCcCcHHHHHHHHHHHHcC-CCCCeEEEeeccCCccchhHH
Confidence 5 478777666689999999999999999999987654 3468999999998 6787763
No 76
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.65 E-value=4.1e-16 Score=139.15 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=87.4
Q ss_pred CeeeeeeecCcCCC-CCCEEEEEEEEeCC---------CccccccccCC---------------------CCCEEEEeCC
Q 046552 74 EEVIKPYTPATLDS-DIGYFELVIKMYPQ---------GRMSHHVHELQ---------------------EGDYLPLKGP 122 (191)
Q Consensus 74 ~~~~rpyT~~s~~~-~~~~l~l~Vk~~~~---------G~~S~~L~~l~---------------------~Gd~v~i~gP 122 (191)
....|+|||+|+|. +.+.++|+|+..+. |.+|.||+++. +||+|.+..|
T Consensus 175 ~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~ 254 (416)
T cd06204 175 RLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVR 254 (416)
T ss_pred cCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEe
Confidence 35689999999985 45789999886533 99999998776 8999999999
Q ss_pred CCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhC---CCCCceEEEEEeeCCC-Cceec
Q 046552 123 DPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILEN---PNDKTNVYLIYANVTF-YDILL 190 (191)
Q Consensus 123 ~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~---~~~~~~i~Li~~~r~~-~di~~ 190 (191)
.|.|.++.+..++++|||+|||||||++++++.... +....++.|+|++|+. +|++|
T Consensus 255 -----------~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly 315 (416)
T cd06204 255 -----------RSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCRHPDEDFIY 315 (416)
T ss_pred -----------cCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCCCCCcccch
Confidence 888887766568999999999999999999986432 2224589999999998 68776
No 77
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.64 E-value=5.7e-16 Score=137.84 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=83.4
Q ss_pred eeeeeeecCcCCCC-CCEEEEEEEEe-----------CCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCC
Q 046552 75 EVIKPYTPATLDSD-IGYFELVIKMY-----------PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPG 142 (191)
Q Consensus 75 ~~~rpyT~~s~~~~-~~~l~l~Vk~~-----------~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~ 142 (191)
...|+|||+|.|.. .+.++|.|+.. ..|.+|+||+++++||+|.+.++. .|.|.++.+
T Consensus 175 l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~----------~~~F~lp~~ 244 (406)
T cd06202 175 LQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRS----------APSFHLPED 244 (406)
T ss_pred cCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEee----------CCccCCCCC
Confidence 46799999999863 46677776653 258999999999999999998750 345777666
Q ss_pred CCceEEEEecCCCHHHHHHHHHHHHhC-------CCCCceEEEEEeeCCC-Cceec
Q 046552 143 QVEAFGTLTGDTGIAPMFQVARAILEN-------PNDKTNVYLIYANVTF-YDILL 190 (191)
Q Consensus 143 ~~~~lvlIagGtGItP~~~il~~l~~~-------~~~~~~i~Li~~~r~~-~di~~ 190 (191)
..++++|||+|||||||++++++.... .....++.|+|++|+. +|.+|
T Consensus 245 ~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly 300 (406)
T cd06202 245 PSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIY 300 (406)
T ss_pred CCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccch
Confidence 668999999999999999999985321 2234689999999999 77766
No 78
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.61 E-value=9.7e-16 Score=129.05 Aligned_cols=124 Identities=22% Similarity=0.403 Sum_probs=106.8
Q ss_pred ecCCCCCcEEEEEeeC----------------------------CCCCeeeeeeecCcCCCCCCEEEEEEEEe-------
Q 046552 55 ILGLPIGQHISCRGRD----------------------------DLGEEVIKPYTPATLDSDIGYFELVIKMY------- 99 (191)
Q Consensus 55 ~~~~~pGQ~v~l~~~~----------------------------~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~------- 99 (191)
...|+||-|+.+..|. ...+...|.||.+|.|.+.+.+.|-||..
T Consensus 161 ~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~ 240 (410)
T COG2871 161 EVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNP 240 (410)
T ss_pred ccccCCCceEEEecCCccccccccCCChhHhcchhhhchheeeccccHHHHHHhhhhcChhhcCeEEEEEEeccCCCCCC
Confidence 7789999999998762 01124679999999999999999999875
Q ss_pred --CCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEE
Q 046552 100 --PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVY 177 (191)
Q Consensus 100 --~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~ 177 (191)
|-|.||.|+.+|+|||+|.|.|| +|++....+. .+++||+||.|.+||++=+-+.+.+-.++++++
T Consensus 241 ~~PpG~mSSyi~sLKpGDKvtisGP-----------fGEfFaKdtd-aemvFigGGAGmapmRSHIfDqL~rlhSkRkis 308 (410)
T COG2871 241 DAPPGQMSSYIWSLKPGDKVTISGP-----------FGEFFAKDTD-AEMVFIGGGAGMAPMRSHIFDQLKRLHSKRKIS 308 (410)
T ss_pred CCCccceeeeEEeecCCCeEEEecc-----------chhhhhccCC-CceEEEecCcCcCchHHHHHHHHHhhcccceee
Confidence 33889999999999999999999 9999876665 799999999999999999988887777789999
Q ss_pred EEEeeCCCCceec
Q 046552 178 LIYANVTFYDILL 190 (191)
Q Consensus 178 Li~~~r~~~di~~ 190 (191)
+.|++|+..+.+|
T Consensus 309 ~WYGARS~rE~fY 321 (410)
T COG2871 309 FWYGARSLREMFY 321 (410)
T ss_pred eeeccchHHHhHH
Confidence 9999999887654
No 79
>PRK06214 sulfite reductase; Provisional
Probab=99.59 E-value=4.1e-15 Score=136.06 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=82.4
Q ss_pred eeeeeeecCcCCCC-CCEEEEEEEEe--------CCCccccccc-cCCCCCEEEEeC--CCCCccccccccccceEeCCC
Q 046552 75 EVIKPYTPATLDSD-IGYFELVIKMY--------PQGRMSHHVH-ELQEGDYLPLKG--PDPSRRFDSLLLKGRFKYQPG 142 (191)
Q Consensus 75 ~~~rpyT~~s~~~~-~~~l~l~Vk~~--------~~G~~S~~L~-~l~~Gd~v~i~g--P~~~~~~~~~~~~G~~~~~~~ 142 (191)
...|+|||+|.|.. .+.++|+||.. +.|.+|.||+ .+++||+|.+.+ | .| |.++.+
T Consensus 314 l~pR~YSISSsP~~~~~~i~ltV~~V~~~~~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~-----------~g-F~lp~~ 381 (530)
T PRK06214 314 LQPRLYSISSSPKATPGRVSLTVDAVRYEIGSRLRLGVASTFLGERLAPGTRVRVYVQKA-----------HG-FALPAD 381 (530)
T ss_pred CCcEEEEeccCCcCCCCEEEEEEEEEeeccCCccccchhhHHHHhcCCCCCEEEEEecCC-----------CC-CccCCC
