Query 046555
Match_columns 418
No_of_seqs 189 out of 1404
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 13:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.9 8.5E-24 1.8E-28 198.7 -6.1 360 3-417 74-460 (483)
2 KOG2120 SCF ubiquitin ligase, 99.6 5.1E-18 1.1E-22 153.6 -5.5 280 2-319 99-390 (419)
3 KOG2120 SCF ubiquitin ligase, 98.6 3.4E-09 7.5E-14 96.8 -1.5 221 126-377 159-393 (419)
4 PLN00113 leucine-rich repeat r 98.5 1.4E-07 3E-12 104.6 7.5 239 125-380 92-341 (968)
5 cd00116 LRR_RI Leucine-rich re 98.5 5.3E-08 1.1E-12 93.6 2.9 119 262-380 164-287 (319)
6 PLN00113 leucine-rich repeat r 98.5 3.4E-07 7.5E-12 101.5 8.5 149 219-379 235-388 (968)
7 PF12937 F-box-like: F-box-lik 98.4 8.8E-08 1.9E-12 64.5 1.6 36 1-37 1-36 (47)
8 KOG4341 F-box protein containi 98.4 7E-08 1.5E-12 92.1 -0.1 160 147-323 292-459 (483)
9 KOG4194 Membrane glycoprotein 98.3 3.9E-08 8.4E-13 97.4 -4.2 195 126-326 197-426 (873)
10 cd00116 LRR_RI Leucine-rich re 98.3 3.8E-07 8.2E-12 87.7 2.7 116 263-381 137-260 (319)
11 PLN03210 Resistant to P. syrin 98.2 1.1E-05 2.4E-10 90.7 11.5 100 126-231 611-715 (1153)
12 KOG3207 Beta-tubulin folding c 98.1 4.2E-07 9E-12 87.4 -0.7 106 126-233 172-284 (505)
13 KOG4194 Membrane glycoprotein 98.1 1.1E-06 2.3E-11 87.5 0.7 145 126-274 173-328 (873)
14 KOG1909 Ran GTPase-activating 98.0 1.4E-06 3E-11 81.7 0.8 190 164-382 110-309 (382)
15 PF00646 F-box: F-box domain; 97.8 2.5E-06 5.4E-11 57.6 -0.8 36 2-38 4-39 (48)
16 PLN03210 Resistant to P. syrin 97.8 4.3E-05 9.3E-10 86.1 7.0 106 125-234 633-739 (1153)
17 smart00256 FBOX A Receptor for 97.7 1E-05 2.2E-10 52.4 0.4 34 4-38 1-34 (41)
18 PRK15387 E3 ubiquitin-protein 97.6 7E-05 1.5E-09 79.6 5.7 31 126-159 242-272 (788)
19 KOG3207 Beta-tubulin folding c 97.5 1.1E-05 2.4E-10 77.8 -1.5 105 126-231 121-233 (505)
20 PRK15387 E3 ubiquitin-protein 97.5 0.00027 5.7E-09 75.3 7.4 131 126-273 222-352 (788)
21 PF14580 LRR_9: Leucine-rich r 97.4 3.2E-05 7E-10 67.4 -0.7 35 127-161 20-54 (175)
22 PRK15370 E3 ubiquitin-protein 97.3 0.00017 3.8E-09 76.8 4.0 177 126-326 199-377 (754)
23 KOG3665 ZYG-1-like serine/thre 97.3 3.7E-05 8.1E-10 81.0 -1.4 155 123-294 119-281 (699)
24 KOG1909 Ran GTPase-activating 97.2 0.00018 3.9E-09 67.8 2.7 228 126-380 30-279 (382)
25 PF07723 LRR_2: Leucine Rich R 97.2 0.00036 7.9E-09 40.2 2.7 25 150-174 1-26 (26)
26 KOG1947 Leucine rich repeat pr 97.2 8E-05 1.7E-09 75.6 -0.3 139 148-322 187-327 (482)
27 KOG1947 Leucine rich repeat pr 97.2 2E-05 4.3E-10 80.0 -4.9 107 124-230 212-331 (482)
28 KOG3665 ZYG-1-like serine/thre 97.0 0.00037 7.9E-09 73.7 2.3 91 283-379 190-283 (699)
29 PF14580 LRR_9: Leucine-rich r 96.9 0.00014 3.1E-09 63.3 -1.2 60 126-187 42-101 (175)
30 PF13855 LRR_8: Leucine rich r 96.8 0.00032 6.9E-09 49.8 0.4 59 126-185 1-60 (61)
31 KOG0444 Cytoskeletal regulator 96.7 1.8E-05 3.9E-10 79.5 -9.3 166 126-299 78-256 (1255)
32 PRK15370 E3 ubiquitin-protein 96.6 0.0012 2.7E-08 70.4 3.1 159 126-300 220-379 (754)
33 KOG2982 Uncharacterized conser 96.1 0.0013 2.8E-08 61.0 -0.5 104 127-232 46-158 (418)
34 KOG0618 Serine/threonine phosp 95.8 0.0016 3.6E-08 68.6 -1.2 34 199-232 451-488 (1081)
35 KOG1644 U2-associated snRNP A' 95.5 0.017 3.7E-07 50.8 4.1 85 126-230 64-150 (233)
36 KOG0444 Cytoskeletal regulator 95.4 0.00057 1.2E-08 69.1 -5.9 55 220-274 222-279 (1255)
37 KOG2982 Uncharacterized conser 95.3 0.0099 2.1E-07 55.3 2.2 127 102-232 71-211 (418)
38 KOG3864 Uncharacterized conser 95.1 0.029 6.4E-07 49.3 4.4 93 281-415 118-210 (221)
39 KOG0618 Serine/threonine phosp 95.1 0.0016 3.4E-08 68.8 -4.2 101 126-233 359-465 (1081)
40 PF12799 LRR_4: Leucine Rich r 95.1 0.0051 1.1E-07 40.4 -0.4 35 127-161 2-36 (44)
41 COG5238 RNA1 Ran GTPase-activa 95.0 0.005 1.1E-07 56.5 -0.8 64 316-379 185-250 (388)
42 PLN03215 ascorbic acid mannose 93.9 0.02 4.3E-07 55.7 0.5 36 2-37 5-40 (373)
43 KOG1259 Nischarin, modulator o 93.9 0.0028 6.2E-08 58.8 -4.9 101 126-232 284-386 (490)
44 PF13855 LRR_8: Leucine rich r 93.5 0.058 1.3E-06 37.9 2.3 53 103-159 2-59 (61)
45 KOG0617 Ras suppressor protein 92.8 0.004 8.8E-08 53.3 -5.3 34 126-159 33-66 (264)
46 PF12799 LRR_4: Leucine Rich r 92.3 0.06 1.3E-06 35.3 0.9 36 149-186 1-36 (44)
47 COG5238 RNA1 Ran GTPase-activa 92.2 0.096 2.1E-06 48.3 2.4 154 164-328 110-284 (388)
48 KOG1259 Nischarin, modulator o 91.5 0.3 6.5E-06 45.8 4.8 232 126-371 182-430 (490)
49 KOG1644 U2-associated snRNP A' 90.7 0.46 1E-05 42.0 4.9 99 126-249 42-148 (233)
50 COG4886 Leucine-rich repeat (L 90.3 0.21 4.4E-06 49.6 2.8 100 126-230 116-219 (394)
51 KOG2997 F-box protein FBX9 [Ge 90.3 0.073 1.6E-06 49.8 -0.3 37 1-37 107-147 (366)
52 PLN03150 hypothetical protein; 88.5 0.29 6.2E-06 51.8 2.4 57 128-185 420-477 (623)
53 KOG0281 Beta-TrCP (transducin 88.3 0.13 2.9E-06 48.5 -0.2 34 1-35 75-112 (499)
54 smart00367 LRR_CC Leucine-rich 87.7 0.31 6.7E-06 27.8 1.2 23 148-170 1-24 (26)
55 KOG3864 Uncharacterized conser 86.4 0.16 3.5E-06 44.8 -0.7 43 259-301 147-189 (221)
56 KOG0617 Ras suppressor protein 85.6 0.031 6.8E-07 47.9 -5.4 57 126-186 56-114 (264)
57 PLN03150 hypothetical protein; 84.9 0.51 1.1E-05 49.9 1.9 61 125-186 441-502 (623)
58 PRK15386 type III secretion pr 83.3 1.7 3.6E-05 43.2 4.5 90 126-232 72-168 (426)
59 KOG2739 Leucine-rich acidic nu 83.0 0.58 1.3E-05 42.9 1.2 90 285-379 62-151 (260)
60 smart00579 FBD domain in FBox 82.9 3 6.5E-05 30.2 4.8 66 341-415 6-71 (72)
61 KOG1859 Leucine-rich repeat pr 79.8 0.045 9.7E-07 56.9 -7.8 52 130-184 168-219 (1096)
62 KOG2739 Leucine-rich acidic nu 79.5 0.64 1.4E-05 42.6 0.2 60 126-186 43-103 (260)
63 PF13516 LRR_6: Leucine Rich r 79.0 1.2 2.7E-05 24.6 1.2 20 149-168 2-21 (24)
64 COG4886 Leucine-rich repeat (L 78.7 0.94 2E-05 44.8 1.2 58 127-186 141-198 (394)
65 KOG4237 Extracellular matrix p 76.9 0.23 5.1E-06 48.1 -3.5 16 311-326 317-332 (498)
66 PRK15386 type III secretion pr 74.5 7.6 0.00016 38.7 6.1 92 126-231 94-188 (426)
67 PF00560 LRR_1: Leucine Rich R 72.4 2 4.4E-05 23.2 1.0 14 127-140 1-14 (22)
68 KOG2123 Uncharacterized conser 72.4 0.35 7.5E-06 44.9 -3.4 32 202-233 21-54 (388)
69 PF13504 LRR_7: Leucine rich r 72.1 2.8 6.1E-05 21.2 1.4 14 220-233 1-14 (17)
70 KOG0531 Protein phosphatase 1, 69.8 0.91 2E-05 45.4 -1.5 99 126-232 95-198 (414)
71 KOG1859 Leucine-rich repeat pr 69.3 0.29 6.3E-06 51.2 -5.1 99 126-232 187-291 (1096)
72 KOG2123 Uncharacterized conser 67.6 1.2 2.6E-05 41.5 -1.1 58 126-184 41-98 (388)
73 KOG0274 Cdc4 and related F-box 67.2 1.4 3.1E-05 45.5 -0.7 34 1-35 108-141 (537)
74 KOG4237 Extracellular matrix p 66.8 3.1 6.7E-05 40.7 1.5 61 126-187 274-335 (498)
75 KOG0531 Protein phosphatase 1, 65.8 0.64 1.4E-05 46.6 -3.6 103 126-234 72-176 (414)
76 KOG4579 Leucine-rich repeat (L 59.7 2.4 5.2E-05 35.4 -0.5 59 126-186 53-112 (177)
77 PF13013 F-box-like_2: F-box-l 59.6 2.9 6.3E-05 33.3 -0.1 17 1-17 22-38 (109)
78 PF08387 FBD: FBD; InterPro: 54.6 12 0.00026 25.2 2.3 19 361-379 32-50 (51)
79 KOG0472 Leucine-rich repeat pr 39.4 7.5 0.00016 38.3 -0.8 37 126-162 435-471 (565)
80 smart00368 LRR_RI Leucine rich 38.6 23 0.0005 20.3 1.5 19 150-168 3-21 (28)
81 KOG4658 Apoptotic ATPase [Sign 28.4 25 0.00054 38.9 0.9 12 315-326 769-780 (889)
82 KOG4658 Apoptotic ATPase [Sign 26.9 36 0.00077 37.7 1.7 39 259-298 567-605 (889)
83 smart00370 LRR Leucine-rich re 25.9 29 0.00064 19.2 0.5 16 126-141 2-17 (26)
84 smart00369 LRR_TYP Leucine-ric 25.9 29 0.00064 19.2 0.5 16 126-141 2-17 (26)
85 PF02061 Lambda_CIII: Lambda P 22.4 46 0.00099 21.2 0.9 24 2-37 14-37 (45)
86 PF07735 FBA_2: F-box associat 20.1 1.2E+02 0.0025 21.4 2.8 30 152-181 35-69 (70)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.85 E-value=8.5e-24 Score=198.68 Aligned_cols=360 Identities=22% Similarity=0.306 Sum_probs=200.2
Q ss_pred CCcHHHHHHHHccCCccceeeecccccchHHHHHccCC--CcEEeecCCCccccccchhHHHHHHHHHHhcCCC-eeeEE
Q 046555 3 QLPVEVIGNILSRLGGARDVVIASATCKKWQEAYRKHL--HTLSFNSNDWSVYHDLTTTRLEILITQTIFQTSG-LQGLS 79 (418)
Q Consensus 3 ~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~~~~--~~l~f~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-l~~l~ 79 (418)
.||.|++.+|||+|+ +.+...++++|+-|..+.-... ..++ -.+++. |... ..|..++.+..| +++++
T Consensus 74 ~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~id--L~t~~r--Dv~g----~VV~~~~~Rcgg~lk~LS 144 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHID--LFTFQR--DVDG----GVVENMISRCGGFLKELS 144 (483)
T ss_pred cCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeee--hhcchh--cCCC----cceehHhhhhcccccccc
Confidence 599999999999999 5688889999999998742211 0011 011111 1111 123333344455 88888
Q ss_pred EEecCCCCCChHHHHHHHHHhhCCceEEEEeecCCCCccccccccccceeEEEEece-EecC--CCCCCccccccceeEE
Q 046555 80 ILMDDVDEFSASTVIAWLMYTRETLRRLYYNVRTTPNVNILEICGRQKLEVLALAHN-TITG--VEPNFQRFPCLKSLSL 156 (418)
Q Consensus 80 l~~~~~~~~~~~~v~~wl~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~-~l~~--~~~~~~~~p~L~~L~L 156 (418)
++....-. ...+. .+. --||+++.|++.+| .+++ ....+..|+.|+.|.|
T Consensus 145 lrG~r~v~--~sslr------------------------t~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L 197 (483)
T KOG4341|consen 145 LRGCRAVG--DSSLR------------------------TFA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNL 197 (483)
T ss_pred ccccccCC--cchhh------------------------HHh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhh
Confidence 87632111 11111 111 11355555555555 3433 1123445555666666
Q ss_pred eeE-EecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEEEEEee------ccceEEEeCCCccEEEeec
Q 046555 157 SYV-SISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSIYVEAI------SLDKFILEADSIERLHLKD 229 (418)
Q Consensus 157 ~~v-~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~------~~~~~~~~~P~L~~L~l~~ 229 (418)
..| .+++..++.+..+||+|++|++++|.-...++...+.--...++.+...++ .+..+.-.+|.+.++++..
