Query 046555
Match_columns 418
No_of_seqs 189 out of 1404
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 23:30:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.8 1.5E-21 5E-26 202.1 5.5 70 1-82 6-75 (594)
2 3ogk_B Coronatine-insensitive 99.8 1.2E-21 4.1E-26 202.7 3.6 361 2-379 14-444 (592)
3 2ast_B S-phase kinase-associat 99.7 7.2E-19 2.5E-23 169.0 6.8 36 1-37 9-44 (336)
4 3ogk_B Coronatine-insensitive 99.2 3.7E-11 1.3E-15 123.9 11.3 296 66-380 105-472 (592)
5 4fmz_A Internalin; leucine ric 99.2 6.1E-11 2.1E-15 114.0 8.9 231 125-380 87-320 (347)
6 2p1m_B Transport inhibitor res 99.1 1.2E-11 4.1E-16 127.5 3.7 106 125-230 104-221 (594)
7 4fmz_A Internalin; leucine ric 99.1 7.8E-11 2.7E-15 113.2 8.7 250 102-381 44-297 (347)
8 1o6v_A Internalin A; bacterial 99.1 1.8E-10 6.2E-15 115.5 8.6 232 125-380 89-340 (466)
9 1o6v_A Internalin A; bacterial 99.0 2.2E-10 7.5E-15 114.9 7.3 249 102-380 90-362 (466)
10 1z7x_W Ribonuclease inhibitor; 99.0 6.7E-12 2.3E-16 125.4 -4.0 251 126-380 28-322 (461)
11 3o6n_A APL1; leucine-rich repe 99.0 3.6E-10 1.2E-14 110.5 8.0 104 126-232 93-198 (390)
12 3o6n_A APL1; leucine-rich repe 99.0 5.4E-10 1.9E-14 109.2 9.2 232 125-380 116-348 (390)
13 3oja_B Anopheles plasmodium-re 99.0 8.6E-10 3E-14 114.1 8.4 59 126-185 99-158 (597)
14 2id5_A Lingo-1, leucine rich r 98.9 9.5E-10 3.3E-14 110.4 7.8 260 102-380 56-329 (477)
15 3v47_A TOLL-like receptor 5B a 98.9 5.1E-10 1.8E-14 111.5 5.2 109 260-380 296-404 (455)
16 3t6q_A CD180 antigen; protein- 98.9 3.1E-10 1E-14 117.4 3.4 171 125-298 277-459 (606)
17 2z63_A TOLL-like receptor 4, v 98.9 1.2E-08 4E-13 104.5 14.9 236 125-380 281-527 (570)
18 3o53_A Protein LRIM1, AGAP0063 98.9 2.8E-10 9.7E-15 108.2 2.4 229 126-379 34-270 (317)
19 4fcg_A Uncharacterized protein 98.9 5.2E-09 1.8E-13 100.0 11.0 225 102-379 81-309 (328)
20 3oja_B Anopheles plasmodium-re 98.9 1.8E-09 6.2E-14 111.7 8.1 232 125-380 122-354 (597)
21 2id5_A Lingo-1, leucine rich r 98.9 2.7E-09 9.3E-14 107.1 9.0 238 102-354 80-331 (477)
22 1z7x_W Ribonuclease inhibitor; 98.9 2.9E-11 9.9E-16 120.7 -5.5 273 102-380 28-350 (461)
23 3t6q_A CD180 antigen; protein- 98.9 4.8E-10 1.6E-14 116.0 3.0 192 127-326 255-459 (606)
24 3oja_A Leucine-rich immune mol 98.9 9.7E-10 3.3E-14 110.9 5.0 228 126-378 34-269 (487)
25 3rgz_A Protein brassinosteroid 98.9 1.2E-09 4.2E-14 116.3 5.7 124 102-232 100-235 (768)
26 3vq2_A TLR4, TOLL-like recepto 98.9 3.3E-09 1.1E-13 109.7 8.4 150 219-380 398-554 (606)
27 2ast_B S-phase kinase-associat 98.9 1.1E-10 3.7E-15 111.6 -2.9 218 126-374 70-299 (336)
28 3vq2_A TLR4, TOLL-like recepto 98.8 9.1E-09 3.1E-13 106.3 10.3 236 125-380 284-530 (606)
29 3bz5_A Internalin-J, INLJ; leu 98.8 3.1E-09 1.1E-13 106.3 6.4 157 126-299 85-244 (457)
30 2ca6_A RAN GTPase-activating p 98.8 1.9E-10 6.6E-15 112.3 -2.4 40 147-186 92-134 (386)
31 3bz5_A Internalin-J, INLJ; leu 98.8 4.4E-09 1.5E-13 105.2 7.4 241 102-381 42-296 (457)
32 2ca6_A RAN GTPase-activating p 98.8 2.3E-10 7.7E-15 111.9 -2.2 238 125-380 31-312 (386)
33 3goz_A Leucine-rich repeat-con 98.8 4.9E-10 1.7E-14 108.6 -0.0 96 263-358 196-299 (362)
34 4fcg_A Uncharacterized protein 98.8 3.3E-09 1.1E-13 101.4 5.7 206 126-380 81-286 (328)
35 2z80_A TOLL-like receptor 2, v 98.8 1.5E-09 5.2E-14 104.6 2.9 173 102-300 52-234 (353)
36 2z66_A Variable lymphocyte rec 98.8 5.2E-09 1.8E-13 98.6 6.5 104 126-232 28-138 (306)
37 3v47_A TOLL-like receptor 5B a 98.8 2.4E-09 8.3E-14 106.6 4.4 126 102-233 30-167 (455)
38 3rgz_A Protein brassinosteroid 98.8 4.3E-09 1.5E-13 112.1 6.3 60 126-186 269-330 (768)
39 3g06_A SSPH2 (leucine-rich rep 98.8 1.2E-08 4.2E-13 105.7 8.9 213 126-380 81-293 (622)
40 3goz_A Leucine-rich repeat-con 98.7 3.5E-09 1.2E-13 102.5 3.8 232 126-377 22-287 (362)
41 3o53_A Protein LRIM1, AGAP0063 98.7 3.4E-08 1.1E-12 93.7 10.2 214 145-380 30-246 (317)
42 2z81_A CD282 antigen, TOLL-lik 98.7 7.6E-08 2.6E-12 98.1 12.6 64 314-379 332-395 (549)
43 3g06_A SSPH2 (leucine-rich rep 98.7 3.2E-08 1.1E-12 102.6 9.6 205 126-364 101-305 (622)
44 3zyi_A Leucine-rich repeat-con 98.7 1.3E-08 4.5E-13 101.5 6.5 193 126-326 75-276 (452)
45 1xku_A Decorin; proteoglycan, 98.7 1.4E-08 4.9E-13 96.7 6.4 216 126-357 52-277 (330)
46 3zyj_A Leucine-rich repeat-con 98.7 1.8E-08 6.1E-13 100.1 6.7 193 126-326 64-265 (440)
47 1h6u_A Internalin H; cell adhe 98.7 1.6E-08 5.3E-13 95.7 5.4 182 102-326 41-227 (308)
48 2z80_A TOLL-like receptor 2, v 98.6 3.8E-08 1.3E-12 94.7 7.7 200 102-326 76-287 (353)
49 2z63_A TOLL-like receptor 4, v 98.6 2.5E-08 8.7E-13 102.0 6.5 217 127-355 305-530 (570)
50 2z7x_B TOLL-like receptor 1, v 98.6 2.7E-08 9.3E-13 100.8 6.3 92 261-355 188-288 (520)
51 3j0a_A TOLL-like receptor 5; m 98.6 3.1E-08 1.1E-12 106.6 6.5 166 126-298 266-436 (844)
52 2z7x_B TOLL-like receptor 1, v 98.6 1.9E-07 6.4E-12 94.6 11.7 62 125-186 189-259 (520)
53 1ogq_A PGIP-2, polygalacturona 98.6 8.2E-08 2.8E-12 90.9 8.3 60 126-186 76-137 (313)
54 1ogq_A PGIP-2, polygalacturona 98.6 1.6E-08 5.4E-13 95.9 3.1 217 126-356 50-281 (313)
55 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 8.3E-08 2.8E-12 98.4 8.7 223 126-354 76-316 (562)
56 4eco_A Uncharacterized protein 98.6 1E-07 3.6E-12 99.2 9.4 107 125-233 248-366 (636)
57 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 1.4E-07 4.8E-12 96.7 9.9 58 126-185 100-157 (562)
58 3oja_A Leucine-rich immune mol 98.6 5.9E-08 2E-12 97.8 6.7 214 145-380 30-246 (487)
59 3j0a_A TOLL-like receptor 5; m 98.6 1.3E-08 4.4E-13 109.6 1.7 105 125-233 289-394 (844)
60 1ziw_A TOLL-like receptor 3; i 98.5 7.5E-08 2.6E-12 100.9 6.8 57 126-183 248-305 (680)
61 1xku_A Decorin; proteoglycan, 98.5 1.4E-07 4.7E-12 89.8 7.7 224 126-379 100-327 (330)
62 2ra8_A Uncharacterized protein 98.5 1.7E-07 5.9E-12 90.5 7.8 59 126-184 107-182 (362)
63 1ozn_A Reticulon 4 receptor; N 98.5 2.7E-08 9.1E-13 92.8 1.9 58 126-184 32-90 (285)
64 2z81_A CD282 antigen, TOLL-lik 98.5 6.7E-08 2.3E-12 98.5 5.0 150 126-298 50-206 (549)
65 1ziw_A TOLL-like receptor 3; i 98.5 2.1E-07 7E-12 97.5 8.8 171 126-297 171-362 (680)
66 4ecn_A Leucine-rich repeat pro 98.5 1.7E-07 5.9E-12 100.5 8.1 248 125-380 447-737 (876)
67 1wwl_A Monocyte differentiatio 98.5 2.5E-07 8.4E-12 87.5 8.2 204 125-380 94-305 (312)
68 2z62_A TOLL-like receptor 4, v 98.5 6.6E-08 2.3E-12 89.6 4.0 60 126-186 28-88 (276)
69 4ecn_A Leucine-rich repeat pro 98.5 4.1E-08 1.4E-12 105.3 2.8 100 264-380 729-836 (876)
70 4glp_A Monocyte differentiatio 98.5 8.7E-08 3E-12 90.5 4.6 203 126-380 91-303 (310)
71 3zyj_A Leucine-rich repeat-con 98.4 1.9E-07 6.6E-12 92.6 6.8 234 127-380 44-288 (440)
72 3e4g_A ATP synthase subunit S, 98.4 3.7E-07 1.3E-11 78.4 7.6 111 264-417 62-175 (176)
73 3zyi_A Leucine-rich repeat-con 98.4 2.1E-07 7.1E-12 92.7 6.7 234 127-380 55-299 (452)