Confidence 46799999999863 57899999864 4599999996 799999998865 4 45 776655
Q ss_pred CCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCC-CCceec
Q 046552 143 QVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVT-FYDILL 190 (191)
Q Consensus 143 ~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~-~~di~~ 190 (191)
...+++|||+|||||||++++++..... ...+++|+|++|+ .+|.+|
T Consensus 382 ~~~PiImIg~GTGIAPfrsfLq~r~~~~-~~g~~~LffG~R~~~~D~ly 429 (530)
T PRK06214 382 PNTPIIMVGPGTGIAPFRAFLHERAATK-APGRNWLFFGHQRSATDFFY 429 (530)
T ss_pred CCCCEEEEcCCeeHHHHHHHHHHHHHhc-CCCCeEEEEEecCChhhhHH
Confidence 5579999999999999999999876433 2357999999965 567665
No 80
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.38 E-value=4.1e-12 Score=122.44 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=88.0
Q ss_pred CcCCCCCCeEEEEEeee--ecCCCCCcEEEEEeeCCC-CCe-eeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCC
Q 046552 38 KGCLDPEKFNEFKLIKR--ILGLPIGQHISCRGRDDL-GEE-VIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQE 113 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~~~--~~~~~pGQ~v~l~~~~~~-g~~-~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~ 113 (191)
...++|+.| .+++... .-.++||||+.++.+... +.. ..+|+|+++.+.+++.++|+++.. |..|+.|+++++
T Consensus 798 ~~~lap~i~-~L~l~aP~iA~~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvV--GkgT~~Ls~l~~ 874 (1028)
T PRK06567 798 INILDDKTF-ELIIHSPLAAKNFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEV--GKSTSLCKTLSE 874 (1028)
T ss_pred EEEecCCEE-EEEEeCcchhhcCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEE--ChHHHHHhcCCC
Confidence 345667665 3555333 236889999999975211 122 457999999988889999999999 999999999999
Q ss_pred CCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCC
Q 046552 114 GDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENP 170 (191)
Q Consensus 114 Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~ 170 (191)
||.+.+.|| +|+....+. .+++++||||+|+|| +++++.+++
T Consensus 875 Gd~v~v~GP-----------LG~pF~i~~-~k~vLLVgGGVGiAp---Lak~Lk~~G 916 (1028)
T PRK06567 875 NEKVVLMGP-----------TGSPLEIPQ-NKKIVIVDFEVGNIG---LLKVLKENN 916 (1028)
T ss_pred CCEEEEEcc-----------cCCCCCCCC-CCeEEEEEccccHHH---HHHHHHHCC
Confidence 999999999 997543333 478999999999997 557766555
No 81
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=99.36 E-value=1e-12 Score=110.25 Aligned_cols=102 Identities=23% Similarity=0.352 Sum_probs=81.3
Q ss_pred ecCCCCCcEEEEEeeCCCCC--eeeeeeecCcCC-CCCCEEEEEEEEeCCCccccccc-cCCCCCEEEEeCCCCCccccc
Q 046552 55 ILGLPIGQHISCRGRDDLGE--EVIKPYTPATLD-SDIGYFELVIKMYPQGRMSHHVH-ELQEGDYLPLKGPDPSRRFDS 130 (191)
Q Consensus 55 ~~~~~pGQ~v~l~~~~~~g~--~~~rpyT~~s~~-~~~~~l~l~Vk~~~~G~~S~~L~-~l~~Gd~v~i~gP~~~~~~~~ 130 (191)
.+...|||||.+... +.|. ...|-|+.+... ..++.+.|.||+..+|.+|+|+| ++++||.|.++.|
T Consensus 178 ~~~~~PGQYvsV~~~-~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A~G~VS~~~H~~~KVGD~v~~S~P-------- 248 (385)
T KOG3378|consen 178 ISHAHPGQYVSVLWE-IPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAGGVVSNFVHDNLKVGDIVGVSPP-------- 248 (385)
T ss_pred eccCCCCceEEEeec-CCccchhHHHHHHHhhhhhhhccceeEEEeehhchhhHHHhhccccccceeeccCC--------
Confidence 677889999999765 3232 233444444332 23467999999999999999995 8999999999999
Q ss_pred cccccceEeCC---CCCceEEEEecCCCHHHHHHHHHHHHh
Q 046552 131 LLLKGRFKYQP---GQVEAFGTLTGDTGIAPMFQVARAILE 168 (191)
Q Consensus 131 ~~~~G~~~~~~---~~~~~lvlIagGtGItP~~~il~~l~~ 168 (191)
-|+|.+.. +..++++++|||+||||+++|++..+.
T Consensus 249 ---AG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~ 286 (385)
T KOG3378|consen 249 ---AGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL 286 (385)
T ss_pred ---CccceeehhhhccCCceEEecCCcCccccHHHHHHHHh
Confidence 99998874 456899999999999999999998653
No 82
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.34 E-value=3.2e-12 Score=118.18 Aligned_cols=105 Identities=19% Similarity=0.210 Sum_probs=84.1
Q ss_pred eeeeeeecCcCCCCC-CEEEEEEEEe--------CCCccccccccCCC-CCEEEEeCCCCCcccccccccc-ceEeCCCC
Q 046552 75 EVIKPYTPATLDSDI-GYFELVIKMY--------PQGRMSHHVHELQE-GDYLPLKGPDPSRRFDSLLLKG-RFKYQPGQ 143 (191)
Q Consensus 75 ~~~rpyT~~s~~~~~-~~l~l~Vk~~--------~~G~~S~~L~~l~~-Gd~v~i~gP~~~~~~~~~~~~G-~~~~~~~~ 143 (191)
...|.|||+|.+... +.++++|... ..|.+|.||.++.+ ||++.|... .+ +|.++.+.
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~~r~GvcS~~L~~~~~~g~~i~v~v~-----------~n~nf~lp~~~ 439 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGRERYGVCSGYLADLLEEGDTIPVFVQ-----------PNKNFRLPEDP 439 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCCcccccchHHHHhhhcCCCeEEEEec-----------cCCccccCCCC
Confidence 467999999998764 5666665543 12779999987776 999988866 44 68877777
Q ss_pred CceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCC-CCceecC
Q 046552 144 VEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVT-FYDILLK 191 (191)
Q Consensus 144 ~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~-~~di~~~ 191 (191)
.++++|||.|||||||++++++-..+. .+.+.+|+|++|+ .+|.+|+
T Consensus 440 ~~PiIMIG~GTGIAPFRafvq~r~~~~-~~gk~wLfFG~R~~~~DfLY~ 487 (587)
T COG0369 440 ETPIIMIGPGTGIAPFRAFVQERAANG-AEGKNWLFFGCRHFTEDFLYQ 487 (587)
T ss_pred CCceEEEcCCCCchhHHHHHHHHHhcc-ccCceEEEecCCCCccchhhH
Confidence 699999999999999999999987765 3558999999999 6777763
No 83
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=99.14 E-value=1.4e-10 Score=103.69 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=80.8
Q ss_pred eeeeeeecCcCCCCCCEEEEEEEEe---------CCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCCCCc
Q 046552 75 EVIKPYTPATLDSDIGYFELVIKMY---------PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVE 145 (191)
Q Consensus 75 ~~~rpyT~~s~~~~~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~ 145 (191)
-..|.|||+|.+... .++++|... ..|-+|+||.+|++||+|.+.-- -|.+.++.....