T Consensus 198 ~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 198 HSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH 277 (483)
T ss_pred cccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh
Confidence 553 355555555556666666666655432212221111111112333322222 0111112233344444333
Q ss_pred cceee-EE--Eec--CCceeEEEeccee-EE---eeccCCCcCCceeEEeeccccchHHHHHhhhc-CCCccEEEEcccc
Q 046555 230 CALEL-FE--LVG--RGTLKHFKIDDVS-VI---HLDIGDTVDNLEIVDVSSFTIFWPKFYQMISR-SSKLKKLRLWDVV 299 (418)
Q Consensus 230 ~~~~~-~~--~~~--~~~L~~l~l~~~~-~~---~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~~-~~~L~~L~L~~~~ 299 (418)
|..-+ .. .+. ...++.+...... +. ...+++..++|+.+.+..+....+..+.++++ ++.|+.|.+.++.
T Consensus 278 c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 278 CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 31100 00 000 0111111111110 00 12457788999999999998888888888865 5689999887765
Q ss_pred cCccccccHhHHhhcCCCCceeeeeee---cccceecccccCCCCcceEEEEecCCc-ccccchHHHHHHHHhcCcccce
Q 046555 300 FDEDEVLDLETIGVCFPQLSHLSLSYD---LKDGVLHYGLQGSANLENVAVLELGWP-VISDLFSHWVEGLLKRCPNLRR 375 (418)
Q Consensus 300 ~~~~~~~~~~~l~~~fp~L~~L~l~~~---~~~~~l~~~l~~~~~Le~l~vl~l~~~-~~~d~~~~~l~~ll~~c~~Lk~ 375 (418)
...+. .+..+...+|.|+.|+++++ .++|..+..- ....++.+.+++++.+ .+.|. ..+.+..|++||+
T Consensus 358 ~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~-~~c~~~~l~~lEL~n~p~i~d~----~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 358 LITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSS-SSCSLEGLEVLELDNCPLITDA----TLEHLSICRNLER 430 (483)
T ss_pred eehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhh-ccccccccceeeecCCCCchHH----HHHHHhhCcccce
Confidence 44222 35667889999999999975 3454443222 2234678888888754 45552 4566889999999
Q ss_pred EEEeeeeeecccchhhhhhHHHHHHHHHHhHhcceeEEEEee
Q 046555 376 LVIFGVISEIKTHEECLLLAKFTSSIVQLMRKYLHVEVQFDY 417 (418)
Q Consensus 376 L~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 417 (418)
++++ +|+.+++ ++|.+++.+.||++||+||
T Consensus 431 i~l~----------~~q~vtk--~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 431 IELI----------DCQDVTK--EAISRFATHLPNIKVHAYF 460 (483)
T ss_pred eeee----------chhhhhh--hhhHHHHhhCccceehhhc
Confidence 8887 6887777 5999999999999999998
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.1e-18 Score=153.60 Aligned_cols=280 Identities=18% Similarity=0.250 Sum_probs=166.9
Q ss_pred CCCcHHHHHHHHccCCccceeeecccccchHHHHHccCCCcEEeecCCCccccccchhHHHHHHHHHHhcCCCeeeEEEE
Q 046555 2 EQLPVEVIGNILSRLGGARDVVIASATCKKWQEAYRKHLHTLSFNSNDWSVYHDLTTTRLEILITQTIFQTSGLQGLSIL 81 (418)
Q Consensus 2 s~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~~~~~~l~f~~~~~~~~~~~~~~~~~~~v~~~l~~~~~l~~l~l~ 81 (418)
..||||++..|||.|+ .++...++.|||||.++-.....+...+..+ +...+.... +++ ..|+..|++.
T Consensus 99 ~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~----r~i~p~~l~----~l~--~rgV~v~Rla 167 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTG----RNIHPDVLG----RLL--SRGVIVFRLA 167 (419)
T ss_pred ccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCC----CccChhHHH----HHH--hCCeEEEEcc
Confidence 4799999999999999 5788888899999999754332221211111 112222222 222 2455555554
Q ss_pred ecCCCCCChHHHHHHHHHhhCCceEEEEe---ecCCCCccccccccccceeEEEEeceEecCC-CCCCccccccceeEEe
Q 046555 82 MDDVDEFSASTVIAWLMYTRETLRRLYYN---VRTTPNVNILEICGRQKLEVLALAHNTITGV-EPNFQRFPCLKSLSLS 157 (418)
Q Consensus 82 ~~~~~~~~~~~v~~wl~~~~~~l~~L~l~---~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~p~L~~L~L~ 157 (418)
.....+ ++-+.....+ +.+++.+++. +......+++.. |..|+.|.|.|+.+.|. ....+.-.+|+.|+|+
T Consensus 168 r~~~~~--prlae~~~~f-rsRlq~lDLS~s~it~stl~~iLs~--C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnls 242 (419)
T KOG2120|consen 168 RSFMDQ--PRLAEHFSPF-RSRLQHLDLSNSVITVSTLHGILSQ--CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLS 242 (419)
T ss_pred hhhhcC--chhhhhhhhh-hhhhHHhhcchhheeHHHHHHHHHH--HHhhhhccccccccCcHHHHHHhccccceeeccc
Confidence 321221 1111110111 1457888883 111111134442 58999999999998872 1112334779999999
Q ss_pred eEE-ecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEEEEEee-------ccceEEEeCCCccEEEeec
Q 046555 158 YVS-ISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSIYVEAI-------SLDKFILEADSIERLHLKD 229 (418)
Q Consensus 158 ~v~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~-------~~~~~~~~~P~L~~L~l~~ 229 (418)
.+. |+..+++-++++|..|..|+|+.|...+......+.-.+++|+.|+++++ ++..+...||+|..|++++
T Consensus 243 m~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 243 MCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred cccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 985 89999999999999999999999755433211112224688999999865 1223344589999999998
Q ss_pred cceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHh
Q 046555 230 CALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLE 309 (418)
Q Consensus 230 ~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 309 (418)
|.. +.+. . +.....++.|++++++.|-...+..+-.+...|.|..|++.++.-+ -..+
T Consensus 323 ~v~---------------l~~~-~--~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd----t~me 380 (419)
T KOG2120|consen 323 SVM---------------LKND-C--FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD----TTME 380 (419)
T ss_pred ccc---------------cCch-H--HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc----hHHH
Confidence 753 1110 0 0111246778888887765444444434566778888887766433 1233
Q ss_pred HHhhcCCCCc
Q 046555 310 TIGVCFPQLS 319 (418)
Q Consensus 310 ~l~~~fp~L~ 319 (418)
.+-..+|+|+
T Consensus 381 l~~e~~~~lk 390 (419)
T KOG2120|consen 381 LLKEMLSHLK 390 (419)
T ss_pred HHHHhCcccc
Confidence 3444556554
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.4e-09 Score=96.82 Aligned_cols=221 Identities=22% Similarity=0.274 Sum_probs=131.0
Q ss_pred cceeEEEEeceEecC--CCCCCccc-cccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEe-cCCc
Q 046555 126 QKLEVLALAHNTITG--VEPNFQRF-PCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVEL-TSPT 201 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~--~~~~~~~~-p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i-~~~~ 201 (418)
....++++..-...+ ..+-+..| .+|+.|+|+.-.++...++.+++.|.+|+.|.|++.+. ++... ..| ....
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L--dD~I~-~~iAkN~~ 235 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL--DDPIV-NTIAKNSN 235 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc--CcHHH-HHHhcccc
Confidence 455666665432221 12223344 35999999998899999999999999999999998654 22221 122 2467
Q ss_pred ccEEEEEee-ccce-----EEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeecccc
Q 046555 202 LKSIYVEAI-SLDK-----FILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTI 275 (418)
Q Consensus 202 L~~L~l~~~-~~~~-----~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~ 275 (418)
|+.++++.+ ++.. +.-.|..|.+|+++.|.... +.+. ..+..-.++|+.|+++++.-
T Consensus 236 L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~--------------~~Vt---v~V~hise~l~~LNlsG~rr 298 (419)
T KOG2120|consen 236 LVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFT--------------EKVT---VAVAHISETLTQLNLSGYRR 298 (419)
T ss_pred ceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccc--------------hhhh---HHHhhhchhhhhhhhhhhHh
Confidence 888888843 3322 33358899999999986410 0011 11112235666777766532
Q ss_pred c--hHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeec--ccceecccccCCCCcceEEEEecC
Q 046555 276 F--WPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDL--KDGVLHYGLQGSANLENVAVLELG 351 (418)
Q Consensus 276 ~--~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~--~~~~l~~~l~~~~~Le~l~vl~l~ 351 (418)
. ...+..+..+||+|-+|+|.|+..-.+ +.......|+.|++|+++-|. .+..+ .-+...|.|..|.+ .
T Consensus 299 nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~---~~~~~~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv---~ 371 (419)
T KOG2120|consen 299 NLQKSHLSTLVRRCPNLVHLDLSDSVMLKN---DCFQEFFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDV---F 371 (419)
T ss_pred hhhhhHHHHHHHhCCceeeeccccccccCc---hHHHHHHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEe---c
Confidence 1 123445568899999999988754322 344456689999999998653 33222 12233444444332 1
Q ss_pred CcccccchHHHHHHHHhcCcccceEE
Q 046555 352 WPVISDLFSHWVEGLLKRCPNLRRLV 377 (418)
Q Consensus 352 ~~~~~d~~~~~l~~ll~~c~~Lk~L~ 377 (418)
.+.+|. .++.+.+.||+|+.=.
T Consensus 372 -g~vsdt---~mel~~e~~~~lkin~ 393 (419)
T KOG2120|consen 372 -GCVSDT---TMELLKEMLSHLKINC 393 (419)
T ss_pred -cccCch---HHHHHHHhCccccccc
Confidence 233442 3456667777766433
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.53 E-value=1.4e-07 Score=104.58 Aligned_cols=239 Identities=17% Similarity=0.132 Sum_probs=141.4
Q ss_pred ccceeEEEEeceEecCCCC--CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcc
Q 046555 125 RQKLEVLALAHNTITGVEP--NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTL 202 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~--~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L 202 (418)
.++|++|+|++|.+.+..| ....+++|+.|+|++..+++..- ....|+|+.|++++|.+...... .+ -..++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~-~~-~~l~~L 166 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPN-DI-GSFSSL 166 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCCh-HH-hcCCCC
Confidence 3789999999998765322 23378889999998876653211 13578899999998765311110 01 123688
Q ss_pred cEEEEEeeccc----eEEEeCCCccEEEeeccceeeE---EEecCCceeEEEecceeEEe-e-ccCCCcCCceeEEeecc
Q 046555 203 KSIYVEAISLD----KFILEADSIERLHLKDCALELF---ELVGRGTLKHFKIDDVSVIH-L-DIGDTVDNLEIVDVSSF 273 (418)
Q Consensus 203 ~~L~l~~~~~~----~~~~~~P~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~~-l-~i~~~~~~L~~l~l~~~ 273 (418)
+.|++++..+. ......++|++|++++|.+... .+-...+|+.+.+....+.. + .....+++|++|+++++
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 88888854322 2233578999999998865321 11233566777665543321 1 01135688999988876
Q ss_pred ccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCc
Q 046555 274 TIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWP 353 (418)
Q Consensus 274 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~ 353 (418)
.... .....+...++|+.|.+.+..+... ...-...+++|++|+++.+...+..+..+.++ ++|+.|++..+
T Consensus 247 ~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~l~~n 318 (968)
T PLN00113 247 NLTG-PIPSSLGNLKNLQYLFLYQNKLSGP----IPPSIFSLQKLISLDLSDNSLSGEIPELVIQL---QNLEILHLFSN 318 (968)
T ss_pred eecc-ccChhHhCCCCCCEEECcCCeeecc----CchhHhhccCcCEEECcCCeeccCCChhHcCC---CCCcEEECCCC
Confidence 5421 1223456678888888765433211 11112346789999998764444433333344 45556666655
Q ss_pred ccccchHHHHHHHHhcCcccceEEEee
Q 046555 354 VISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 354 ~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
.+.+... .-+..+++|+.|.+.+
T Consensus 319 ~~~~~~~----~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 319 NFTGKIP----VALTSLPRLQVLQLWS 341 (968)
T ss_pred ccCCcCC----hhHhcCCCCCEEECcC
Confidence 5443322 2244689999999964
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.50 E-value=5.3e-08 Score=93.62 Aligned_cols=119 Identities=14% Similarity=0.031 Sum_probs=61.0
Q ss_pred cCCceeEEeeccccchHH---HHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccc-eeccccc
Q 046555 262 VDNLEIVDVSSFTIFWPK---FYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDG-VLHYGLQ 337 (418)
Q Consensus 262 ~~~L~~l~l~~~~~~~~~---~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~-~l~~~l~ 337 (418)
.++|+.++++++...+.. +...+...++|+.|.+.+..+.+.....+......+++|++|+++++...+ ....+..
