Query 046552
Match_columns 191
No_of_seqs 161 out of 1534
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 23:27:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eix_A NADH-cytochrome B5 redu 100.0 9E-29 3.1E-33 202.3 14.3 124 55-190 39-162 (243)
2 1umk_A B5R, NADH-cytochrome B5 100.0 8.8E-28 3E-32 199.9 14.6 145 34-190 4-192 (275)
3 1fdr_A Flavodoxin reductase; f 99.9 2.7E-26 9.3E-31 188.0 12.8 137 39-190 13-151 (248)
4 2cnd_A NADH-dependent nitrate 99.9 6.1E-26 2.1E-30 188.1 14.3 132 55-190 40-183 (270)
5 1ep3_B Dihydroorotate dehydrog 99.9 1.6E-26 5.5E-31 191.7 8.4 136 39-190 14-153 (262)
6 1tvc_A Methane monooxygenase c 99.9 3.6E-26 1.2E-30 187.9 10.3 138 37-190 17-162 (250)
7 2r6h_A NADH:ubiquinone oxidore 99.9 9.9E-26 3.4E-30 188.6 12.2 140 38-190 17-202 (290)
8 4eh1_A Flavohemoprotein; struc 99.9 2.5E-25 8.7E-30 181.5 13.8 135 39-190 12-158 (243)
9 1qfj_A Protein (flavin reducta 99.9 7.2E-26 2.5E-30 183.8 9.1 135 39-190 11-147 (232)
10 1krh_A Benzoate 1,2-dioxygenas 99.9 2.9E-25 1E-29 190.2 12.0 134 39-190 117-255 (338)
11 2pia_A Phthalate dioxygenase r 99.9 7.5E-25 2.6E-29 187.0 14.5 117 56-190 37-155 (321)
12 2bgi_A Ferredoxin-NADP(H) redu 99.9 2.6E-25 8.8E-30 185.4 11.1 138 39-190 25-165 (272)
13 2qdx_A Ferredoxin reductase; o 99.9 2.3E-25 7.9E-30 183.7 10.3 136 40-190 13-151 (257)
14 4fk8_A Ferredoxin--NADP reduct 99.9 1.1E-25 3.8E-30 187.0 8.3 138 38-190 27-167 (271)
15 3vo2_A Putative uncharacterize 99.9 3.5E-25 1.2E-29 188.1 11.2 142 38-190 41-208 (310)
16 3lo8_A Ferredoxin--NADP reduct 99.9 4.6E-25 1.6E-29 187.0 11.8 135 45-190 47-210 (311)
17 1gvh_A Flavohemoprotein; oxido 99.9 8.1E-25 2.8E-29 191.1 13.7 138 38-190 160-304 (396)
18 1cqx_A Flavohemoprotein; globi 99.9 2.4E-24 8.3E-29 188.4 14.5 138 38-190 162-310 (403)
19 3jqq_A Ferredoxin NADP reducta 99.9 8.9E-25 3.1E-29 186.5 9.9 132 47-190 36-225 (316)
20 4g1v_A Flavohemoglobin; three 99.9 3.8E-24 1.3E-28 187.2 13.6 121 57-190 183-317 (399)
21 2rc5_A Ferredoxin-NADP reducta 99.9 3.8E-24 1.3E-28 181.5 9.9 134 46-190 50-213 (314)
22 1fnb_A Ferredoxin-NADP+ reduct 99.9 9.5E-24 3.2E-28 179.2 11.1 135 45-190 56-212 (314)
23 2bmw_A Ferredoxin--NADP reduct 99.9 8.1E-24 2.8E-28 178.6 9.3 142 38-190 29-202 (304)
24 2b5o_A FNR, ferredoxin--NADP r 99.9 2.9E-23 9.9E-28 182.7 11.1 135 45-190 141-300 (402)
25 2gpj_A Siderophore-interacting 99.9 9.7E-22 3.3E-26 162.5 12.2 133 38-189 16-153 (252)
26 1ddg_A Sulfite reductase (NADP 99.8 3.6E-22 1.2E-26 174.4 3.3 119 56-190 144-273 (374)
27 4dql_A Bifunctional P-450/NADP 99.8 5.9E-19 2E-23 155.0 9.5 118 57-190 156-290 (393)
28 1f20_A Nitric-oxide synthase; 99.7 4.7E-18 1.6E-22 151.0 8.5 105 75-190 208-330 (435)
29 1tll_A Nitric-oxide synthase, 99.7 5.5E-18 1.9E-22 158.2 4.4 116 60-190 418-551 (688)
30 2qtl_A MSR;, methionine syntha 99.7 1.9E-17 6.3E-22 150.8 6.6 106 75-191 289-431 (539)
31 2bpo_A CPR, P450R, NADPH-cytoc 99.7 6.5E-18 2.2E-22 157.5 0.5 119 58-191 414-580 (682)
32 3qfs_A CPR, P450R, NADPH--cyto 99.7 8.7E-17 3E-21 143.8 7.6 107 74-191 231-357 (458)
33 3qe2_A CPR, P450R, NADPH--cyto 99.6 1.6E-16 5.4E-21 146.7 8.2 106 75-191 392-517 (618)
34 3lrx_A Putative hydrogenase; a 99.4 1.2E-13 4.1E-18 106.7 4.8 65 111-191 1-66 (158)
35 3a1f_A Cytochrome B-245 heavy 99.3 6.1E-13 2.1E-17 103.2 1.4 62 117-189 1-68 (186)
36 3lyu_A Putative hydrogenase; t 99.2 5.7E-12 1.9E-16 95.6 4.9 59 117-191 3-61 (142)
37 2f23_A Anti-cleavage anti-GREA 48.2 11 0.00039 28.0 2.7 58 58-122 83-143 (156)
38 2pn0_A Prokaryotic transcripti 44.2 33 0.0011 25.0 4.7 59 58-122 57-115 (141)
39 3bmb_A Regulator of nucleoside 37.3 79 0.0027 22.6 5.8 56 58-122 54-112 (136)
40 3lnn_A Membrane fusion protein 29.8 1.1E+02 0.0038 24.8 6.3 74 48-122 260-345 (359)
41 1grj_A GREA protein; transcrip 29.2 26 0.0009 26.0 2.0 59 58-122 86-144 (158)
42 3ne5_B Cation efflux system pr 28.9 82 0.0028 26.7 5.4 22 48-69 297-318 (413)
43 2p4v_A Transcription elongatio 28.2 94 0.0032 22.9 5.0 58 58-122 85-142 (158)
44 3o4f_A Spermidine synthase; am 27.3 79 0.0027 26.0 4.8 23 143-170 83-105 (294)
45 2e6z_A Transcription elongatio 25.6 79 0.0027 19.3 3.5 17 109-125 6-23 (59)
46 4h6b_A Allene oxide cyclase; B 24.9 34 0.0011 26.4 1.9 32 108-156 96-129 (195)
47 3fpp_A Macrolide-specific effl 23.4 74 0.0025 25.7 4.0 23 48-70 248-270 (341)
48 4he6_A Peptidase family U32; u 22.2 84 0.0029 20.5 3.4 14 109-122 28-41 (89)
49 2k50_A Replication factor A re 21.5 1.2E+02 0.004 20.6 4.2 15 108-122 68-82 (115)
50 1t2w_A Sortase; transpeptidase 21.1 1.6E+02 0.0056 20.9 5.1 42 80-122 43-86 (145)
51 1nz9_A Transcription antitermi 20.6 86 0.003 18.8 2.9 16 110-125 4-20 (58)
No 1
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.96 E-value=9e-29 Score=202.27 Aligned_cols=124 Identities=51% Similarity=0.970 Sum_probs=111.1
Q ss_pred ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEEEeCCCCCccccccccc
Q 046552 55 ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLK 134 (191)
Q Consensus 55 ~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~ 134 (191)
.+.++||||+.++++ .++....|+|||+|.+.+.+.++|+||++++|.+|+||+++++||+|.++|| +
T Consensus 39 ~~~~~pGq~v~l~~~-~~g~~~~R~ysi~s~~~~~~~~~l~vk~~~~G~~S~~l~~l~~Gd~v~v~gP-----------~ 106 (243)
T 2eix_A 39 VVGLPIGQHMSVKAT-VDGKEIYRPYTPVSSDDEKGYFDLIIKVYEKGQMSQYIDHLNPGDFLQVRGP-----------K 106 (243)
T ss_dssp CCCCCTTCEEEEEEE-ETTEEEEEEECCCSCTTCCSEEEEEEECCTTCHHHHHHHTCCTTCEEEEEEE-----------E
T ss_pred ccCcCCceEEEEEEe-eCCCEEEeeeeecCCCCCCCEEEEEEEEcCCCCcchHhhcCCCCCEEEEECC-----------e
Confidence 367899999999998 3466789999999998877999999999999999999999999999999999 9
Q ss_pred cceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 135 GRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 135 G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|+|.+..+..++++||||||||||+++|++++++++.+..+++|+|++|+.+|+++
T Consensus 107 G~f~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~r~~~~~~~ 162 (243)
T 2eix_A 107 GQFDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANVNEDDILL 162 (243)
T ss_dssp CSCCCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEEEEGGGCTT
T ss_pred EEEEeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEcCCHHHhhH
Confidence 99887766678999999999999999999999876434578999999999999865
No 2
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.95 E-value=8.8e-28 Score=199.90 Aligned_cols=145 Identities=44% Similarity=0.756 Sum_probs=119.6
Q ss_pred ecCCCcCCCCCCeEEEEEeee-------------------ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEE
Q 046552 34 TKKPKGCLDPEKFNEFKLIKR-------------------ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFEL 94 (191)
Q Consensus 34 ~~~~~~~l~p~~~~~~~l~~~-------------------~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l 94 (191)
++..+..|+|..|..+++.++ .+.++||||+.++++ .++....|+|||++.|.+.+.++|
T Consensus 4 ~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~g~~~~R~ySi~s~~~~~~~~~l 82 (275)
T 1umk_A 4 STPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSAR-IDGNLVVRPYTPISSDDDKGFVDL 82 (275)
T ss_dssp -CCCBSCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBCCCCTTCEEEEEEE-ETTEEEEEEECCSSCTTCCSEEEE
T ss_pred cCCCccccCCCccEEEEEEEEEEcCCCeEEEEEEcCCcccccCCCCCcEEEEEEe-eCCcEEEeccccCCccCCCCeEEE
Confidence 444556667776666666443 357899999999987 346678999999999887799999
Q ss_pred EEEEe---------CCCccccccccCCCCCEEEEeCCCCCccccccccccceEeC--------C--------CCCceEEE
Q 046552 95 VIKMY---------PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQ--------P--------GQVEAFGT 149 (191)
Q Consensus 95 ~Vk~~---------~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~--------~--------~~~~~lvl 149 (191)
+||.+ ++|.+|+||+++++||+|.|+|| +|.+.+. + ...++++|
T Consensus 83 ~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP-----------~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vl 151 (275)
T 1umk_A 83 VIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGP-----------SGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGM 151 (275)
T ss_dssp EEECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEE-----------ECSEEEEETTEEEECSSTTSCCEEEECSEEEE
T ss_pred EEEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcC-----------ccceEecCCccccccccccccccccCCceEEE
Confidence 99998 77999999999999999999999 8877542 2 13579999
Q ss_pred EecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 150 LTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 150 IagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|||||||||++++++++++++++..+++|+|++|+.+|+++
T Consensus 152 iagGtGIaP~~~~l~~l~~~~~~~~~v~l~~~~r~~~d~~~ 192 (275)
T 1umk_A 152 IAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILL 192 (275)
T ss_dssp EEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEESSGGGCTT
T ss_pred EecCccHhHHHHHHHHHHhCCCCCcEEEEEEEcCCHHHhhH
Confidence 99999999999999999876434579999999999999875
No 3
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.94 E-value=2.7e-26 Score=188.03 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=114.4
Q ss_pred cCCCCCCeEEEEEeeeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEE
Q 046552 39 GCLDPEKFNEFKLIKRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLP 118 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~ 118 (191)
..++++. ..+++....+.++||||+.++++ .++....|+|||++.|.+ +.++|+||.+++|.+|+||+++++||+|.