74 1fs1_A SKP2 F-BOX, cyclin A/CD 98.4 6.1E-08 2.1E-12 66.1 2.0 36 1-37 9-44 (53)
75 2ft3_A Biglycan; proteoglycan, 98.4 4.1E-08 1.4E-12 93.6 1.5 101 126-232 54-159 (332)
76 1h6u_A Internalin H; cell adhe 98.4 8.5E-08 2.9E-12 90.6 3.4 164 102-299 63-228 (308)
77 1h6t_A Internalin B; cell adhe 98.4 2.6E-07 8.9E-12 86.5 6.4 143 126-326 68-210 (291)
78 4eco_A Uncharacterized protein 98.4 5E-08 1.7E-12 101.6 1.6 250 125-380 205-497 (636)
79 2ft3_A Biglycan; proteoglycan, 98.4 5.7E-08 1.9E-12 92.7 1.4 150 221-380 173-329 (332)
80 3rfs_A Internalin B, repeat mo 98.4 6.4E-08 2.2E-12 89.7 0.8 59 126-186 63-121 (272)
81 2z66_A Variable lymphocyte rec 98.4 4.4E-07 1.5E-11 85.3 6.5 238 129-380 10-257 (306)
82 4ezg_A Putative uncharacterize 98.3 1.9E-07 6.4E-12 82.1 2.6 35 261-298 157-191 (197)
83 1m9s_A Internalin B; cell inva 98.3 2.6E-07 8.8E-12 95.5 4.0 143 126-326 65-207 (605)
84 1ozn_A Reticulon 4 receptor; N 98.3 1.7E-07 5.9E-12 87.2 2.4 173 126-326 56-235 (285)
85 1jl5_A Outer protein YOPM; leu 98.3 8.9E-07 3E-11 88.3 6.7 30 343-380 337-366 (454)
86 2xwt_C Thyrotropin receptor; s 98.2 1.1E-06 3.8E-11 79.5 5.4 57 126-183 31-89 (239)
87 1jl5_A Outer protein YOPM; leu 98.2 1.2E-06 4.1E-11 87.4 5.4 55 126-186 173-227 (454)
88 1xeu_A Internalin C; cellular 98.2 6.2E-07 2.1E-11 82.7 3.0 140 126-298 41-182 (263)
89 2o6q_A Variable lymphocyte rec 98.2 3.2E-07 1.1E-11 84.8 0.9 62 261-327 155-216 (270)
90 1wwl_A Monocyte differentiatio 98.1 2.3E-07 7.7E-12 87.8 -0.6 194 102-327 95-307 (312)
91 3e4g_A ATP synthase subunit S, 98.1 6.1E-07 2.1E-11 77.1 1.9 85 126-231 61-150 (176)
92 1h6t_A Internalin B; cell adhe 98.1 1.3E-06 4.5E-11 81.7 4.2 79 102-186 68-146 (291)
93 3un9_A NLR family member X1; l 98.1 4.1E-07 1.4E-11 88.4 -0.1 45 282-326 205-249 (372)
94 2o6q_A Variable lymphocyte rec 98.1 8.8E-07 3E-11 81.8 1.6 178 126-353 37-215 (270)
95 3cvr_A Invasion plasmid antige 98.0 2.3E-06 7.8E-11 87.6 4.2 93 126-232 80-172 (571)
96 1m9s_A Internalin B; cell inva 98.0 1.8E-06 6.1E-11 89.2 2.8 122 102-233 65-188 (605)
97 4glp_A Monocyte differentiatio 98.0 3.6E-07 1.2E-11 86.2 -2.6 214 75-298 66-304 (310)
98 1xeu_A Internalin C; cellular 98.0 9.7E-07 3.3E-11 81.4 -0.1 163 126-326 19-182 (263)
99 2ell_A Acidic leucine-rich nuc 98.0 2E-06 6.7E-11 73.3 1.7 57 126-185 24-82 (168)
100 1p9a_G Platelet glycoprotein I 98.0 3.8E-06 1.3E-10 78.5 3.7 58 126-186 10-67 (290)
101 3rfs_A Internalin B, repeat mo 97.9 1.8E-06 6.2E-11 79.8 1.4 57 126-186 41-97 (272)
102 2z62_A TOLL-like receptor 4, v 97.9 3E-06 1E-10 78.3 2.7 105 125-233 51-162 (276)
103 3un9_A NLR family member X1; l 97.9 1.3E-06 4.3E-11 84.9 0.0 77 280-359 175-255 (372)
104 2je0_A Acidic leucine-rich nuc 97.9 1E-06 3.6E-11 73.4 -1.1 58 126-186 17-76 (149)
105 4ezg_A Putative uncharacterize 97.9 1.5E-05 5E-10 69.8 5.5 59 126-185 88-147 (197)
106 3m19_A Variable lymphocyte rec 97.8 2.3E-06 7.9E-11 78.0 0.2 60 126-186 35-95 (251)
107 2xwt_C Thyrotropin receptor; s 97.8 1.4E-05 4.8E-10 72.1 4.7 168 125-325 54-235 (239)
108 2e31_A FBS1, F-box only protei 97.7 6.6E-06 2.3E-10 76.3 1.5 35 1-36 51-86 (297)
109 1p9a_G Platelet glycoprotein I 97.7 3.3E-06 1.1E-10 79.0 -0.5 58 126-186 31-89 (290)
110 2o6s_A Variable lymphocyte rec 97.7 5E-06 1.7E-10 73.4 0.5 60 126-186 28-88 (208)
111 3m19_A Variable lymphocyte rec 97.7 5.8E-06 2E-10 75.3 0.6 61 125-186 58-119 (251)
112 3cvr_A Invasion plasmid antige 97.7 1.1E-05 3.8E-10 82.5 2.5 91 126-233 100-193 (571)
113 4g8a_A TOLL-like receptor 4; l 97.7 8.1E-05 2.8E-09 76.5 8.4 126 102-235 52-188 (635)
114 2ell_A Acidic leucine-rich nuc 97.7 6E-06 2.1E-10 70.2 -0.2 61 125-187 48-108 (168)
115 4g8a_A TOLL-like receptor 4; l 97.5 4.3E-05 1.5E-09 78.6 4.1 109 260-379 466-575 (635)
116 2je0_A Acidic leucine-rich nuc 97.4 2.3E-05 7.7E-10 65.1 -0.5 60 125-186 41-100 (149)
117 2v9t_B SLIT homolog 2 protein 97.2 3.7E-05 1.3E-09 68.6 -0.6 60 126-186 32-92 (220)
118 3e6j_A Variable lymphocyte rec 97.2 4.3E-05 1.5E-09 68.6 -0.2 127 126-274 40-170 (229)
119 3l2o_B F-box only protein 4; s 97.2 3.2E-05 1.1E-09 71.0 -1.2 34 1-35 5-38 (312)
120 2ra8_A Uncharacterized protein 97.2 0.0003 1E-08 67.7 5.3 104 75-183 109-228 (362)
121 1ds9_A Outer arm dynein; leuci 97.1 3E-05 1E-09 67.8 -2.4 56 126-184 70-125 (198)
122 1a9n_A U2A', U2A'; complex (nu 97.1 4E-05 1.4E-09 65.7 -1.6 56 127-184 43-98 (176)
123 1io0_A Tropomodulin; LRR prote 97.1 0.0007 2.4E-08 58.5 6.3 117 261-380 34-160 (185)
124 2o6s_A Variable lymphocyte rec 97.1 0.00012 4.2E-09 64.3 1.2 60 126-186 52-112 (208)
125 1ds9_A Outer arm dynein; leuci 97.1 1.1E-05 3.9E-10 70.6 -5.6 59 125-186 47-105 (198)
126 3e6j_A Variable lymphocyte rec 97.0 0.00026 8.8E-09 63.4 2.7 103 126-232 64-171 (229)
127 2v9t_B SLIT homolog 2 protein 97.0 0.00012 4.2E-09 65.1 0.5 60 126-186 56-116 (220)
128 1a9n_A U2A', U2A'; complex (nu 97.0 3.7E-05 1.3E-09 65.9 -3.2 57 126-185 19-75 (176)
129 4ay9_X Follicle-stimulating ho 97.0 0.00062 2.1E-08 65.0 4.9 186 125-325 53-255 (350)
130 1dce_A Protein (RAB geranylger 96.9 2.6E-06 8.7E-11 87.4 -12.8 102 221-328 442-545 (567)
131 2xot_A Amphoterin-induced prot 96.9 0.00016 5.5E-09 69.5 0.4 104 126-233 39-149 (361)
132 4ay9_X Follicle-stimulating ho 96.9 0.00053 1.8E-08 65.5 4.0 35 126-160 30-65 (350)
133 2v70_A SLIT-2, SLIT homolog 2 96.9 0.00019 6.6E-09 63.8 0.4 60 126-186 32-93 (220)
134 2v70_A SLIT-2, SLIT homolog 2 96.8 0.00018 6.1E-09 64.1 -0.4 61 125-186 56-117 (220)
135 3sb4_A Hypothetical leucine ri 96.8 0.0031 1.1E-07 59.5 8.0 102 262-377 225-327 (329)
136 2wfh_A SLIT homolog 2 protein 96.7 0.00025 8.7E-09 61.7 0.3 59 126-185 31-89 (193)
137 1w8a_A SLIT protein; signaling 96.7 0.00026 9E-09 61.5 0.3 60 126-186 29-90 (192)
138 2o6r_A Variable lymphocyte rec 96.7 0.00022 7.5E-09 60.9 -0.3 60 126-186 28-88 (177)
139 3v7d_B Cell division control p 96.7 0.00019 6.5E-09 70.6 -1.0 35 2-37 16-50 (464)
140 1w8a_A SLIT protein; signaling 96.5 0.00096 3.3E-08 57.8 2.5 103 123-231 6-113 (192)
141 2xot_A Amphoterin-induced prot 96.4 0.0058 2E-07 58.5 7.4 111 261-380 86-198 (361)
142 2ovr_B FBW7, F-BOX/WD repeat p 96.4 0.00093 3.2E-08 65.4 1.5 34 1-35 19-52 (445)
143 1p22_A F-BOX/WD-repeat protein 96.1 0.00052 1.8E-08 67.2 -1.6 33 2-35 12-48 (435)
144 1dce_A Protein (RAB geranylger 96.1 0.00082 2.8E-08 68.7 -0.4 58 126-186 441-498 (567)
145 3sb4_A Hypothetical leucine ri 95.9 0.0098 3.3E-07 56.0 6.1 98 241-345 226-326 (329)
146 4b8c_D Glucose-repressible alc 95.8 0.0011 3.6E-08 70.0 -1.3 104 125-233 223-329 (727)
147 1io0_A Tropomodulin; LRR prote 95.4 0.0099 3.4E-07 51.1 3.7 97 279-378 27-128 (185)
148 2wfh_A SLIT homolog 2 protein 95.4 0.0044 1.5E-07 53.7 1.4 54 129-186 13-66 (193)
149 3g39_A Variable lymphocyte rec 95.3 0.003 1E-07 53.5 -0.1 60 126-186 30-90 (170)