T Consensus 164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~ 243 (319)
T cd00116 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS 243 (319)
T ss_pred CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence 356666666665443321 222344456888888776554422222233334456778888887753221 1111111
Q ss_pred CCC-CcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEee
Q 046555 338 GSA-NLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 338 ~~~-~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
.+. ....|+.+++..+.+++.....+...+..+++|+.+.+.+
T Consensus 244 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 244 ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 110 1235556666666666533233444555667888888853
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.47 E-value=3.4e-07 Score=101.49 Aligned_cols=149 Identities=19% Similarity=0.178 Sum_probs=66.9
Q ss_pred CCCccEEEeeccceeeE---EEecCCceeEEEecceeEEe-e-ccCCCcCCceeEEeeccccchHHHHHhhhcCCCccEE
Q 046555 219 ADSIERLHLKDCALELF---ELVGRGTLKHFKIDDVSVIH-L-DIGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKL 293 (418)
Q Consensus 219 ~P~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~~-l-~i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L 293 (418)
.++|++|++++|.+... .+-+.++|+.+.+....+.. + .-...+++|+.++++++.... .+...+...++|+.|
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L 313 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG-EIPELVIQLQNLEIL 313 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc-CCChhHcCCCCCcEE
Confidence 45666666666543211 11122445555554433211 0 001134566666665543221 112233455666666
Q ss_pred EEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHHHHHHhcCccc
Q 046555 294 RLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNL 373 (418)
Q Consensus 294 ~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~L 373 (418)
++.+..+... .......+++|+.|.++.+...+..+..+.. +.+|+.+++.++.+.+....+ +...++|
T Consensus 314 ~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~---~~~L~~L~Ls~n~l~~~~p~~----~~~~~~L 382 (968)
T PLN00113 314 HLFSNNFTGK----IPVALTSLPRLQVLQLWSNKFSGEIPKNLGK---HNNLTVLDLSTNNLTGEIPEG----LCSSGNL 382 (968)
T ss_pred ECCCCccCCc----CChhHhcCCCCCEEECcCCCCcCcCChHHhC---CCCCcEEECCCCeeEeeCChh----HhCcCCC
Confidence 6544332211 1111234567777777665433333222222 334555666655444322221 2246777
Q ss_pred ceEEEe
Q 046555 374 RRLVIF 379 (418)
Q Consensus 374 k~L~i~ 379 (418)
+.|.+.
T Consensus 383 ~~L~l~ 388 (968)
T PLN00113 383 FKLILF 388 (968)
T ss_pred CEEECc
Confidence 887775
No 7
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.43 E-value=8.8e-08 Score=64.47 Aligned_cols=36 Identities=31% Similarity=0.640 Sum_probs=30.4
Q ss_pred CCCCcHHHHHHHHccCCccceeeecccccchHHHHHc
Q 046555 1 MEQLPVEVIGNILSRLGGARDVVIASATCKKWQEAYR 37 (418)
Q Consensus 1 is~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~ 37 (418)
|+.||+|++.+||++|| .++....++|||+|+++..
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHC
Confidence 68999999999999999 5688888999999999864
No 8
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.37 E-value=7e-08 Score=92.11 Aligned_cols=160 Identities=19% Similarity=0.280 Sum_probs=91.8
Q ss_pred cccccceeEEeeEE-ecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEEEEEee------ccceEEEeC
Q 046555 147 RFPCLKSLSLSYVS-ISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSIYVEAI------SLDKFILEA 219 (418)
Q Consensus 147 ~~p~L~~L~L~~v~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~------~~~~~~~~~ 219 (418)
.+..|+.|..+++. +++..+..+...|++|+.|.+.+|+..++.++..+.-.++.|+.+.+..+ .+..+...|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34444445444442 34444455555555555555555443333444333334444444444422 133445568
Q ss_pred CCccEEEeeccceeeEEEecCCceeEEEecceeEEeecc-CCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEccc
Q 046555 220 DSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDI-GDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDV 298 (418)
Q Consensus 220 P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i-~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 298 (418)
|.|+.|.++.|.. ++|.++.+++- ......|+.++++++....+...+.+..+++||++++.++
T Consensus 372 ~~lr~lslshce~---------------itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 372 PRLRVLSLSHCEL---------------ITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred chhccCChhhhhh---------------hhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 8888888877643 23333333322 2345678888888888888888889999999999999887
Q ss_pred ccCccccccHhHHhhcCCCCceeee
Q 046555 299 VFDEDEVLDLETIGVCFPQLSHLSL 323 (418)
Q Consensus 299 ~~~~~~~~~~~~l~~~fp~L~~L~l 323 (418)
.....+ ..+.+...+|+++...+
T Consensus 437 q~vtk~--~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 437 QDVTKE--AISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhhh--hhHHHHhhCccceehhh
Confidence 544222 13345667788776544
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.28 E-value=3.9e-08 Score=97.40 Aligned_cols=195 Identities=21% Similarity=0.280 Sum_probs=108.2
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecH-HHHHHHHHcCcccceeeecCCccccc-cc-cee------E
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISA-LDLSLLLTACQKIEILELVSPEIAML-DA-QVT------V 195 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~-~~l~~ll~~cp~Le~L~l~~~~~~~~-~~-~~~------~ 195 (418)
.+|..|+|+.|.++..+. .+..+|+|+.|.|..-.+.- +.+. +.+-|.||.|.|.+|+|.-- +| +.. +
T Consensus 197 nsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt--FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l 274 (873)
T KOG4194|consen 197 NSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT--FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL 274 (873)
T ss_pred chheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh--hcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence 588999999998877443 45568899999987654431 1111 34566666666666554221 11 111 1
Q ss_pred Ee--------------cCCcccEEEEEeeccceEEEe----CCCccEEEeeccceeeEE---EecCCceeEEEecceeEE
Q 046555 196 EL--------------TSPTLKSIYVEAISLDKFILE----ADSIERLHLKDCALELFE---LVGRGTLKHFKIDDVSVI 254 (418)
Q Consensus 196 ~i--------------~~~~L~~L~l~~~~~~~~~~~----~P~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~~~~~ 254 (418)
.+ --..|+.|+++...+.++.++ ||+|+.|+++.+.+..+. +.....|+.+.+.+.++.
T Consensus 275 ~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 275 NLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred ecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 10 012344444443345556655 788888888887665432 122345666666666555
Q ss_pred eecc--CCCcCCceeEEeeccccchH--HHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeee
Q 046555 255 HLDI--GDTVDNLEIVDVSSFTIFWP--KFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 255 ~l~i--~~~~~~L~~l~l~~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~ 326 (418)
++.- ...+.+|+.|++++....|. .....+...+.|++|++.+-..... ...-+..+++|++|+|..+
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I----~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI----PKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec----chhhhccCcccceecCCCC
Confidence 4421 23467777777777666552 1223344567777777765322100 1112345677777777644
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.28 E-value=3.8e-07 Score=87.66 Aligned_cols=116 Identities=17% Similarity=0.055 Sum_probs=67.0
Q ss_pred CCceeEEeeccccchH---HHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeeccc-ceecccccC
Q 046555 263 DNLEIVDVSSFTIFWP---KFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKD-GVLHYGLQG 338 (418)
Q Consensus 263 ~~L~~l~l~~~~~~~~---~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~-~~l~~~l~~ 338 (418)
++|+.++++++...+. .+...+..+++|++|++.+..+.+.....+......+++|++|+++.+... .....+...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 6788888877665422 234456677899999987655442111111122234569999999876432 211122222
Q ss_pred CCCcceEEEEecCCcccccchHHHHHHHHh----cCcccceEEEeee
Q 046555 339 SANLENVAVLELGWPVISDLFSHWVEGLLK----RCPNLRRLVIFGV 381 (418)
Q Consensus 339 ~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~----~c~~Lk~L~i~~~ 381 (418)
.+.+++|+.|++..+.+++. .+..+.+ ..+.|+.|.+.+.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~---~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDA---GAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred hcccCCCCEEecCCCcCchH---HHHHHHHHHhccCCCceEEEccCC
Confidence 33345666777776666663 2233333 3589999999753
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.16 E-value=1.1e-05 Score=90.73 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=50.1
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEE-ecHHHHHHHHHcCcccceeeecCCcccccccceeEEe-cCCccc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVS-ISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVEL-TSPTLK 203 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i-~~~~L~ 203 (418)
.+|+.|++.++.+.........+++|+.|+|+++. +.. +.. ++.+|+||.|++.+|.....-. -.+ ..++|+
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~--ip~-ls~l~~Le~L~L~~c~~L~~lp---~si~~L~~L~ 684 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE--IPD-LSMATNLETLKLSDCSSLVELP---SSIQYLNKLE 684 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc--CCc-cccCCcccEEEecCCCCccccc---hhhhccCCCC
Confidence 56666777666554433334566777777776542 111 111 4557777777777643110000 001 124566
Q ss_pred EEEEEee-ccceE--EEeCCCccEEEeeccc
Q 046555 204 SIYVEAI-SLDKF--ILEADSIERLHLKDCA 231 (418)
Q Consensus 204 ~L~l~~~-~~~~~--~~~~P~L~~L~l~~~~ 231 (418)
.|.+.++ .+..+ .+..++|+.|++++|.
T Consensus 685 ~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 685 DLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred EEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 6666643 12211 1245667777777663
No 12
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=4.2e-07 Score=87.38 Aligned_cols=106 Identities=22% Similarity=0.286 Sum_probs=75.4
Q ss_pred cceeEEEEeceEecCC--CCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCccc
Q 046555 126 QKLEVLALAHNTITGV--EPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLK 203 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~--~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~ 203 (418)
|+|+.|+|+.|.+.-. .-....++.||+|.|++|.++-.+++.++..||.||.|.|.+|....-... . .-...+|+
T Consensus 172 p~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~-~~i~~~L~ 249 (505)
T KOG3207|consen 172 PSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-S-TKILQTLQ 249 (505)
T ss_pred ccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-h-hhhhhHHh
Confidence 8999999999966431 112347899999999999999999999999999999999998642111110 0 11245788
Q ss_pred EEEEEeec---cc--eEEEeCCCccEEEeecccee
Q 046555 204 SIYVEAIS---LD--KFILEADSIERLHLKDCALE 233 (418)
Q Consensus 204 ~L~l~~~~---~~--~~~~~~P~L~~L~l~~~~~~ 233 (418)
.|++++.. .. ...-..|+|+.|+++.+.+.
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcc
Confidence 88888542 22 23344788888888887654
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.06 E-value=1.1e-06 Score=87.47 Aligned_cols=145 Identities=23% Similarity=0.335 Sum_probs=93.4
Q ss_pred cceeEEEEeceEecCCC-CCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEec-CCccc
Q 046555 126 QKLEVLALAHNTITGVE-PNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELT-SPTLK 203 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~-~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~-~~~L~ 203 (418)
.++++|+|++|.++++. ..+.++.+|.+|.|+.-+++.-. +..+..-|+||.|+|.+|+|-...+. ... -++|+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~LdLnrN~irive~l---tFqgL~Sl~ 248 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-QRSFKRLPKLESLDLNRNRIRIVEGL---TFQGLPSLQ 248 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccC-HHHhhhcchhhhhhccccceeeehhh---hhcCchhhh
Confidence 78999999999998854 34567778999999887776322 23456789999999998765333222 111 26778
Q ss_pred EEEEEeeccc----eEEEeCCCccEEEeeccceeeE---EEecCCceeEEEecceeEE--eeccCCCcCCceeEEeeccc
Q 046555 204 SIYVEAISLD----KFILEADSIERLHLKDCALELF---ELVGRGTLKHFKIDDVSVI--HLDIGDTVDNLEIVDVSSFT 274 (418)
Q Consensus 204 ~L~l~~~~~~----~~~~~~P~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~--~l~i~~~~~~L~~l~l~~~~ 274 (418)
.|.+...++. .....+.+++.|++..+.+..+ .+.|...|+.+.++-..+. +.+-.+.++.|++|+++...
T Consensus 249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc
Confidence 7777744332 2334567888888877765432 2344556666655544332 33334567888888887654
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.03 E-value=1.4e-06 Score=81.66 Aligned_cols=190 Identities=20% Similarity=0.193 Sum_probs=98.9
Q ss_pred HHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEEEEEeeccceEEEeCCCccEEEeeccceeeEEEecCCce
Q 046555 164 LDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSIYVEAISLDKFILEADSIERLHLKDCALELFELVGRGTL 243 (418)
Q Consensus 164 ~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L 243 (418)
..|..++++|..||.|.|.+|-+--..|. .+ ..-|..+ .....+-+.|.|+.+....|.+...+..