T Consensus 13 ~~~~~~~-~~l~l~~~~~~~~pGq~v~l~~~-~~g~~~~R~ySi~s~~~~-~~l~~~v~~~~~G~~s~~l~~l~~Gd~v~ 89 (248)
T 1fdr_A 13 QNWTDAL-FSLTVHAPVLPFTAGQFTKLGLE-IDGERVQRAYSYVNSPDN-PDLEFYLVTVPDGKLSPRLAALKPGDEVQ 89 (248)
T ss_dssp EECSSSE-EEEEEECCCCCCCTTCEEEEEEC-C---CEEEEEECCSCTTC-SSEEEEEECCTTCSSHHHHHTCCTTCEEE
T ss_pred EEcCCCE-EEEEEeCCCCCcCCCCcEEEEcc-CCCCeeeeeecccCCCCC-CcEEEEEEEeCCCchhhHHHhCCCcCEEE
Confidence 3456654 45777544678999999999998 346678999999999876 78999999999999999999999999999
Q ss_pred Ee-CCCCCccccccccccceEeCCC-CCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 119 LK-GPDPSRRFDSLLLKGRFKYQPG-QVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 119 i~-gP~~~~~~~~~~~~G~~~~~~~-~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
++ || +|.|.++.. ..++++||||||||||++++++++.+.+ +..+++|+|++|+.+|+++
T Consensus 90 v~~gP-----------~G~f~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~ 151 (248)
T 1fdr_A 90 VVSEA-----------AGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLD-RFKNLVLVHAARYAADLSY 151 (248)
T ss_dssp EESSC-----------BCCCSGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCT-TCSEEEEEEEESSGGGCTT
T ss_pred EecCC-----------cceeEcCCCCCCceEEEEEecccHHHHHHHHHHHHhhC-CCCcEEEEEEcCCHHHhhH
Confidence 99 99 999876654 3689999999999999999999986543 3478999999999998865
No 4
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.93 E-value=6.1e-26 Score=188.06 Aligned_cols=132 Identities=36% Similarity=0.675 Sum_probs=106.5
Q ss_pred ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEe---------CCCccccccccCCCCCEEEEeCCCCC
Q 046552 55 ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMY---------PQGRMSHHVHELQEGDYLPLKGPDPS 125 (191)
Q Consensus 55 ~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~i~gP~~~ 125 (191)
.+.++||||+.+.++ .++....|+|||++.+.+.+.++|+||.+ ++|.+|+||+++++||+|.++||++.
T Consensus 40 ~~~~~pGQ~v~l~~~-~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~ 118 (270)
T 2cnd_A 40 VLGLPIGKHIFVCAT-IEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGH 118 (270)
T ss_dssp CCCCCTTCEEEEEEE-ETTEEEEEEECCCSCTTCCSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECS
T ss_pred ccCCCCCCEEEEEee-eCCcEEEEeeccCCCccCCCEEEEEEEEeccCcccccCCCCchhhHHhcCCCCCEEEEECCccc
Confidence 467999999999987 34667899999999988778999999986 46999999999999999999999222
Q ss_pred ccccccccccceEeCC--CCCceEEEEecCCCHHHHHHHHHHHHhCC-CCCceEEEEEeeCCCCceec
Q 046552 126 RRFDSLLLKGRFKYQP--GQVEAFGTLTGDTGIAPMFQVARAILENP-NDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 126 ~~~~~~~~~G~~~~~~--~~~~~lvlIagGtGItP~~~il~~l~~~~-~~~~~i~Li~~~r~~~di~~ 190 (191)
+.|.+ .|.|.++. ...++++||||||||||+++++++++++. ++..+++|+|++|+.+|+++
T Consensus 119 ~~~~~---~g~f~l~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~~~~~v~l~~~~r~~~d~~~ 183 (270)
T 2cnd_A 119 VEYTG---RGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRTEDDILL 183 (270)
T ss_dssp EECCS---SSCEEETTEEECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCCCEEEEEEEESCGGGCTT
T ss_pred ceecc---ccceeccCCcccCCEEEEEeccccHHHHHHHHHHHHhcCCCCCcEEEEEEEcCCHHHcch
Confidence 11111 12355543 24689999999999999999999998762 23578999999999999875
No 5
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.93 E-value=1.6e-26 Score=191.72 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=114.9
Q ss_pred cCCCCCCeEEEEEeee--ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCE
Q 046552 39 GCLDPEKFNEFKLIKR--ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~~--~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~ 116 (191)
..++++. ..+++... ...++||||+.++++ ..+....|+|||++.|.+.+.++|+||.++.|.+|+||+++++||+
T Consensus 14 ~~~t~~~-~~l~l~~~~~~~~~~pGQ~v~l~~~-~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~~S~~l~~l~~Gd~ 91 (262)
T 1ep3_B 14 REVAYNI-FEMVLKGTLVDEMDLPGQFLHLAVP-NGAMLLRRPISISSWDKRAKTCTILYRIGDETTGTYKLSKLESGAK 91 (262)
T ss_dssp EEEETTE-EEEEEESGGGGGCCSTTCEEEECCS-CTTCCSCEEEECCEEETTTTEEEEEEECCCTTSHHHHHHTCCTTCE
T ss_pred EEecCCE-EEEEEEcCcccccCCCCceEEEEcC-CCCceeeEEEEeeeecCCCCEEEEEEEEecCCchHHHHhcCCCCCE
Confidence 3455655 45666322 468999999999987 3345788999999998777899999999888999999999999999
Q ss_pred EEEeCCCCCccccccccccc-eEeCCC-CCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 LPLKGPDPSRRFDSLLLKGR-FKYQPG-QVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~-~~~~~~-~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|.+.|| +|+ |.++.. ..++++||||||||||++++++++.+++ .+++|+|++|+.+|+++
T Consensus 92 v~v~gP-----------~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~---~~v~l~~~~r~~~~~~~ 153 (262)
T 1ep3_B 92 VDVMGP-----------LGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG---CQMTILLGFASENVKIL 153 (262)
T ss_dssp EEEEEE-----------ESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT---CEEEEEEEESSGGGCCC
T ss_pred EEEEcc-----------cCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC---CeEEEEEEcCCHHHhhh
Confidence 999999 998 776654 3689999999999999999999998753 58999999999999875
No 6
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.93 E-value=3.6e-26 Score=187.88 Aligned_cols=138 Identities=24% Similarity=0.406 Sum_probs=117.1
Q ss_pred CCcCCCCCCeEEEEEee---e----ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccc
Q 046552 37 PKGCLDPEKFNEFKLIK---R----ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVH 109 (191)
Q Consensus 37 ~~~~l~p~~~~~~~l~~---~----~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~ 109 (191)
....++++. ..+++.. . .+.++||||+.|+++ +....|+|||++.|.+.+.++|+||.+++|.+|+||+
T Consensus 17 ~~~~~~~~~-~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySi~s~~~~~~~l~i~vk~~~~G~~s~~l~ 92 (250)
T 1tvc_A 17 GLNWVSSNT-VQFLLQKRPDECGNRGVKFEPGQFMDLTIP---GTDVSRSYSPANLPNPEGRLEFLIRVLPEGRFSDYLR 92 (250)
T ss_dssp CCEEEETTE-EEEEECSSTTSSSSSCCSCCSCCEEEECTT---SCSSSEEECCBCCSSSSCCEEEEECCCTTSSSHHHHH
T ss_pred EEEEcCCCe-EEEEEEecCCCCcccccCcCCCcEEEEEeC---CCccccccccCCCCCCCCeEEEEEEECCCCCchHHHH
Confidence 344556665 4566643 2 578999999999986 3457899999999987789999999999999999995
Q ss_pred -cCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCce
Q 046552 110 -ELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDI 188 (191)
Q Consensus 110 -~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di 188 (191)
++++||+|.++|| +|++.+.....++++||||||||||+++|++++.+++ +..+++|+|++|+.+|+
T Consensus 93 ~~l~~Gd~v~v~gP-----------~G~~~~~~~~~~~~vliagGtGiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~ 160 (250)
T 1tvc_A 93 NDARVGQVLSVKGP-----------LGVFGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWT-APNETRIYFGVNTEPEL 160 (250)
T ss_dssp HHSSSSSEEEEEEE-----------ECCCSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHT-CCSCEEEEEECSSSTTC
T ss_pred hcCCCCCEEEEEcC-----------ccccccCccCCceEEEEEeccCHHHHHHHHHHHHhcC-CCceEEEEEEeCCHHHh
Confidence 9999999999999 9999877665689999999999999999999998764 35689999999999998
Q ss_pred ec
Q 046552 189 LL 190 (191)
Q Consensus 189 ~~ 190 (191)
++
T Consensus 161 ~~ 162 (250)
T 1tvc_A 161 FY 162 (250)
T ss_dssp CC
T ss_pred hh
Confidence 75
No 7
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.93 E-value=9.9e-26 Score=188.60 Aligned_cols=140 Identities=18% Similarity=0.259 Sum_probs=115.6
Q ss_pred CcCCCCCCeEEEEEee---eecCCCCCcEEEEEeeCC----------------------------CCCeeeeeeecCcCC
Q 046552 38 KGCLDPEKFNEFKLIK---RILGLPIGQHISCRGRDD----------------------------LGEEVIKPYTPATLD 86 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~~---~~~~~~pGQ~v~l~~~~~----------------------------~g~~~~rpyT~~s~~ 86 (191)
...++++. .++++.. ..+.++|||||.|.++.. .+....|+|||++.|
T Consensus 17 ~~~~t~~~-~~l~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~R~ySi~s~~ 95 (290)
T 2r6h_A 17 NKNVSTFI-KEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEETVRAYSMANYP 95 (290)
T ss_dssp EEESSSSE-EEEEEECSTTCCCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSCEEEEEECCSCT
T ss_pred eeecCCCe-EEEEEEcCCCCccccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCCcceeeeccCCC
Confidence 34566665 4455532 367899999999998731 235678999999999
Q ss_pred CCCCEEEEEEEE---------------eCCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEe
Q 046552 87 SDIGYFELVIKM---------------YPQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLT 151 (191)
Q Consensus 87 ~~~~~l~l~Vk~---------------~~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIa 151 (191)
.+.+.++|+||. +++|.+|+||+++++||+|.|.|| +|.+.+.. ..++++|||
T Consensus 96 ~~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP-----------~G~f~~~~-~~~~~vlia 163 (290)
T 2r6h_A 96 AEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGP-----------YGDFHIQD-TDAEMLYIG 163 (290)
T ss_dssp TCCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEE-----------ECCCCCCS-SSCEEEEEE
T ss_pred CCCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEec-----------ccCCcCCC-CCCeEEEEE
Confidence 888899999997 457999999999999999999999 99988653 458999999
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 152 GDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 152 gGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
||||||||++|+++++++.++..+++|+|++|+.+|++|
T Consensus 164 gGtGitP~~s~l~~~~~~~~~~~~v~l~~~~r~~~d~~~ 202 (290)
T 2r6h_A 164 GGAGMAPLRAQILHLFRTLKTGRKVSYWYGARSKNEIFY 202 (290)
T ss_dssp EGGGHHHHHHHHHHHHHTSCCCSCEEEEEEESSGGGCCS
T ss_pred CccCHHHHHHHHHHHHHhcCCCCcEEEEEEcCCHHHHHH
Confidence 999999999999998876434578999999999999875