T Consensus 366 IrPR~fSIas~~~~~-~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~-----------~g~l~~p~~~~~ 433 (574)
T KOG1159|consen 366 IRPRAFSIASSPGAH-HLELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVR-----------PGTLYFPSDLNK 433 (574)
T ss_pred cccceeeeccCCCCC-ceeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEe-----------cCccccCCCCCC
Confidence 356999999999874 488766543 45999999999999999887755 577777777678
Q ss_pred eEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCC-ceec
Q 046552 146 AFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFY-DILL 190 (191)
Q Consensus 146 ~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~-di~~ 190 (191)
+++||+-||||||+++++++-.-+.+ ...-|+|++|+.+ |.+|
T Consensus 434 PlImVGPGTGvAPfRa~i~er~~q~~--~~~~lFfGCR~K~~Df~y 477 (574)
T KOG1159|consen 434 PLIMVGPGTGVAPFRALIQERIYQGD--KENVLFFGCRNKDKDFLY 477 (574)
T ss_pred CeEEEcCCCCcccHHHHHHHHHhhcc--CCceEEEecccCCccccc
Confidence 99999999999999999998764432 3447888999764 5554
No 84
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=99.11 E-value=4.8e-11 Score=110.92 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=81.3
Q ss_pred CCCcEEEEEeeCCCCCeeeeeeecCcCCCC-CCEEEE--EEEEeCC--------CccccccccCCCCCEEEEeCCCCCcc
Q 046552 59 PIGQHISCRGRDDLGEEVIKPYTPATLDSD-IGYFEL--VIKMYPQ--------GRMSHHVHELQEGDYLPLKGPDPSRR 127 (191)
Q Consensus 59 ~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~-~~~l~l--~Vk~~~~--------G~~S~~L~~l~~Gd~v~i~gP~~~~~ 127 (191)
+|+.|+.=.+| ....|+|||+|++.- .+.+.+ +|..++. |.+|.||.++++|+.+..-.|
T Consensus 408 pP~~~ll~~lp----~L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~----- 478 (645)
T KOG1158|consen 408 PPLPHLLELLP----RLQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVP----- 478 (645)
T ss_pred CCHHHHHHhCc----cccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCccee-----
Confidence 45555433344 467899999997643 344444 4433322 789999999999998874334
Q ss_pred ccccccccc--eEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCC----CCceEEEEEeeCCCCce
Q 046552 128 FDSLLLKGR--FKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPN----DKTNVYLIYANVTFYDI 188 (191)
Q Consensus 128 ~~~~~~~G~--~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~----~~~~i~Li~~~r~~~di 188 (191)
.+. |.++++...+++|||-|||||||+++++..+.... -...++|+|++|+.++.
T Consensus 479 ------~~~s~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR~~~~d 539 (645)
T KOG1158|consen 479 ------VGKSMFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCRNSDED 539 (645)
T ss_pred ------ecccceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCCCchHH
Confidence 333 55555667899999999999999999999774421 12238999999998765
No 85
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.03 E-value=1.8e-10 Score=83.36 Aligned_cols=42 Identities=40% Similarity=0.666 Sum_probs=38.1
Q ss_pred EEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 149 TLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 149 lIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
|||||||||||++++++++++ +...+++|+|++|+.+|++++
T Consensus 1 lIagGtGIaP~~s~l~~~~~~-~~~~~v~l~~~~r~~~~~~~~ 42 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER-NDNRKVTLFYGARTPEDLLFR 42 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH-TCTSEEEEEEEESSGGGSTTH
T ss_pred CeecceeHHHHHHHHHHHHHh-CCCCCEEEEEEEcccccccch
Confidence 799999999999999999976 356899999999999998863
No 86
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.89 E-value=2e-10 Score=84.07 Aligned_cols=82 Identities=21% Similarity=0.157 Sum_probs=3.9
Q ss_pred CCcCCCCCCeEEEEEeeee--cCCCCCcEEEEEeeCCCC--CeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccC-
Q 046552 37 PKGCLDPEKFNEFKLIKRI--LGLPIGQHISCRGRDDLG--EEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHEL- 111 (191)
Q Consensus 37 ~~~~l~p~~~~~~~l~~~~--~~~~pGQ~v~l~~~~~~g--~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l- 111 (191)
.+..+.++...++++.... +.++||||++|++|.. + ..++||||+++.+.+ +.++|+||.. |.+|+.|.+.
T Consensus 7 ~~v~~~~~~~v~i~i~~~~~~~~~~pGq~v~l~~p~~-s~~~~q~HPFTIas~~~~-~~i~l~ik~~--g~~T~~L~~~~ 82 (105)
T PF08022_consen 7 ASVELLPDDVVEITIPKPSSPFKWKPGQYVFLSFPSI-SKWFWQWHPFTIASSPED-NSITLIIKAR--GGWTKRLYEHL 82 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCEEEEEEECCCCCCCCCCceEEEEEEcCc-CcCcccccccEeeccCCC-CEEEEEEEeC--CCchHHHHHHH
Confidence 3445555666666664443 8999999999999843 4 348999999998874 7899999987 7788887533
Q ss_pred -------CCCCEEEEeCC
Q 046552 112 -------QEGDYLPLKGP 122 (191)
Q Consensus 112 -------~~Gd~v~i~gP 122 (191)
..+-++.|+||
T Consensus 83 ~~~~~~~~~~~~v~idGP 100 (105)
T PF08022_consen 83 SESPSKQGNRLRVFIDGP 100 (105)
T ss_dssp --------------TTST
T ss_pred hhhcccCCCceEEEEECC
Confidence 23447899999
No 87
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=98.70 E-value=2.9e-07 Score=77.55 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=94.9
Q ss_pred CCCcCCCCCCeEEEEEeee-ec---CCCCC-cEEEEEeeCCCCC-------------------eeeeeeecCcCCCCCCE
Q 046552 36 KPKGCLDPEKFNEFKLIKR-IL---GLPIG-QHISCRGRDDLGE-------------------EVIKPYTPATLDSDIGY 91 (191)
Q Consensus 36 ~~~~~l~p~~~~~~~l~~~-~~---~~~pG-Q~v~l~~~~~~g~-------------------~~~rpyT~~s~~~~~~~ 91 (191)
..+..|+|.- .++.+... .. ....+ |||.|-+|...+. ...|.|||.+.+.+.++
T Consensus 23 ~~~~~lsP~m-~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~d~~~~e 101 (265)
T COG2375 23 TRVTQLSPHM-VRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAVDAAAGE 101 (265)
T ss_pred EEEEecCCCe-EEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeeecccccE
Confidence 3455666654 44555322 22 22444 5999998843222 34899999988877788
Q ss_pred EEEEEEEe-CCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCC
Q 046552 92 FELVIKMY-PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENP 170 (191)
Q Consensus 92 l~l~Vk~~-~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~ 170 (191)
+.+-+-.+ +.|..|.|..+.++||+|.+.|| -|.+.. +...+.++||+.-|++..+..+++++-..