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~-~l---~~al~~l-----~~~kk~~~~~~Lrv~i~~rNrlen~ga~----- 175 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGG-RL---GRALFEL-----AVNKKAASKPKLRVFICGRNRLENGGAT----- 175 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHH-HH---HHHHHHH-----HHHhccCCCcceEEEEeeccccccccHH-----
Confidence 46788899999999999987532111111 00 0111111 1112233467888888777654322110
Q ss_pred eEEEecceeEEee-ccCCCcCCceeEEeeccccc--h-HHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCc
Q 046555 244 KHFKIDDVSVIHL-DIGDTVDNLEIVDVSSFTIF--W-PKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLS 319 (418)
Q Consensus 244 ~~l~l~~~~~~~l-~i~~~~~~L~~l~l~~~~~~--~-~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~ 319 (418)
.+ ...+..+.|+.+.+...+.. + .....-+..|++|+.|+|.|-.|....-+.+......+|+|+
T Consensus 176 -----------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 176 -----------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred -----------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 00 00112233333333322211 1 123345677889999988776665322223333445678899
Q ss_pred eeeeeeecc--cceecc---cccCCCCcceEEEEecCCcccccchHHHHH-HHHhcCcccceEEEeeee
Q 046555 320 HLSLSYDLK--DGVLHY---GLQGSANLENVAVLELGWPVISDLFSHWVE-GLLKRCPNLRRLVIFGVI 382 (418)
Q Consensus 320 ~L~l~~~~~--~~~l~~---~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~-~ll~~c~~Lk~L~i~~~~ 382 (418)
.|.++||.. .|.... +-.. .+.|+++++.++.|+--....+. .+.+ -|.|++|.|.|..
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~---~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~ 309 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKES---APSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNR 309 (382)
T ss_pred eecccccccccccHHHHHHHHhcc---CCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCccc
Confidence 999999843 343321 1222 34667788877665432211122 2333 6899999998654
No 15
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.83 E-value=2.5e-06 Score=57.56 Aligned_cols=36 Identities=31% Similarity=0.554 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHccCCccceeeecccccchHHHHHcc
Q 046555 2 EQLPVEVIGNILSRLGGARDVVIASATCKKWQEAYRK 38 (418)
Q Consensus 2 s~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~~ 38 (418)
++||+|++.+|+++|+ .++.+..+.|||+|+.+...
T Consensus 4 ~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 4 SDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred HHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcC
Confidence 5799999999999999 56788889999999998764
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.76 E-value=4.3e-05 Score=86.09 Aligned_cols=106 Identities=21% Similarity=0.178 Sum_probs=65.0
Q ss_pred ccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 125 RQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
.++|+.|+|+++......|....+++|++|+|.+|..-. .+..-+..+++|+.|++++|.....-. ..+..++|+.
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp---~~i~l~sL~~ 708 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILP---TGINLKSLYR 708 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccC---CcCCCCCCCE
Confidence 478999999887422223445678999999998874211 222335678999999998853211111 1123467888
Q ss_pred EEEEeec-cceEEEeCCCccEEEeeccceee
Q 046555 205 IYVEAIS-LDKFILEADSIERLHLKDCALEL 234 (418)
Q Consensus 205 L~l~~~~-~~~~~~~~P~L~~L~l~~~~~~~ 234 (418)
|.++++. ++.+--..++|++|+++++.+..
T Consensus 709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~ 739 (1153)
T PLN03210 709 LNLSGCSRLKSFPDISTNISWLDLDETAIEE 739 (1153)
T ss_pred EeCCCCCCccccccccCCcCeeecCCCcccc
Confidence 8877542 22222124578888887776543
No 17
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.69 E-value=1e-05 Score=52.36 Aligned_cols=34 Identities=26% Similarity=0.589 Sum_probs=30.2
Q ss_pred CcHHHHHHHHccCCccceeeecccccchHHHHHcc
Q 046555 4 LPVEVIGNILSRLGGARDVVIASATCKKWQEAYRK 38 (418)
Q Consensus 4 LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~~ 38 (418)
||+|++.+|+++|+ .++....+.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999 47888888999999998754
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.63 E-value=7e-05 Score=79.56 Aligned_cols=31 Identities=26% Similarity=0.256 Sum_probs=15.0
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYV 159 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v 159 (418)
++|++|+|++|.++..+. ..++|+.|+|.+.
T Consensus 242 ~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N 272 (788)
T PRK15387 242 PELRTLEVSGNQLTSLPV---LPPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEecCCccCcccC---cccccceeeccCC
Confidence 455666666555544211 1244555555443
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=1.1e-05 Score=77.77 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=74.0
Q ss_pred cceeEEEEeceEecCCC--CCCccccccceeEEeeEEecH-HHHHHHHHcCcccceeeecCCcccccccceeEEecCCcc
Q 046555 126 QKLEVLALAHNTITGVE--PNFQRFPCLKSLSLSYVSISA-LDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTL 202 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~--~~~~~~p~L~~L~L~~v~~~~-~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L 202 (418)
+.|+...|..+.+..+. ..+..||+++.|+|++--|.. ..+..++.-.|+||.|+|+.|....-.+. ...-..+.|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchhhhhhh
Confidence 56777788877655432 246789999999998766654 56778889999999999998764321111 122345778
Q ss_pred cEEEEEeeccc-----eEEEeCCCccEEEeeccc
Q 046555 203 KSIYVEAISLD-----KFILEADSIERLHLKDCA 231 (418)
Q Consensus 203 ~~L~l~~~~~~-----~~~~~~P~L~~L~l~~~~ 231 (418)
+.|.+++|++. .+...+|+|+.|.+.++.
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 88988876433 345568999999998874
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.46 E-value=0.00027 Score=75.26 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=69.1
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++|+.|.+.+|.++..+ ...|+|++|+|++..++. +. ...++|+.|++.+|.+.. +.-...+|+.|
T Consensus 222 ~~L~~L~L~~N~Lt~LP---~lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~L~~------Lp~lp~~L~~L 287 (788)
T PRK15387 222 AHITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNPLTH------LPALPSGLCKL 287 (788)
T ss_pred cCCCEEEccCCcCCCCC---CCCCCCcEEEecCCccCc--cc---CcccccceeeccCCchhh------hhhchhhcCEE
Confidence 56788888887776532 235778888887765542 11 124577777777654321 11112456666
Q ss_pred EEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeecc
Q 046555 206 YVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSF 273 (418)
Q Consensus 206 ~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~ 273 (418)
.+.+..+..+-...|+|+.|++++|.+..+... .++|+.+.+....+..+ +....+|+.|++++.
T Consensus 288 ~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~l-p~~L~~L~Ls~N~L~~L--P~lp~~Lq~LdLS~N 352 (788)
T PRK15387 288 WIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSL--PTLPSGLQELSVSDN 352 (788)
T ss_pred ECcCCccccccccccccceeECCCCccccCCCC-cccccccccccCccccc--cccccccceEecCCC
Confidence 666544433323346788888877765443211 12344444433332211 111235666666554
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.37 E-value=3.2e-05 Score=67.35 Aligned_cols=35 Identities=34% Similarity=0.295 Sum_probs=4.6
Q ss_pred ceeEEEEeceEecCCCCCCccccccceeEEeeEEe
Q 046555 127 KLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSI 161 (418)
Q Consensus 127 ~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~ 161 (418)
.++.|+|.|+.++........+.+|+.|+|++..+
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I 54 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI 54 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCC
Confidence 34444444444443322222344444444444433
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.32 E-value=0.00017 Score=76.76 Aligned_cols=177 Identities=14% Similarity=0.179 Sum_probs=90.9
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++|+.|+|++|.++..+. ..+++|++|+|++..++. +.. ...+.|+.|.+++|.+..-.. .+ ..+|+.|
T Consensus 199 ~~L~~L~Ls~N~LtsLP~--~l~~nL~~L~Ls~N~Lts--LP~--~l~~~L~~L~Ls~N~L~~LP~----~l-~s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNNELKSLPE--NLQGNIKTLYANSNQLTS--IPA--TLPDTIQEMELSINRITELPE----RL-PSALQSL 267 (754)
T ss_pred cCCcEEEecCCCCCcCCh--hhccCCCEEECCCCcccc--CCh--hhhccccEEECcCCccCcCCh----hH-hCCCCEE
Confidence 678888888887765332 234678888888776542 111 113468888888765421100 11 2467777
Q ss_pred EEEeeccceEEEe-CCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhh
Q 046555 206 YVEAISLDKFILE-ADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMI 284 (418)
Q Consensus 206 ~l~~~~~~~~~~~-~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l 284 (418)
.+++..+..+--. .++|+.|++++|.+..+...-.++++.+.+....+..+.. ...++|+.|+++++.... +...+
T Consensus 268 ~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~Lt~--LP~~l 344 (754)
T PRK15370 268 DLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE-TLPPGLKTLEAGENALTS--LPASL 344 (754)
T ss_pred ECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCc-cccccceeccccCCcccc--CChhh
Confidence 7775444332211 3578888888876654321111234444444433222210 123567777666543221 10111
Q ss_pred hcCCCccEEEEcccccCccccccHhHHhhc-CCCCceeeeeee
Q 046555 285 SRSSKLKKLRLWDVVFDEDEVLDLETIGVC-FPQLSHLSLSYD 326 (418)
Q Consensus 285 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~-fp~L~~L~l~~~ 326 (418)
.++|+.|++.+..+. .++.. .++|++|+++++
T Consensus 345 --~~sL~~L~Ls~N~L~--------~LP~~lp~~L~~LdLs~N 377 (754)
T PRK15370 345 --PPELQVLDVSKNQIT--------VLPETLPPTITTLDVSRN 377 (754)
T ss_pred --cCcccEEECCCCCCC--------cCChhhcCCcCEEECCCC
Confidence 246777766543322 11111 146777777665
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.29 E-value=3.7e-05 Score=81.03 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=91.5
Q ss_pred ccccceeEEEEece-EecC--CCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecC
Q 046555 123 CGRQKLEVLALAHN-TITG--VEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTS 199 (418)
Q Consensus 123 ~~~~~L~~L~L~~~-~l~~--~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~ 199 (418)
.+..+|++|+++|. .++. +...+.-||+|++|.+.++.+..+++..+-.++|+|..|+++++.+..-.|... -
T Consensus 119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~----L 194 (699)
T KOG3665|consen 119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISR----L 194 (699)
T ss_pred HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhc----c
Confidence 45589999999987 3433 223567899999999999999888899999999999999999965432222111 1
Q ss_pred CcccEEEEEeeccce-----EEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccc
Q 046555 200 PTLKSIYVEAISLDK-----FILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFT 274 (418)
Q Consensus 200 ~~L~~L~l~~~~~~~-----~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~ 274 (418)
++|+.|.+.+..+.. -.+.-.+|+.||+|........ ++.. ..++.+..+|+|+.||+++-.
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~----------~ii~---qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT----------KIIE---QYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch----------HHHH---HHHHhcccCccccEEecCCcc
Confidence 455555444322221 1233567777777754321000 0000 012345567888888887544
Q ss_pred cchHHHHHhhhcCCCccEEE
Q 046555 275 IFWPKFYQMISRSSKLKKLR 294 (418)
Q Consensus 275 ~~~~~~~~~l~~~~~L~~L~ 294 (418)
.....+-..+..=|+|+...
T Consensus 262 i~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 262 INEEILEELLNSHPNLQQIA 281 (699)
T ss_pred hhHHHHHHHHHhCccHhhhh
Confidence 33322223333334444433
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.24 E-value=0.00018 Score=67.79 Aligned_cols=228 Identities=19% Similarity=0.232 Sum_probs=126.2
Q ss_pred cceeEEEEeceEecC-----CCCCCccccccceeEEeeEEec---HH------HHHHHHHcCcccceeeecCCccccccc
Q 046555 126 QKLEVLALAHNTITG-----VEPNFQRFPCLKSLSLSYVSIS---AL------DLSLLLTACQKIEILELVSPEIAMLDA 191 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~-----~~~~~~~~p~L~~L~L~~v~~~---~~------~l~~ll~~cp~Le~L~l~~~~~~~~~~ 191 (418)
.+++.++|+||.|.. .......-++|+.-+++.+... ++ .|..-+.+||+|+.|+|+.|-+ |
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~----G 105 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF----G 105 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc----C
Confidence 789999999998854 1112233445666666655321 21 3344456899999999987422 1
Q ss_pred ceeEEecCCcccEEEEEeeccceEEEeCCCccEEEeeccceeeEEE--ecCCceeEEEecceeEEeeccCCCcCCceeEE
Q 046555 192 QVTVELTSPTLKSIYVEAISLDKFILEADSIERLHLKDCALELFEL--VGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVD 269 (418)
Q Consensus 192 ~~~~~i~~~~L~~L~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~--~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~ 269 (418)
...++ .+..++-.+..|+.|.+..|.+-...- ++ +.|..+... .-...-+.|+.+.
T Consensus 106 ~~g~~--------------~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~~~-------kk~~~~~~Lrv~i 163 (382)
T KOG1909|consen 106 PKGIR--------------GLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELAVN-------KKAASKPKLRVFI 163 (382)
T ss_pred ccchH--------------HHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHHHH-------hccCCCcceEEEE
Confidence 11110 233344558899999999886421100 00 011111100 1112346777776
Q ss_pred eeccccc--hH-HHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecc--cceecccccCCCCcce
Q 046555 270 VSSFTIF--WP-KFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLK--DGVLHYGLQGSANLEN 344 (418)
Q Consensus 270 l~~~~~~--~~-~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~--~~~l~~~l~~~~~Le~ 344 (418)
....... +. .....+...+.++.+++..-........-+..-+..+|+|+.|++.-++. .|.. +.-...+.+..