No 8
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.93 E-value=2.5e-25 Score=181.53 Aligned_cols=135 Identities=20% Similarity=0.310 Sum_probs=112.5
Q ss_pred cCCCCCCeEEEEEee----eecCCCCCcEEEEEeeCCCCCe--eeeeeecCcCCCCCCEEEEEEEEe-----CCCccccc
Q 046552 39 GCLDPEKFNEFKLIK----RILGLPIGQHISCRGRDDLGEE--VIKPYTPATLDSDIGYFELVIKMY-----PQGRMSHH 107 (191)
Q Consensus 39 ~~l~p~~~~~~~l~~----~~~~~~pGQ~v~l~~~~~~g~~--~~rpyT~~s~~~~~~~l~l~Vk~~-----~~G~~S~~ 107 (191)
..++++.+ .+++.. ....++||||+.++++. .+.. ..|+|||++.|.+ +.++|.||.+ ++|.+|+|
T Consensus 12 ~~~~~~~~-~~~l~~~~~~~~~~~~pGq~v~l~~~~-~~~~~~~~R~ySi~s~~~~-~~~~i~vk~~~~~~~~~G~~S~~ 88 (243)
T 4eh1_A 12 QVESAYVT-SFVLVPADGGAVLDYQPGQYIGIEVTP-EGSDYREIRQYSLSHASNG-REYRISVKREGVGSDNPGLVSHY 88 (243)
T ss_dssp EECSSSEE-EEEEEESSCSCCCCCCTTCEEEEEECC-SSCSSCEEEEEEBCSCCCS-SCEEEEEECTTTTSSSCCHHHHH
T ss_pred EEcCCCeE-EEEEEeCCCCcCCCcCCCCEEEEEEec-CCCccccceeeEeccCCCC-CeEEEEEEEeecCCCCCCeehhH
Confidence 34566654 455532 24789999999999983 3332 6799999998865 7899999999 88999999
Q ss_pred cc-cCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCC
Q 046552 108 VH-ELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFY 186 (191)
Q Consensus 108 L~-~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~ 186 (191)
|+ ++++||+|.++|| +|.+.+. ...++++||||||||||++++++++.+++. .. ++|+|++|+.+
T Consensus 89 l~~~l~~G~~v~v~gP-----------~G~~~~~-~~~~~~vliagGtGitp~~~~l~~l~~~~~-~~-v~l~~~~r~~~ 154 (243)
T 4eh1_A 89 LHNNVKVGDSVKLYAP-----------AGDFFYV-ERERPVVLISAGVGATPMQAILHTLAKQNK-SG-VTYLYACNSAK 154 (243)
T ss_dssp HHHHCCTTCEEEEEEE-----------ECSCCCC-CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC-CS-EEEEEEESSGG
T ss_pred HHhcCCCCCEEEEEcc-----------CcccCcC-CCCCCEEEEEccccHHHHHHHHHHHHHcCC-Ce-EEEEEEeCChh
Confidence 96 7999999999999 9998876 567899999999999999999999988763 23 99999999999
Q ss_pred ceec
Q 046552 187 DILL 190 (191)
Q Consensus 187 di~~ 190 (191)
|+++
T Consensus 155 ~~~~ 158 (243)
T 4eh1_A 155 EHTF 158 (243)
T ss_dssp GCTT
T ss_pred hhhH
Confidence 9875
No 9
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.93 E-value=7.2e-26 Score=183.81 Aligned_cols=135 Identities=10% Similarity=0.194 Sum_probs=109.1
Q ss_pred cCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccc-cccCCCCCE
Q 046552 39 GCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHH-VHELQEGDY 116 (191)
Q Consensus 39 ~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~-L~~l~~Gd~ 116 (191)
..++++.+ .+++. +..+.++||||+.++++. ...|+|||++.|.+++.++|.||.+++|.+|.+ ++++++||+
T Consensus 11 ~~~~~~~~-~l~l~~~~~~~~~pGq~v~l~~~~----~~~R~ySi~s~~~~~~~l~l~i~~~~~G~~s~~~~~~l~~Gd~ 85 (232)
T 1qfj_A 11 EAITDTVY-RVRIVPDAAFSFRAGQYLMVVMDE----RDKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDHQ 85 (232)
T ss_dssp EESSSSCE-EEEEEESSCCCCCTTCEEEEESSS----SCEEEEECCSCTTSTTCEEEEEC------CCHHHHHHHHHHSE
T ss_pred EecCCCEE-EEEEecCCCCCcCCCCEEEEECCC----CceeeeecCCCCCCCCcEEEEEEEccCCchhHHHHHhCCCCCE
Confidence 44566664 45553 346789999999999872 468999999999877899999999988887776 588999999
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|.++|| +|++.+.++..++++||||||||||++++++++++++ +..+++|+|++|+.+|+++
T Consensus 86 v~v~gP-----------~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~ 147 (232)
T 1qfj_A 86 IVVDIP-----------HGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN-PNRDITIYWGGREEQHLYD 147 (232)
T ss_dssp EEEEEE-----------ECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC-TTCCEEEEEEESSGGGCTT
T ss_pred EEEeCC-----------ccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC-CCCcEEEEEeeCCHHHhhh
Confidence 999999 9999877666689999999999999999999998764 3578999999999999875
No 10
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.92 E-value=2.9e-25 Score=190.16 Aligned_cols=134 Identities=21% Similarity=0.352 Sum_probs=113.1
Q ss_pred cCCCCCCeEEEEEe--ee--ecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCcccccc-ccCCC
Q 046552 39 GCLDPEKFNEFKLI--KR--ILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHV-HELQE 113 (191)
Q Consensus 39 ~~l~p~~~~~~~l~--~~--~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L-~~l~~ 113 (191)
..++++.+ .+++. +. .+.++||||+.++++ +....|+||+++.|. .+.++|+||.+++|.+|+|| .++++
T Consensus 117 ~~~~~~~~-~l~l~~~~~~~~~~~~pGQ~v~l~~~---~~~~~R~ySi~s~~~-~~~l~~~vk~~~~G~~S~~L~~~l~~ 191 (338)
T 1krh_A 117 ENLSDSTI-TFDIQLDDGQPDIHFLAGQYVNVTLP---GTTETRSYSFSSQPG-NRLTGFVVRNVPQGKMSEYLSVQAKA 191 (338)
T ss_dssp EESSSSEE-EEEEEECTTCCCCCCCTTCEEEEECT---TSSCEEEEECCSCTT-CSEEEEEEECCTTCHHHHHHHTTCCT
T ss_pred EEcCCCEE-EEEEEeCCCCCCCCcCCCCeEEEEcC---CCCccccccccCCCC-CCeEEEEEEEcCCCCchhhHhhccCC
Confidence 34555543 34442 21 578999999999987 335789999999987 68999999999999999999 58999
Q ss_pred CCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 114 GDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 114 Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
||+|.++|| +|+|.+.+.. ++++||||||||||+++|++++.+++ +..+++|+|++|+.+|+++
T Consensus 192 Gd~v~v~gP-----------~G~f~~~~~~-~~~vliagGtGiaP~~s~l~~l~~~~-~~~~v~l~~~~r~~~d~~~ 255 (338)
T 1krh_A 192 GDKMSFTGP-----------FGSFYLRDVK-RPVLMLAGGTGIAPFLSMLQVLEQKG-SEHPVRLVFGVTQDCDLVA 255 (338)
T ss_dssp TCEEEEEEE-----------ECSCSCCCCS-SCEEEEEEGGGHHHHHHHHHHHHHHC-CSSCEEEEEEESSGGGCCC
T ss_pred CCEEEEECC-----------ccceEeCCCC-ceEEEEEccccHhHHHHHHHHHHHcC-CCCeEEEEEEeCCHHHhhh
Confidence 999999999 9998876654 89999999999999999999998765 3578999999999999875
No 11
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.92 E-value=7.5e-25 Score=186.96 Aligned_cols=117 Identities=19% Similarity=0.298 Sum_probs=105.4
Q ss_pred cCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCc-cccccc-cCCCCCEEEEeCCCCCcccccccc
Q 046552 56 LGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGR-MSHHVH-ELQEGDYLPLKGPDPSRRFDSLLL 133 (191)
Q Consensus 56 ~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~-~S~~L~-~l~~Gd~v~i~gP~~~~~~~~~~~ 133 (191)
..++||||+.|++++ + ..|+||+++.|.+.+.++|.||++++|. +|+||+ ++++||+|.++||
T Consensus 37 ~~~~pGQ~v~l~~~~--g--~~R~ySi~s~~~~~~~l~i~Vk~~~~G~g~S~~L~~~l~~Gd~v~v~gP----------- 101 (321)
T 2pia_A 37 PPFEAGANLTVAVPN--G--SRRTYSLCNDSQERNRYVIAVKRDSNGRGGSISFIDDTSEGDAVEVSLP----------- 101 (321)
T ss_dssp CCCCTTCEEEEECTT--S--CEEEEECCSCTTCCSEEEEEEECCTTSCSHHHHHHHSCCTTCEEEECCC-----------
T ss_pred CCCCCCCEEEEECCC--C--CcEEEEeCCCCCCCCeEEEEEEEecCCcchhHHHHhcCCCCCEEEEeCC-----------
Confidence 479999999999872 3 7899999999988789999999999998 999998 8999999999999
Q ss_pred ccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 134 KGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 134 ~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+|.|.+..+ .++++||||||||||+++|++++.+++. .+++|+|++|+.+|++|
T Consensus 102 ~g~f~l~~~-~~~~vliagG~GItP~~s~l~~l~~~~~--~~v~l~~~~r~~~~~~~ 155 (321)
T 2pia_A 102 RNEFPLDKR-AKSFILVAGGIGITPMLSMARQLRAEGL--RSFRLYYLTRDPEGTAF 155 (321)
T ss_dssp BCCSCCCTT-CSEEEEEEEGGGHHHHHHHHHHHHHHCS--SEEEEEEEESCGGGCTT
T ss_pred ccccccCCC-CCCEEEEEecccHhHHHHHHHHHHHcCC--CcEEEEEEECChhhhHH
Confidence 999887664 5899999999999999999999987652 68999999999999875
No 12
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.92 E-value=2.6e-25 Score=185.39 Aligned_cols=138 Identities=19% Similarity=0.250 Sum_probs=115.3
Q ss_pred cCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEE
Q 046552 39 GCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYL 117 (191)
Q Consensus 39 ~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v 117 (191)
..++++. ..+++. ...+.++||||+.++++..++....|+|||++.|.+ +.++|+||.+++|.+|+||+++++||+|
T Consensus 25 ~~~~~~~-~~l~l~~~~~~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~~l~v~~~~~G~~s~~l~~l~~Gd~v 102 (272)
T 2bgi_A 25 RHWTDTL-FSFRVTRPQTLRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD-EELEFYSIKVPDGPLTSRLQHIKVGEQI 102 (272)
T ss_dssp EEEETTE-EEEEEECCTTCCCCTTCEEEEEEECTTSCEEEEEEECCSCTTC-SEEEEEEECCTTCTTHHHHTTCCTTCEE
T ss_pred EEcCCCE-EEEEEeCCCCCccCCCCEEEEEeccCCCCeeeeeeeeccCCCC-CeEEEEEEEccCCCchhHHHhCCCCCEE
Confidence 3445554 346663 235789999999999984456778999999999876 8999999999999999999999999999
Q ss_pred EEe-CCCCCccccccccccceEeCCCC-CceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 118 PLK-GPDPSRRFDSLLLKGRFKYQPGQ-VEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 118 ~i~-gP~~~~~~~~~~~~G~~~~~~~~-~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
.++ || +|.|.++... .++++||||||||||++++++++...+ +..+++|+|++|+.+|++|
T Consensus 103 ~v~~gP-----------~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~ 165 (272)
T 2bgi_A 103 ILRPKP-----------VGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYE-KFDEVIMMHACRTVAELEY 165 (272)
T ss_dssp EEEEEE-----------ECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGT-SCSEEEEEEEESSSGGGHH
T ss_pred EEeeCC-----------CCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhH
Confidence 999 99 9998776542 589999999999999999999987653 3468999999999999865
No 13
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.92 E-value=2.3e-25 Score=183.74 Aligned_cols=136 Identities=19% Similarity=0.234 Sum_probs=113.8
Q ss_pred CCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEE
Q 046552 40 CLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLP 118 (191)
Q Consensus 40 ~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~ 118 (191)
.++++. ..+++. ...+.++||||+.++++ .++....|+|||++.|.+ +.++|+||.+++|.+|+||+++++||+|.