T Consensus 102 ~~vDfVlH~~~gpas~WA~~a~~GD~l~i~GP-----------~g~~~p-~~~~~~~lLigDetAlPAIa~iLE~lp~~- 168 (265)
T COG2375 102 LDVDFVLHGEGGPASRWARTAQPGDTLTIMGP-----------RGSLVP-PEAADWYLLIGDETALPAIARILETLPAD- 168 (265)
T ss_pred EEEEEEEcCCCCcchhhHhhCCCCCEEEEeCC-----------CCCCCC-CCCcceEEEeccccchHHHHHHHHhCCCC-
Confidence 76644344 78999999999999999999999 777543 44568999999999999999999987432
Q ss_pred CCCceEEEEEeeCCCCc
Q 046552 171 NDKTNVYLIYANVTFYD 187 (191)
Q Consensus 171 ~~~~~i~Li~~~r~~~d 187 (191)
.+.+.+....+.+|
T Consensus 169 ---~~~~a~lev~d~ad 182 (265)
T COG2375 169 ---TPAEAFLEVDDAAD 182 (265)
T ss_pred ---CceEEEEEeCChHH
Confidence 23455555555444
No 88
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=98.15 E-value=2.8e-06 Score=63.40 Aligned_cols=65 Identities=23% Similarity=0.345 Sum_probs=41.5
Q ss_pred CCCCcEEEEEeeCCCCC--------------------eeeeeeecCcCCCCCCEEEEEEEEeCC-CccccccccCCCCCE
Q 046552 58 LPIGQHISCRGRDDLGE--------------------EVIKPYTPATLDSDIGYFELVIKMYPQ-GRMSHHVHELQEGDY 116 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~--------------------~~~rpyT~~s~~~~~~~l~l~Vk~~~~-G~~S~~L~~l~~Gd~ 116 (191)
..++|+|.|.+|..... ...|.||+.+.+.+.++++|-+-.+.+ |..++|..+.++||+
T Consensus 28 ~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~~l~iDfv~Hg~~Gpas~WA~~A~pGd~ 107 (117)
T PF08021_consen 28 WGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETGELDIDFVLHGDEGPASRWARSARPGDR 107 (117)
T ss_dssp --TT-EEEEEE--TTS----------------------EEEEEE--EEETT--EEEEEEE--SS--HHHHHHHH--TT-E
T ss_pred CCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCCEEEEEEEECCCCCchHHHHhhCCCCCE
Confidence 35899999998843222 368999999998888899886655655 999999999999999
Q ss_pred EEEeCC
Q 046552 117 LPLKGP 122 (191)
Q Consensus 117 v~i~gP 122 (191)
|.|.||
T Consensus 108 v~v~gP 113 (117)
T PF08021_consen 108 VGVTGP 113 (117)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 999999
No 89
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=56.47 E-value=32 Score=23.14 Aligned_cols=56 Identities=20% Similarity=0.302 Sum_probs=34.6
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCC---CCCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLD---SDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~---~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
..+|..|.++.. .....+.|++.... .+.+ +.....+..+-|-..++||++.+..|
T Consensus 6 V~~Gs~V~l~~~---~~~~~~~~~lv~~~~~~~~~~------~IS~~SPLG~ALlG~~~Gd~v~~~~~ 64 (77)
T PF01272_consen 6 VTIGSTVTLKDL---DDGEEETYTLVGPDEADPDNG------KISIDSPLGKALLGKKVGDEVEVELP 64 (77)
T ss_dssp -STTEEEEEEET---TTTEEEEEEEE-GGG-BSTST------EEETTSHHHHHHTT-BTT-EEEEEET
T ss_pred EEeCCEEEEEEC---CCCCEEEEEEEeEhHhCCcee------EEEecCHHHHHhcCCCCCCEEEEEeC
Confidence 567888888763 22345677766533 2334 22334667777888999999999999
No 90
>PRK00036 primosomal replication protein N; Reviewed
Probab=52.12 E-value=45 Score=24.50 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=23.4
Q ss_pred EEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 92 FELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 92 l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
+.+-|...--|.++..+.++..|..+.+.|-
T Consensus 45 v~~~i~ava~G~~a~~~~~l~~Gs~v~v~GF 75 (107)
T PRK00036 45 VELTISAVALGDLALLLADTPLGTEMQVQGF 75 (107)
T ss_pred EEEEEEEEEEhhHHHHhcccCCCCEEEEEEE
Confidence 4444444444788888889999999999995
No 91
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=49.78 E-value=21 Score=28.97 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=15.2
Q ss_pred eeeeeeecCcCCCC-CCEEEEEEEEe
Q 046552 75 EVIKPYTPATLDSD-IGYFELVIKMY 99 (191)
Q Consensus 75 ~~~rpyT~~s~~~~-~~~l~l~Vk~~ 99 (191)
...|.|||+|++.. .+.++|+|...
T Consensus 177 l~PR~YSIsSS~~~~p~~v~ltv~vv 202 (219)
T PF00667_consen 177 LQPRYYSISSSPLVHPNKVHLTVSVV 202 (219)
T ss_dssp ---EEEEB-S-TTTSTTEEEEEEEE-
T ss_pred CCCcceeecccccCCCCEEEEEEEEE
Confidence 56799999998753 57888888764
No 92
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=49.47 E-value=25 Score=26.20 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=12.3
Q ss_pred CCceEEEEEeeCCCCcee
Q 046552 172 DKTNVYLIYANVTFYDIL 189 (191)
Q Consensus 172 ~~~~i~Li~~~r~~~di~ 189 (191)
..++|+|+|..|+.+++-
T Consensus 33 ~~~~i~lvW~vR~~~~l~ 50 (156)
T PF08030_consen 33 RTRRIKLVWVVRDADELE 50 (156)
T ss_dssp ---EEEEEEEES-TTTTH
T ss_pred cccceEEEEeeCchhhhh
Confidence 357899999999998763
No 93
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=47.92 E-value=78 Score=28.28 Aligned_cols=22 Identities=9% Similarity=-0.072 Sum_probs=15.8
Q ss_pred EEEEeeeecCCCCCcEEEEEee
Q 046552 48 EFKLIKRILGLPIGQHISCRGR 69 (191)
Q Consensus 48 ~~~l~~~~~~~~pGQ~v~l~~~ 69 (191)
+..+......++||+++.++++
T Consensus 299 rv~l~N~~~~L~pGm~v~v~i~ 320 (409)
T PRK09783 299 RLEVDNADEALKPGMNAWLQLN 320 (409)
T ss_pred EEEEeCCCCccCCCCEEEEEEe
Confidence 3344444557999999999887
No 94
>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=47.49 E-value=43 Score=24.42 Aligned_cols=39 Identities=8% Similarity=0.085 Sum_probs=29.6
Q ss_pred ceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCc
Q 046552 145 EAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYD 187 (191)
Q Consensus 145 ~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~d 187 (191)
++++|+|.-|++..+..+++++- ...+++.+....+.+|
T Consensus 2 ~~~ll~gDeTalPAi~~iLe~lp----~~~~~~v~iev~~~~d 40 (119)
T PF04954_consen 2 DRYLLVGDETALPAIARILEALP----ADAPGTVFIEVPDEAD 40 (119)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHS-----TT-EEEEEEEESSGGG
T ss_pred ceEEEEeccccHHHHHHHHHhCC----CCCeEEEEEEECChHh
Confidence 57899999999999999999872 2346666666666655
No 95
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=41.85 E-value=42 Score=23.46 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=21.4
Q ss_pred CEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 90 GYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 90 ~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
+.+.+++=+ +.|.+.+....+++||+|.+.|-
T Consensus 28 ~~i~cv~f~-~~g~~~~~~~~l~~Gd~V~v~G~ 59 (91)
T cd04482 28 GEIDCAAYE-PTKEFRDVVRLLIPGDEVTVYGS 59 (91)
T ss_pred cEEEEEEEC-cccccccccCCCCCCCEEEEEEE
Confidence 456665532 23445555578999999999885
No 96
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=40.33 E-value=70 Score=24.69 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=39.1