150 2r9u_A Variable lymphocyte rec 95.1 0.0043 1.5E-07 52.8 0.3 60 126-186 33-93 (174)
151 2o6r_A Variable lymphocyte rec 95.0 0.0066 2.2E-07 51.5 1.4 61 125-186 51-112 (177)
152 2r9u_A Variable lymphocyte rec 94.7 0.013 4.4E-07 49.8 2.4 61 125-186 56-117 (174)
153 3g39_A Variable lymphocyte rec 94.6 0.016 5.4E-07 48.9 2.7 61 125-186 53-114 (170)
154 4b8c_D Glucose-repressible alc 93.8 0.014 4.8E-07 61.4 0.9 41 144-186 219-259 (727)
155 4fdw_A Leucine rich hypothetic 93.0 0.18 6E-06 48.9 7.1 13 145-157 176-188 (401)
156 2ifg_A High affinity nerve gro 91.8 0.033 1.1E-06 52.6 0.3 60 126-186 31-92 (347)
157 1pgv_A TMD-1, tropomodulin TMD 90.1 0.52 1.8E-05 40.7 6.2 116 261-379 39-165 (197)
158 4fdw_A Leucine rich hypothetic 89.8 1.3 4.4E-05 42.7 9.5 93 126-229 135-235 (401)
159 3rw6_A Nuclear RNA export fact 87.1 0.72 2.5E-05 41.9 5.3 89 285-378 167-258 (267)
160 3rw6_A Nuclear RNA export fact 84.5 0.32 1.1E-05 44.2 1.6 60 125-186 169-232 (267)
161 2ifg_A High affinity nerve gro 79.5 0.3 1E-05 45.8 -0.7 36 126-161 56-92 (347)
162 4fs7_A Uncharacterized protein 71.3 4.9 0.00017 38.2 5.6 98 261-376 295-393 (394)
163 1pgv_A TMD-1, tropomodulin TMD 69.1 2.7 9.4E-05 36.1 2.8 98 279-379 32-134 (197)
164 3rfe_A Platelet glycoprotein I 48.7 7.4 0.00025 30.7 1.9 34 126-159 31-65 (130)
165 4gt6_A Cell surface protein; l 21.3 58 0.002 30.5 3.3 76 124-209 286-366 (394)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.5e-21 Score=202.06 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=46.6
Q ss_pred CCCCcHHHHHHHHccCCccceeeecccccchHHHHHccCCCcEEeecCCCccccccchhHHHHHHHHHHhcCCCeeeEEE
Q 046555 1 MEQLPVEVIGNILSRLGGARDVVIASATCKKWQEAYRKHLHTLSFNSNDWSVYHDLTTTRLEILITQTIFQTSGLQGLSI 80 (418)
Q Consensus 1 is~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~~~~~~l~f~~~~~~~~~~~~~~~~~~~v~~~l~~~~~l~~l~l 80 (418)
++.||||+|.+||++||..++.+.++.|||||+++.......+++.... . ..+ .+++.+.+.++++.+
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~----~-~~~-------~~~~~~~~~L~~L~L 73 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCY----A-VSP-------ATVIRRFPKVRSVEL 73 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTT----S-SCH-------HHHHHHCTTCCEEEE
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeecccc----c-cCH-------HHHHhhCCCceEEec
Confidence 5789999999999999966888999999999998843222345543311 1 111 134556788999998
Q ss_pred Ee
Q 046555 81 LM 82 (418)
Q Consensus 81 ~~ 82 (418)
..
T Consensus 74 ~~ 75 (594)
T 2p1m_B 74 KG 75 (594)
T ss_dssp EC
T ss_pred cC
Confidence 86
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.2e-21 Score=202.73 Aligned_cols=361 Identities=17% Similarity=0.185 Sum_probs=171.5
Q ss_pred CCCcHHHHHHHHccCCccceeeecccccchHHHHHccCCCcEEeecCCCccccccchhHHHHHHHHHHhcCCCeeeEEEE
Q 046555 2 EQLPVEVIGNILSRLGGARDVVIASATCKKWQEAYRKHLHTLSFNSNDWSVYHDLTTTRLEILITQTIFQTSGLQGLSIL 81 (418)
Q Consensus 2 s~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~~~~~~l~f~~~~~~~~~~~~~~~~~~~v~~~l~~~~~l~~l~l~ 81 (418)
++||||+|.+||++|+..++.+.++.|||||++++......+..... +.. ...+++.+.+.++++.+.
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~----~~~--------~~~~~~~~~~~L~~L~L~ 81 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC----YTA--------TPDRLSRRFPNLRSLKLK 81 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCG----GGS--------CHHHHHHHCTTCSEEEEE
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeec----ccc--------ChHHHHHhCCCCeEEEec
Confidence 47999999999999943678888899999999996544433332210 111 123445566778888886
Q ss_pred ecCC--------CCCChHHHHHHHHHh--h-CCceEEEEee-cCCC-Cccccccccccc-eeEEEEeceE-ecC--CCCC
Q 046555 82 MDDV--------DEFSASTVIAWLMYT--R-ETLRRLYYNV-RTTP-NVNILEICGRQK-LEVLALAHNT-ITG--VEPN 144 (418)
Q Consensus 82 ~~~~--------~~~~~~~v~~wl~~~--~-~~l~~L~l~~-~~~~-~~~~~~~~~~~~-L~~L~L~~~~-l~~--~~~~ 144 (418)
.... ..+ ......|+... . +++++|++.. .... ....+. ..+++ |++|+|++|. +.+ ....
T Consensus 82 ~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~-~~~~~~L~~L~L~~~~~~~~~~l~~~ 159 (592)
T 3ogk_B 82 GKPRAAMFNLIPENW-GGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLA-KARADDLETLKLDKCSGFTTDGLLSI 159 (592)
T ss_dssp CSCGGGGGTCSCTTS-CCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH-HHHGGGCCEEEEESCEEEEHHHHHHH
T ss_pred CCcchhhcccccccc-cccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHH-HhccccCcEEECcCCCCcCHHHHHHH
Confidence 5210 000 01113344432 2 7777777741 1111 000111 00133 7777777663 322 1112
Q ss_pred CccccccceeEEeeEEecHHH---HHHHHHcCcccceeeecCCcccc--cccceeEEecCCcccEEEEEeeccc---eEE
Q 046555 145 FQRFPCLKSLSLSYVSISALD---LSLLLTACQKIEILELVSPEIAM--LDAQVTVELTSPTLKSIYVEAISLD---KFI 216 (418)
Q Consensus 145 ~~~~p~L~~L~L~~v~~~~~~---l~~ll~~cp~Le~L~l~~~~~~~--~~~~~~~~i~~~~L~~L~l~~~~~~---~~~ 216 (418)
...+|+|++|+|+++.+++.+ +..+...||+|+.|++.++.+.. ..+...+...+++|+.|.+.++.+. ...
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~ 239 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence 235677777777766654332 55566667777777766544320 0111111113456666666543211 111
Q ss_pred EeCCCccEEEeec---------------------------cceeeEEE--ecCCceeEEEecceeEEee---ccCCCcCC
Q 046555 217 LEADSIERLHLKD---------------------------CALELFEL--VGRGTLKHFKIDDVSVIHL---DIGDTVDN 264 (418)
Q Consensus 217 ~~~P~L~~L~l~~---------------------------~~~~~~~~--~~~~~L~~l~l~~~~~~~l---~i~~~~~~ 264 (418)
...|+|++|++++ +....+.. ...++|+++.+....+... .+...+++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 2245555555542 21110000 0123455555544332111 11234556
Q ss_pred ceeEEeeccccchHHHHHhhhcCCCccEEEEcc----------cccCccccccHhHHhhcCCCCceeeeeeeccc-ceec
Q 046555 265 LEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWD----------VVFDEDEVLDLETIGVCFPQLSHLSLSYDLKD-GVLH 333 (418)
Q Consensus 265 L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~----------~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~-~~l~ 333 (418)
|+.|++++. .....+......+++|+.|++.+ +... ....+..+...+|+|++|.++..... ....
T Consensus 320 L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~--~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~ 396 (592)
T 3ogk_B 320 LEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV--SQRGLIALAQGCQELEYMAVYVSDITNESLE 396 (592)
T ss_dssp CCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC--CHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred CCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc--CHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence 666666521 11111222334456666666652 1111 11123334455677777776443221 1122
Q ss_pred ccccCCCCcceEEEEecC-Ccccccch-HHHHHHHHhcCcccceEEEe
Q 046555 334 YGLQGSANLENVAVLELG-WPVISDLF-SHWVEGLLKRCPNLRRLVIF 379 (418)
Q Consensus 334 ~~l~~~~~Le~l~vl~l~-~~~~~d~~-~~~l~~ll~~c~~Lk~L~i~ 379 (418)
.+..++++|+.+.+-.++ .+.+++.. ...+..++..|++|+.|.+.