T Consensus 13 ~~~~~~-~~l~l~~~~~~~~~pGq~v~l~~~-~~g~~~~R~ySi~s~~~~-~~~~~~i~~~~~G~~s~~l~~l~~Gd~v~ 89 (257)
T 2qdx_A 13 HWNDTL-FSFKTTRNPGLRFKTGQFVMIGLE-VDGRPLMRAYSIASPNYE-EHLEFFSIKVPDGPLTSRLQHLKEGDELM 89 (257)
T ss_dssp EEETTE-EEEEEECCTTCCCCTTCEEEEEEE-ETTEEEEEEEECCSCTTS-SEEEEEEECCTTCTTHHHHTTCCTTCEEE
T ss_pred EcCCCe-EEEEEeCCCCCccCCCCEEEEEec-CCCCceeeeeEeecCCCC-CeEEEEEEEeCCCcchhHHHhCCCCCEEE
Confidence 345544 456663 33578999999999998 346678999999999876 89999999999999999999999999999
Q ss_pred Ee-CCCCCccccccccccceEeCCC-CCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 119 LK-GPDPSRRFDSLLLKGRFKYQPG-QVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 119 i~-gP~~~~~~~~~~~~G~~~~~~~-~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+. || +|.+.++.. ..++++||||||||||++++++++...+ ...+++|+|++|+.+|+++
T Consensus 90 v~~gp-----------~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~ 151 (257)
T 2qdx_A 90 VSRKP-----------TGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYE-RYEKVILVHGVRWVSELAY 151 (257)
T ss_dssp ECSCC-----------BCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHH-HCSEEEEEEEESSGGGCTT
T ss_pred EecCC-----------CCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcC-CCCeEEEEEEcCCHHHhHh
Confidence 99 89 998877654 2589999999999999999999887543 2368999999999999865
No 14
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.92 E-value=1.1e-25 Score=186.96 Aligned_cols=138 Identities=14% Similarity=0.142 Sum_probs=115.4
Q ss_pred CcCCCCCCeEEEEEe-eeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCE
Q 046552 38 KGCLDPEKFNEFKLI-KRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDY 116 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~ 116 (191)
...++++. ..+++. ...+.++||||+.++++ .++....|||||++.|.+ +.++|+||+.++|.+|+||+++++||+
T Consensus 27 ~~~~~~~~-~~~~l~~~~~~~~~pGQ~v~l~~~-~~~~~~~r~ySi~s~~~~-~~~~~~v~~~~~G~~s~~l~~l~~Gd~ 103 (271)
T 4fk8_A 27 VHHWTDTL-FSFTCTRDQALRFNNGEFTMVGLE-VDGKPLTRAYSIVSPNYE-EHLEFFSIKVQNGPLTSRLQHLKVGDP 103 (271)
T ss_dssp EEEEETTE-EEEEECCCTTCCCCTTCEEEEEEE-ETTEEEEEEEECCSCTTS-SSEEEEEECCTTCTTHHHHTTCCTTCE
T ss_pred EEEcCCCE-EEEEEEcCCCCCcCCCCEEEEEcc-CCCceeeeeEeccCCCCC-CcEEEEEEEECCCchhhHHhcCCCCCE
Confidence 33455555 346663 33678999999999998 446678999999998865 679999999999999999999999999
Q ss_pred EEEe-CCCCCccccccccccceEeCC-CCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 117 LPLK-GPDPSRRFDSLLLKGRFKYQP-GQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 117 v~i~-gP~~~~~~~~~~~~G~~~~~~-~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
|.++ || +|++.+.+ ...++++||||||||||++++++++.+.+ +..+++|+|++|+.+|+++
T Consensus 104 v~v~~gP-----------~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~-~~~~v~l~~~~r~~~~~~~ 167 (271)
T 4fk8_A 104 VLIGKKP-----------TGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYE-RFDKVVLTHTCRLKGELAY 167 (271)
T ss_dssp EEEESCC-----------BCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHH-HCSEEEEEECCCSHHHHHH
T ss_pred EEEecCC-----------CcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcC-CCCCEEEEEecCCHHHHhH
Confidence 9999 99 99988765 35689999999999999999999987643 3468999999999988765
No 15
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=99.92 E-value=3.5e-25 Score=188.06 Aligned_cols=142 Identities=18% Similarity=0.234 Sum_probs=113.6
Q ss_pred CcCCCCC----CeEEEEEe-eeecCCCCCcEEEEEeeCC--CCCe-eeeeeecCcCCC----CCCEEEEEEEEeC-----
Q 046552 38 KGCLDPE----KFNEFKLI-KRILGLPIGQHISCRGRDD--LGEE-VIKPYTPATLDS----DIGYFELVIKMYP----- 100 (191)
Q Consensus 38 ~~~l~p~----~~~~~~l~-~~~~~~~pGQ~v~l~~~~~--~g~~-~~rpyT~~s~~~----~~~~l~l~Vk~~~----- 100 (191)
...++++ ....+++. ...+.++||||+.|+++.. +|+. ..|+|||+|.|. +.+.++|+||+.+
T Consensus 41 ~~~l~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~ 120 (310)
T 3vo2_A 41 NTRITGDDAPGETWHMVFSTEGEIPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQ 120 (310)
T ss_dssp EEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTT
T ss_pred EEEccCCCCCccEEEEEEeCCCCCcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCC
Confidence 3345554 34556663 3467899999999998732 2332 589999999986 4689999999873
Q ss_pred ----CCccccccccCCCCCEEEEeCCCCCccccccccccceEeCC-CCCceEEEEecCCCHHHHHHHHHHHHhCCCC---
Q 046552 101 ----QGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQP-GQVEAFGTLTGDTGIAPMFQVARAILENPND--- 172 (191)
Q Consensus 101 ----~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~-~~~~~lvlIagGtGItP~~~il~~l~~~~~~--- 172 (191)
+|.+|+||+++++||+|.+.|| +|++...+ +..++++|||||||||||++++++++.+..+
T Consensus 121 ~~~~~G~~S~~L~~l~~Gd~v~v~gP-----------~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~ 189 (310)
T 3vo2_A 121 GEIVKGVCSNFLCDLKPGADVKITGP-----------VGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYK 189 (310)
T ss_dssp SCEEECHHHHHHHTCCTTCEEEEEEE-----------ECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCC
T ss_pred CCcCCcchhhHHhcCCCCCEEEEEec-----------cCCcccCCCCCCCCEEEEeCCcchhHHHHHHHHHHHhhccccc
Confidence 6999999999999999999999 99876543 4568999999999999999999999865422
Q ss_pred -CceEEEEEeeCCCCceec
Q 046552 173 -KTNVYLIYANVTFYDILL 190 (191)
Q Consensus 173 -~~~i~Li~~~r~~~di~~ 190 (191)
..+++|+|++|+.+|++|
T Consensus 190 ~~~~v~L~~g~r~~~d~~~ 208 (310)
T 3vo2_A 190 FSGLAWLFLGVPTSDSLLY 208 (310)
T ss_dssp CCSEEEEEEEESSGGGCCS
T ss_pred CCCcEEEEEEecChhhccc
Confidence 368999999999999876
No 16
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=99.92 E-value=4.6e-25 Score=186.96 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=110.9
Q ss_pred CeEEEEEe-eeecCCCCCcEEEEEeeCCC----CC-eeeeeeecCcCCCC----CCEEEEEEEEe-------------CC
Q 046552 45 KFNEFKLI-KRILGLPIGQHISCRGRDDL----GE-EVIKPYTPATLDSD----IGYFELVIKMY-------------PQ 101 (191)
Q Consensus 45 ~~~~~~l~-~~~~~~~pGQ~v~l~~~~~~----g~-~~~rpyT~~s~~~~----~~~l~l~Vk~~-------------~~ 101 (191)
....+++. ...+.++||||+.|+++..+ |. ...|+|||+|.|.+ .+.++|+||+. ++
T Consensus 47 ~v~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~ 126 (311)
T 3lo8_A 47 ETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKN 126 (311)
T ss_dssp CEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCCCGGGS
T ss_pred ccEEEEEeCCCCCcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcCCcCCC
Confidence 33456663 23689999999999988321 22 37899999999864 47999999986 67
Q ss_pred CccccccccCCCCCEEEEeCCCCCccccccccccceEeCC--CCCceEEEEecCCCHHHHHHHHHHHHhCCCC----Cce
Q 046552 102 GRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQP--GQVEAFGTLTGDTGIAPMFQVARAILENPND----KTN 175 (191)
Q Consensus 102 G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~--~~~~~lvlIagGtGItP~~~il~~l~~~~~~----~~~ 175 (191)
|.+|+||+++++||+|.+.|| +|.+...+ ...++++|||||||||||++++++++.++.+ ..+
T Consensus 127 G~~S~~L~~l~~Gd~v~v~gP-----------~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~ 195 (311)
T 3lo8_A 127 GVCSNFLCNSKPGDKIQLTGP-----------SGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGL 195 (311)
T ss_dssp CHHHHHHHTCCTTCEEEEEEE-----------ECCTTCCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSE
T ss_pred CchhhHHhcCCCcCEEEEEec-----------cCCcccCCCcCCCCCEEEEECCEEHHHHHHHHHHHHHhccccccCCCC
Confidence 999999999999999999999 99887655 3568999999999999999999999865421 258
Q ss_pred EEEEEeeCCCCceec
Q 046552 176 VYLIYANVTFYDILL 190 (191)
Q Consensus 176 i~Li~~~r~~~di~~ 190 (191)
++|+|++|+.+|++|
T Consensus 196 v~l~~g~r~~~d~~~ 210 (311)
T 3lo8_A 196 AWLFLGVANSDSLLY 210 (311)
T ss_dssp EEEEEEESSGGGCSS
T ss_pred EEEEEecCChHHhhH
Confidence 999999999999876
No 17
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.92 E-value=8.1e-25 Score=191.06 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=115.1
Q ss_pred CcCCCCCCeEEEEEeee----ecCCCCCcEEEEEeeCCCCC--eeeeeeecCcCCCCCCEEEEEEEEeCCCcccccccc-
Q 046552 38 KGCLDPEKFNEFKLIKR----ILGLPIGQHISCRGRDDLGE--EVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHE- 110 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~~~----~~~~~pGQ~v~l~~~~~~g~--~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~- 110 (191)
+..++++.+ .|++... ...++||||+.++++ .++. ..+|+|||++.|. .+.++|+||+.++|.+|+||++
T Consensus 160 ~~~~s~~i~-~~~l~~~~~~~~~~~~pGQ~v~l~~~-~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~~G~~S~~L~~~ 236 (396)
T 1gvh_A 160 KTPRSALIT-SFELEPVDGGAVAEYRPGQYLGVWLK-PEGFPHQEIRQYSLTRKPD-GKGYRIAVKREEGGQVSNWLHNH 236 (396)
T ss_dssp EEECSSSEE-EEEEEETTCCCCCCCCTTCEEEEEEC-CTTCSSCEEEEEECCSCCC-SSCEEEEEECCTTCHHHHHHHHT
T ss_pred EEEcCCCeE-EEEEEeCCCCcCCCCCCCCeEEEEec-CCCCccceeecceeccCCC-CCeEEEEEEEcCCCcchHHHHhc
Confidence 444555554 4555321 368999999999998 4442 5799999999987 4789999999988999999986
Q ss_pred CCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 111 LQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 111 l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+++||+|.++|| +|.|.++.+..++++|||||||||||++|++++.+++ +.++++|+|++|+.+|+++
T Consensus 237 l~~Gd~v~v~gP-----------~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~-~~~~v~l~~~~r~~~~~~~ 304 (396)
T 1gvh_A 237 ANVGDVVKLVAP-----------AGDFFMAVADDTPVTLISAGVGQTPMLAMLDTLAKAG-HTAQVNWFHAAENGDVHAF 304 (396)
T ss_dssp CCTTCEEEEEEE-----------ECSCCCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHT-CCSCEEEEEEESCTTTCCS
T ss_pred CCCCCEEEEEcC-----------CcceECCCCCCCCEEEEecchhHhHHHHHHHHHHhcC-CCCcEEEEEEeCCHHHhhh
Confidence 999999999999 9998876556689999999999999999999998764 3578999999999999875
No 18
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.92 E-value=2.4e-24 Score=188.44 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=112.6
Q ss_pred CcCCCCCCeEEEEEee----eecCCCCCcEEEEEeeCCCCC-eeeeeeecCcCCCCCCEEEEEEEEeC-----CCccccc
Q 046552 38 KGCLDPEKFNEFKLIK----RILGLPIGQHISCRGRDDLGE-EVIKPYTPATLDSDIGYFELVIKMYP-----QGRMSHH 107 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~~----~~~~~~pGQ~v~l~~~~~~g~-~~~rpyT~~s~~~~~~~l~l~Vk~~~-----~G~~S~~ 107 (191)
+..++++.+ .|++.. ....++|||||.++++..... ...|+|||++.|. .+.++|.||+.+ +|.+|+|
T Consensus 162 ~~~~s~~i~-~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~~~~~~~G~~S~~ 239 (403)
T 1cqx_A 162 KRPESDVIT-SFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN-GRTYRISVKREGGGPQPPGYVSNL 239 (403)
T ss_dssp EEECSSSEE-EEEEEETTCCCCCCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC-SSCEEEEEECCCBTTBCCCHHHHH
T ss_pred EEEcCCCeE-EEEEEeCCCCcCCCCCCCCEEEEEEecCCCCcceeecceecCCCC-CCeEEEEEEECCCCCCCCCeehHH
Confidence 344555553 455532 135899999999999832222 5789999999886 478999999986 6999999
Q ss_pred cc-cCCCCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCC
Q 046552 108 VH-ELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFY 186 (191)
Q Consensus 108 L~-~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~ 186 (191)
|+ ++++||+|.++|| +|.|.++.+..++++|||||||||||++|++++.+ + +.++++++|++|+.+