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCCCC---CCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLDSD---IGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~---~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
..-|+-|.+... +......|+++..... .+.++. ..++.+-|-..++||++.+.+|
T Consensus 79 V~~Gs~V~~~~~---~~ge~~~~~iVg~~ead~~~~~IS~------~SPig~aLlGk~vGd~v~v~~p 137 (151)
T COG0782 79 VTFGSTVTLENL---DDGEEVTYTIVGPDEADPAKGKISV------DSPLGRALLGKKVGDTVEVNTP 137 (151)
T ss_pred EecCCEEEEEEC---CCCCEEEEEEEcccccccccCceec------cCHHHHHHhCCCCCCEEEEecC
Confidence 446888888755 2245689998876543 222222 2567777888999999999999
No 97
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=38.85 E-value=51 Score=25.25 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=36.1
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
...|..|.+... .++ ....|+++.+...+-... +.....++.+-|-..++||++.+..|
T Consensus 81 V~~Gs~V~l~~~-~~g--~~~~~~lVgp~e~d~~~~---~IS~~SPlG~ALlG~~~Gd~v~v~~p 139 (151)
T TIGR01462 81 VGFGSTVTIKDL-DTG--EEETYTIVGSWEADPKEG---KISIDSPLGKALIGKKVGDVVEVQTP 139 (151)
T ss_pred EeeCCEEEEEEC-CCC--CEEEEEEECchhcCccCC---eecCCCHHHHHHcCCCCCCEEEEEeC
Confidence 446888888744 123 346777765433211111 22233566677888999999999999
No 98
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=37.20 E-value=69 Score=23.96 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=23.2
Q ss_pred cCCCCCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 84 TLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 84 s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
+.|.++|..-|.=-+...|.+=..|.++++||+|.+..+
T Consensus 39 ~~pG~~gn~viaGH~~~~~~~F~~L~~l~~Gd~i~v~~~ 77 (137)
T cd05830 39 AMPGEVGNFAVAGHRTTYGAPFNDLDKLRPGDKIVVETA 77 (137)
T ss_pred CCCCCCCcEEEEecCCCCCcccccHhhCCCCCEEEEEEC
Confidence 344444555443322211223345789999999999988
No 99
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=36.16 E-value=61 Score=24.94 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=36.5
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
...|..|.++.. . ......|+++.+... + .... +.....+..+-|-..++||++.+..|
T Consensus 86 V~~Gs~V~l~~~-~--~~~~~~~~lvg~~e~-d-~~~~-~IS~~SPlG~aLlGk~~Gd~v~~~~p 144 (157)
T PRK00226 86 VKFGSTVTLKDL-D--TDEEETYQIVGSDEA-D-PKQG-KISIESPIARALIGKKVGDTVEVTTP 144 (157)
T ss_pred EecCCEEEEEEC-C--CCCEEEEEEEChhhc-C-ccCC-eeccCChHHHHHhCCCCCCEEEEEcC
Confidence 346888888754 2 234567777744322 1 1110 12233566677888999999999999
No 100
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=35.46 E-value=2.1e+02 Score=23.16 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=14.9
Q ss_pred EEeeeecCCCCCcEEEEEeeC
Q 046552 50 KLIKRILGLPIGQHISCRGRD 70 (191)
Q Consensus 50 ~l~~~~~~~~pGQ~v~l~~~~ 70 (191)
++.+....+.+|+++.+.+..
T Consensus 178 ~~~~~~~~l~~G~~v~v~i~~ 198 (265)
T TIGR00999 178 LIKNENLTLKPGLFVQVRVET 198 (265)
T ss_pred EEeCCCCccCCCCEEEEEEec
Confidence 333334568999999998873
No 101
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=34.65 E-value=1.2e+02 Score=23.55 Aligned_cols=55 Identities=18% Similarity=0.319 Sum_probs=37.8
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCC---CCCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLD---SDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~---~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
+..|..|.+... ++ ....|+++.+. ...+.+++ ..++.+-|-..++||+|.+..|
T Consensus 86 V~~Gs~V~l~d~--~~--~~~~~~iVgp~e~d~~~~~IS~------~SPlG~ALlGk~vGd~v~v~~p 143 (157)
T PRK01885 86 VFFGAWVEIENE--DG--EEKRFRIVGPDEIDGRKGYISI------DSPMARALLKKEVGDEVTVNTP 143 (157)
T ss_pred EEeCCEEEEEEC--CC--CEEEEEEEChHHhCcCCCeEec------cCHHHHHHhCCCCCCEEEEEcC
Confidence 346888888643 34 35678776533 33454544 3667788888999999999999
No 102
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=33.08 E-value=45 Score=29.11 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=24.3
Q ss_pred CEEEEEEEEeCCCccccccccCCCCCEEEEeC
Q 046552 90 GYFELVIKMYPQGRMSHHVHELQEGDYLPLKG 121 (191)
Q Consensus 90 ~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~g 121 (191)
|.+.-.||.- |.-|+||++|++||+|.|--
T Consensus 262 G~VhaYi~vP--g~kTkYLaEL~aGDeV~iVD 291 (376)
T COG1465 262 GAVHAYIRVP--GGKTKYLAELKAGDEVLIVD 291 (376)
T ss_pred cceeEEEEcC--CCceEEhhhhcCCCeEEEEe
Confidence 5677888754 66899999999999987654
No 103
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=32.32 E-value=91 Score=23.59 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=37.1
Q ss_pred CCCcEEEEEeeCCCCCeeeeeeecCcCCC---CCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 59 PIGQHISCRGRDDLGEEVIKPYTPATLDS---DIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 59 ~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~---~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
..|..|.+... .....+.|+++...+ ..+.+++ ..++.+-|-..++||++.+..|
T Consensus 56 ~~Gs~V~~~~~---~~~~~~~~~iVg~~Ead~~~~~ISi------~SPlG~ALlG~~~Gd~v~v~~p 113 (137)
T PRK05753 56 TMNSRVRFRDL---SSGEERVRTLVYPADADDSEGQLSV------LAPVGAALLGLSVGQSIDWPLP 113 (137)
T ss_pred EeCCEEEEEEC---CCCCEEEEEEEChhHcCccCCcCcc------cCHHHHHHcCCCCCCEEEEECC
Confidence 45777777653 224568888876533 2343433 2556667888999999999999
No 104
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=32.29 E-value=1e+02 Score=22.63 Aligned_cols=43 Identities=16% Similarity=0.349 Sum_probs=25.5
Q ss_pred eecCcCCCCCCEEEEEEEEeC-CCccccccccCCCCCEEEEeCC
Q 046552 80 YTPATLDSDIGYFELVIKMYP-QGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 80 yT~~s~~~~~~~l~l~Vk~~~-~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
|.....|.+.|.+-|.=-+.. .|.+=..|.++++||+|.+...
T Consensus 33 ~~~~~~pg~~gn~viaGH~~~~~~~~F~~L~~l~~Gd~v~v~~~ 76 (126)
T cd06166 33 FENTAMPGENGNFAIAGHRSYTYGRIFNRLDEVEKGDEIKVTTK 76 (126)
T ss_pred ECCCCCCCCCceEEEEeCcCCCCCcccCChHHCCCCCEEEEEEC
Confidence 334445555565555432211 2333345789999999999887
No 105
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=29.90 E-value=67 Score=28.41 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=24.9
Q ss_pred CEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 90 GYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 90 ~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
|.++-+++.- |..++||.+|+.||+|.+-..