T Consensus 397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 222335556665543222 23344321 12345566778888888884
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=7.2e-19 Score=168.96 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=32.1
Q ss_pred CCCCcHHHHHHHHccCCccceeeecccccchHHHHHc
Q 046555 1 MEQLPVEVIGNILSRLGGARDVVIASATCKKWQEAYR 37 (418)
Q Consensus 1 is~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~ 37 (418)
++.||||+|.+||++|+ .++.+.++.|||||+.+..
T Consensus 9 ~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp SSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHT
T ss_pred hhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999 4678888999999999964
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.21 E-value=3.7e-11 Score=123.91 Aligned_cols=296 Identities=16% Similarity=0.145 Sum_probs=178.7
Q ss_pred HHHHhcCCCeeeEEEEecCCCCCChHHHHHHHHHhh-CCceEEEEee-c--CCCCc-cccccccccceeEEEEeceEecC
Q 046555 66 TQTIFQTSGLQGLSILMDDVDEFSASTVIAWLMYTR-ETLRRLYYNV-R--TTPNV-NILEICGRQKLEVLALAHNTITG 140 (418)
Q Consensus 66 ~~~l~~~~~l~~l~l~~~~~~~~~~~~v~~wl~~~~-~~l~~L~l~~-~--~~~~~-~~~~~~~~~~L~~L~L~~~~l~~ 140 (418)
..+....+.++.+.+..... ... ...|+.... .++++|++.. . ..... .+. ..+++|++|+|++|.+.+
T Consensus 105 ~~l~~~~~~L~~L~L~~~~i---~~~-~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~ 178 (592)
T 3ogk_B 105 TEISNNLRQLKSVHFRRMIV---SDL-DLDRLAKARADDLETLKLDKCSGFTTDGLLSIV--THCRKIKTLLMEESSFSE 178 (592)
T ss_dssp HHHHHHCTTCCEEEEESCBC---CHH-HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHH--HHCTTCSEEECTTCEEEC
T ss_pred HHHHhhCCCCCeEEeeccEe---cHH-HHHHHHHhccccCcEEECcCCCCcCHHHHHHHH--hhCCCCCEEECccccccC
Confidence 33444567799999886322 222 234555444 4599999941 1 11111 011 245899999999998866
Q ss_pred CCC-----CCccccccceeEEeeEEec---HHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEEEEE----
Q 046555 141 VEP-----NFQRFPCLKSLSLSYVSIS---ALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSIYVE---- 208 (418)
Q Consensus 141 ~~~-----~~~~~p~L~~L~L~~v~~~---~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~---- 208 (418)
... ....+|+|++|+|++..++ +..+..++..||+|+.|++.+|.+.. ....-...++|+.|.+.
T Consensus 179 ~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---l~~~~~~~~~L~~L~l~~~~~ 255 (592)
T 3ogk_B 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE---LVGFFKAAANLEEFCGGSLNE 255 (592)
T ss_dssp CCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG---GHHHHHHCTTCCEEEECBCCC
T ss_pred cchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH---HHHHHhhhhHHHhhccccccc
Confidence 321 2356899999999887665 67889999999999999999865421 10000112344444443
Q ss_pred -----------------------ee---ccceEEEeCCCccEEEeeccceeeEEE----ecCCceeEEEecceeEEe---
Q 046555 209 -----------------------AI---SLDKFILEADSIERLHLKDCALELFEL----VGRGTLKHFKIDDVSVIH--- 255 (418)
Q Consensus 209 -----------------------~~---~~~~~~~~~P~L~~L~l~~~~~~~~~~----~~~~~L~~l~l~~~~~~~--- 255 (418)
.. .+..+.-.+|+|++|++++|.+..... .+.++|+.+.+... +..
T Consensus 256 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l 334 (592)
T 3ogk_B 256 DIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGL 334 (592)
T ss_dssp CTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHH
T ss_pred ccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHH
Confidence 21 111122237899999999987532211 24578888887521 110
Q ss_pred eccCCCcCCceeEEeec----------cccchHH-HHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeee
Q 046555 256 LDIGDTVDNLEIVDVSS----------FTIFWPK-FYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLS 324 (418)
Q Consensus 256 l~i~~~~~~L~~l~l~~----------~~~~~~~-~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~ 324 (418)
..+...+++|+.|++.+ +....+. +......+++|+.|.+....+. ...+..+...+++|++|.++
T Consensus 335 ~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~---~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT---NESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC---HHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc---HHHHHHHHhhCCCCcEEEEe
Confidence 11234678999999994 4444433 4444567899999998432222 12344566678999999997
Q ss_pred eec----ccc-----eecccccCCCCcceEEEEecCCc--ccccchHHHHHHHHhcCcccceEEEee
Q 046555 325 YDL----KDG-----VLHYGLQGSANLENVAVLELGWP--VISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 325 ~~~----~~~-----~l~~~l~~~~~Le~l~vl~l~~~--~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
... ..+ .+.....++++|+.|. +.++ .+++ ..+..+.+.|++|+.|.|..
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~---L~~~~~~l~~---~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFA---FYLRQGGLTD---LGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE---EECCGGGCCH---HHHHHHHHSCTTCCEEEECS
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEE---EecCCCCccH---HHHHHHHHhCccceEeeccC
Confidence 421 111 1223345566666654 4321 2444 34566778899999999964
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.15 E-value=6.1e-11 Score=113.97 Aligned_cols=231 Identities=16% Similarity=0.116 Sum_probs=124.4
Q ss_pred ccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 125 RQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
+++|++|++++|.+.+. +....+++|++|+|+++.+.+..- +..+++|+.|++.+|........ --..++|+.
T Consensus 87 l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~ 159 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNY 159 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCE
T ss_pred CCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccc---hhhCCCCcE
Confidence 36677777776666553 235566667777776665543211 55667777777766532111110 012356666
Q ss_pred EEEEeeccceE--EEeCCCccEEEeeccceeeEE-EecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHH
Q 046555 205 IYVEAISLDKF--ILEADSIERLHLKDCALELFE-LVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFY 281 (418)
Q Consensus 205 L~l~~~~~~~~--~~~~P~L~~L~l~~~~~~~~~-~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~ 281 (418)
|.+.+..+..+ ....|+|++|++++|.+..+. ....++++.+.+....+........+++|+.++++++......
T Consensus 160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~-- 237 (347)
T 4fmz_A 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS-- 237 (347)
T ss_dssp EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--
T ss_pred EEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCc--
Confidence 66664322211 123577777777777654332 2233556666665544333222335677888877765543211
Q ss_pred HhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHH
Q 046555 282 QMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSH 361 (418)
Q Consensus 282 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~ 361 (418)
.+..+++|+.|++.+..+.. .+ ....+++|++|.++++...+. ..+..+ .+|+.|++..+.+.+...
T Consensus 238 -~~~~l~~L~~L~l~~n~l~~-----~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l---~~L~~L~L~~n~l~~~~~- 304 (347)
T 4fmz_A 238 -PLANLSQLTWLEIGTNQISD-----IN-AVKDLTKLKMLNVGSNQISDI--SVLNNL---SQLNSLFLNNNQLGNEDM- 304 (347)
T ss_dssp -GGTTCTTCCEEECCSSCCCC-----CG-GGTTCTTCCEEECCSSCCCCC--GGGGGC---TTCSEEECCSSCCCGGGH-
T ss_pred -chhcCCCCCEEECCCCccCC-----Ch-hHhcCCCcCEEEccCCccCCC--hhhcCC---CCCCEEECcCCcCCCcCh-
Confidence 15567778888776543331 11 134567888888877633221 122333 344556676666655432
Q ss_pred HHHHHHhcCcccceEEEee
Q 046555 362 WVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 362 ~l~~ll~~c~~Lk~L~i~~ 380 (418)
..+..+++|+.|.+.+
T Consensus 305 ---~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 305 ---EVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp ---HHHHTCTTCSEEECCS
T ss_pred ---hHhhccccCCEEEccC
Confidence 2234688888888864
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.15 E-value=1.2e-11 Score=127.54 Aligned_cols=106 Identities=19% Similarity=0.276 Sum_probs=76.2
Q ss_pred ccceeEEEEeceEecCCC--CCCccccccceeEEeeE-EecHHHHHHHHHcCcccceeeecCCccccccc--ceeEEecC
Q 046555 125 RQKLEVLALAHNTITGVE--PNFQRFPCLKSLSLSYV-SISALDLSLLLTACQKIEILELVSPEIAMLDA--QVTVELTS 199 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~--~~~~~~p~L~~L~L~~v-~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~--~~~~~i~~ 199 (418)
+++|++|+|++|.+++.. .....||+|++|+|.+| .+++..+..+...||+|+.|++++|.+..... ...+.-..
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 589999999999876622 12236899999999998 68888899999999999999999876422111 11122245
Q ss_pred CcccEEEEEeec-------cceEEEeCCCccEEEeecc
Q 046555 200 PTLKSIYVEAIS-------LDKFILEADSIERLHLKDC 230 (418)
Q Consensus 200 ~~L~~L~l~~~~-------~~~~~~~~P~L~~L~l~~~ 230 (418)
++|+.|+++... +..+...+|+|++|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 789999887442 1122233799999999887
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.14 E-value=7.8e-11 Score=113.20 Aligned_cols=250 Identities=16% Similarity=0.190 Sum_probs=164.5
Q ss_pred CCceEEEEeecCCCCccccccccccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeee
Q 046555 102 ETLRRLYYNVRTTPNVNILEICGRQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILEL 181 (418)
Q Consensus 102 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l 181 (418)
+++++|++....-.....+ ..+++|++|++++|.+.+..+ ...+++|++|+|+++.+.+- . -+..+|+|+.|++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~--~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGI--EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCCTTG--GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccchhh--hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEEC
Confidence 6788888841111111112 224899999999998887554 77899999999998877642 1 2678999999999
Q ss_pred cCCcccccccceeEEecCCcccEEEEEeec-cce--EEEeCCCccEEEeeccceeeEE-EecCCceeEEEecceeEEeec
Q 046555 182 VSPEIAMLDAQVTVELTSPTLKSIYVEAIS-LDK--FILEADSIERLHLKDCALELFE-LVGRGTLKHFKIDDVSVIHLD 257 (418)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~-~~~--~~~~~P~L~~L~l~~~~~~~~~-~~~~~~L~~l~l~~~~~~~l~ 257 (418)
++|.+...... -..++|+.|.+++.. ... .....++|++|++++|.+.... ....++|+.+.+....+..+.