T Consensus 240 L~~~l~~Gd~v~v~gP-----------~G~f~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~-~~~~v~l~~~~r~~~ 306 (403)
T 1cqx_A 240 LHDHVNVGDQVKLAAP-----------YGSFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-A-PPRQVVFVHGARNSA 306 (403)
T ss_dssp HHHHCCTTCEEEECCC-----------BCSCSCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-S-SCCCEEEEEEESCSS
T ss_pred HhhCCCCCCEEEEecC-----------ccCcccCCCCCCCEEEEEecccHhhHHHHHHHHHh-C-CCCcEEEEEEeCChh
Confidence 98 6999999999999 99888765566899999999999999999999986 2 357899999999999
Q ss_pred ceec
Q 046552 187 DILL 190 (191)
Q Consensus 187 di~~ 190 (191)
|+++
T Consensus 307 ~~~~ 310 (403)
T 1cqx_A 307 VHAM 310 (403)
T ss_dssp SCHH
T ss_pred hCcH
Confidence 9765
No 19
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=99.91 E-value=8.9e-25 Score=186.49 Aligned_cols=132 Identities=15% Similarity=0.215 Sum_probs=110.2
Q ss_pred EEEEEe-eeecCCCCCcEEEEEeeCC---------------------------------CCCeeeeeeecCcCCCCCCEE
Q 046552 47 NEFKLI-KRILGLPIGQHISCRGRDD---------------------------------LGEEVIKPYTPATLDSDIGYF 92 (191)
Q Consensus 47 ~~~~l~-~~~~~~~pGQ~v~l~~~~~---------------------------------~g~~~~rpyT~~s~~~~~~~l 92 (191)
..+.+. ...+.|.+||++.+..|.. +|+..+|+|||+|.|.+ +.+
T Consensus 36 ~~~~~~~~~~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~g~~~~R~ySIaS~p~~-~~l 114 (316)
T 3jqq_A 36 YHLEINHNGLFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSSNNM-ENL 114 (316)
T ss_dssp EEEEEECTTCCCCCTTCEEEECTTCC-----------------------------------CCCCEEEEBCSCTTS-SSE
T ss_pred EEEEEeCCCCcceecCcEeEEECCCcccccccccccccccccccccccccccccccccCCCcccceeeecccCCCC-CeE
Confidence 344442 4479999999999987632 24568999999999876 689
Q ss_pred EEEEEEe------------CCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCC---CCceEEEEecCCCHH
Q 046552 93 ELVIKMY------------PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPG---QVEAFGTLTGDTGIA 157 (191)
Q Consensus 93 ~l~Vk~~------------~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~---~~~~lvlIagGtGIt 157 (191)
+|+||+. ++|.+|+||+++++||+|.|+|| +|.|.++.. ..++++|||||||||
T Consensus 115 ~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP-----------~G~f~l~~~~~~~~~~vvlIAgGtGIa 183 (316)
T 3jqq_A 115 SVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGA-----------HGYFNLPNDAIQKNTNFIFIATGTGIS 183 (316)
T ss_dssp EEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEE-----------ECCCCCCTTHHHHTCCEEEEEEGGGGH
T ss_pred EEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEec-----------CCceEcCCcccCCCCcEEEEeCCceec
Confidence 9999974 66999999999999999999999 999887765 268999999999999
Q ss_pred HHHHHHHHHHhCCC---------CCceEEEEEeeCCCCceec
Q 046552 158 PMFQVARAILENPN---------DKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 158 P~~~il~~l~~~~~---------~~~~i~Li~~~r~~~di~~ 190 (191)
||++|+++++++.. ...+++|+|++|+.+|++|
T Consensus 184 P~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~ 225 (316)
T 3jqq_A 184 PYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILY 225 (316)
T ss_dssp HHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTT
T ss_pred hHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhc
Confidence 99999999986541 2468999999999999876
No 20
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.91 E-value=3.8e-24 Score=187.23 Aligned_cols=121 Identities=17% Similarity=0.307 Sum_probs=105.4
Q ss_pred CCCCCcEEEEEeeCC--C-CCeeeeeeecCcCCCCCCEEEEEEEEe------CCCccccccc-cCCCCCEEEEeCCCCCc
Q 046552 57 GLPIGQHISCRGRDD--L-GEEVIKPYTPATLDSDIGYFELVIKMY------PQGRMSHHVH-ELQEGDYLPLKGPDPSR 126 (191)
Q Consensus 57 ~~~pGQ~v~l~~~~~--~-g~~~~rpyT~~s~~~~~~~l~l~Vk~~------~~G~~S~~L~-~l~~Gd~v~i~gP~~~~ 126 (191)
.++||||+.++++.+ + +...+|+|||++.|.+ +.++|+||++ ++|.+|+||+ ++++||+|.+.||
T Consensus 183 ~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~~-~~~~i~Vk~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~gP---- 257 (399)
T 4g1v_A 183 PITPGQYITVNTHPIRQENQYDALRHYSLCSASTK-NGLRFAVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAP---- 257 (399)
T ss_dssp CCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCCT-TCEEEEEECCCCBTTBCCCHHHHHHHHTCCTTCEEEEEEE----
T ss_pred CCCCCCEEEEEEeCCCCCCccceeeeecccCCCCC-CeEEEEEEeccCCCCCCCCEehhHHHhCCCCCCEEEEEec----
Confidence 899999999998622 2 2357899999999875 7899999994 6799999996 8999999999999
Q ss_pred cccccccccceEeCCC----CCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceec
Q 046552 127 RFDSLLLKGRFKYQPG----QVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 127 ~~~~~~~~G~~~~~~~----~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~ 190 (191)
+|.|.++.. ..++++|||||||||||++|++++++++ ...+++++|++|+.+|+++
T Consensus 258 -------~G~f~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~l~~~~-~~~~v~l~~~~r~~~~~~~ 317 (399)
T 4g1v_A 258 -------AGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCN-PNRPIYWIQSSYDEKTQAF 317 (399)
T ss_dssp -------ECSCCCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHHHHHHC-TTSCEEEEEEESSSTTSTT
T ss_pred -------ccceeeCcccccCCCCCEEEEecceeHhHHHHHHHHHHHcC-CCCCEEEEEecCCHHHhhh
Confidence 999888765 5789999999999999999999998765 3578999999999998765
No 21
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=99.90 E-value=3.8e-24 Score=181.53 Aligned_cols=134 Identities=22% Similarity=0.282 Sum_probs=108.3
Q ss_pred eEEEEEe--eeecCCCCCcEEEEEeeCCC--CC--------eeeeeeecCcCCC----CCCEEEEEEEEe----------
Q 046552 46 FNEFKLI--KRILGLPIGQHISCRGRDDL--GE--------EVIKPYTPATLDS----DIGYFELVIKMY---------- 99 (191)
Q Consensus 46 ~~~~~l~--~~~~~~~pGQ~v~l~~~~~~--g~--------~~~rpyT~~s~~~----~~~~l~l~Vk~~---------- 99 (191)
...+++. ...+.++||||+.|.++... +. ...|+|||++.|. +.+.++|+||..
T Consensus 50 ~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~ 129 (314)
T 2rc5_A 50 VHRIVLAIDHSAYPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQ 129 (314)
T ss_dssp EEEEEEECCTTTCCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCS
T ss_pred EEEEEEeCCCCcCcccCCCEEEEECCCCccccCccchhhcCCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcC
Confidence 4556663 22478999999999987321 21 3679999999885 468999999986
Q ss_pred CCCccccccccCCCCCEEEEeCCCCCccccccccccceEeCCC--CCceEEEEecCCCHHHHHHHHHHHHhCCC--CCce
Q 046552 100 PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKYQPG--QVEAFGTLTGDTGIAPMFQVARAILENPN--DKTN 175 (191)
Q Consensus 100 ~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~--~~~~lvlIagGtGItP~~~il~~l~~~~~--~~~~ 175 (191)
++|.+|+||+++++||+|.|.|| +|.+...+. ..++++|||||||||||++|++++..++. ...+
T Consensus 130 ~~G~~S~~L~~l~~Gd~v~v~gP-----------~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~~~~~~~ 198 (314)
T 2rc5_A 130 FKGVCSNYMCDLKPGDEVTMTGP-----------SGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLIKFTGN 198 (314)
T ss_dssp SBCHHHHHHHTCCTTCEEEEEEE-----------ECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCSSCBCSC
T ss_pred CCcchHHHHhcCCCcCEEEEEec-----------cCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhcccCCCCc
Confidence 36889999999999999999999 998765443 46899999999999999999999986531 2368
Q ss_pred EEEEEeeCCCCceec
Q 046552 176 VYLIYANVTFYDILL 190 (191)
Q Consensus 176 i~Li~~~r~~~di~~ 190 (191)
++|+|++|+.+|++|
T Consensus 199 v~l~~g~r~~~d~~~ 213 (314)
T 2rc5_A 199 ITLVYGAPYSDELVM 213 (314)
T ss_dssp EEEEEEESSGGGSCS
T ss_pred EEEEEEeCCHHHHhH
Confidence 999999999999875
No 22
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=99.90 E-value=9.5e-24 Score=179.22 Aligned_cols=135 Identities=18% Similarity=0.196 Sum_probs=108.4
Q ss_pred CeEEEEEe-eeecCCCCCcEEEEEeeCC--CCC-eeeeeeecCcCCCC----CCEEEEEEEEe---------CCCccccc
Q 046552 45 KFNEFKLI-KRILGLPIGQHISCRGRDD--LGE-EVIKPYTPATLDSD----IGYFELVIKMY---------PQGRMSHH 107 (191)
Q Consensus 45 ~~~~~~l~-~~~~~~~pGQ~v~l~~~~~--~g~-~~~rpyT~~s~~~~----~~~l~l~Vk~~---------~~G~~S~~ 107 (191)
....+++. ...+.++||||+.|.++.. +|. ...|+|||++.|.+ .+.++|+||.. ++|.+|+|
T Consensus 56 ~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~ 135 (314)
T 1fnb_A 56 ETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNF 135 (314)
T ss_dssp CEEEEEEECTTCCCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHH
T ss_pred cEEEEEEecCCCCCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhH
Confidence 34455553 2247899999999998732 122 46899999998863 58999999975 56999999
Q ss_pred cccCCCCCEEEEeCCCCCccccccccccceEe-CCCCCceEEEEecCCCHHHHHHHHHHHHhCCC----CCceEEEEEee
Q 046552 108 VHELQEGDYLPLKGPDPSRRFDSLLLKGRFKY-QPGQVEAFGTLTGDTGIAPMFQVARAILENPN----DKTNVYLIYAN 182 (191)
Q Consensus 108 L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~-~~~~~~~lvlIagGtGItP~~~il~~l~~~~~----~~~~i~Li~~~ 182 (191)
|+++++||+|.|.|| +|++.. .....++++|||||||||||++|++++++++. ...+++|+|++
T Consensus 136 L~~l~~Gd~v~v~gP-----------~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~ 204 (314)
T 1fnb_A 136 LCDLKPGAEVKLTGP-----------VGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGV 204 (314)
T ss_dssp HHHCCTTCEEEEEEE-----------ECSTTCCBSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSEEEEEEEE
T ss_pred hhcCCCCCEEEEEec-----------cCCceeCCCCCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCCEEEEEec
Confidence 999999999999999 998754 33346899999999999999999999986531 13689999999
Q ss_pred CCCCceec
Q 046552 183 VTFYDILL 190 (191)
Q Consensus 183 r~~~di~~ 190 (191)
|+.+|++|
T Consensus 205 R~~~d~~~ 212 (314)
T 1fnb_A 205 PTSSSLLY 212 (314)
T ss_dssp SSGGGCCS
T ss_pred CCHHHhhh
Confidence 99999876
No 23
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=99.90 E-value=8.1e-24 Score=178.59 Aligned_cols=142 Identities=22% Similarity=0.239 Sum_probs=110.2
Q ss_pred CcCCCCC----CeEEEEEe--eeecCCCCCcEEEEEeeCC--CCC-eeeeeeecCcCCC----CCCEEEEEEEEe-----
Q 046552 38 KGCLDPE----KFNEFKLI--KRILGLPIGQHISCRGRDD--LGE-EVIKPYTPATLDS----DIGYFELVIKMY----- 99 (191)
Q Consensus 38 ~~~l~p~----~~~~~~l~--~~~~~~~pGQ~v~l~~~~~--~g~-~~~rpyT~~s~~~----~~~~l~l~Vk~~----- 99 (191)
...++++ ....+++. +..+.++||||+.|.++.. +|. ...|+|||+|.|. +.+.++|+||..
T Consensus 29 ~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~ 108 (304)
T 2bmw_A 29 NEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHP 108 (304)
T ss_dssp EEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSS
T ss_pred EEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCCEEEEEEEEEEeecc
Confidence 3445552 34445553 3357899999999998732 132 4679999999875 358999999972
Q ss_pred -----CCCccccccccCCCCCEEEEeCCCCCccccccccccceEe-CCCCCceEEEEecCCCHHHHHHHHHHHHhCCC--
Q 046552 100 -----PQGRMSHHVHELQEGDYLPLKGPDPSRRFDSLLLKGRFKY-QPGQVEAFGTLTGDTGIAPMFQVARAILENPN-- 171 (191)
Q Consensus 100 -----~~G~~S~~L~~l~~Gd~v~i~gP~~~~~~~~~~~~G~~~~-~~~~~~~lvlIagGtGItP~~~il~~l~~~~~-- 171 (191)
+.|.+|+||+++++||+|.|+|| +|.+.. ..+..++++||||||||||+++++++++.+..