T Consensus 164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~-~LakaL~s~~~ 242 (382)
T KOG1909|consen 164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV-ALAKALSSWPH 242 (382)
T ss_pred eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH-HHHHHhcccch
Confidence 6544322 11 12234555678888887543322222212223355788999998876533 2221 22223455667
Q ss_pred EEEEecCCcccccch-HHHHHHHHhcCcccceEEEee
Q 046555 345 VAVLELGWPVISDLF-SHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 345 l~vl~l~~~~~~d~~-~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
|+.+.++++.+.+-- ...+..+-+..|+|+.|.+.|
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~g 279 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAG 279 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCc
Confidence 888888877766532 234556777789999999865
No 25
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=97.20 E-value=0.00036 Score=40.18 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=22.5
Q ss_pred ccceeEEeeEEecHH-HHHHHHHcCc
Q 046555 150 CLKSLSLSYVSISAL-DLSLLLTACQ 174 (418)
Q Consensus 150 ~L~~L~L~~v~~~~~-~l~~ll~~cp 174 (418)
+||+|+|.+|.|.++ .++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999998764 7999999998
No 26
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.18 E-value=8e-05 Score=75.62 Aligned_cols=139 Identities=26% Similarity=0.353 Sum_probs=66.4
Q ss_pred ccccceeEEeeE-EecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEEEEEeeccceEEEeCCCccEEE
Q 046555 148 FPCLKSLSLSYV-SISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSIYVEAISLDKFILEADSIERLH 226 (418)
Q Consensus 148 ~p~L~~L~L~~v-~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~P~L~~L~ 226 (418)
+|.|+.|.+..+ .+++..+..+...||.|++|.+.++.. .. ... + .....+...+++|+.|+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~---~~~-~---------~~~~~~~~~~~~L~~l~ 249 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCL----LI---TLS-P---------LLLLLLLSICRKLKSLD 249 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCccc----cc---ccc-h---------hHhhhhhhhcCCcCccc
Confidence 556666666554 344444555556666666666654200 00 000 0 00011222356777777
Q ss_pred eeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHH-HHHhhhcCCCccEEEEcccccCcccc
Q 046555 227 LKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPK-FYQMISRSSKLKKLRLWDVVFDEDEV 305 (418)
Q Consensus 227 l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~-~~~~l~~~~~L~~L~L~~~~~~~~~~ 305 (418)
++.+.. ++|.++. .+...+++|+.+.+.++....+. +.....++++|+.|++..+....+
T Consensus 250 l~~~~~---------------isd~~l~--~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-- 310 (482)
T KOG1947|consen 250 LSGCGL---------------VTDIGLS--ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-- 310 (482)
T ss_pred hhhhhc---------------cCchhHH--HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH--
Confidence 766541 2222211 12334677777776655533333 334445677777777765543311
Q ss_pred ccHhHHhhcCCCCceee
Q 046555 306 LDLETIGVCFPQLSHLS 322 (418)
Q Consensus 306 ~~~~~l~~~fp~L~~L~ 322 (418)
..+..+...+|+|+.|.
T Consensus 311 ~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 311 SGLEALLKNCPNLRELK 327 (482)
T ss_pred HHHHHHHHhCcchhhhh
Confidence 12333444466655544
No 27
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.17 E-value=2e-05 Score=80.05 Aligned_cols=107 Identities=22% Similarity=0.277 Sum_probs=70.9
Q ss_pred cccceeEEEEece-Ee-cC----CCCCCccccccceeEEeeEE-ecHHHHHHHHHcCcccceeeecCCcccccccceeEE
Q 046555 124 GRQKLEVLALAHN-TI-TG----VEPNFQRFPCLKSLSLSYVS-ISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVE 196 (418)
Q Consensus 124 ~~~~L~~L~L~~~-~l-~~----~~~~~~~~p~L~~L~L~~v~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~ 196 (418)
.|+.|+.|++++| .. .. .......+++|+.|+|.++. ++|.++..+...||+||.|.+.+|.-.++.+...+.
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 3588888888873 21 11 12345667888888888877 888888888888999999887776533344444344
Q ss_pred ecCCcccEEEEEee------ccceEEEeCCCccEEEeecc
Q 046555 197 LTSPTLKSIYVEAI------SLDKFILEADSIERLHLKDC 230 (418)
Q Consensus 197 i~~~~L~~L~l~~~------~~~~~~~~~P~L~~L~l~~~ 230 (418)
-.+++|+.|++..+ ++..+...+|+|+.|.+..+
T Consensus 292 ~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 45677888888844 12233344777777666543
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.98 E-value=0.00037 Score=73.67 Aligned_cols=91 Identities=24% Similarity=0.335 Sum_probs=52.5
Q ss_pred hhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccc---eecccccCCCCcceEEEEecCCcccccch
Q 046555 283 MISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDG---VLHYGLQGSANLENVAVLELGWPVISDLF 359 (418)
Q Consensus 283 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~---~l~~~l~~~~~Le~l~vl~l~~~~~~d~~ 359 (418)
.+++..||+.|.+.++.+.. ..++..++ ...+|+.|++|.+.... .....++.-..|++|+.||+.-+.+++
T Consensus 190 GIS~LknLq~L~mrnLe~e~--~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~-- 264 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRNLEFES--YQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE-- 264 (699)
T ss_pred HHhccccHHHHhccCCCCCc--hhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH--
Confidence 34445566666655554432 12233333 35678888887653221 112223333347788888876444443
Q ss_pred HHHHHHHHhcCcccceEEEe
Q 046555 360 SHWVEGLLKRCPNLRRLVIF 379 (418)
Q Consensus 360 ~~~l~~ll~~c~~Lk~L~i~ 379 (418)
..++.+++..|+|+.+...
T Consensus 265 -~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 265 -EILEELLNSHPNLQQIAAL 283 (699)
T ss_pred -HHHHHHHHhCccHhhhhhh
Confidence 5678888889999888864
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.91 E-value=0.00014 Score=63.31 Aligned_cols=60 Identities=37% Similarity=0.454 Sum_probs=25.7
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCccc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIA 187 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~ 187 (418)
.+|++|+|++|.+.... +...++.|++|.+++-.++.-+ ..+...||+|+.|.+.+|.|.
T Consensus 42 ~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---
T ss_pred cCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCC
Confidence 68999999999887643 4667899999999887776421 233457999999999988764
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.84 E-value=0.00032 Score=49.78 Aligned_cols=59 Identities=24% Similarity=0.433 Sum_probs=40.6
Q ss_pred cceeEEEEeceEecCCC-CCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCc
Q 046555 126 QKLEVLALAHNTITGVE-PNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPE 185 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~-~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~ 185 (418)
|+|++|++++|.+.... ..+.++++|++|++++..+..-. ...+.++|+|+.|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 57888888888776643 24567888888888876554211 1235678889988888753
No 31
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.71 E-value=1.8e-05 Score=79.52 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=86.6
Q ss_pred cceeEEEEeceEecC--CCCCCccccccceeEEeeEEecH--HHHHHHHHcCcccceeeecCCcccccccceeEEecCCc
Q 046555 126 QKLEVLALAHNTITG--VEPNFQRFPCLKSLSLSYVSISA--LDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPT 201 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~--~~~~~~~~p~L~~L~L~~v~~~~--~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~ 201 (418)
|.|+++.+..|++.. +++....+..|+.|+|++..+.. ..+ ....++-.|+|++|.|-+-.. .+.|.-..
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~L----E~AKn~iVLNLS~N~IetIPn--~lfinLtD 151 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNL----EYAKNSIVLNLSYNNIETIPN--SLFINLTD 151 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhh----hhhcCcEEEEcccCccccCCc--hHHHhhHh
Confidence 556666666665533 44444556667777777654432 222 235566677777765532111 12222223
Q ss_pred ccEEEEEeeccc---eEEEeCCCccEEEeeccceeeEEEecCCceeE---EEecceeEEeeccC---CCcCCceeEEeec
Q 046555 202 LKSIYVEAISLD---KFILEADSIERLHLKDCALELFELVGRGTLKH---FKIDDVSVIHLDIG---DTVDNLEIVDVSS 272 (418)
Q Consensus 202 L~~L~l~~~~~~---~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~---l~l~~~~~~~l~i~---~~~~~L~~l~l~~ 272 (418)
|-.|+++...++ .-+....+|+.|+++++.+..|.+...|++.+ +++....-+..+++ +.+.||..++++.
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~ 231 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE 231 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence 444444422111 11112347788888888877666655555443 34433322222232 2567888888876
Q ss_pred cccchHHHHHhhhcCCCccEEEEcccc
Q 046555 273 FTIFWPKFYQMISRSSKLKKLRLWDVV 299 (418)
Q Consensus 273 ~~~~~~~~~~~l~~~~~L~~L~L~~~~ 299 (418)
.... ...+.+-+.++|++|+|.+-.
T Consensus 232 N~Lp--~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 232 NNLP--IVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred cCCC--cchHHHhhhhhhheeccCcCc
Confidence 5532 223334456788888887643
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.63 E-value=0.0012 Score=70.41 Aligned_cols=159 Identities=17% Similarity=0.214 Sum_probs=93.6
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++|+.|++++|.+...+. .-.+.|+.|.|+++.+.. +.. ....+|+.|++++|.+..-.. .+ .++|+.|
T Consensus 220 ~nL~~L~Ls~N~LtsLP~--~l~~~L~~L~Ls~N~L~~--LP~--~l~s~L~~L~Ls~N~L~~LP~----~l-~~sL~~L 288 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPA--TLPDTIQEMELSINRITE--LPE--RLPSALQSLDLFHNKISCLPE----NL-PEELRYL 288 (754)
T ss_pred cCCCEEECCCCccccCCh--hhhccccEEECcCCccCc--CCh--hHhCCCCEEECcCCccCcccc----cc-CCCCcEE
Confidence 589999999998875422 223579999998877652 111 112479999998865532111 11 3578888
Q ss_pred EEEeeccceEEEe-CCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhh
Q 046555 206 YVEAISLDKFILE-ADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMI 284 (418)
Q Consensus 206 ~l~~~~~~~~~~~-~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l 284 (418)
.+++..+..+--. .++|+.|++++|.+..+...-.++|+.+.+....+..+. ..-.++|+.|+++++.... +...+
T Consensus 289 ~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP-~~l~~sL~~L~Ls~N~L~~--LP~~l 365 (754)
T PRK15370 289 SVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLP-ASLPPELQVLDVSKNQITV--LPETL 365 (754)
T ss_pred ECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCC-hhhcCcccEEECCCCCCCc--CChhh
Confidence 8876544432212 247888888888765443222256777776665443322 1123588888888765321 11111
Q ss_pred hcCCCccEEEEccccc
Q 046555 285 SRSSKLKKLRLWDVVF 300 (418)
Q Consensus 285 ~~~~~L~~L~L~~~~~ 300 (418)
.++|+.|++.+..+
T Consensus 366 --p~~L~~LdLs~N~L 379 (754)
T PRK15370 366 --PPTITTLDVSRNAL 379 (754)
T ss_pred --cCCcCEEECCCCcC
Confidence 35788888766443
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.0013 Score=61.00 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=72.3
Q ss_pred ceeEEEEeceEecC---CCCCCccccccceeEEeeEEecH-HHHHHHHHcCcccceeeecCCcccccccceeEEecCCcc
Q 046555 127 KLEVLALAHNTITG---VEPNFQRFPCLKSLSLSYVSISA-LDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTL 202 (418)
Q Consensus 127 ~L~~L~L~~~~l~~---~~~~~~~~p~L~~L~L~~v~~~~-~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L 202 (418)
.++.|.+.+|.+.. ....+..+..++.|+|.+..+++ .++..++...|.|+.|+|+.|..+...+. +-....+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Ccccccce
Confidence 45566666776543 22234566779999999998887 68999999999999999998765433332 22234578
Q ss_pred cEEEEEeecc-----ceEEEeCCCccEEEeeccce
Q 046555 203 KSIYVEAISL-----DKFILEADSIERLHLKDCAL 232 (418)
Q Consensus 203 ~~L~l~~~~~-----~~~~~~~P~L~~L~l~~~~~ 232 (418)
+.|-+.+.++ ....-+.|.++.|+++++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 8888886532 23344579999999988743
No 34
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.80 E-value=0.0016 Score=68.65 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=24.9
Q ss_pred CCcccEEEEEeeccceEEEe----CCCccEEEeeccce
Q 046555 199 SPTLKSIYVEAISLDKFILE----ADSIERLHLKDCAL 232 (418)
Q Consensus 199 ~~~L~~L~l~~~~~~~~~~~----~P~L~~L~l~~~~~ 232 (418)
.+.|+.+++++..+..+.+. .|+|++|+++|+.-
T Consensus 451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 46788888887666554443 38999999999863
No 35
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.51 E-value=0.017 Score=50.81 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=58.0
Q ss_pred cceeEEEEeceEecCCCCC-CccccccceeEEeeEEecH-HHHHHHHHcCcccceeeecCCcccccccceeEEecCCccc
Q 046555 126 QKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISA-LDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLK 203 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~-~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~ 203 (418)
+.|..|.|+.|.++.+.|. ..-+|+|++|.|.+-++-. .++.. +.+||.|+.|.+-++.+..-.+..