T Consensus 230 GaVhaYv~~p--gg~T~YLsEL~sG~eVlvVd~ 260 (344)
T PRK02290 230 GAVHAYVRVP--GDKTRYLSELRSGDEVLVVDA 260 (344)
T ss_pred CcceeEEEcC--CCcchhhHhhcCCCEEEEEeC
Confidence 5566677554 778999999999999988776
No 106
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=28.94 E-value=23 Score=28.13 Aligned_cols=14 Identities=43% Similarity=0.537 Sum_probs=12.6
Q ss_pred ceEEEEecCCCHHH
Q 046552 145 EAFGTLTGDTGIAP 158 (191)
Q Consensus 145 ~~lvlIagGtGItP 158 (191)
-.+++..||||+||
T Consensus 68 ~DvvlttGGTG~t~ 81 (169)
T COG0521 68 VDVVLTTGGTGITP 81 (169)
T ss_pred CCEEEEcCCccCCC
Confidence 47899999999998
No 107
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=28.47 E-value=61 Score=21.87 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=23.4
Q ss_pred CEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 90 GYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 90 ~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
+.+++++.....+.+..++.+++.||.|.+.|-
T Consensus 27 ~~iQ~v~~~~~~~~~~~~~~~l~~~s~V~v~G~ 59 (85)
T cd04100 27 GIVQVVVNKEELGEFFEEAEKLRTESVVGVTGT 59 (85)
T ss_pred eeEEEEEECCcChHHHHHHhCCCCCCEEEEEeE
Confidence 567777754433334456788999999999984
No 108
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=28.26 E-value=2.2e+02 Score=25.15 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=15.1
Q ss_pred ccccccccCCCCCEEEEeCC
Q 046552 103 RMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 103 ~~S~~L~~l~~Gd~v~i~gP 122 (191)
....-+..|++||.|-+.|.
T Consensus 345 ~~v~V~~GL~~Gd~VVv~G~ 364 (397)
T PRK15030 345 DKWLVTEGLKAGDRVVISGL 364 (397)
T ss_pred CEEEEeCCCCCCCEEEECCc
Confidence 33344478999999999987
No 109
>PRK11797 D-ribose pyranase; Provisional
Probab=27.99 E-value=65 Score=24.61 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=38.2
Q ss_pred cccccccCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhC
Q 046552 104 MSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILEN 169 (191)
Q Consensus 104 ~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~ 169 (191)
.++.|.++--||++.|.-. +|...+. .+.+..+-|.|+..+.++++.+++.
T Consensus 11 Ll~~La~mGHgD~ivI~Da-------------g~P~~~~--~~~idla~~~g~p~f~~vl~aIL~~ 61 (139)
T PRK11797 11 ISSVIARLGHTDTLVICDA-------------GLPIPNG--VERIDLALTKGVPSFLDVLDVVLSE 61 (139)
T ss_pred HHHHHHHcCCCCeEEEcCC-------------CCCCCCC--CceEEeccCCCCCCHHHHHHHHHHh
Confidence 4556678999999998765 2322222 3566899999999999999998864
No 110
>PF13285 DUF4073: Domain of unknown function (DUF4073)
Probab=27.51 E-value=2.4e+02 Score=21.92 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=29.5
Q ss_pred CCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEE
Q 046552 72 LGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLP 118 (191)
Q Consensus 72 ~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~ 118 (191)
+|...|+.|.+...|.=+|...+.||.. |.|. +.+|.+..
T Consensus 114 ~g~~~W~~y~p~npP~~~G~~~V~VR~K--~~mn-----~~~G~~~~ 153 (158)
T PF13285_consen 114 DGGNNWHTYDPANPPDFSGDQTVYVRHK--GEMN-----LEAGETTT 153 (158)
T ss_pred cCccccEeCCcCCCCCCCCceEEEEEec--cccc-----CCCCceEE
Confidence 4667899999999998778888888776 4444 56666543
No 111
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=25.88 E-value=55 Score=25.75 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=26.4
Q ss_pred EEEEEEEeCCCccccc--cccCCCCC--EEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCH
Q 046552 92 FELVIKMYPQGRMSHH--VHELQEGD--YLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGI 156 (191)
Q Consensus 92 l~l~Vk~~~~G~~S~~--L~~l~~Gd--~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGI 156 (191)
+-+.|+..++-...+| +.++--|| .|.+.|| += . ..+..+-|.|||||
T Consensus 61 ~Cvliq~~p~k~GdryEaiySfyfGdyGhISvqGp-----------y~----t--~eDtyLAVTGGtGi 112 (176)
T PF06351_consen 61 ICVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGP-----------YL----T--YEDTYLAVTGGTGI 112 (176)
T ss_dssp EEEEEEEECCCTEEEEEEEEEEE-GGGEEEEEEEE-----------EE----T--TS-EEEEEEEEEET
T ss_pred EEEEEEeccccCCceEEEEEEEEecccceEEEecc-----------cc----c--ccceeEEEeccCce
Confidence 3345555554322333 23455566 5677777 21 1 23678899999997
No 112
>PLN02343 allene oxide cyclase
Probab=25.84 E-value=1.3e+02 Score=24.72 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=27.3
Q ss_pred EEEEEEEeCCCccccc--cccCCCCC--EEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCH
Q 046552 92 FELVIKMYPQGRMSHH--VHELQEGD--YLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGI 156 (191)
Q Consensus 92 l~l~Vk~~~~G~~S~~--L~~l~~Gd--~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGI 156 (191)
+-++|+..++-..-+| +.+.--|| .|.+.|| +=.+ .+..+-|.||+||
T Consensus 112 ~Cvliq~~pek~gDryEa~ySfyfGDyGHisvqGp-----------ylty------eDt~LaiTGGsGi 163 (229)
T PLN02343 112 LCVLIQHVPEKKGDRYEAIYSFYFGDYGHISVQGP-----------YLTY------EDTYLAITGGSGI 163 (229)
T ss_pred eEEEEEeccccCCceeEEEEEEEecCcceeEEecc-----------cccc------ccceEEeecCcce
Confidence 5566777665222222 23344455 3666666 2211 2568899999997
No 113
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=25.27 E-value=1.5e+02 Score=22.95 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=38.5
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCE-EEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGY-FELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~-l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
...|..|.+... ++ ..+.|++...+..... -.. -+.....++.+-|-..++||+|.+..|
T Consensus 83 V~~Gs~Vtl~~~--~g--~~~~~~IVg~~e~d~~~~~~-~~IS~~SPlG~ALlGk~vGD~v~v~~p 143 (158)
T PRK05892 83 LPGGTEVTLRFP--DG--EVETMHVISVVEETPVGREA-ETLTADSPLGQALAGHQAGDTVTYSTP 143 (158)
T ss_pred EEcCcEEEEEEC--CC--CEEEEEEeCchhcCcccccC-CEEccCCHHHHHHhCCCCCCEEEEEcC
Confidence 446888888743 23 4678988865442100 001 122334667777888999999999999
No 114
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=24.95 E-value=82 Score=25.99 Aligned_cols=15 Identities=47% Similarity=0.820 Sum_probs=7.3
Q ss_pred HHHHHhheeeeeeec
Q 046552 21 VAIGAGTAYYFYVTK 35 (191)
Q Consensus 21 ~~~~~~~~~~~~~~~ 35 (191)
++++.|++|||+..+
T Consensus 170 ~l~gGGa~yYfK~~K 184 (218)
T PF14283_consen 170 ALIGGGAYYYFKFYK 184 (218)
T ss_pred HHhhcceEEEEEEec
Confidence 333445556665443