T Consensus 109 ~~~~~~~G~~S~~L~~l~~Gd~v~v~gP-----------~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~ 177 (304)
T 2bmw_A 109 ESGETVYGVCSTYLTHIEPGSEVKITGP-----------VGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERA 177 (304)
T ss_dssp SSSSCEECHHHHHHHTCCTTCEEEEEEE-----------ECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHH
T ss_pred ccCcCCCcchhhHHhcCCCCCEEEEEec-----------cCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhhh
Confidence 25889999999999999999999 998654 33346899999999999999999999875420
Q ss_pred ------CCceEEEEEeeCCCCceec
Q 046552 172 ------DKTNVYLIYANVTFYDILL 190 (191)
Q Consensus 172 ------~~~~i~Li~~~r~~~di~~ 190 (191)
...+++|+|++|+.+|++|
T Consensus 178 ~~~~~~~~~~v~l~~g~r~~~d~~~ 202 (304)
T 2bmw_A 178 ANPEYQFKGFSWLVFGVPTTPNILY 202 (304)
T ss_dssp HCTTCCCCSCEEEEEEESSGGGCTT
T ss_pred cccccccCCCEEEEEEeCChHhcch
Confidence 1357999999999998875
No 24
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=99.89 E-value=2.9e-23 Score=182.66 Aligned_cols=135 Identities=20% Similarity=0.237 Sum_probs=108.5
Q ss_pred CeEEEEEe--eeecCCCCCcEEEEEeeCC--CCC-eeeeeeecCcCCCC----CCEEEEEEEEe----------CCCccc
Q 046552 45 KFNEFKLI--KRILGLPIGQHISCRGRDD--LGE-EVIKPYTPATLDSD----IGYFELVIKMY----------PQGRMS 105 (191)
Q Consensus 45 ~~~~~~l~--~~~~~~~pGQ~v~l~~~~~--~g~-~~~rpyT~~s~~~~----~~~l~l~Vk~~----------~~G~~S 105 (191)
....+++. +..+.++||||+.|+++.. +|. ..+|+|||++.|.+ .+.++|+||+. +.|.+|
T Consensus 141 ~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S 220 (402)
T 2b5o_A 141 TVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCS 220 (402)
T ss_dssp CEEEEEEECTTSCCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECTTTCCEEECHHH
T ss_pred cEEEEEEECCCCCCCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEEEeeecccccCcCCCCchh
Confidence 33455553 2248899999999997631 232 36899999998863 58999999983 368999
Q ss_pred cccccCCCC-CEEEEeCCCCCccccccccccceEe-CCCCCceEEEEecCCCHHHHHHHHHHHHhCCC----CCceEEEE
Q 046552 106 HHVHELQEG-DYLPLKGPDPSRRFDSLLLKGRFKY-QPGQVEAFGTLTGDTGIAPMFQVARAILENPN----DKTNVYLI 179 (191)
Q Consensus 106 ~~L~~l~~G-d~v~i~gP~~~~~~~~~~~~G~~~~-~~~~~~~lvlIagGtGItP~~~il~~l~~~~~----~~~~i~Li 179 (191)
+||+++++| |+|.|.|| +|++.. +.+..++++|||||||||||+++++++++++. ...+++|+
T Consensus 221 ~~L~~l~~G~d~v~v~gP-----------~G~~~~l~~~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~~~~~~v~L~ 289 (402)
T 2b5o_A 221 TYLCNLPVGTDDVKITGP-----------VGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLI 289 (402)
T ss_dssp HHHHTCCTTCCCEEEEEE-----------ECSTTCCCSCTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSCCCCSEEEEE
T ss_pred HHHhhCCCCCceEEEEcc-----------cCCcccCCccCCCCEEEEEcccCHHHHHHHHHHHHHhccccccccCCEEEE
Confidence 999999999 99999999 998753 33446899999999999999999999987642 13689999
Q ss_pred EeeCCCCceec
Q 046552 180 YANVTFYDILL 190 (191)
Q Consensus 180 ~~~r~~~di~~ 190 (191)
|++|+.+|++|
T Consensus 290 ~g~R~~~d~~~ 300 (402)
T 2b5o_A 290 FGVPYTANILY 300 (402)
T ss_dssp EEESSGGGCTT
T ss_pred EecCCHHHhHH
Confidence 99999999876
No 25
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.87 E-value=9.7e-22 Score=162.53 Aligned_cols=133 Identities=12% Similarity=0.065 Sum_probs=106.5
Q ss_pred CcCCCCCCeEEEEEeee---ec-CCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCC-CccccccccCC
Q 046552 38 KGCLDPEKFNEFKLIKR---IL-GLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQ-GRMSHHVHELQ 112 (191)
Q Consensus 38 ~~~l~p~~~~~~~l~~~---~~-~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~-G~~S~~L~~l~ 112 (191)
...++|+.+ ++++... .+ .++|||||.|+++..++....|+||+++.|. +.++|.++..++ |.+|+||++++
T Consensus 16 ~~~~t~~~~-~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~--~~~~i~~~~~~~~G~~S~~l~~l~ 92 (252)
T 2gpj_A 16 STYITPHML-RITLGGAGLAGFPADQESAYIKLLFPQAGERPLMRTYTIRQQRD--DEIDVDFVLHDTDGPASSWAKTAQ 92 (252)
T ss_dssp EEEEETTEE-EEEEESGGGTTCCSCCTTCEEEEEECCTTSCCEEEEEECCEEET--TEEEEEEECCSSCCHHHHHHHHCC
T ss_pred EEEcCCCEE-EEEEEcCChhhcCCCCCCCeEEEEcccCCCCCCCCceeeeccCC--CEEEEEEEEeCCCCcHHHHHhhCC
Confidence 344556653 4665322 22 4799999999998434567899999999765 688898888776 99999999999
Q ss_pred CCCEEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCcee
Q 046552 113 EGDYLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDIL 189 (191)
Q Consensus 113 ~Gd~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~ 189 (191)
+||+|.+.|| .|.|.+++. .++++||||||||||+++|++++.+ ..++++++.+++.+|+.
T Consensus 93 ~Gd~l~v~gP-----------~G~f~l~~~-~~~~lliagGtGitPi~s~l~~l~~----~~~~~~~~~~~~~~d~~ 153 (252)
T 2gpj_A 93 VGELIQIGGP-----------GLKKLINFE-ADWFLLAGDMTALPAISVNLAKLPN----NAVGYAVIEVLSEADIQ 153 (252)
T ss_dssp TTCEEEEEEE-----------ECCCCCCSS-SSEEEEEEEGGGHHHHHHHHHHSCT----TCEEEEEEEESSGGGCC
T ss_pred CCCEEEEecC-----------CCCCcCCCC-CceEEEEcchhhHHHHHHHHHhCCC----CCcEEEEEEECCHHHhh
Confidence 9999999999 998887654 4789999999999999999998832 24788888999888764
No 26
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.84 E-value=3.6e-22 Score=174.40 Aligned_cols=119 Identities=15% Similarity=0.182 Sum_probs=101.8
Q ss_pred cCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCC-CCEEEEEEEEe--------CCCcccccccc-CCCCCEEEEeCCCCC
Q 046552 56 LGLPIGQHISCRGRDDLGEEVIKPYTPATLDSD-IGYFELVIKMY--------PQGRMSHHVHE-LQEGDYLPLKGPDPS 125 (191)
Q Consensus 56 ~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~-~~~l~l~Vk~~--------~~G~~S~~L~~-l~~Gd~v~i~gP~~~ 125 (191)
..++||||+.+..+ ...|+|||+|.|.+ .+.++|+||.. ++|.+|.||++ +++||+|.+.||.
T Consensus 144 ~~~~~Gq~v~l~~~-----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~G~~S~~L~~~l~~Gd~v~v~~~~-- 216 (374)
T 1ddg_A 144 AQLDAEALINLLRP-----LTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEH-- 216 (374)
T ss_dssp CCCCHHHHHHHSCB-----CCCEEEEBCCCTTTSCSEEEEEEEECEEEETTEEEECHHHHHHHHSCCSSCEEEEEEEC--
T ss_pred CCCCHHHHHhhccC-----CCCccceecCCCCCCCCEEEEEEEEEEeecCCCCCCCCchHHHHhcCCCCCEEEEEEee--
Confidence 37999999998765 36799999999875 68999999987 56999999987 9999999999840
Q ss_pred ccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCC-Cceec
Q 046552 126 RRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTF-YDILL 190 (191)
Q Consensus 126 ~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~-~di~~ 190 (191)
.|.|.++.+..++++|||||||||||+++++++...+ ...+++|+|++|+. +|++|
T Consensus 217 --------~g~F~lp~~~~~piimIa~GtGIAP~~s~l~~~~~~~-~~~~~~L~~G~R~~~~d~ly 273 (374)
T 1ddg_A 217 --------NDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADE-APGKNWLFFGNPHFTEDFLY 273 (374)
T ss_dssp --------CTTSCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHT-CCSCEEEEEEESCHHHHCTT
T ss_pred --------CCCccCCCCCCCCEEEEECCccHHHHHHHHHHHHhcC-CCCCEEEEEEeCCchhhhhH
Confidence 6688877666689999999999999999999988654 34689999999997 67765
No 27
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.77 E-value=5.9e-19 Score=155.04 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=96.5
Q ss_pred CCCCCcEEEEEeeCCCCCeeeeeeecCcCCCC-CCEEEEEEEEeCC----------CccccccccCCCCCEEE--EeCCC
Q 046552 57 GLPIGQHISCRGRDDLGEEVIKPYTPATLDSD-IGYFELVIKMYPQ----------GRMSHHVHELQEGDYLP--LKGPD 123 (191)
Q Consensus 57 ~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~-~~~l~l~Vk~~~~----------G~~S~~L~~l~~Gd~v~--i~gP~ 123 (191)
..+++|++.+ +| ....|+|||+|.|.. .+.++|+|+..+. |.+|+||+++++||+|. |+||
T Consensus 156 ~~p~~~~l~~-lp----~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P- 229 (393)
T 4dql_A 156 EMKFSEFIAL-LP----SIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTP- 229 (393)
T ss_dssp CCCHHHHHHT-SC----BCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECC-
T ss_pred CCCHHHHHHh-CC----CCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcC-
Confidence 4566777765 33 246899999999875 4789999987633 88999999999999998 7899
Q ss_pred CCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHH---HhCCCCCceEEEEEeeCC-CCceec
Q 046552 124 PSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAI---LENPNDKTNVYLIYANVT-FYDILL 190 (191)
Q Consensus 124 ~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l---~~~~~~~~~i~Li~~~r~-~~di~~ 190 (191)
.|.|.++.+..++++|||||||||||++++++. .+++.+..+++|+|++|+ .+|++|
T Consensus 230 ----------~g~F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R~~~~d~ly 290 (393)
T 4dql_A 230 ----------QSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCRSPHEDYLY 290 (393)
T ss_dssp ----------SSCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTCCTT
T ss_pred ----------CCCcccCccCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEECCcchhhHH
Confidence 999988777668999999999999999999984 334434468999999999 578776
No 28
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.73 E-value=4.7e-18 Score=150.98 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=87.7
Q ss_pred eeeeeeecCcCCCC-CCEEEEEEEEe----C-------CCccccccccCCCCCEEEEeC-CCCCccccccccccceEeCC
Q 046552 75 EVIKPYTPATLDSD-IGYFELVIKMY----P-------QGRMSHHVHELQEGDYLPLKG-PDPSRRFDSLLLKGRFKYQP 141 (191)
Q Consensus 75 ~~~rpyT~~s~~~~-~~~l~l~Vk~~----~-------~G~~S~~L~~l~~Gd~v~i~g-P~~~~~~~~~~~~G~~~~~~ 141 (191)
...|+|||+|.|.+ .+.++|+|+.. + .|.+|.||+++++||+|.+.| | .|.|.++.