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR---------- 132 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYR---------- 132 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCce----------
Confidence 7889999999988876553 4456889999998866543 34555 568999999999886442111110
Q ss_pred EEEEEeeccceEEEeCCCccEEEeecc
Q 046555 204 SIYVEAISLDKFILEADSIERLHLKDC 230 (418)
Q Consensus 204 ~L~l~~~~~~~~~~~~P~L~~L~l~~~ 230 (418)
..++-.-|+|+.||++.-
T Consensus 133 ---------~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 133 ---------LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ---------eEEEEecCcceEeehhhh
Confidence 123345788888888764
No 36
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.42 E-value=0.00057 Score=69.14 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=26.3
Q ss_pred CCccEEEeeccceeeE--EEecCCceeEEEecceeEEeeccC-CCcCCceeEEeeccc
Q 046555 220 DSIERLHLKDCALELF--ELVGRGTLKHFKIDDVSVIHLDIG-DTVDNLEIVDVSSFT 274 (418)
Q Consensus 220 P~L~~L~l~~~~~~~~--~~~~~~~L~~l~l~~~~~~~l~i~-~~~~~L~~l~l~~~~ 274 (418)
.+|..++++.+.+..+ .+...++|+.+.+++..+..++.+ +.-.+|++|+++...
T Consensus 222 ~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 222 HNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch
Confidence 4555555555443222 122334555555555544444333 234567777776544
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.0099 Score=55.27 Aligned_cols=127 Identities=16% Similarity=0.117 Sum_probs=80.7
Q ss_pred CCceEEEEeecCC---CCc-cccccccccceeEEEEeceEecCCC-CCCccccccceeEEeeEEecHHHHHHHHHcCccc
Q 046555 102 ETLRRLYYNVRTT---PNV-NILEICGRQKLEVLALAHNTITGVE-PNFQRFPCLKSLSLSYVSISALDLSLLLTACQKI 176 (418)
Q Consensus 102 ~~l~~L~l~~~~~---~~~-~~~~~~~~~~L~~L~L~~~~l~~~~-~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~L 176 (418)
..|+++++....- ..+ .+++. .|.|++|+|+.|.+..+. .......+|++|-|.+-.++=...+.+++.-|.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~--lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQ--LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhc--CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 5678888731111 111 13332 289999999999886532 1113456788888888777667888899999999
Q ss_pred ceeeecCC---cccccccceeEEecCCcccEEEEEeec------cceEEEeCCCccEEEeeccce
Q 046555 177 EILELVSP---EIAMLDAQVTVELTSPTLKSIYVEAIS------LDKFILEADSIERLHLKDCAL 232 (418)
Q Consensus 177 e~L~l~~~---~~~~~~~~~~~~i~~~~L~~L~l~~~~------~~~~~~~~P~L~~L~l~~~~~ 232 (418)
+.|+++.| ++..++.+ .+-.++.++.++...+. ..++..-.|++.++-+.+|.+
T Consensus 149 telHmS~N~~rq~n~Dd~c--~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~Pl 211 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNC--IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPL 211 (418)
T ss_pred hhhhhccchhhhhcccccc--ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcc
Confidence 99999876 33334333 23345667777666442 122333478888888877754
No 38
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.029 Score=49.32 Aligned_cols=93 Identities=27% Similarity=0.283 Sum_probs=54.5
Q ss_pred HHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchH
Q 046555 281 YQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFS 360 (418)
Q Consensus 281 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~ 360 (418)
++.+...+.++.|.+.++...+|+ -++.+..-+|+|+.|+++.| ..|+|.
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~--~L~~l~~~~~~L~~L~lsgC--------------------------~rIT~~-- 167 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDW--CLERLGGLAPSLQDLDLSGC--------------------------PRITDG-- 167 (221)
T ss_pred HHHHhccchhhhheeccccchhhH--HHHHhcccccchheeeccCC--------------------------Ceechh--
Confidence 344555666666666555433222 23444445566666665543 345552
Q ss_pred HHHHHHHhcCcccceEEEeeeeeecccchhhhhhHHHHHHHHHHhHhcceeEEEE
Q 046555 361 HWVEGLLKRCPNLRRLVIFGVISEIKTHEECLLLAKFTSSIVQLMRKYLHVEVQF 415 (418)
Q Consensus 361 ~~l~~ll~~c~~Lk~L~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 415 (418)
++..|. ..++||+|.|+. -..+.+..-.+.+++-+.|..+|.|
T Consensus 168 -GL~~L~-~lknLr~L~l~~----------l~~v~~~e~~~~~Le~aLP~c~I~~ 210 (221)
T KOG3864|consen 168 -GLACLL-KLKNLRRLHLYD----------LPYVANLELVQRQLEEALPKCDIVG 210 (221)
T ss_pred -HHHHHH-HhhhhHHHHhcC----------chhhhchHHHHHHHHHhCcccceec
Confidence 344443 489999999973 2333445445667778899988876
No 39
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=95.09 E-value=0.0016 Score=68.79 Aligned_cols=101 Identities=25% Similarity=0.271 Sum_probs=62.3
Q ss_pred cceeEEEEeceEecC-CCCCCccccccceeEEeeEEe---cHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCc
Q 046555 126 QKLEVLALAHNTITG-VEPNFQRFPCLKSLSLSYVSI---SALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPT 201 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~-~~~~~~~~p~L~~L~L~~v~~---~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~ 201 (418)
+.|+.|.+.+|.++| ..|...+|++||.|+|++-++ ++. .++..+.||+|.|+||+..+-... ....+.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGNkL~~Lp~t---va~~~~ 431 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGNKLTTLPDT---VANLGR 431 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH----HHhchHHhHHHhcccchhhhhhHH---HHhhhh
Confidence 678888888888888 345678899999999988754 333 355688899999999765321110 011234
Q ss_pred ccEEEEEeeccce--EEEeCCCccEEEeecccee
Q 046555 202 LKSIYVEAISLDK--FILEADSIERLHLKDCALE 233 (418)
Q Consensus 202 L~~L~l~~~~~~~--~~~~~P~L~~L~l~~~~~~ 233 (418)
|+.|..++..+.. -....|.|+.+|++.+.+.
T Consensus 432 L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hHHHhhcCCceeechhhhhcCcceEEecccchhh
Confidence 4444333211110 1123677888888776654
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.06 E-value=0.0051 Score=40.44 Aligned_cols=35 Identities=40% Similarity=0.625 Sum_probs=15.9
Q ss_pred ceeEEEEeceEecCCCCCCccccccceeEEeeEEe
Q 046555 127 KLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSI 161 (418)
Q Consensus 127 ~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~ 161 (418)
+|++|++++|.+.+..+....+++|+.|++++..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 45566666555554332234445555555444433
No 41
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.99 E-value=0.005 Score=56.48 Aligned_cols=64 Identities=19% Similarity=0.160 Sum_probs=34.3
Q ss_pred CCCceeeeeeec-cc-ceecccccCCCCcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEe
Q 046555 316 PQLSHLSLSYDL-KD-GVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIF 379 (418)
Q Consensus 316 p~L~~L~l~~~~-~~-~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~ 379 (418)
.+|+.+.+.++. .+ |.-+....+...+++|++|++.-+..+......+...+...+.|+.|.+.
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 466666666652 22 22222222333345667777654333332233455566677888888886
No 42
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.88 E-value=0.02 Score=55.71 Aligned_cols=36 Identities=22% Similarity=0.443 Sum_probs=32.1
Q ss_pred CCCcHHHHHHHHccCCccceeeecccccchHHHHHc
Q 046555 2 EQLPVEVIGNILSRLGGARDVVIASATCKKWQEAYR 37 (418)
Q Consensus 2 s~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~ 37 (418)
++||+|+|..|..+||..-+.+..++|||.||....
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 679999999999999955589999999999999654
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=93.87 E-value=0.0028 Score=58.79 Aligned_cols=101 Identities=22% Similarity=0.268 Sum_probs=52.6
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
..|+.++|++|.++-......-.|.++.|.+++..+.. ++. ++..|+|..|+|++|..+.++|. ...-.+++.|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~n-La~L~~L~~LDLS~N~Ls~~~Gw---h~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQN-LAELPQLQLLDLSGNLLAECVGW---HLKLGNIKTL 357 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehh-hhhcccceEeecccchhHhhhhh---HhhhcCEeee
Confidence 34667777777665433333445777777777655431 122 44567777777777665544443 2222344555
Q ss_pred EEEeeccceEE--EeCCCccEEEeeccce
Q 046555 206 YVEAISLDKFI--LEADSIERLHLKDCAL 232 (418)
Q Consensus 206 ~l~~~~~~~~~--~~~P~L~~L~l~~~~~ 232 (418)
.+.+..++.+. -..-+|+.|+++++.+
T Consensus 358 ~La~N~iE~LSGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 358 KLAQNKIETLSGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred ehhhhhHhhhhhhHhhhhheeccccccch
Confidence 54432221111 0123566667766654
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=93.50 E-value=0.058 Score=37.95 Aligned_cols=53 Identities=30% Similarity=0.506 Sum_probs=36.7
Q ss_pred CceEEEEe----ecCCCCccccccccccceeEEEEeceEecCCCC-CCccccccceeEEeeE
Q 046555 103 TLRRLYYN----VRTTPNVNILEICGRQKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYV 159 (418)
Q Consensus 103 ~l~~L~l~----~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v 159 (418)
+++.|++. ...++. .+. +.++|++|++++|.+..+.+ .+.++|+|+.|++++.
T Consensus 2 ~L~~L~l~~n~l~~i~~~--~f~--~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPD--SFS--NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTT--TTT--TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHH--HHc--CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 56677772 122332 332 34899999999998876443 4689999999999764
No 45
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.80 E-value=0.004 Score=53.25 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=14.6
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYV 159 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v 159 (418)
++.+.|.|+++.++-++|..+.+.+|+.|.+.+-
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn 66 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN 66 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccc
Confidence 3344444444444443333344444444444433
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=92.32 E-value=0.06 Score=35.29 Aligned_cols=36 Identities=31% Similarity=0.337 Sum_probs=27.8
Q ss_pred cccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 149 PCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 149 p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|++++..+++ +...++.||+|+.|++++|.+
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence 578999999888874 444478999999999999765
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.21 E-value=0.096 Score=48.31 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=79.8
Q ss_pred HHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEEEEEeeccceEEEeCCCccEEEeeccceeeEEE------
Q 046555 164 LDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSIYVEAISLDKFILEADSIERLHLKDCALELFEL------ 237 (418)
Q Consensus 164 ~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~------ 237 (418)
+.+..+++....|+.|.+.+|-. .....-+| ..-|.+| +...-..+.|.|+......+.+...+.
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGl---Gp~aG~ri-gkal~~l-----a~nKKaa~kp~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGL---GPIAGGRI-GKALFHL-----AYNKKAADKPKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCC---CccchhHH-HHHHHHH-----HHHhhhccCCCceEEEeccchhccCcHHHHHHH
Confidence 45677788888888888876421 00000011 0001111 111223457778877776665543321
Q ss_pred -ecCCceeEEEecceeEEe-----ecc-C-CCcCCceeEEeeccccch--HH-HHHhhhcCCCccEEEEcccccCc---c
Q 046555 238 -VGRGTLKHFKIDDVSVIH-----LDI-G-DTVDNLEIVDVSSFTIFW--PK-FYQMISRSSKLKKLRLWDVVFDE---D 303 (418)
Q Consensus 238 -~~~~~L~~l~l~~~~~~~-----l~i-~-~~~~~L~~l~l~~~~~~~--~~-~~~~l~~~~~L~~L~L~~~~~~~---~ 303 (418)
....+++.+++...++.. +.+ + .++++|+.|++...++.. .. +...+..-++|+.|++.+|.... +
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence 112356667766555422 111 1 378999999998765432 11 11222333567888888876541 1
Q ss_pred ccccHhHHh-hcCCCCceeeeeeecc
Q 046555 304 EVLDLETIG-VCFPQLSHLSLSYDLK 328 (418)
Q Consensus 304 ~~~~~~~l~-~~fp~L~~L~l~~~~~ 328 (418)
..++ .+. ..+|||..|-..|+..
T Consensus 261 ~v~~--~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 261 SVLR--RFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHH--HhhhhcCCCccccccchhhh
Confidence 1111 111 2468999998888743
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=91.51 E-value=0.3 Score=45.76 Aligned_cols=232 Identities=14% Similarity=0.115 Sum_probs=106.1
Q ss_pred cceeEEEEeceE--ec------C-CCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEE
Q 046555 126 QKLEVLALAHNT--IT------G-VEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVE 196 (418)
Q Consensus 126 ~~L~~L~L~~~~--l~------~-~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~ 196 (418)
..|..|..++.. |. . ..-....|.+|+++.+++|. .+.+..+...=|.|+++.+++..+......