T Consensus 118 ~~n~i~~~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 118 NEDNISDISPL----ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TTSCCCCCGGG----TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCG
T ss_pred cCCcccCchhh----ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccc
Confidence 99776432221 124788888887541 111 1224789999999998765443 234577888888776554443
Q ss_pred cCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceeccccc
Q 046555 258 IGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQ 337 (418)
Q Consensus 258 i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~ 337 (418)
....+++|+.+++++....... .+..+++|+.|++.+..+... .. ...+++|++|.++++...+. ..+.
T Consensus 194 ~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~--~~~~ 262 (347)
T 4fmz_A 194 PLASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITDL-----SP-LANLSQLTWLEIGTNQISDI--NAVK 262 (347)
T ss_dssp GGGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCCC--GGGT
T ss_pred cccCCCccceeecccCCCCCCc---hhhcCCcCCEEEccCCccCCC-----cc-hhcCCCCCEEECCCCccCCC--hhHh
Confidence 3446788999998876543211 166788999999876654321 11 45678999999988643321 1233
Q ss_pred CCCCcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEeee
Q 046555 338 GSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFGV 381 (418)
Q Consensus 338 ~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~~ 381 (418)
. +.+|+.+++..+.+++.. .+..+++|+.|.+.+.
T Consensus 263 ~---l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~~n 297 (347)
T 4fmz_A 263 D---LTKLKMLNVGSNQISDIS------VLNNLSQLNSLFLNNN 297 (347)
T ss_dssp T---CTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSS
T ss_pred c---CCCcCEEEccCCccCCCh------hhcCCCCCCEEECcCC
Confidence 3 445566777777766641 2467999999999743
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.07 E-value=1.8e-10 Score=115.48 Aligned_cols=232 Identities=18% Similarity=0.247 Sum_probs=110.7
Q ss_pred ccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 125 RQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
+++|++|++++|.+.+..+ ...+++|++|+|+++.+.+..- +..+|+|+.|++++|.+...... -..++|+.
T Consensus 89 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~ 160 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISAL----SGLTSLQQ 160 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCGGG----TTCTTCSE
T ss_pred cccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCChhh----ccCCcccE
Confidence 4678888887777766444 5677778888887766654221 56778888888877554221111 01245566
Q ss_pred EEEEee--ccceEEEeCCCccEEEeeccceeeEEEe-cCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHH
Q 046555 205 IYVEAI--SLDKFILEADSIERLHLKDCALELFELV-GRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFY 281 (418)
Q Consensus 205 L~l~~~--~~~~~~~~~P~L~~L~l~~~~~~~~~~~-~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~ 281 (418)
|.+... .... ....++|+.|++++|.+..+..+ ..++|+.+.+....+....-...+++|+.+++++......
T Consensus 161 L~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--- 236 (466)
T 1o6v_A 161 LSFGNQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--- 236 (466)
T ss_dssp EEEEESCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---
T ss_pred eecCCcccCchh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---
Confidence 655421 0110 11245666666666654433221 2245555555443322211112345555555554332210
Q ss_pred HhhhcCCCccEEEEcccccCccc-----------------cccHhHHhhcCCCCceeeeeeecccceecccccCCCCcce
Q 046555 282 QMISRSSKLKKLRLWDVVFDEDE-----------------VLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLEN 344 (418)
Q Consensus 282 ~~l~~~~~L~~L~L~~~~~~~~~-----------------~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~ 344 (418)
..+..+++|+.|++.+..+.... ..+... ...+++|++|.++.+...+... +.. +.+
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~---l~~ 310 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISN---LKN 310 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGG---CTT
T ss_pred hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcC---CCC
Confidence 12333444555444332221100 000001 2234556666555542222111 222 334
Q ss_pred EEEEecCCcccccchHHHHHHHHhcCcccceEEEee
Q 046555 345 VAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 345 l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
|+.|++..+.+.+... +..+++|+.|.+.+
T Consensus 311 L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP------VSSLTKLQRLFFYN 340 (466)
T ss_dssp CSEEECCSSCCSCCGG------GGGCTTCCEEECCS
T ss_pred CCEEECcCCcCCCchh------hccCccCCEeECCC
Confidence 4455666655555421 35678888888764
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.04 E-value=2.2e-10 Score=114.89 Aligned_cols=249 Identities=16% Similarity=0.194 Sum_probs=140.3
Q ss_pred CCceEEEEeecCCCCccccccccccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeee
Q 046555 102 ETLRRLYYNVRTTPNVNILEICGRQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILEL 181 (418)
Q Consensus 102 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l 181 (418)
.++++|++....-.. +.....+++|++|++++|.+.+..+ ...+++|+.|+|+++.+.+.. . +..+++|+.|.+
T Consensus 90 ~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l 163 (466)
T 1o6v_A 90 TKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS--A-LSGLTSLQQLSF 163 (466)
T ss_dssp TTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG--G-GTTCTTCSEEEE
T ss_pred ccCCEEECCCCcccc--ChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh--h-hccCCcccEeec
Confidence 677777773111111 1111234899999999998887544 678999999999999876521 1 445555555555
Q ss_pred ---------------------cCCcccccccceeEEecCCcccEEEEEeeccceE--EEeCCCccEEEeeccceeeEEEe
Q 046555 182 ---------------------VSPEIAMLDAQVTVELTSPTLKSIYVEAISLDKF--ILEADSIERLHLKDCALELFELV 238 (418)
Q Consensus 182 ---------------------~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~--~~~~P~L~~L~l~~~~~~~~~~~ 238 (418)
++|.+..-... -..++|+.|.+++..+..+ .-..++|+.|++++|.+..+..+
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l 239 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNKVSDISVL----AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 239 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSCCCCCGGG----GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred CCcccCchhhccCCCCCEEECcCCcCCCChhh----ccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhh
Confidence 43322110000 0124555555553321111 01246666666666655433222
Q ss_pred -cCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCC
Q 046555 239 -GRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQ 317 (418)
Q Consensus 239 -~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~ 317 (418)
..++|+.+.+....+........+++|+.+++++...... ..+..+++|+.|++.+..+.+ ... ...+++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~-~~~l~~ 310 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLED-----ISP-ISNLKN 310 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCSC-----CGG-GGGCTT
T ss_pred hcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc---ccccCCCccCeEEcCCCcccC-----chh-hcCCCC
Confidence 2355666666554433222233567777777776544321 115567788888876554331 111 356899
Q ss_pred CceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEee
Q 046555 318 LSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 318 L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
|++|.++++...+... +..++ +|+.|++..+.+.+.. -+.++++|+.|.+.+
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~---~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLT---KLQRLFFYNNKVSDVS------SLANLTNINWLSAGH 362 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCT---TCCEEECCSSCCCCCG------GGTTCTTCCEEECCS
T ss_pred CCEEECcCCcCCCchh--hccCc---cCCEeECCCCccCCch------hhccCCCCCEEeCCC
Confidence 9999999874433322 33444 4555677766666641 245799999999964
No 10
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.03 E-value=6.7e-12 Score=125.37 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=120.2
Q ss_pred cceeEEEEeceEecCC-----CCCCccccccceeEEeeEEecHHHHHHHHHcCc----ccceeeecCCcccccccceeE-
Q 046555 126 QKLEVLALAHNTITGV-----EPNFQRFPCLKSLSLSYVSISALDLSLLLTACQ----KIEILELVSPEIAMLDAQVTV- 195 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~-----~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp----~Le~L~l~~~~~~~~~~~~~~- 195 (418)
++|++|+|++|.+.+. ......+++|++|+|++..+++.+...+...++ +|+.|++++|.+.. .+...+
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~-~~~~~l~ 106 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG-AGCGVLS 106 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG-GGHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH-HHHHHHH
Confidence 6777777777766531 112334567777777777676666666666666 57777777765431 110000
Q ss_pred -E-ecCCcccEEEEEeeccce-----EE---E-eCCCccEEEeeccceeeEE-------EecCCceeEEEecceeEEee-
Q 046555 196 -E-LTSPTLKSIYVEAISLDK-----FI---L-EADSIERLHLKDCALELFE-------LVGRGTLKHFKIDDVSVIHL- 256 (418)
Q Consensus 196 -~-i~~~~L~~L~l~~~~~~~-----~~---~-~~P~L~~L~l~~~~~~~~~-------~~~~~~L~~l~l~~~~~~~l- 256 (418)
. -..++|+.|++++..+.. +. . ..++|++|++++|.+.... +...++|+++.+....+...
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 0 123566777666432211 00 0 1346777777766543211 01125566665554332110
Q ss_pred --ccCC----CcCCceeEEeeccccchH---HHHHhhhcCCCccEEEEcccccCccccccH-hHHhhcCCCCceeeeeee
Q 046555 257 --DIGD----TVDNLEIVDVSSFTIFWP---KFYQMISRSSKLKKLRLWDVVFDEDEVLDL-ETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 257 --~i~~----~~~~L~~l~l~~~~~~~~---~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~-~~l~~~fp~L~~L~l~~~ 326 (418)
.+.+ ..++|+.|+++++..... .+...+..+++|+.|++.+..+.+.....+ +.+...+++|++|+++++
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 0111 234666776666544322 233445556677777665443221100000 112223567777777665
Q ss_pred cccc-e---ecccccCCCCcceEEEEecCCcccccchHHHHHHHH-hcCcccceEEEee
Q 046555 327 LKDG-V---LHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLL-KRCPNLRRLVIFG 380 (418)
Q Consensus 327 ~~~~-~---l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll-~~c~~Lk~L~i~~ 380 (418)
...+ . +...+..++ +|+.|+++++.+++.....+...+ ...++|+.|.+.+
T Consensus 267 ~l~~~~~~~l~~~l~~~~---~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKE---SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp CCCHHHHHHHHHHHHHCT---TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred CCCHHHHHHHHHHHhhCC---CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 3221 1 112222333 344566666666553222222222 2336778777754
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.02 E-value=3.6e-10 Score=110.50 Aligned_cols=104 Identities=19% Similarity=0.291 Sum_probs=54.5
Q ss_pred cceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
++|++|+|++|.+.+..+. ...+++|+.|+|++..++.- -..++..+|+|+.|++++|.+...... .+ -..++|+.
T Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~-~~l~~L~~ 169 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDD-TF-QATTSLQN 169 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTT-TT-SSCTTCCE
T ss_pred CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEECCCCccCccChh-hc-cCCCCCCE
Confidence 6777777777776664332 45677777777776655421 011235677777777777654221110 00 01256666
Q ss_pred EEEEeeccceEEEe-CCCccEEEeeccce
Q 046555 205 IYVEAISLDKFILE-ADSIERLHLKDCAL 232 (418)
Q Consensus 205 L~l~~~~~~~~~~~-~P~L~~L~l~~~~~ 232 (418)
|.+++..+..+.+. .|+|+.|+++++.+
T Consensus 170 L~l~~n~l~~~~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 170 LQLSSNRLTHVDLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCccccccccccceeecccccc
Confidence 66664333222211 35555555555443
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.02 E-value=5.4e-10 Score=109.24 Aligned_cols=232 Identities=19% Similarity=0.181 Sum_probs=149.2
Q ss_pred ccceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCccc
Q 046555 125 RQKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLK 203 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~ 203 (418)
.++|++|+|++|.+...++. ...+++|++|+|++..+.+.. ...+..+++|+.|++++|.+... +. -..++|+
T Consensus 116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~----~~l~~L~ 189 (390)
T 3o6n_A 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHV-DL----SLIPSLF 189 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCSBC-CG----GGCTTCS
T ss_pred CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCCcc-cc----ccccccc
Confidence 47899999999988775443 467899999999887665311 12256789999999998765321 11 1136788
Q ss_pred EEEEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHh
Q 046555 204 SIYVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQM 283 (418)
Q Consensus 204 ~L~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~ 283 (418)
.+.++...+..+ -..++|++|+++++.+..+.....++|+.+.+....+........+++|+.+++++..... .....
T Consensus 190 ~L~l~~n~l~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~ 267 (390)
T 3o6n_A 190 HANVSYNLLSTL-AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-IMYHP 267 (390)
T ss_dssp EEECCSSCCSEE-ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE-EESGG
T ss_pred eeeccccccccc-CCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCC-cChhH
Confidence 888875544433 2356899999999887666544446778887776655444434467889999888765432 11234
Q ss_pred hhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHH
Q 046555 284 ISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWV 363 (418)
Q Consensus 284 l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l 363 (418)
+...++|+.|.+.+..+.. .......+|+|++|+++++...+ +...+.. +.+|+.|++..+.+.+..
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~---l~~L~~L~L~~N~i~~~~---- 334 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-----LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQ---FDRLENLYLDHNSIVTLK---- 334 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-----EECSSSCCTTCCEEECCSSCCCC-CGGGHHH---HTTCSEEECCSSCCCCCC----
T ss_pred ccccccCCEEECCCCcCcc-----cCcccCCCCCCCEEECCCCccee-cCccccc---cCcCCEEECCCCccceeC----
Confidence 5667888888886654331 11112356889999988763321 1111222 344555677766666542
Q ss_pred HHHHhcCcccceEEEee
Q 046555 364 EGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 364 ~~ll~~c~~Lk~L~i~~ 380 (418)
+..+++|+.|.+.+
T Consensus 335 ---~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 335 ---LSTHHTLKNLTLSH 348 (390)
T ss_dssp ---CCTTCCCSEEECCS
T ss_pred ---chhhccCCEEEcCC
Confidence 45688999999964
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.96 E-value=8.6e-10 Score=114.12 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=25.7
Q ss_pred cceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCc
Q 046555 126 QKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPE 185 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~ 185 (418)
++|++|+|++|.+.+..+. ...+++|+.|+|++..++.- ...++..+++|+.|++++|.
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCc
Confidence 4555555555554443222 24455555555554433310 01112344555555555443
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.94 E-value=9.5e-10 Score=110.40 Aligned_cols=260 Identities=17% Similarity=0.161 Sum_probs=151.5
Q ss_pred CCceEEEEe---e-cCCCCccccccccccceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCccc
Q 046555 102 ETLRRLYYN---V-RTTPNVNILEICGRQKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKI 176 (418)
Q Consensus 102 ~~l~~L~l~---~-~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~L 176 (418)
+++++|++. . ...+. .+ ..+++|++|+|++|.+....+ ....+++|++|+|++..+... ....+..+++|
T Consensus 56 ~~L~~L~L~~n~i~~~~~~--~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L 130 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPG--AF--NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNL 130 (477)
T ss_dssp TTCCEEECTTSCCCEECTT--TT--TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTC
T ss_pred CCCCEEECCCCccCEeChh--hh--hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccC
Confidence 678888883 1 11111 22 224788999998887776443 346788899998887655421 11124678899
Q ss_pred ceeeecCCcccccccceeEEecCCcccEEEEEeeccceEE----EeCCCccEEEeeccceeeEE---EecCCceeEEEec
Q 046555 177 EILELVSPEIAMLDAQVTVELTSPTLKSIYVEAISLDKFI----LEADSIERLHLKDCALELFE---LVGRGTLKHFKID 249 (418)
Q Consensus 177 e~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~----~~~P~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~ 249 (418)
+.|++.+|.+..-... .+ -..++|+.|.+++..+..+. -..++|+.|+++++.+.... ..+.++|+.+.+.
T Consensus 131 ~~L~l~~n~l~~~~~~-~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 131 KSLEVGDNDLVYISHR-AF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp CEEEECCTTCCEECTT-SS-TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred CEEECCCCccceeChh-hc-cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 9999988654221110 00 12367888888865443322 23688999999888765432 2234667777765
Q ss_pred ceeEE-eec-cCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeec
Q 046555 250 DVSVI-HLD-IGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDL 327 (418)
Q Consensus 250 ~~~~~-~l~-i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~ 327 (418)
..... .+. ......+|+.|++++..... .....+..+++|+.|++.+..+... .. .....+++|++|.++.+.
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~---~~-~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTI---EG-SMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHTTCTTCCEEECCSSCCCEE---CT-TSCTTCTTCCEEECCSSC
T ss_pred CCccccccCcccccCccccEEECcCCcccc-cCHHHhcCccccCeeECCCCcCCcc---Ch-hhccccccCCEEECCCCc
Confidence 53211 110 01123488888888765431 1123456778899998865443311 11 123456789999988764
Q ss_pred ccceecccccCCCCcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEee
Q 046555 328 KDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 328 ~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
..+.....+.+++ +|+.|++..+.++.... ..+..+++|+.|.+.+
T Consensus 284 l~~~~~~~~~~l~---~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 284 LAVVEPYAFRGLN---YLRVLNVSGNQLTTLEE----SVFHSVGNLETLILDS 329 (477)
T ss_dssp CSEECTTTBTTCT---TCCEEECCSSCCSCCCG----GGBSCGGGCCEEECCS
T ss_pred cceECHHHhcCcc---cCCEEECCCCcCceeCH----hHcCCCcccCEEEccC
Confidence 4433333344444 45556777666655421 2345689999999964
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.93 E-value=5.1e-10 Score=111.50 Aligned_cols=109 Identities=18% Similarity=0.175 Sum_probs=62.2
Q ss_pred CCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCC
Q 046555 260 DTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGS 339 (418)
Q Consensus 260 ~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~ 339 (418)
..+++|+.|++++..... .....+..+++|+.|++.+..+.+. . ......+++|++|+++++...+.....+.++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~---~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINK-IDDNAFWGLTHLLKLNLSQNFLGSI---D-SRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp TTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEE---C-GGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ccCCCCCEEECCCCcccc-cChhHhcCcccCCEEECCCCccCCc---C-hhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 356777777777654321 1112345567788887765433211 1 1123456888888888764443333333444
Q ss_pred CCcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEee
Q 046555 340 ANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 340 ~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
.+|+.|++..+.+++... ..+..+++|+.|.|.+
T Consensus 371 ---~~L~~L~L~~N~l~~~~~----~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 371 ---PNLKELALDTNQLKSVPD----GIFDRLTSLQKIWLHT 404 (455)
T ss_dssp ---TTCCEEECCSSCCSCCCT----TTTTTCTTCCEEECCS
T ss_pred ---ccccEEECCCCccccCCH----hHhccCCcccEEEccC
Confidence 455566777666655331 2345789999999964
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.92 E-value=3.1e-10 Score=117.42 Aligned_cols=171 Identities=12% Similarity=0.065 Sum_probs=92.8
Q ss_pred ccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 125 RQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
.++|++|++++|.+...++....+++|++|++++..+.+.. ...+..+|+|+.|++.+|.+........ --..++|+.
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~ 354 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGC-LENLENLRE 354 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSST-TTTCTTCCE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhh-hhccCcCCE
Confidence 37888888888877765555667788888888877665321 1235678888888888765421111000 002356777
Q ss_pred EEEEeeccceEE------EeCCCccEEEeeccceeeEE---EecCCceeEEEecceeEEeec---cCCCcCCceeEEeec
Q 046555 205 IYVEAISLDKFI------LEADSIERLHLKDCALELFE---LVGRGTLKHFKIDDVSVIHLD---IGDTVDNLEIVDVSS 272 (418)
Q Consensus 205 L~l~~~~~~~~~------~~~P~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~~~~~~l~---i~~~~~~L~~l~l~~ 272 (418)
|++++..+..+. ...|+|++|++++|.+.... ..+.++|+.+.+....+.... ....+++|+.+++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 777654444333 12567777777776554321 112355666666554443221 122455666666655
Q ss_pred cccchHHHHHhhhcCCCccEEEEccc
Q 046555 273 FTIFWPKFYQMISRSSKLKKLRLWDV 298 (418)
Q Consensus 273 ~~~~~~~~~~~l~~~~~L~~L~L~~~ 298 (418)
+.... .....+..+++|+.|++.+.