T Consensus 208 l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~-----------~g~F~lp~ 276 (435)
T 1f20_A 208 LQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRG-----------APSFHLPR 276 (435)
T ss_dssp CCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEEC-----------CTTSSCCS
T ss_pred CCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEec-----------CCCccCCC
Confidence 46799999999875 57899998853 2 278999999999999999999 5 67888776
Q ss_pred CCCceEEEEecCCCHHHHHHHHHHHHhC----CCCCceEEEEEeeCCCC-ceec
Q 046552 142 GQVEAFGTLTGDTGIAPMFQVARAILEN----PNDKTNVYLIYANVTFY-DILL 190 (191)
Q Consensus 142 ~~~~~lvlIagGtGItP~~~il~~l~~~----~~~~~~i~Li~~~r~~~-di~~ 190 (191)
+..++++|||||||||||+++++++... +....+++|+|++|+.+ |++|
T Consensus 277 ~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~~~~d~ly 330 (435)
T 1f20_A 277 NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIY 330 (435)
T ss_dssp CTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTT
T ss_pred CCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecccccchhH
Confidence 6668999999999999999999998753 12346899999999997 6665
No 29
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.70 E-value=5.5e-18 Score=158.15 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=94.4
Q ss_pred CCcEEEEEeeCCCCCeeeeeeecCcCCCC-CCEEEEEEEEe----C-------CCccccccccCCCCCEEEEeC-CCCCc
Q 046552 60 IGQHISCRGRDDLGEEVIKPYTPATLDSD-IGYFELVIKMY----P-------QGRMSHHVHELQEGDYLPLKG-PDPSR 126 (191)
Q Consensus 60 pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~-~~~l~l~Vk~~----~-------~G~~S~~L~~l~~Gd~v~i~g-P~~~~ 126 (191)
|+||+...+| ....|+|||+|.|.+ .+.++|+|+.. + .|.+|.||+++++||+|.+.+ |
T Consensus 418 p~~~l~~~lp----~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p---- 489 (688)
T 1tll_A 418 PATLLLTQLS----LLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRG---- 489 (688)
T ss_dssp CHHHHHHHSC----BCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEEC----
T ss_pred CHHHHHHhCc----ccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEecc----
Confidence 5666655555 246899999999875 57899988854 2 278999999999999999999 6
Q ss_pred cccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhC----CCCCceEEEEEeeCCCC-ceec
Q 046552 127 RFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILEN----PNDKTNVYLIYANVTFY-DILL 190 (191)
Q Consensus 127 ~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~----~~~~~~i~Li~~~r~~~-di~~ 190 (191)
.|.|.++.+..++++|||||||||||++|++++... +....+++|+|++|+.+ |++|
T Consensus 490 -------~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D~ly 551 (688)
T 1tll_A 490 -------APSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIY 551 (688)
T ss_dssp -------CGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTTCTT
T ss_pred -------CCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhhhhH
Confidence 678887766668999999999999999999998753 22346899999999997 7665
No 30
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.69 E-value=1.9e-17 Score=150.80 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=84.4
Q ss_pred eeeeeeecCcCCC-CCCEEEEEEEEe-----------CCCccccccccC-----------CCCC-------EEEEeCCCC
Q 046552 75 EVIKPYTPATLDS-DIGYFELVIKMY-----------PQGRMSHHVHEL-----------QEGD-------YLPLKGPDP 124 (191)
Q Consensus 75 ~~~rpyT~~s~~~-~~~~l~l~Vk~~-----------~~G~~S~~L~~l-----------~~Gd-------~v~i~gP~~ 124 (191)
...|+|||+|.|. +.+.++|+||.. +.|.+|.||+++ ++|| +|.|.+|
T Consensus 289 l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p-- 366 (539)
T 2qtl_A 289 LQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPR-- 366 (539)
T ss_dssp CCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEEC--
T ss_pred CcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEee--
Confidence 4679999999986 468999999987 458899999877 8999 9999999
Q ss_pred Ccccccccccc-ceEeCCCCCceEEEEecCCCHHHHHHHHHHHHh---CC--CCCceEEEEEeeCCC-CceecC
Q 046552 125 SRRFDSLLLKG-RFKYQPGQVEAFGTLTGDTGIAPMFQVARAILE---NP--NDKTNVYLIYANVTF-YDILLK 191 (191)
Q Consensus 125 ~~~~~~~~~~G-~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~---~~--~~~~~i~Li~~~r~~-~di~~~ 191 (191)
.| .|.+..+..++++|||||||||||++++++... .+ ....+++|+|++|+. +|++|+
T Consensus 367 ---------~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R~~~~D~ly~ 431 (539)
T 2qtl_A 367 ---------TTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFR 431 (539)
T ss_dssp ---------SCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEESCTTTCCTTH
T ss_pred ---------eCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEECCcchhhHHH
Confidence 75 787776666899999999999999999998532 11 124689999999999 688763
No 31
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.66 E-value=6.5e-18 Score=157.52 Aligned_cols=119 Identities=14% Similarity=0.101 Sum_probs=94.3
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCCCC-CCEEEEEEEE------------eCCCccccccccCCC-----------
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLDSD-IGYFELVIKM------------YPQGRMSHHVHELQE----------- 113 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~-~~~l~l~Vk~------------~~~G~~S~~L~~l~~----------- 113 (191)
-.|+|++...+| ....|+|||+|.|.+ .+.++|+|+. ...|.+|.||+++++
T Consensus 414 ~~p~~~l~~~lp----~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~ 489 (682)
T 2bpo_A 414 TVPMQFLVESVP----QMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETN 489 (682)
T ss_dssp TSCHHHHHHHSC----BCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSC
T ss_pred CCCHHHHHHhCc----ccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhcccccccccccccc
Confidence 457888777666 256899999999875 4788887743 235899999988877
Q ss_pred -CCEEEEeCCCCCccccccccccce--------------EeCCCCCceEEEEecCCCHHHHHHHHHHHHhCC--------
Q 046552 114 -GDYLPLKGPDPSRRFDSLLLKGRF--------------KYQPGQVEAFGTLTGDTGIAPMFQVARAILENP-------- 170 (191)
Q Consensus 114 -Gd~v~i~gP~~~~~~~~~~~~G~~--------------~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~-------- 170 (191)
|+++.++|| +|.| .++.+..++++|||+|||||||++++++.....
T Consensus 490 ~G~~v~i~GP-----------~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~ 558 (682)
T 2bpo_A 490 LPVHYDLNGP-----------RKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGN 558 (682)
T ss_dssp CCCCCCSSCG-----------GGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----
T ss_pred cccceeeccC-----------cCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccc
Confidence 999999999 7775 223344579999999999999999999987432
Q ss_pred -CCCceEEEEEeeCCCCceecC
Q 046552 171 -NDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 171 -~~~~~i~Li~~~r~~~di~~~ 191 (191)
....+++|+|++|+.+|++|+
T Consensus 559 g~~~~~~~L~fG~R~~~D~ly~ 580 (682)
T 2bpo_A 559 NVSLGKHILFYGSRNTDDFLYQ 580 (682)
T ss_dssp CCCCCCEEEEEEESSSSSCTTT
T ss_pred cCCcCCEEEEEecCChhhhhhH
Confidence 124689999999999998874
No 32
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.66 E-value=8.7e-17 Score=143.81 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=87.4
Q ss_pred CeeeeeeecCcCCCC-CCEEEEEEEEe---------CCCccccccccCCCCC------EEEEeCCCCCccccccccccce
Q 046552 74 EEVIKPYTPATLDSD-IGYFELVIKMY---------PQGRMSHHVHELQEGD------YLPLKGPDPSRRFDSLLLKGRF 137 (191)
Q Consensus 74 ~~~~rpyT~~s~~~~-~~~l~l~Vk~~---------~~G~~S~~L~~l~~Gd------~v~i~gP~~~~~~~~~~~~G~~ 137 (191)
....|+|||+|+|.. .+.++|+|+.. +.|.+|+||+++.+|+ +|.+.+| .|.|
T Consensus 231 ~l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p-----------~g~F 299 (458)
T 3qfs_A 231 RLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVR-----------KSQF 299 (458)
T ss_dssp BCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEE-----------CCSC
T ss_pred CCcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEec-----------CCCc
Confidence 467899999999865 57899988632 3589999999888765 6999999 9999
Q ss_pred EeCCCCCceEEEEecCCCHHHHHHHHHHHH---hCCCCCceEEEEEeeCCC-CceecC
Q 046552 138 KYQPGQVEAFGTLTGDTGIAPMFQVARAIL---ENPNDKTNVYLIYANVTF-YDILLK 191 (191)
Q Consensus 138 ~~~~~~~~~lvlIagGtGItP~~~il~~l~---~~~~~~~~i~Li~~~r~~-~di~~~ 191 (191)
.++.+..++++|||||||||||++++++.. +++.+..+++|+|++|+. +|++|+
T Consensus 300 ~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R~~~~D~ly~ 357 (458)
T 3qfs_A 300 RLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYR 357 (458)
T ss_dssp CCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEESCTTTSCTTH
T ss_pred ccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeCCchHhhhHH
Confidence 887766689999999999999999999853 333234689999999996 787763
No 33
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.65 E-value=1.6e-16 Score=146.71 Aligned_cols=106 Identities=15% Similarity=0.199 Sum_probs=85.7
Q ss_pred eeeeeeecCcCCCC-CCEEEEEEEE--e-------CCCccccccccCCC-CC-----EEEEeCCCCCccccccccccceE
Q 046552 75 EVIKPYTPATLDSD-IGYFELVIKM--Y-------PQGRMSHHVHELQE-GD-----YLPLKGPDPSRRFDSLLLKGRFK 138 (191)
Q Consensus 75 ~~~rpyT~~s~~~~-~~~l~l~Vk~--~-------~~G~~S~~L~~l~~-Gd-----~v~i~gP~~~~~~~~~~~~G~~~ 138 (191)
...|+|||+|+|.. .+.++|+|+. + +.|.+|+||+++.+ || +|.+.+| .|.|.
T Consensus 392 l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p-----------~g~F~ 460 (618)
T 3qe2_A 392 LQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVR-----------KSQFR 460 (618)
T ss_dssp CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEE-----------CCSCC
T ss_pred cccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEe-----------cCccc
Confidence 46799999999865 4778887643 2 34899999999888 88 9999999 99998
Q ss_pred eCCCCCceEEEEecCCCHHHHHHHHHHHHh---CCCCCceEEEEEeeCCC-CceecC
Q 046552 139 YQPGQVEAFGTLTGDTGIAPMFQVARAILE---NPNDKTNVYLIYANVTF-YDILLK 191 (191)
Q Consensus 139 ~~~~~~~~lvlIagGtGItP~~~il~~l~~---~~~~~~~i~Li~~~r~~-~di~~~ 191 (191)
++.+..++++|||||||||||++++++.+. ++.+..+++|+|++|+. +|++|+
T Consensus 461 lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R~~~~D~ly~ 517 (618)
T 3qe2_A 461 LPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCRRSDEDYLYR 517 (618)
T ss_dssp CCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEESCTTTSCTTH
T ss_pred CCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecCCCccccchH
Confidence 877666899999999999999999999763 33234689999999999 588763
No 34
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.41 E-value=1.2e-13 Score=106.69 Aligned_cols=65 Identities=25% Similarity=0.291 Sum_probs=47.3
Q ss_pred CCCCCE-EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCcee
Q 046552 111 LQEGDY-LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDIL 189 (191)
Q Consensus 111 l~~Gd~-v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~ 189 (191)
+++||+ +.++|| +|++...+ ..++++||||||||||+++|++++.+++ .+++|+ ++|+.+|++
T Consensus 1 L~~Gd~vl~v~gP-----------~G~~f~~~-~~~~~llIaGG~GItPl~sm~~~l~~~~---~~v~l~-g~r~~~d~~ 64 (158)
T 3lrx_A 1 MKEGDSLLNVAGP-----------LGTPVPME-KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVI 64 (158)
T ss_dssp -----------CC-----------CCCCBCCC-CCSEEEEEEETTHHHHHHHHHHHHHHHT---CEEEEE-EECBGGGCC
T ss_pred CcCCCEeeEEECC-----------CCCCCccC-CCCeEEEEEccCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhh
Confidence 579999 699999 99875444 4689999999999999999999998654 389999 999999988
Q ss_pred cC
Q 046552 190 LK 191 (191)
Q Consensus 190 ~~ 191 (191)
++
T Consensus 65 ~~ 66 (158)
T 3lrx_A 65 LK 66 (158)
T ss_dssp SH
T ss_pred HH
Confidence 63
No 35
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}
Probab=99.28 E-value=6.1e-13 Score=103.20 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=52.0
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCC------CCCceEEEEEeeCCCCcee
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENP------NDKTNVYLIYANVTFYDIL 189 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~------~~~~~i~Li~~~r~~~di~ 189 (191)
|.|+|| +|.+..+....++++||||||||||++++++++++.. ....+++|+|++|+.++++
T Consensus 1 v~v~GP-----------~G~~~~~~~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~ 68 (186)
T 3a1f_A 1 IAVDGP-----------FGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFE 68 (186)
T ss_dssp CCTTST-----------TSHHHHHHTTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTH
T ss_pred CeEECC-----------CCCCccChhhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHH
Confidence 357899 9998765556789999999999999999999998641 2357899999999999886
No 36
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=99.24 E-value=5.7e-12 Score=95.63 Aligned_cols=59 Identities=22% Similarity=0.208 Sum_probs=48.1
Q ss_pred EEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCHHHHHHHHHHHHhCCCCCceEEEEEeeCCCCceecC
Q 046552 117 LPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGIAPMFQVARAILENPNDKTNVYLIYANVTFYDILLK 191 (191)
Q Consensus 117 v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGItP~~~il~~l~~~~~~~~~i~Li~~~r~~~di~~~ 191 (191)
+.+.|| +|++...+. .++++|||||+||||+++|++++++++ .+++++ ++|+.+|++++
T Consensus 3 ~~v~GP-----------~G~~~~~~~-~~~~llIaGG~GiaPl~sm~~~l~~~~---~~v~l~-g~R~~~~~~~~ 61 (142)
T 3lyu_A 3 LNVAGP-----------LGTPVPMEK-FGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVTFEPMVILK 61 (142)
T ss_dssp ----CC-----------CSCCBCCCC-CSEEEEEEETTHHHHHHHHHHHHHHTT---CEEEEE-EEEEGGGCCSH
T ss_pred eeeeCC-----------CCCCccCCC-CCeEEEEECcCcHHHHHHHHHHHHhcC---CcEEEE-EeCCHHHhhHH
Confidence 478999 999876654 589999999999999999999998765 379999 99999998763
No 37
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=48.20 E-value=11 Score=27.95 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=40.1
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCCC---CCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLDS---DIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~---~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
...|..|.+... . ....+.|+++.+.. ..+. .+.....++.+-|-..++||+|.+..|
T Consensus 83 V~~Gs~V~l~~~-~--~~~~~~~~iVg~~ead~~~~~----~~IS~~SPlG~ALlGk~~GD~v~~~~p 143 (156)
T 2f23_A 83 IGLGSVVELEDP-L--SGERLSVQVVSPAEANVLDTP----MKISDASPMGKALLGHRVGDVLSLDTP 143 (156)
T ss_dssp CCTTCEEEEECT-T--TCCEEEEEEECGGGCBTTSSS----EEEETTSHHHHHHTTCCTTCEEEEEET
T ss_pred EEeCcEEEEEEc-C--CCCEEEEEEEChhHcCcCCCC----EEECCCCHHHHHHcCCCCCCEEEEEcC
Confidence 568898888753 2 23457888766432 3341 234445778888889999999999999
No 38
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=44.22 E-value=33 Score=24.95 Aligned_cols=59 Identities=12% Similarity=0.010 Sum_probs=39.1
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
...|..|.+... .++ ..+.|+++.....+.. . -|.....++.+-|-..++||+|.+..|
T Consensus 57 V~~Gs~V~l~d~-~~g--~~~~~~iVg~~ead~~-~--~~IS~~SPlG~ALlGk~vGD~v~v~~P 115 (141)
T 2pn0_A 57 VTMNSTVRFRVE-SSA--EEFCLTLVYPKDVDTS-G--EKISILAPVGSALLGLAQGDEIEWPKP 115 (141)
T ss_dssp CCTTCEEEEEET-TTC--CEEEEEEECGGGCCSS-S--CEEETTSTTHHHHTTCBTTCEEEEECT
T ss_pred EEeCcEEEEEEC-CCC--CEEEEEEECHhHcCcc-C--CEEcCCCHHHHHHcCCCCCCEEEEEcC
Confidence 567888888653 223 4578888765432111 0 123334677788889999999999999
No 39
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=37.29 E-value=79 Score=22.63 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=38.0
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCCC---CCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLDS---DIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~---~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
...|..|.+... .++ ..+.|+++.... ..+ |.....++.+-|-..++||+|.+..|
T Consensus 54 V~~Gs~V~l~~~-~~g--~~~~~~iVg~~ead~~~~------~IS~~SPlG~ALlGk~~GD~v~v~~p 112 (136)
T 3bmb_A 54 VTMNSRVKFRNL-SDG--EVRVRTLVYPAKMTDSNT------QLSVMAPVGAALLGLRVGDSIHWELP 112 (136)
T ss_dssp CCTTCEEEEEET-TTC--CEEEEEEECGGGCCCTTT------EEETTSHHHHHHTTCBTTCEEEEEET
T ss_pred EEeCcEEEEEEC-CCC--CEEEEEEEChHHcCcccc------EecCCCHHHHHHcCCCCCCEEEEEcC
Confidence 567888888653 223 357888865432 223 23334667778889999999999999
No 40
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=29.81 E-value=1.1e+02 Score=24.85 Aligned_cols=74 Identities=14% Similarity=-0.001 Sum_probs=37.1
Q ss_pred EEEEeeeecCCCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEE--------e----CCCccccccccCCCCC
Q 046552 48 EFKLIKRILGLPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKM--------Y----PQGRMSHHVHELQEGD 115 (191)
Q Consensus 48 ~~~l~~~~~~~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~--------~----~~G~~S~~L~~l~~Gd 115 (191)
.+.+......+.||+++.+.+.........-|.+-...... +..-+++.. . .+|....-+..|++||
T Consensus 260 ~~~~~~~~~~l~~G~~~~v~i~~~~~~~l~vP~~Av~~~~~-~~~V~v~~~~~~~~~~~V~~g~~~~~~v~V~~GL~~Gd 338 (359)
T 3lnn_A 260 RMVFDNPDGRLRPGMFAQATFLSQPHEGIVVPMSAIVQSGF-YTRAFVEVAPWQFEPRVIKLGAQIGDRMEVKSGLSAGD 338 (359)
T ss_dssp EEEEECSSCCCCTTCEEEEEEECCCEEEEEEEGGGCEETTT-TEEEEEESSTTEEEEEECCCCCCCSSEEECCSSCCTTC
T ss_pred EEEecCCCCCcCCCCEEEEEEecCCCCceEeCHHHheccCC-ceEEEEEecCCEEEEEEEEEeeEcCCEEEEecCCCCCC
Confidence 44444445679999999999873211122222222211211 233222200 0 1122223346788888
Q ss_pred EEEEeCC
Q 046552 116 YLPLKGP 122 (191)
Q Consensus 116 ~v~i~gP 122 (191)
.|-+.|.