No 115
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=24.60 E-value=1.8e+02 Score=21.88 Aligned_cols=45 Identities=16% Similarity=0.207 Sum_probs=28.7
Q ss_pred eeeecCcCCCCCCEEEEEEEEeCCC--ccccccccCCCCCEEEEeCC
Q 046552 78 KPYTPATLDSDIGYFELVIKMYPQG--RMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 78 rpyT~~s~~~~~~~l~l~Vk~~~~G--~~S~~L~~l~~Gd~v~i~gP 122 (191)
..|.-...|.+.|.+-|.=.+...| ..=..|+++++||+|.+..+
T Consensus 38 g~~~~~~~pG~~Gn~viaGH~~~~g~~~~F~~L~~l~~GD~I~v~~~ 84 (144)
T cd05829 38 GWYAGGPKPGEKGTAVLAGHVDSRGGPAVFFRLGDLRKGDKVEVTRA 84 (144)
T ss_pred eEeCCCCCCCCCCCEEEEEecCCCCCChhhcchhcCCCCCEEEEEEC
Confidence 3444445566667676665443322 12245789999999999997
No 116
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=24.25 E-value=1.3e+02 Score=26.58 Aligned_cols=81 Identities=12% Similarity=0.136 Sum_probs=48.3
Q ss_pred eeeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCC-----------C--cccccc-----ccCCC
Q 046552 52 IKRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQ-----------G--RMSHHV-----HELQE 113 (191)
Q Consensus 52 ~~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~-----------G--~~S~~L-----~~l~~ 113 (191)
.++..+|++|++|.-... |+-|++++... +.|..+. | .+|.|. -++++
T Consensus 85 ~S~~~~f~~GD~V~~~~G-------Wq~y~i~~~~~-------l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~ 150 (340)
T COG2130 85 ASNHPGFQPGDIVVGVSG-------WQEYAISDGEG-------LRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKA 150 (340)
T ss_pred ecCCCCCCCCCEEEeccc-------ceEEEeechhh-------ceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCC
Confidence 345889999998866543 57888877541 2222211 1 245553 47889
Q ss_pred CCEEEEeCCCCCccccccccccceEeC--CCCCceEEEEecCC
Q 046552 114 GDYLPLKGPDPSRRFDSLLLKGRFKYQ--PGQVEAFGTLTGDT 154 (191)
Q Consensus 114 Gd~v~i~gP~~~~~~~~~~~~G~~~~~--~~~~~~lvlIagGt 154 (191)
|+++.|++--+. .|...-+ .-+.-+++=||||-
T Consensus 151 GetvvVSaAaGa--------VGsvvgQiAKlkG~rVVGiaGg~ 185 (340)
T COG2130 151 GETVVVSAAAGA--------VGSVVGQIAKLKGCRVVGIAGGA 185 (340)
T ss_pred CCEEEEEecccc--------cchHHHHHHHhhCCeEEEecCCH
Confidence 999999865211 3433221 23446788888874
No 117
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=24.18 E-value=2.3e+02 Score=19.28 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=31.0
Q ss_pred ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEEEeC
Q 046552 55 ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKG 121 (191)
Q Consensus 55 ~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~g 121 (191)
.+++..|+++.+... .+....-|+..+.+...|.+.|-- ..+.-..+..||.|.|+-
T Consensus 27 ~l~l~~gd~v~i~g~---~~tv~~v~~~~~~~~~~g~I~l~~-------~~R~n~~v~igd~V~V~~ 83 (87)
T PF02359_consen 27 ELGLFPGDVVLISGK---RKTVAFVFPDRPDDSPPGVIRLSG-------IQRKNAGVSIGDRVTVRP 83 (87)
T ss_dssp CTTT-TTEEEEEETT---TEEEEEEEEECCSTTCTTEEEE-H-------HHHHHCT--TTSEEEEEE
T ss_pred HcCCCCccEEEEeCC---ceEEEEEEECCCCCCCCCEEEECH-------HHHhhCCcCCCCEEEEEE
Confidence 678999999888742 223344444444433346655531 223334567899998863
No 118
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=23.57 E-value=3.4e+02 Score=20.75 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=6.7
Q ss_pred CCCCEEEEeC
Q 046552 112 QEGDYLPLKG 121 (191)
Q Consensus 112 ~~Gd~v~i~g 121 (191)
.+||+|.++.
T Consensus 77 ~pGd~v~i~~ 86 (163)
T TIGR02227 77 LPGDKVEFRD 86 (163)
T ss_pred cCCCEEEEEC
Confidence 3677777765
No 119
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=22.98 E-value=1.9e+02 Score=21.54 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCCCEEEEEEEEe-CCCccccccccCCCCCEEEEeCC
Q 046552 87 SDIGYFELVIKMY-PQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 87 ~~~~~l~l~Vk~~-~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
.+.+.+-|.=-+. ..+.+=..|.++++||.|.+..+
T Consensus 39 g~~gN~vIaGH~~~~~~~~F~~L~~l~~GD~i~v~~~ 75 (136)
T TIGR01076 39 GENTRIVITGHRGLPTATMFTNLDKLKKGDMLYLHVG 75 (136)
T ss_pred CCCCeEEEEecCCCCCCCccCCHHHCCCCCEEEEEEC
Confidence 4445555544321 11333445889999999999988
No 120
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=22.85 E-value=3.1e+02 Score=23.97 Aligned_cols=21 Identities=10% Similarity=-0.140 Sum_probs=15.6
Q ss_pred EEeeeecCCCCCcEEEEEeeC
Q 046552 50 KLIKRILGLPIGQHISCRGRD 70 (191)
Q Consensus 50 ~l~~~~~~~~pGQ~v~l~~~~ 70 (191)
.+......+.||+++.+.++.
T Consensus 278 ~~~n~~~~L~pGm~~~v~i~~ 298 (385)
T PRK09578 278 LFPNPERELLPGAYVRIALDR 298 (385)
T ss_pred EEeCCCCcCCCCCEEEEEEEc
Confidence 333445679999999999873
No 121
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=22.64 E-value=1.7e+02 Score=24.27 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=16.1
Q ss_pred CCceEEEEecCCCHHHHHHHHHHHHhCC
Q 046552 143 QVEAFGTLTGDTGIAPMFQVARAILENP 170 (191)
Q Consensus 143 ~~~~lvlIagGtGItP~~~il~~l~~~~ 170 (191)
..+++++|+||.|.++ +++++.+
T Consensus 76 ~p~~VLiiGgG~G~~~-----~ell~~~ 98 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTA-----RELLKHP 98 (246)
T ss_dssp ST-EEEEEESTTSHHH-----HHHTTST
T ss_pred CcCceEEEcCCChhhh-----hhhhhcC
Confidence 4589999999999876 4555443
No 122
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=22.06 E-value=3.1e+02 Score=19.80 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=10.5
Q ss_pred cCCCCCEEEEeCC
Q 046552 110 ELQEGDYLPLKGP 122 (191)
Q Consensus 110 ~l~~Gd~v~i~gP 122 (191)
.+++||.+.++|-
T Consensus 128 ~l~~Gd~i~~~g~ 140 (176)
T PF13567_consen 128 RLQPGDRIRVRGK 140 (176)
T ss_pred ccCCCCEEEEEEE
Confidence 6899999887763
No 123
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.71 E-value=43 Score=24.95 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=5.5
Q ss_pred CCCCCCeEEEE
Q 046552 40 CLDPEKFNEFK 50 (191)
Q Consensus 40 ~l~p~~~~~~~ 50 (191)
-+.|...+.+-
T Consensus 30 G~~P~~gt~w~ 40 (130)
T PF12273_consen 30 GLQPIYGTRWM 40 (130)
T ss_pred CCCCcCCceec
Confidence 55555544443
No 124
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=21.44 E-value=90 Score=27.74 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=24.9
Q ss_pred CEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 90 GYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 90 ~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
|.++-+++.- |.-|+||.+|+.||+|.+-..