T Consensus 182 ~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~~~~~~l---- 255 (490)
T KOG1259|consen 182 TQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTIQDVPSL---- 255 (490)
T ss_pred hheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeecccccccccc----
Confidence 578888776531 11 0 11123456777777777663 234445556677777777765222100000
Q ss_pred ecCCcccEEEEEe-ecc-ceEEEeC---CCccEEEeeccceeeEE--EecCCceeEEEecceeEEeeccCCCcCCceeEE
Q 046555 197 LTSPTLKSIYVEA-ISL-DKFILEA---DSIERLHLKDCALELFE--LVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVD 269 (418)
Q Consensus 197 i~~~~L~~L~l~~-~~~-~~~~~~~---P~L~~L~l~~~~~~~~~--~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~ 269 (418)
+.-..+....... ... ..+..++ ..|+.++++++.+..+. +.=.|.++.+.++..++..++--..+++|..|+
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LD 335 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLD 335 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEee
Confidence 0000111110000 000 1122222 36778888877543221 112366666666666655554445778899999
Q ss_pred eeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccc-eecccccCCCCcceEEEE
Q 046555 270 VSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDG-VLHYGLQGSANLENVAVL 348 (418)
Q Consensus 270 l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~-~l~~~l~~~~~Le~l~vl 348 (418)
+++....- +...-.+.-|.++|.|.+-... ++..+ ...-.|..|+++.+..+. .......+.|+||.+..+
T Consensus 336 LS~N~Ls~--~~Gwh~KLGNIKtL~La~N~iE-----~LSGL-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 336 LSGNLLAE--CVGWHLKLGNIKTLKLAQNKIE-----TLSGL-RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred cccchhHh--hhhhHhhhcCEeeeehhhhhHh-----hhhhh-HhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 88765421 1111223457777776432111 11111 122234555555431110 011344566777776543
Q ss_pred ecCCcccccchHHHHHHHHhcCc
Q 046555 349 ELGWPVISDLFSHWVEGLLKRCP 371 (418)
Q Consensus 349 ~l~~~~~~d~~~~~l~~ll~~c~ 371 (418)
+--...+-|+-...++.+-+++.
T Consensus 408 ~NPl~~~vdYRTKVLa~FGERaS 430 (490)
T KOG1259|consen 408 GNPLAGSVDYRTKVLARFGERAS 430 (490)
T ss_pred CCCccccchHHHHHHHHHhhhhh
Confidence 32112233433334444545443
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.72 E-value=0.46 Score=42.05 Aligned_cols=99 Identities=23% Similarity=0.345 Sum_probs=60.6
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecH--HHHHHHHHcCcccceeeecCCcccccccceeEEecCCccc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISA--LDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLK 203 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~--~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~ 203 (418)
.....++|+.|.+... +....+++|.+|.|.+-+|+. .++. ...|+|..|.|.+|.+..-...
T Consensus 42 d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl----------- 106 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDL----------- 106 (233)
T ss_pred cccceecccccchhhc-ccCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhc-----------
Confidence 4556677877765432 235678889999998876653 3443 3578999999988654211111
Q ss_pred EEEEEeeccceEEEeCCCccEEEeecccee------eEEEecCCceeEEEec
Q 046555 204 SIYVEAISLDKFILEADSIERLHLKDCALE------LFELVGRGTLKHFKID 249 (418)
Q Consensus 204 ~L~l~~~~~~~~~~~~P~L~~L~l~~~~~~------~~~~~~~~~L~~l~l~ 249 (418)
. =...||.|++|.+-++... .+.+...|+++.+..+
T Consensus 107 ---------~-pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 107 ---------D-PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ---------c-hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 0 1235888999888887542 2333344666665443
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.33 E-value=0.21 Score=49.57 Aligned_cols=100 Identities=24% Similarity=0.277 Sum_probs=62.7
Q ss_pred cceeEEEEeceEecCCCCCCccc-cccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRF-PCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~-p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
+.++.|.+.++.+++..+....+ ++|+.|++++-.+.. +..-+..+|+|+.|.+.+|++..-.. .....+.|+.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~---~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPK---LLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhh---hhhhhhhhhh
Confidence 56888999888887755544444 389999988765543 11236689999999999876521111 1113566777
Q ss_pred EEEEeeccceEEE--eCCC-ccEEEeecc
Q 046555 205 IYVEAISLDKFIL--EADS-IERLHLKDC 230 (418)
Q Consensus 205 L~l~~~~~~~~~~--~~P~-L~~L~l~~~ 230 (418)
|++++..+..+-- +.++ |++|.++.+
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 7777544443332 2444 777777776
No 51
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=90.33 E-value=0.073 Score=49.83 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=30.5
Q ss_pred CCCCcHHHHHHHHccCC----ccceeeecccccchHHHHHc
Q 046555 1 MEQLPVEVIGNILSRLG----GARDVVIASATCKKWQEAYR 37 (418)
Q Consensus 1 is~LPdelL~~Ils~L~----a~rt~vls~~vcrrWr~lw~ 37 (418)
|+.||||||..||..+= ..|.....++|||.|+...+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 46899999999998643 35788888999999998755
No 52
>PLN03150 hypothetical protein; Provisional
Probab=88.47 E-value=0.29 Score=51.79 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=27.9
Q ss_pred eeEEEEeceEecCC-CCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCc
Q 046555 128 LEVLALAHNTITGV-EPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPE 185 (418)
Q Consensus 128 L~~L~L~~~~l~~~-~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~ 185 (418)
++.|+|+++.+.+. .+....+++|+.|+|++..+.+ .+...+..++.|+.|+|++|.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~ 477 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNS 477 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCC
Confidence 55555555555442 1223445556666665554432 122224455666666665543
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=88.32 E-value=0.13 Score=48.50 Aligned_cols=34 Identities=29% Similarity=0.594 Sum_probs=29.9
Q ss_pred CCCCc----HHHHHHHHccCCccceeeecccccchHHHH
Q 046555 1 MEQLP----VEVIGNILSRLGGARDVVIASATCKKWQEA 35 (418)
Q Consensus 1 is~LP----delL~~Ils~L~a~rt~vls~~vcrrWr~l 35 (418)
|+.|| |++-..|||+|++ .+...+..|||+|+++
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~-~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDA-LSLCACELVCKEWKRV 112 (499)
T ss_pred HHhcccccHHHHHHHHHHhcch-hhhhHHHHHHHHHHHH
Confidence 45799 9999999999994 5788889999999985
No 54
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.71 E-value=0.31 Score=27.76 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=13.8
Q ss_pred ccccceeEEeeEE-ecHHHHHHHH
Q 046555 148 FPCLKSLSLSYVS-ISALDLSLLL 170 (418)
Q Consensus 148 ~p~L~~L~L~~v~-~~~~~l~~ll 170 (418)
||+|+.|+|.+|. ++|.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 4566666666663 6666665543
No 55
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.37 E-value=0.16 Score=44.77 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=34.1
Q ss_pred CCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccC
Q 046555 259 GDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFD 301 (418)
Q Consensus 259 ~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 301 (418)
+...++|+.|+++.|...++.+...+.+++||+.|++.++.++
T Consensus 147 ~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 147 GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred cccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 3356888888888887777778888889999999998876554
No 56
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=85.58 E-value=0.031 Score=47.95 Aligned_cols=57 Identities=25% Similarity=0.419 Sum_probs=39.5
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEE--ecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVS--ISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~--~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
.+|++|++..+++.+.++...++|.|+.|.+.--+ +...++ .++|.||.|++.++..
T Consensus 56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf----gs~p~levldltynnl 114 (264)
T KOG0617|consen 56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF----GSFPALEVLDLTYNNL 114 (264)
T ss_pred hhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc----CCCchhhhhhcccccc
Confidence 67888888888887766666778888888765322 222232 3588899998887644
No 57
>PLN03150 hypothetical protein; Provisional
Probab=84.90 E-value=0.51 Score=49.95 Aligned_cols=61 Identities=26% Similarity=0.390 Sum_probs=48.2
Q ss_pred ccceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 125 RQKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
.++|+.|+|++|.+.+..| ....+++|+.|+|++..+++. +...+..+++|+.|+|++|.+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCcc
Confidence 3799999999999886433 467889999999999877642 223467899999999998654
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=83.26 E-value=1.7 Score=43.22 Aligned_cols=90 Identities=17% Similarity=0.306 Sum_probs=48.3
Q ss_pred cceeEEEEece-EecCCCCCCccccccceeEEeeEE-ecHHHHHHHHHcC-cccceeeecCCcccccccceeEEecCCcc
Q 046555 126 QKLEVLALAHN-TITGVEPNFQRFPCLKSLSLSYVS-ISALDLSLLLTAC-QKIEILELVSPEIAMLDAQVTVELTSPTL 202 (418)
Q Consensus 126 ~~L~~L~L~~~-~l~~~~~~~~~~p~L~~L~L~~v~-~~~~~l~~ll~~c-p~Le~L~l~~~~~~~~~~~~~~~i~~~~L 202 (418)
++|++|.+++| .+... |. .-.++|+.|.+.+|. +. .. +.|+.|.+..+. ...+.--+++|
T Consensus 72 ~sLtsL~Lsnc~nLtsL-P~-~LP~nLe~L~Ls~Cs~L~---------sLP~sLe~L~L~~n~------~~~L~~LPssL 134 (426)
T PRK15386 72 NELTEITIENCNNLTTL-PG-SIPEGLEKLTVCHCPEIS---------GLPESVRSLEIKGSA------TDSIKNVPNGL 134 (426)
T ss_pred CCCcEEEccCCCCcccC-Cc-hhhhhhhheEccCccccc---------ccccccceEEeCCCC------CcccccCcchH
Confidence 56888888876 44321 11 112468888887762 22 22 357888776421 11233335677
Q ss_pred cEEEEEeeccc-eEEEe---CCCccEEEeeccce
Q 046555 203 KSIYVEAISLD-KFILE---ADSIERLHLKDCAL 232 (418)
Q Consensus 203 ~~L~l~~~~~~-~~~~~---~P~L~~L~l~~~~~ 232 (418)
+.|.+.+.... ...+. -++|+.|.+++|..
T Consensus 135 k~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 135 TSLSINSYNPENQARIDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred hheeccccccccccccccccCCcccEEEecCCCc
Confidence 87776432110 00011 25788888887763
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.01 E-value=0.58 Score=42.90 Aligned_cols=90 Identities=28% Similarity=0.211 Sum_probs=47.1
Q ss_pred hcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHHH
Q 046555 285 SRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVE 364 (418)
Q Consensus 285 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~ 364 (418)
.+.|+||+|.+.+-.+. ....++.+...+|+|++|+++-+.... ..-+...+.+++|..|+++++....... -=.
T Consensus 62 P~Lp~LkkL~lsdn~~~--~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~d-yre 136 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRR--VSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDD-YRE 136 (260)
T ss_pred CCcchhhhhcccCCccc--ccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcccccc-HHH
Confidence 34567777766543111 112334455566899998887652211 1234455677888888887654332110 001
Q ss_pred HHHhcCcccceEEEe
Q 046555 365 GLLKRCPNLRRLVIF 379 (418)
Q Consensus 365 ~ll~~c~~Lk~L~i~ 379 (418)
.+.+..|+|+.|.-+
T Consensus 137 ~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDGC 151 (260)
T ss_pred HHHHHhhhhcccccc
Confidence 222335666666654
No 60
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=82.88 E-value=3 Score=30.23 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=40.2
Q ss_pred CcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEeeeeeecccchhhhhhHHHHHHHHHHhHhcceeEEEE
Q 046555 341 NLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFGVISEIKTHEECLLLAKFTSSIVQLMRKYLHVEVQF 415 (418)
Q Consensus 341 ~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 415 (418)
+|+.+++.+.+ +..+. ...+.+++++++.||+++|....... +.. ......+..+.+++++.++.|
T Consensus 6 ~Lk~v~i~~f~--g~~~e-~~~~~~il~~a~~Lk~~~i~~~~~~~----~~~--~~i~~~L~~~~~aS~~c~i~~ 71 (72)
T smart00579 6 SLEVLEIKGYR--GTEEE-KELVKYFLENAPCLKKLTISVETSDD----DEK--LEILKELLSLPRASSSCQVQF 71 (72)
T ss_pred eEEEEEEEecc--CcHHH-HHHHHHHHhcchhheEEEEEeecCCc----cHH--HHHHHHHHhCcCCCCceEEEe
Confidence 35666654432 22221 25678999999999999997432211 111 122345667788899988877
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=79.83 E-value=0.045 Score=56.90 Aligned_cols=52 Identities=25% Similarity=0.343 Sum_probs=30.2
Q ss_pred EEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCC
Q 046555 130 VLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSP 184 (418)
Q Consensus 130 ~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~ 184 (418)
+.+.++|.+.-+.....-+|.|+.|+|++..|.+-+ .+..||.|+.|+|++|
T Consensus 168 ~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 168 TASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYN 219 (1096)
T ss_pred hhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccc
Confidence 334444444332222344577777777777665433 4667788888887774
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=79.50 E-value=0.64 Score=42.63 Aligned_cols=60 Identities=28% Similarity=0.402 Sum_probs=41.2
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecH-HHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISA-LDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~-~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
..|+.|+..++.++... ....+|+||+|.++.-.+.. .++..++..||+|++|++++|.+
T Consensus 43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 45666666666555421 24456789999997663332 36777788899999999998755
No 63
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.97 E-value=1.2 Score=24.58 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=9.2
Q ss_pred cccceeEEeeEEecHHHHHH
Q 046555 149 PCLKSLSLSYVSISALDLSL 168 (418)
Q Consensus 149 p~L~~L~L~~v~~~~~~l~~ 168 (418)
++|++|+|+++.+++++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 44555555555555544443
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=78.68 E-value=0.94 Score=44.83 Aligned_cols=58 Identities=31% Similarity=0.501 Sum_probs=43.8
Q ss_pred ceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 127 KLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 127 ~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
+|+.|+++++.+.........+|.|+.|.+....+.+ +.......+.|+.|.++++.+
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCcc
Confidence 7999999999876643346788999999998876653 333333789999999998765
No 65
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=76.93 E-value=0.23 Score=48.15 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=10.6
Q ss_pred HhhcCCCCceeeeeee
Q 046555 311 IGVCFPQLSHLSLSYD 326 (418)
Q Consensus 311 l~~~fp~L~~L~l~~~ 326 (418)
++....+|+.|+|+.+
T Consensus 317 ~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 317 MFQGLSGLKTLSLYDN 332 (498)
T ss_pred hhhccccceeeeecCC
Confidence 4555667888877654
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=74.49 E-value=7.6 Score=38.67 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=46.3
Q ss_pred cceeEEEEece-EecCCCCCCccccccceeEEeeEEecHHHHHHHHHcC-cccceeeecCCcccccccceeEEecCCccc
Q 046555 126 QKLEVLALAHN-TITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTAC-QKIEILELVSPEIAMLDAQVTVELTSPTLK 203 (418)
Q Consensus 126 ~~L~~L~L~~~-~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~c-p~Le~L~l~~~~~~~~~~~~~~~i~~~~L~ 203 (418)
++|+.|++++| .+... | +.|+.|.+.+.... . +... +.|+.|.+.++........ -..-+++|+
T Consensus 94 ~nLe~L~Ls~Cs~L~sL-P-----~sLe~L~L~~n~~~-----~-L~~LPssLk~L~I~~~n~~~~~~l--p~~LPsSLk 159 (426)
T PRK15386 94 EGLEKLTVCHCPEISGL-P-----ESVRSLEIKGSATD-----S-IKNVPNGLTSLSINSYNPENQARI--DNLISPSLK 159 (426)
T ss_pred hhhhheEccCccccccc-c-----cccceEEeCCCCCc-----c-cccCcchHhheecccccccccccc--ccccCCccc
Confidence 68888888887 44322 1 34777776532211 1 2223 3577787753211000000 012356888
Q ss_pred EEEEEeeccceEEEe-CCCccEEEeeccc
Q 046555 204 SIYVEAISLDKFILE-ADSIERLHLKDCA 231 (418)
Q Consensus 204 ~L~l~~~~~~~~~~~-~P~L~~L~l~~~~ 231 (418)
.|.+.++....+--. -++|+.|+++.+.