T Consensus 435 n~l~~-~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 435 SLLDI-SSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp CCCBT-TCTTTTTTCTTCCEEECTTC
T ss_pred CccCC-cCHHHHhCCCCCCEEECCCC
Confidence 43221 01122344555555555443
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.92 E-value=1.2e-08 Score=104.51 Aligned_cols=236 Identities=17% Similarity=0.188 Sum_probs=145.7
Q ss_pred ccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 125 RQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
+++|++|++++|.+...++....+ +|+.|++.++.+..-.. ..+|+|+.|.+.++.+...... ...++|+.
T Consensus 281 l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~----~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~ 351 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSE----VDLPSLEF 351 (570)
T ss_dssp GTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB----CBCSSCCEEEEESCBSCCBCCC----CBCTTCCE
T ss_pred cCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc----ccccccCEEeCcCCcccccccc----ccCCCCCE
Confidence 367888888888776654444555 78888887776552111 3678888888887654221111 23577888
Q ss_pred EEEEeeccceEE------EeCCCccEEEeeccceeeEE--EecCCceeEEEecceeEEee---ccCCCcCCceeEEeecc
Q 046555 205 IYVEAISLDKFI------LEADSIERLHLKDCALELFE--LVGRGTLKHFKIDDVSVIHL---DIGDTVDNLEIVDVSSF 273 (418)
Q Consensus 205 L~l~~~~~~~~~------~~~P~L~~L~l~~~~~~~~~--~~~~~~L~~l~l~~~~~~~l---~i~~~~~~L~~l~l~~~ 273 (418)
|++++..+.... ...|+|++|++++|.+.... ..+.++|+.+.+....+... .....+++|+.++++++
T Consensus 352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred EeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 888755444332 12688999999888765433 34557888888877655433 12346788999998876
Q ss_pred ccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCc
Q 046555 274 TIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWP 353 (418)
Q Consensus 274 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~ 353 (418)
.... .....+..+++|+.|.+.+..+.+.. .......+++|++|+++++...+.....+..++ +|+.|++..+
T Consensus 432 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~l~~n 504 (570)
T 2z63_A 432 HTRV-AFNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS---SLQVLNMASN 504 (570)
T ss_dssp CCEE-CCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT---TCCEEECCSS
T ss_pred cccc-cchhhhhcCCcCcEEECcCCcCcccc---chhhhhcccCCCEEECCCCccccCChhhhhccc---CCCEEeCCCC
Confidence 5322 11234566788999988765432110 111234568899999988754443333444444 4555677666
Q ss_pred ccccchHHHHHHHHhcCcccceEEEee
Q 046555 354 VISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 354 ~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
.+.+... ..+..+++|+.|.+.+
T Consensus 505 ~l~~~~~----~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 505 QLKSVPD----GIFDRLTSLQKIWLHT 527 (570)
T ss_dssp CCSCCCT----TTTTTCTTCCEEECCS
T ss_pred cCCCCCH----HHhhcccCCcEEEecC
Confidence 5555421 2245789999999974
No 18
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.91 E-value=2.8e-10 Score=108.20 Aligned_cols=229 Identities=12% Similarity=0.119 Sum_probs=111.9
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
++|++|+|++|.+.+..+ ....+++|+.|+|++..+++.. . +..+++|+.|++++|.+. .+. ..++|+.
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l~------~l~-~~~~L~~ 103 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYVQ------ELL-VGPSIET 103 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEEE------EEE-ECTTCCE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCccc------ccc-CCCCcCE
Confidence 455555555555544321 2344555555555544332110 0 345555555555554321 111 1245555
Q ss_pred EEEEeeccceEEEe-CCCccEEEeeccceeeEE---EecCCceeEEEecceeEEee---ccCCCcCCceeEEeeccccch
Q 046555 205 IYVEAISLDKFILE-ADSIERLHLKDCALELFE---LVGRGTLKHFKIDDVSVIHL---DIGDTVDNLEIVDVSSFTIFW 277 (418)
Q Consensus 205 L~l~~~~~~~~~~~-~P~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~~~~~~l---~i~~~~~~L~~l~l~~~~~~~ 277 (418)
|.+++..+..+... .++|++|++++|.+..+. ..+.++|+.+.+....+... .+...+++|++|++++.....
T Consensus 104 L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp EECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred EECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 55554333333322 456666666666543221 11234555555554433222 222345778888877654321
Q ss_pred HHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCccccc
Q 046555 278 PKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISD 357 (418)
Q Consensus 278 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d 357 (418)
- ......++|+.|++.+..+.. ... -...+++|++|+++++...+ ++..+.. +.+|+.+++..+.+..
T Consensus 184 ~---~~~~~l~~L~~L~Ls~N~l~~---l~~--~~~~l~~L~~L~L~~N~l~~-l~~~~~~---l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 184 V---KGQVVFAKLKTLDLSSNKLAF---MGP--EFQSAAGVTWISLRNNKLVL-IEKALRF---SQNLEHFDLRGNGFHC 251 (317)
T ss_dssp E---ECCCCCTTCCEEECCSSCCCE---ECG--GGGGGTTCSEEECTTSCCCE-ECTTCCC---CTTCCEEECTTCCCBH
T ss_pred c---ccccccccCCEEECCCCcCCc---chh--hhcccCcccEEECcCCcccc-hhhHhhc---CCCCCEEEccCCCccC
Confidence 1 112236778888776544331 111 13356788888888763332 2222333 3455566776665541
Q ss_pred chHHHHHHHHhcCcccceEEEe
Q 046555 358 LFSHWVEGLLKRCPNLRRLVIF 379 (418)
Q Consensus 358 ~~~~~l~~ll~~c~~Lk~L~i~ 379 (418)
..+...+..+++|+.|.+.
T Consensus 252 ---~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 252 ---GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp ---HHHHHHHHTCHHHHHHHHH
T ss_pred ---cCHHHHHhccccceEEECC
Confidence 1234445567777777665
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.90 E-value=5.2e-09 Score=99.98 Aligned_cols=225 Identities=13% Similarity=0.072 Sum_probs=116.7
Q ss_pred CCceEEEEe----ecCCCCccccccccccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccc
Q 046555 102 ETLRRLYYN----VRTTPNVNILEICGRQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIE 177 (418)
Q Consensus 102 ~~l~~L~l~----~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le 177 (418)
.++++|++. ...++. +. ..++|++|+|++|.+...+.....+++|+.|+|++..+. .+..-+..+++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~--l~---~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ--AF---RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC--GG---GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred cceeEEEccCCCchhcChh--hh---hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence 667777773 122222 22 247899999999887755445678899999999887765 2222367889999
Q ss_pred eeeecCCcccccccceeEEecCCcccEEEEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeec
Q 046555 178 ILELVSPEIAMLDAQVTVELTSPTLKSIYVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLD 257 (418)
Q Consensus 178 ~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~ 257 (418)
.|++++|...... +..+.... .....-..++|+.|++++|.+..+. -.
T Consensus 154 ~L~L~~n~~~~~~--------p~~~~~~~-----~~~~~~~l~~L~~L~L~~n~l~~lp-------------------~~ 201 (328)
T 4fcg_A 154 ELSIRACPELTEL--------PEPLASTD-----ASGEHQGLVNLQSLRLEWTGIRSLP-------------------AS 201 (328)
T ss_dssp EEEEEEETTCCCC--------CSCSEEEC------CCCEEESTTCCEEEEEEECCCCCC-------------------GG
T ss_pred EEECCCCCCcccc--------ChhHhhcc-----chhhhccCCCCCEEECcCCCcCcch-------------------Hh
Confidence 9999875432111 11111110 0111223667777777766542110 00
Q ss_pred cCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceeccccc
Q 046555 258 IGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQ 337 (418)
Q Consensus 258 i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~ 337 (418)
...+++|++|++++..... +...+..+++|+.|++.+..+... .......+++|++|+++++...+..+..+.
T Consensus 202 -l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 274 (328)
T 4fcg_A 202 -IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRN----YPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274 (328)
T ss_dssp -GGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCB----CCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred -hcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhh----hHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence 1134556666665544321 112345566677776655433211 011123456777777776543333333333
Q ss_pred CCCCcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEe
Q 046555 338 GSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIF 379 (418)
Q Consensus 338 ~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~ 379 (418)
+++ +|+.|++..+........ -+..+++|+.+.+.
T Consensus 275 ~l~---~L~~L~L~~n~~~~~iP~----~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 275 RLT---QLEKLDLRGCVNLSRLPS----LIAQLPANCIILVP 309 (328)
T ss_dssp GCT---TCCEEECTTCTTCCCCCG----GGGGSCTTCEEECC
T ss_pred cCC---CCCEEeCCCCCchhhccH----HHhhccCceEEeCC
Confidence 333 334455554332221111 13457777777764
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.90 E-value=1.8e-09 Score=111.70 Aligned_cols=232 Identities=19% Similarity=0.189 Sum_probs=151.1
Q ss_pred ccceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCccc
Q 046555 125 RQKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLK 203 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~ 203 (418)
.++|++|+|++|.+...++. ...+++|+.|+|++..+++.. ...+..+++|+.|++++|.+.... . -..++|+
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~----~~l~~L~ 195 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHVD-L----SLIPSLF 195 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCCSBCC-G----GGCTTCS
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCCCCcC-h----hhhhhhh
Confidence 48999999999988875543 468899999999987665321 112567899999999987653211 1 1136788
Q ss_pred EEEEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHh
Q 046555 204 SIYVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQM 283 (418)
Q Consensus 204 ~L~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~ 283 (418)
.|.+++..+..+ -..++|+.|++++|.+..+.....++|+.+.+....+........+++|+.|++++..... .....
T Consensus 196 ~L~l~~n~l~~l-~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~-~~~~~ 273 (597)
T 3oja_B 196 HANVSYNLLSTL-AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK-IMYHP 273 (597)
T ss_dssp EEECCSSCCSEE-ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE-EESGG
T ss_pred hhhcccCccccc-cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC-CCHHH
Confidence 888775544443 2356899999999887665544446788887776655444334467899999988765432 11234
Q ss_pred hhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHH
Q 046555 284 ISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWV 363 (418)
Q Consensus 284 l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l 363 (418)
+..+++|+.|.+.+..+.. .......+|+|++|+++++...+ ++..+.. +.+|+.|++..+.+....