T Consensus 240 GaVHaYv~~p--g~kT~YLSEL~sG~~VlvVd~ 270 (354)
T PF01959_consen 240 GAVHAYVLMP--GGKTRYLSELRSGDEVLVVDA 270 (354)
T ss_pred CcceeEEEcC--CCceeehhhhcCCCEEEEEeC
Confidence 5566666544 678999999999999988777
No 125
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=21.35 E-value=1.9e+02 Score=19.53 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhheeeeeeecCCCcCCCCCCeEEEEE
Q 046552 14 LIIAVALVAIGAGTAYYFYVTKKPKGCLDPEKFNEFKL 51 (191)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~l 51 (191)
.+..++++.+.+++.......+......+|+.|.-.++
T Consensus 9 ill~iG~~vIilGfilMsg~~s~dp~~fn~~Ifs~~rI 46 (69)
T PF11297_consen 9 ILLAIGIAVIILGFILMSGGGSDDPNVFNPDIFSFRRI 46 (69)
T ss_pred HHHHHHHHHHHHHHHheeCCCCCCccccCccccceeeE
Confidence 34556666666777766655555567888988764444
No 126
>PHA02099 hypothetical protein
Probab=21.33 E-value=1.2e+02 Score=20.56 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=34.3
Q ss_pred EEEEEEEEeCCCccccccccCCCCCEEEEeCCCCCcccccccccc-ce-EeCCCCCceEEEEecCCC
Q 046552 91 YFELVIKMYPQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKG-RF-KYQPGQVEAFGTLTGDTG 155 (191)
Q Consensus 91 ~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G-~~-~~~~~~~~~lvlIagGtG 155 (191)
+|.++||....|+..+|+.+|+.-|.| || -| ++ .++..+...++|=|.|--
T Consensus 2 efkiiv~s~~~gpid~yi~~lkn~~rv---~p-----------g~~emhilr~~~g~diifha~gy~ 54 (84)
T PHA02099 2 EFKIIVKSSAKGPVDQYIANLKNAGRV---GP-----------GESEMHILRNFEGVDIVFHAEGYN 54 (84)
T ss_pred ceEEEEecccCCCHHHHHHhhhccCcc---CC-----------CCcEEEEEeecCCccEEEEcCCCC
Confidence 478899988889999999988876665 34 11 11 233444556777776653
No 127
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=21.26 E-value=3.5e+02 Score=23.67 Aligned_cols=19 Identities=11% Similarity=-0.102 Sum_probs=14.3
Q ss_pred EeeeecCCCCCcEEEEEee
Q 046552 51 LIKRILGLPIGQHISCRGR 69 (191)
Q Consensus 51 l~~~~~~~~pGQ~v~l~~~ 69 (191)
+......+.||+++.+.++
T Consensus 276 ~~n~~~~l~pGm~v~v~i~ 294 (385)
T PRK09859 276 FPNPNGDLLPGMYVTALVD 294 (385)
T ss_pred EECCCCeECCCCEEEEEEe
Confidence 3333457999999999887
No 128
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=21.11 E-value=2.9e+02 Score=24.67 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=14.7
Q ss_pred CccccccccCCCCCEEEEeCC
Q 046552 102 GRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 102 G~~S~~L~~l~~Gd~v~i~gP 122 (191)
+.....+..|++||.|-+.|-
T Consensus 359 ~~~v~I~~GL~~Gd~VV~~g~ 379 (415)
T PRK11556 359 SQKVVISAGLSAGDRVVTDGI 379 (415)
T ss_pred CCEEEEECCCCCCCEEEECCc
Confidence 333444578899999888775
No 129
>TIGR01955 RfaH transcriptional activator RfaH. This model represents the transcriptional activator protein, RfaH. This protein is most closely related to the transcriptional termination/antitermination protein NusG (TIGR00922) and contains the KOW motif (pfam00467). This protein appears to be limited to the gamma proteobacteria. In E. coli, this gene appears to control the expression of haemolysin, sex factor and lipopolysaccharide genes.
Probab=21.01 E-value=1.7e+02 Score=22.11 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=13.0
Q ss_pred ccCCCCCEEEE-eCCCCC
Q 046552 109 HELQEGDYLPL-KGPDPS 125 (191)
Q Consensus 109 ~~l~~Gd~v~i-~gP~~~ 125 (191)
..+++||+|.| +||+.+
T Consensus 107 ~~~~~G~~V~V~~GPf~g 124 (159)
T TIGR01955 107 TLPYKGDKVRITDGAFAG 124 (159)
T ss_pred cCCCCCCEEEEeccCCCC
Confidence 34789999987 699654
No 130
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=20.54 E-value=1.5e+02 Score=20.05 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=20.8
Q ss_pred EEEEEEEEeCCCc---cccc--cccCCCCCEEEEeCC
Q 046552 91 YFELVIKMYPQGR---MSHH--VHELQEGDYLPLKGP 122 (191)
Q Consensus 91 ~l~l~Vk~~~~G~---~S~~--L~~l~~Gd~v~i~gP 122 (191)
.-++.++.+.+|. .+.| .-.|+|||+.+|+--
T Consensus 28 ~~syr~~Vq~NGnLLIG~AYT~~m~L~PGdEFeI~Lg 64 (71)
T PF14250_consen 28 KASYRVSVQGNGNLLIGSAYTKQMGLKPGDEFEIKLG 64 (71)
T ss_pred CceEEEEEecCCCEEEcHHHHHHhCCCCCCEEEEEeC
Confidence 3556666666665 2333 357999999998753
No 131
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=20.43 E-value=2.4e+02 Score=21.75 Aligned_cols=55 Identities=15% Similarity=0.264 Sum_probs=36.6
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCCC---CCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLDS---DIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~---~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
...|..|.+... ++ ..+.|+++.+.. ..+.++ ...+..+-|-..++||+|.+..|
T Consensus 84 V~~Gs~V~l~d~--~~--~~~~~~iVgp~ead~~~~~IS------~~SPlG~ALlGk~~GD~v~v~~p 141 (156)
T TIGR01461 84 VFFGAWVELEND--DG--VTHRFRIVGYDEIDGRKNYIS------IDSPLARALLKKEVGDEVVVNTP 141 (156)
T ss_pred EecCeEEEEEEC--CC--CEEEEEEEChHHhCcCCCeEC------CCCHHHHHHcCCCCCCEEEEEcC
Confidence 346888888743 23 456787765432 234333 33666777888899999999999
No 132
>cd00004 Sortase Sortases are cysteine transpeptidases, found in gram-positive bacteria, that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The different classes are called Sortase A or SrtA (subfamily 1), B or SrtB (subfamily 2), C or SrtC (subfamily3), D or SrtD (subfamilies 4 and 5), and E or SrtE. In two different sortase subfamilies, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one s
Probab=20.36 E-value=2.7e+02 Score=20.12 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=24.3
Q ss_pred CCCCCCEEEEEEEEeCC-CccccccccCCCCCEEEEeCCC
Q 046552 85 LDSDIGYFELVIKMYPQ-GRMSHHVHELQEGDYLPLKGPD 123 (191)
Q Consensus 85 ~~~~~~~l~l~Vk~~~~-G~~S~~L~~l~~Gd~v~i~gP~ 123 (191)
.|.+.+..-|.=-+... |.+=..|.+++.||+|.+..+.
T Consensus 38 ~pg~~gn~viaGH~~~~~~~~F~~L~~l~~Gd~v~v~~~~ 77 (128)
T cd00004 38 LPGENGNTVIAGHRGGDSGTVFSDLDNLKKGDKIYLTDGG 77 (128)
T ss_pred cCCCCceEEEEeeeCCCCCcccCCHHHCCCCCEEEEEECC
Confidence 34444666665433322 3333447899999999999983
Done!