T Consensus 160 ~L~Is~c~~i~LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 160 TLSLTGCSNIILPEKLPESLQSITLHIEQ 188 (426)
T ss_pred EEEecCCCcccCcccccccCcEEEecccc
Confidence 888875432111111 2478888876543
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=72.38 E-value=2 Score=23.24 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=11.4
Q ss_pred ceeEEEEeceEecC
Q 046555 127 KLEVLALAHNTITG 140 (418)
Q Consensus 127 ~L~~L~L~~~~l~~ 140 (418)
+|++|+|++|.++.
T Consensus 1 ~L~~Ldls~n~l~~ 14 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS 14 (22)
T ss_dssp TESEEEETSSEESE
T ss_pred CccEEECCCCcCEe
Confidence 58889999998864
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.37 E-value=0.35 Score=44.92 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=19.2
Q ss_pred ccEEEEEeeccceEE--EeCCCccEEEeecccee
Q 046555 202 LKSIYVEAISLDKFI--LEADSIERLHLKDCALE 233 (418)
Q Consensus 202 L~~L~l~~~~~~~~~--~~~P~L~~L~l~~~~~~ 233 (418)
.+.|+..++++..+. -..|.||.|.++-|.+.
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIs 54 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKIS 54 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccc
Confidence 355555555555433 34788888888766543
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=72.10 E-value=2.8 Score=21.20 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=8.8
Q ss_pred CCccEEEeecccee
Q 046555 220 DSIERLHLKDCALE 233 (418)
Q Consensus 220 P~L~~L~l~~~~~~ 233 (418)
|+|+.|++++|.+.
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 57888898888653
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=69.81 E-value=0.91 Score=45.42 Aligned_cols=99 Identities=23% Similarity=0.245 Sum_probs=53.2
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecH-HHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISA-LDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~-~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
.+|+.|++..+.+.........+++|+.|+|++-.|++ .++ +.++.|+.|.+.+|.+..-.++.. .+.|+.
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~~~~----l~~L~~ 166 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISGLES----LKSLKL 166 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccccch----hhccchhhheeccCcchhccCCcc----chhhhc
Confidence 67777777777766543324567777777777766553 233 234457777777776543333321 234444
Q ss_pred EEEEeeccceEE----EeCCCccEEEeeccce
Q 046555 205 IYVEAISLDKFI----LEADSIERLHLKDCAL 232 (418)
Q Consensus 205 L~l~~~~~~~~~----~~~P~L~~L~l~~~~~ 232 (418)
+++....+..+. -..++++.+.+.++..
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 444432211111 2245666666665543
No 71
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=69.33 E-value=0.29 Score=51.18 Aligned_cols=99 Identities=28% Similarity=0.431 Sum_probs=59.8
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecH-HHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISA-LDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~-~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
+.|+.|+|++|.+.++. ....+|.||.|+|+...+.. ..+. -.+|. |+.|.+++|...+-.|...+ .+|..
T Consensus 187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc~-L~~L~lrnN~l~tL~gie~L----ksL~~ 258 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLS--MVGCK-LQLLNLRNNALTTLRGIENL----KSLYG 258 (1096)
T ss_pred HHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccc--hhhhh-heeeeecccHHHhhhhHHhh----hhhhc
Confidence 67899999999998865 45778999999998754331 1121 24676 99999998755443443221 34555
Q ss_pred EEEEee---ccceEE--EeCCCccEEEeeccce
Q 046555 205 IYVEAI---SLDKFI--LEADSIERLHLKDCAL 232 (418)
Q Consensus 205 L~l~~~---~~~~~~--~~~P~L~~L~l~~~~~ 232 (418)
|+++.. +...+. -.-..|..|.+.||.+
T Consensus 259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 555521 000000 0124677777877643
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.62 E-value=1.2 Score=41.51 Aligned_cols=58 Identities=34% Similarity=0.363 Sum_probs=42.4
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCC
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSP 184 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~ 184 (418)
+.|++|.|+-|.++...+ ...|.+|++|.|....|.+-+=-.-+.+.|+|..|.|..|
T Consensus 41 p~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred ccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 778888888887776544 6788888888888777765332233668888888888764
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=67.24 E-value=1.4 Score=45.50 Aligned_cols=34 Identities=32% Similarity=0.645 Sum_probs=31.5
Q ss_pred CCCCcHHHHHHHHccCCccceeeecccccchHHHH
Q 046555 1 MEQLPVEVIGNILSRLGGARDVVIASATCKKWQEA 35 (418)
Q Consensus 1 is~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~l 35 (418)
|+.||-|+-.+|+++|+ .|+.+.+++||+.|+.+
T Consensus 108 i~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKL 141 (537)
T ss_pred hhcccchhcccccccCC-HHHhhhhhhhcchhhhh
Confidence 57899999999999999 59999999999999997
No 74
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=66.81 E-value=3.1 Score=40.72 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=44.3
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCccc
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIA 187 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~ 187 (418)
++|++|+|++|.++.+.+ .+.+...+++|.|..-.+.. .=..++.+-..|+.|+|.+|+|.
T Consensus 274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCeeE
Confidence 789999999998887544 35677778888887654421 11345667888999999987764
No 75
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=65.78 E-value=0.64 Score=46.55 Aligned_cols=103 Identities=21% Similarity=0.269 Sum_probs=59.8
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
..++.+.+..+.+.........|.+|+.|.+..-.+.. +..+++.|++|+.|+++++.|..-.+...+ +.|+.|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l----~~L~~L 145 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLSTL----TLLKEL 145 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhh--cccchhhhhcchheeccccccccccchhhc----cchhhh
Confidence 45556666655543312224567778888876655432 223367899999999999877433333221 236777
Q ss_pred EEEeeccceEEE-e-CCCccEEEeeccceee
Q 046555 206 YVEAISLDKFIL-E-ADSIERLHLKDCALEL 234 (418)
Q Consensus 206 ~l~~~~~~~~~~-~-~P~L~~L~l~~~~~~~ 234 (418)
.+.+..+..+.- . .++|+.++++++.+..
T Consensus 146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 146 NLSGNLISDISGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred eeccCcchhccCCccchhhhcccCCcchhhh
Confidence 776543322221 1 5677777777765543
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=59.73 E-value=2.4 Score=35.38 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=43.3
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
..|...+|++|.|.+.++ ....||-+++|+|.+-.+++-.-+ ++..|.|+.|++++|.+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPL 112 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcc
Confidence 567777888888776433 356678899999988777653333 77889999999988643
No 77
>PF13013 F-box-like_2: F-box-like domain
Probab=59.60 E-value=2.9 Score=33.26 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHccCC
Q 046555 1 MEQLPVEVIGNILSRLG 17 (418)
Q Consensus 1 is~LPdelL~~Ils~L~ 17 (418)
+.+||+||+..|+.+-.
T Consensus 22 l~DLP~ELl~~I~~~C~ 38 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCN 38 (109)
T ss_pred hhhChHHHHHHHHhhcC
Confidence 46799999999999887
No 78
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=54.56 E-value=12 Score=25.17 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=16.6
Q ss_pred HHHHHHHhcCcccceEEEe
Q 046555 361 HWVEGLLKRCPNLRRLVIF 379 (418)
Q Consensus 361 ~~l~~ll~~c~~Lk~L~i~ 379 (418)
..+.+++++++.||+++|.
T Consensus 32 ~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 32 EFAKYILENAPVLKKMTIS 50 (51)
T ss_pred HHHHHHHhhhhhhcEEEEE
Confidence 5678999999999999984
No 79
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=39.44 E-value=7.5 Score=38.26 Aligned_cols=37 Identities=27% Similarity=0.429 Sum_probs=22.0
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEec
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSIS 162 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~ 162 (418)
++|..|+|++|-+.+.+....+.-.|++|+++.-+|.
T Consensus 435 ~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred hcceeeecccchhhhcchhhhhhhhhheecccccccc
Confidence 5667777776655554334455555777776665553
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=38.60 E-value=23 Score=20.34 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=10.0
Q ss_pred ccceeEEeeEEecHHHHHH
Q 046555 150 CLKSLSLSYVSISALDLSL 168 (418)
Q Consensus 150 ~L~~L~L~~v~~~~~~l~~ 168 (418)
+|++|+|++..+.+++...
T Consensus 3 ~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 3 SLRELDLSNNKLGDEGARA 21 (28)
T ss_pred ccCEEECCCCCCCHHHHHH
Confidence 4555565555555544433
No 81
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=28.45 E-value=25 Score=38.87 Aligned_cols=12 Identities=42% Similarity=0.442 Sum_probs=8.0
Q ss_pred CCCCceeeeeee
Q 046555 315 FPQLSHLSLSYD 326 (418)
Q Consensus 315 fp~L~~L~l~~~ 326 (418)
.|+|++|++.++
T Consensus 769 ~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 769 APHLTSLSLVSC 780 (889)
T ss_pred cCcccEEEEecc
Confidence 467777777654
No 82
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=26.95 E-value=36 Score=37.71 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=23.0
Q ss_pred CCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEccc
Q 046555 259 GDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDV 298 (418)
Q Consensus 259 ~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 298 (418)
...+|.|..|+++++.. ...+...|+..-+|+.|++.+.
T Consensus 567 f~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred HhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCC
Confidence 44677788888875322 2233344566667777776543
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=25.91 E-value=29 Score=19.20 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=12.1
Q ss_pred cceeEEEEeceEecCC
Q 046555 126 QKLEVLALAHNTITGV 141 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~ 141 (418)
++|+.|+|++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4688888888877654
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=25.91 E-value=29 Score=19.20 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=12.1
Q ss_pred cceeEEEEeceEecCC
Q 046555 126 QKLEVLALAHNTITGV 141 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~ 141 (418)
++|+.|+|++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4688888888877654
No 85
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=22.44 E-value=46 Score=21.16 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHccCCccceeeecccccchHHHHHc
Q 046555 2 EQLPVEVIGNILSRLGGARDVVIASATCKKWQEAYR 37 (418)
Q Consensus 2 s~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~ 37 (418)
+.|.+.+|.+|...|- + .|+++|.
T Consensus 14 ~ql~ESLLdrItRklr---~---------gwKRl~~ 37 (45)
T PF02061_consen 14 PQLSESLLDRITRKLR---D---------GWKRLWD 37 (45)
T ss_pred chhhHHHHHHHHHHHH---H---------HHHHHHH
Confidence 3566889999988865 2 7999885
No 86
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=20.05 E-value=1.2e+02 Score=21.44 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=21.6
Q ss_pred ceeEEeeEEecHHHHHHHH-----HcCcccceeee
Q 046555 152 KSLSLSYVSISALDLSLLL-----TACQKIEILEL 181 (418)
Q Consensus 152 ~~L~L~~v~~~~~~l~~ll-----~~cp~Le~L~l 181 (418)
+.+.+....++..++..++ .+.|+||.|.+
T Consensus 35 ~~i~l~~~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 35 KKIELWNSKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 4666666778887877776 36888888765
Done!