T Consensus 339 ~VV~~g~ 345 (359)
T 3lnn_A 339 RVVVKEG 345 (359)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 8888876
No 41
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=29.18 E-value=26 Score=26.02 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=36.5
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
...|..|.+... .....+.|+++.....+.. . -+.....++.+-|-..++||+|.+..|
T Consensus 86 V~~Gs~V~l~~~---~~~~~~~y~iVg~~ead~~-~--~~IS~~SPlG~ALlGk~~GD~v~v~~p 144 (158)
T 1grj_A 86 VIFGATVTVLNL---DSDEEQTYRIVGDDEADFK-Q--NLISVNSPIARGLIGKEEDDVVVIKTP 144 (158)
T ss_dssp CCTTCEEEEEET---TTTEEEEEEEECTTTCBGG-G--TEEESSSHHHHHHTTCBTTCEECC---
T ss_pred EEeCcEEEEEEC---CCCCEEEEEEECHHHhCCc-C--CEEcCCCHHHHHHcCCCCCCEEEEEcC
Confidence 567888888653 2235688998865432111 0 022334677778889999999999999
No 42
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=28.87 E-value=82 Score=26.66 Aligned_cols=22 Identities=9% Similarity=-0.072 Sum_probs=16.1
Q ss_pred EEEEeeeecCCCCCcEEEEEee
Q 046552 48 EFKLIKRILGLPIGQHISCRGR 69 (191)
Q Consensus 48 ~~~l~~~~~~~~pGQ~v~l~~~ 69 (191)
++.+......++||+++.+.+.
T Consensus 297 ~i~l~n~~~~L~pGm~v~v~i~ 318 (413)
T 3ne5_B 297 RLEVDNADEALKPGMNAWLQLN 318 (413)
T ss_dssp EEEEECTTCCSCTTCEEEEEEE
T ss_pred EEEEECCCCccCCCCEEEEEEe
Confidence 4444444567999999998876
No 43
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=28.24 E-value=94 Score=22.94 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=38.1
Q ss_pred CCCCcEEEEEeeCCCCCeeeeeeecCcCCCCCCEEEEEEEEeCCCccccccccCCCCCEEEEeCC
Q 046552 58 LPIGQHISCRGRDDLGEEVIKPYTPATLDSDIGYFELVIKMYPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 58 ~~pGQ~v~l~~~~~~g~~~~rpyT~~s~~~~~~~l~l~Vk~~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
...|..|.+.. .++ ..+.|+++.....+.. . -+.....++.+-|-..++||+|.+..|
T Consensus 85 V~~Gs~V~l~~--~~g--~~~~y~iVg~~ead~~-~--~~IS~~SPlg~ALlGk~vGD~v~v~~P 142 (158)
T 2p4v_A 85 VFFGAWVEIEN--DDG--VTHRFRIVGYDEIFGR-K--DYISIDSPMARALLKKEVGDLAVVNTP 142 (158)
T ss_dssp CSSSCEEEEEC--TTC--CCEEEEBCCSTTCCSS-S--CCBCTTSHHHHHSTTCCTTCEEEEECS
T ss_pred EeccEEEEEEE--CCC--CEEEEEEECHHHcCcc-C--CeecCCCHHHHHhcCCCCCCEEEEEcC
Confidence 56788888864 223 3578998776542210 0 022334566677888999999999999
No 44
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=27.33 E-value=79 Score=25.97 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=17.2
Q ss_pred CCceEEEEecCCCHHHHHHHHHHHHhCC
Q 046552 143 QVEAFGTLTGDTGIAPMFQVARAILENP 170 (191)
Q Consensus 143 ~~~~lvlIagGtGItP~~~il~~l~~~~ 170 (191)
..+++++|+||.|.++ +++++.+
T Consensus 83 ~pk~VLIiGgGdG~~~-----revlk~~ 105 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAML-----REVTRHK 105 (294)
T ss_dssp CCCEEEEESCTTSHHH-----HHHHTCT
T ss_pred CCCeEEEECCCchHHH-----HHHHHcC
Confidence 3489999999999876 5555543
No 45
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.62 E-value=79 Score=19.30 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=12.7
Q ss_pred ccCCCCCEEEEe-CCCCC
Q 046552 109 HELQEGDYLPLK-GPDPS 125 (191)
Q Consensus 109 ~~l~~Gd~v~i~-gP~~~ 125 (191)
...++||+|+|. ||+.+
T Consensus 6 ~~f~~GD~V~V~~Gpf~g 23 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELIN 23 (59)
T ss_dssp SSCCTTSEEEECSSTTTT
T ss_pred ccCCCCCEEEEeecCCCC
Confidence 357899999865 99644
No 46
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=24.93 E-value=34 Score=26.44 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=21.0
Q ss_pred cccCCCCC--EEEEeCCCCCccccccccccceEeCCCCCceEEEEecCCCH
Q 046552 108 VHELQEGD--YLPLKGPDPSRRFDSLLLKGRFKYQPGQVEAFGTLTGDTGI 156 (191)
Q Consensus 108 L~~l~~Gd--~v~i~gP~~~~~~~~~~~~G~~~~~~~~~~~lvlIagGtGI 156 (191)
...+.-|| .|.+.|| + . + ..+..+-|.|||||
T Consensus 96 i~Tf~fGD~GhIsvqGp-----------y---~-t--~eDs~lAITGGTGi 129 (195)
T 4h6b_A 96 LYSFYFGDYGHISVQGP-----------Y---I-T--YEDSYLAITGGSGI 129 (195)
T ss_dssp EEEEECGGGCEEEEEEE-----------E---E-T--TBCEEEEEEEESGG
T ss_pred EEEEEecCCceEEEecc-----------e---e-c--cCceeEEEecCcce
Confidence 34455565 6778787 2 1 2 22567899999997
No 47
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.40 E-value=74 Score=25.74 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=17.1
Q ss_pred EEEEeeeecCCCCCcEEEEEeeC
Q 046552 48 EFKLIKRILGLPIGQHISCRGRD 70 (191)
Q Consensus 48 ~~~l~~~~~~~~pGQ~v~l~~~~ 70 (191)
++.+......+.||+++.+.+..
T Consensus 248 ~i~~~~~~~~l~~G~~~~v~i~~ 270 (341)
T 3fpp_A 248 RFEVPNPNGLLRLDMTAQVHIQL 270 (341)
T ss_dssp EEEEECSSSCCCTTCEEEEEEES
T ss_pred EEEeCCCccccCCCCEEEEEEEE
Confidence 45555556669999999999873
No 48
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=22.21 E-value=84 Score=20.54 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=11.9
Q ss_pred ccCCCCCEEEEeCC
Q 046552 109 HELQEGDYLPLKGP 122 (191)
Q Consensus 109 ~~l~~Gd~v~i~gP 122 (191)
..+.+||+|++-+|
T Consensus 28 N~f~~GD~iEi~~P 41 (89)
T 4he6_A 28 NHFRPGDEVEFFGP 41 (89)
T ss_dssp SCBCTTCEEEEEST
T ss_pred CCcCCCCEEEEEcC
Confidence 35788999999999
No 49
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=21.47 E-value=1.2e+02 Score=20.58 Aligned_cols=15 Identities=27% Similarity=0.603 Sum_probs=13.0
Q ss_pred cccCCCCCEEEEeCC
Q 046552 108 VHELQEGDYLPLKGP 122 (191)
Q Consensus 108 L~~l~~Gd~v~i~gP 122 (191)
+..+++|+.+.++|-
T Consensus 68 ~~~l~~G~vv~i~g~ 82 (115)
T 2k50_A 68 LKKFREGDVIRIKDV 82 (115)
T ss_dssp GGTCCTTSEEEEEEE
T ss_pred hhcCCCCCEEEEEee
Confidence 357899999999997
No 50
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=21.10 E-value=1.6e+02 Score=20.94 Aligned_cols=42 Identities=5% Similarity=-0.107 Sum_probs=25.7
Q ss_pred eecCcCCCCCCEEEEEEEE--eCCCccccccccCCCCCEEEEeCC
Q 046552 80 YTPATLDSDIGYFELVIKM--YPQGRMSHHVHELQEGDYLPLKGP 122 (191)
Q Consensus 80 yT~~s~~~~~~~l~l~Vk~--~~~G~~S~~L~~l~~Gd~v~i~gP 122 (191)
|.-.+.|. .|..-|.=-+ ..++.+=..|.++++||.|.|.-+
T Consensus 43 ~~~t~~pG-~gn~viaGH~~~~~~~~~F~~L~~l~~Gd~i~v~~~ 86 (145)
T 1t2w_A 43 AEENESLD-DQNISIAGHTFIDRPNYQFTNLKAAKKGSMVYFKVG 86 (145)
T ss_dssp SSTTCCTT-SSEEEEEEECCTTSTTSTTTTGGGCCTTCEEEEEET
T ss_pred ecCCCCCC-CceEEEEEecCCCCCCcccCChhhCCCCCEEEEEEC
Confidence 34444555 4665444333 112333355789999999999988
No 51
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=20.65 E-value=86 Score=18.76 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=11.7
Q ss_pred cCCCCCEEEEe-CCCCC
Q 046552 110 ELQEGDYLPLK-GPDPS 125 (191)
Q Consensus 110 ~l~~Gd~v~i~-gP~~~ 125 (191)
.+++||+|.|. ||+.+
T Consensus 4 ~~~~Gd~V~V~~Gpf~g 20 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFAD 20 (58)
T ss_dssp SCCTTCEEEECSGGGTT
T ss_pred ccCCCCEEEEeecCCCC
Confidence 46789999755 89544
Done!