BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046555
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EA7|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-1
Length = 434
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 353 PVISDLFSHWVEGLLKRCPNLRRLVIFGVISEIKTHEECLLLAKFTSSIVQLM 405
P+ S+ F W E ++ P L+ L +F IS + E LLL ++S + +M
Sbjct: 241 PIYSNKFGRWYEMTPEKNPQLKDLDVF--ISSVDMKEGALLLPHYSSKAIVIM 291
>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-3
Length = 433
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 353 PVISDLFSHWVEGLLKRCPNLRRLVIFGVISEIKTHEECLLLAKFTSSIVQLM 405
P+ S+ F W E ++ P L+ L +F IS + E LLL + S + +M
Sbjct: 240 PIYSNKFGRWYEMTPEKNPQLKDLDVF--ISSVDMKEGALLLPHYNSKAIVIM 290
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 329 DGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFGVISEIKTH 388
+G+ H L+G A + + VL+L + L S + LK PNLR L +
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL---------- 250
Query: 389 EECLLLAKFTSSIVQLMRKYLHVEVQ 414
+CLL A+ +++V K ++ +Q
Sbjct: 251 NDCLLSARGAAAVVDAFSKLENIGLQ 276
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 329 DGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFGVISEIKTH 388
+G+ H L+G A + + VL+L + L S + LK PNLR L +
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL---------- 251
Query: 389 EECLLLAKFTSSIVQLMRKYLHVEVQ 414
+CLL A+ +++V K ++ +Q
Sbjct: 252 NDCLLSARGAAAVVDAFSKLENIGLQ 277
>pdb|2FCA|A Chain A, The Structure Of Bstrmb
pdb|2FCA|B Chain B, The Structure Of Bstrmb
Length = 213
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 152 KSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPT-LKSIYVEAI 210
++ ++Y+ I L S+++TA QK++ E + ++ +DA ++ P +K +Y+
Sbjct: 59 QNPDINYIGIE-LFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117
Query: 211 SLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDD 250
D + + RL + E++G+G HFK D+
Sbjct: 118 --DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155
>pdb|3IIE|A Chain A, 1-deoxy-d-xylulose 5-phosphate Reductoisomerase From
Yersinia Pestis.
pdb|3IIE|B Chain B, 1-deoxy-d-xylulose 5-phosphate Reductoisomerase From
Yersinia Pestis
Length = 401
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
Query: 107 LYYNVRTTPNVNILEICGRQKLEVLALAHNTITGVEPNFQRFPCLK 152
+ Y +R + V L+ C +V AL T P++QR+PCLK
Sbjct: 287 MAYPMRVSSGVAPLDFC-----KVGALTFTT-----PDYQRYPCLK 322
>pdb|3IFR|A Chain A, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
pdb|3IFR|B Chain B, The Crystal Structure Of Xylulose Kinase From
Rhodospirillum Rubrum
Length = 508
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 10 GNILSRLGGARDVVIASATCKK 31
G++L + GGA D+++ASAT K
Sbjct: 259 GDVLLKFGGAGDIIVASATAKS 280
>pdb|1Q25|A Chain A, Crystal Structure Of N-terminal 3 Domains Of Ci-mpr
pdb|1SYO|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SYO|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SZ0|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SZ0|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
Length = 432
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 149 PCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186
P +K+ V S D SL + C+ IE+L SP++
Sbjct: 150 PLIKTSGAYLVDDSDPDTSLFINVCRDIEVLRASSPQV 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,840,153
Number of Sequences: 62578
Number of extensions: 398206
Number of successful extensions: 906
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 13
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)