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~---l~~L~~L~L~~N~l~~~~---- 340 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-----LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQ---FDRLENLYLDHNSIVTLK---- 340 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-----EECSSSCCTTCCEEECCSSCCCC-CGGGHHH---HTTCSEEECCSSCCCCCC----
T ss_pred hcCccCCCEEECCCCCCCC-----CCcccccCCCCcEEECCCCCCCc-cCccccc---CCCCCEEECCCCCCCCcC----
Confidence 5667889999887654331 11122357899999998864332 1112222 345556777766665532
Q ss_pred HHHHhcCcccceEEEee
Q 046555 364 EGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 364 ~~ll~~c~~Lk~L~i~~ 380 (418)
+..+++|+.|.|.+
T Consensus 341 ---~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 341 ---LSTHHTLKNLTLSH 354 (597)
T ss_dssp ---CCTTCCCSEEECCS
T ss_pred ---hhhcCCCCEEEeeC
Confidence 45689999999964
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.90 E-value=2.7e-09 Score=107.07 Aligned_cols=238 Identities=14% Similarity=0.084 Sum_probs=130.8
Q ss_pred CCceEEEEe---e-cCCCCccccccccccceeEEEEeceEecCC-CCCCccccccceeEEeeEEecHHHHHHHHHcCccc
Q 046555 102 ETLRRLYYN---V-RTTPNVNILEICGRQKLEVLALAHNTITGV-EPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKI 176 (418)
Q Consensus 102 ~~l~~L~l~---~-~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~-~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~L 176 (418)
.+++.|++. . ..++. .+. .+++|++|+|++|.+... ......+++|+.|+|++..+....- ..+.++++|
T Consensus 80 ~~L~~L~L~~n~l~~~~~~--~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 154 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLG--VFT--GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSL 154 (477)
T ss_dssp TTCCEEECCSSCCCSCCTT--SST--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTC
T ss_pred ccCCEEECCCCcCCccCcc--ccc--CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCC
Confidence 677888883 1 12222 222 247888888888876553 2345677888888887754432111 124578888
Q ss_pred ceeeecCCcccccccceeEEecCCcccEEEEEeeccceEE----EeCCCccEEEeecccee-eEE--EecCCceeEEEec
Q 046555 177 EILELVSPEIAMLDAQVTVELTSPTLKSIYVEAISLDKFI----LEADSIERLHLKDCALE-LFE--LVGRGTLKHFKID 249 (418)
Q Consensus 177 e~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~~----~~~P~L~~L~l~~~~~~-~~~--~~~~~~L~~l~l~ 249 (418)
+.|++.+|.+...... .--..++|+.|.+....+..+. ...++|++|++++|... .+. .....+|+.+.+.
T Consensus 155 ~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTE--ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp CEEEEESCCCSSCCHH--HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CEEECCCCcCcccChh--HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 8888888654321100 0012367888888754443322 23678888888876532 111 1122367777776
Q ss_pred ceeEEeec--cCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeec
Q 046555 250 DVSVIHLD--IGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDL 327 (418)
Q Consensus 250 ~~~~~~l~--i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~ 327 (418)
...+..+. ....+++|+.|++++..... .....+..+++|+.|.+.+..+... .. .....+++|++|+++++.
T Consensus 233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~---~~-~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVV---EP-YAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp SSCCCSCCHHHHTTCTTCCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEE---CT-TTBTTCTTCCEEECCSSC
T ss_pred CCcccccCHHHhcCccccCeeECCCCcCCc-cChhhccccccCCEEECCCCccceE---CH-HHhcCcccCCEEECCCCc
Confidence 65443322 12357888888888654321 1112345677888888765433211 11 123356788888888764
Q ss_pred ccceecccccCCCCcceEEEEecCCcc
Q 046555 328 KDGVLHYGLQGSANLENVAVLELGWPV 354 (418)
Q Consensus 328 ~~~~l~~~l~~~~~Le~l~vl~l~~~~ 354 (418)
..+.-...+..++. |+.+++..+.
T Consensus 308 l~~~~~~~~~~l~~---L~~L~l~~N~ 331 (477)
T 2id5_A 308 LTTLEESVFHSVGN---LETLILDSNP 331 (477)
T ss_dssp CSCCCGGGBSCGGG---CCEEECCSSC
T ss_pred CceeCHhHcCCCcc---cCEEEccCCC
Confidence 33222223344444 4445565443
No 22
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.89 E-value=2.9e-11 Score=120.74 Aligned_cols=273 Identities=16% Similarity=0.131 Sum_probs=168.0
Q ss_pred CCceEEEEee-cCCC----Cc-cccccccccceeEEEEeceEecCC--CCCCcccc----ccceeEEeeEEecHH---HH
Q 046555 102 ETLRRLYYNV-RTTP----NV-NILEICGRQKLEVLALAHNTITGV--EPNFQRFP----CLKSLSLSYVSISAL---DL 166 (418)
Q Consensus 102 ~~l~~L~l~~-~~~~----~~-~~~~~~~~~~L~~L~L~~~~l~~~--~~~~~~~p----~L~~L~L~~v~~~~~---~l 166 (418)
++++.|++.. .... .+ ..+ ..+++|++|+|++|.+.+. ......++ +|++|+|+++.+++. .+
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSAL--RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHH--HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHH--HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 8999999951 1111 00 112 1248999999999987651 11122344 799999999998874 45
Q ss_pred HHHHHcCcccceeeecCCcccccccceeE----EecCCcccEEEEEeeccce--------EEEeCCCccEEEeeccceee
Q 046555 167 SLLLTACQKIEILELVSPEIAMLDAQVTV----ELTSPTLKSIYVEAISLDK--------FILEADSIERLHLKDCALEL 234 (418)
Q Consensus 167 ~~ll~~cp~Le~L~l~~~~~~~~~~~~~~----~i~~~~L~~L~l~~~~~~~--------~~~~~P~L~~L~l~~~~~~~ 234 (418)
...+..||+|+.|++++|.+.. .+...+ .-..++|+.|.+++..+.. ..-..|+|++|++++|.+..
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGD-AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHccCCceeEEECCCCcCch-HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 5667899999999999976531 111111 1113579999988543321 11236999999999987542
Q ss_pred EE--Ee------cCCceeEEEecceeEEee------ccCCCcCCceeEEeeccccchHHHH---H-hhhcCCCccEEEEc
Q 046555 235 FE--LV------GRGTLKHFKIDDVSVIHL------DIGDTVDNLEIVDVSSFTIFWPKFY---Q-MISRSSKLKKLRLW 296 (418)
Q Consensus 235 ~~--~~------~~~~L~~l~l~~~~~~~l------~i~~~~~~L~~l~l~~~~~~~~~~~---~-~l~~~~~L~~L~L~ 296 (418)
.. .+ ..++|+.+.+....+... .....+++|+++++++......... . .....++|+.|++.
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 11 11 135788888876654321 1112468999999998764332221 1 22357899999987
Q ss_pred ccccCccccccHhHHhhcCCCCceeeeeeecccce-ec---cc-ccCCCCcceEEEEecCCcccccchHHHHHHHHhcCc
Q 046555 297 DVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGV-LH---YG-LQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCP 371 (418)
Q Consensus 297 ~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~-l~---~~-l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~ 371 (418)
+..+.......+......+++|++|+++++...+. .. .. ..+.+ +|+.|++..+.+++.....+...+..++
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~---~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 341 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC---QLESLWVKSCSFTAACCSHFSSVLAQNR 341 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC---CCCEEECTTSCCBGGGHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCc---cceeeEcCCCCCchHHHHHHHHHHhhCC
Confidence 76544222112333344589999999998643211 11 11 11223 4556778877777654444556677899
Q ss_pred ccceEEEee
Q 046555 372 NLRRLVIFG 380 (418)
Q Consensus 372 ~Lk~L~i~~ 380 (418)
+|+.|.+.+
T Consensus 342 ~L~~L~Ls~ 350 (461)
T 1z7x_W 342 FLLELQISN 350 (461)
T ss_dssp SCCEEECCS
T ss_pred CccEEEccC
Confidence 999999964
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.88 E-value=4.8e-10 Score=115.98 Aligned_cols=192 Identities=18% Similarity=0.226 Sum_probs=124.6
Q ss_pred ceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 127 KLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 127 ~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
+|+.|++++|.+.+..+ ....+++|+.|+|++..++. +..-+..+++|+.|++++|.+...... .--..++|+.|
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L 330 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQI--SASNFPSLTHL 330 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGG--CGGGCTTCSEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchh--hhhccCcCCEE
Confidence 79999999998877544 36778999999999877652 211256799999999999765322111 01124789999
Q ss_pred EEEeeccc-eE----EEeCCCccEEEeeccceeeEE-----EecCCceeEEEecceeEEee--ccCCCcCCceeEEeecc
Q 046555 206 YVEAISLD-KF----ILEADSIERLHLKDCALELFE-----LVGRGTLKHFKIDDVSVIHL--DIGDTVDNLEIVDVSSF 273 (418)
Q Consensus 206 ~l~~~~~~-~~----~~~~P~L~~L~l~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~l--~i~~~~~~L~~l~l~~~ 273 (418)
.+.+..+. .+ .-..|+|++|++++|.+.... ..+.++|+.+.+....+... .....+++|+.+++++.
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 98854322 11 123789999999999876554 23447888888877655433 22346789999999876
Q ss_pred ccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeee
Q 046555 274 TIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 274 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~ 326 (418)
..........+..+++|+.|++.+...... .......+++|++|.++.+
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDIS----SEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTT----CTTTTTTCTTCCEEECTTC
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCc----CHHHHhCCCCCCEEECCCC
Confidence 543211112356678999999876543211 0111234566777766654
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.88 E-value=9.7e-10 Score=110.91 Aligned_cols=228 Identities=12% Similarity=0.126 Sum_probs=125.1
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
++|++|+|++|.+.+..+ ....+++|+.|+|++..+++.. . +..+|+|+.|++++|.+. .+. ..++|+.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~------~l~-~~~~L~~ 103 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYVQ------ELL-VGPSIET 103 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSSEEE------EEE-ECTTCCE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCCcCC------CCC-CCCCcCE
Confidence 567777777776666432 3456677777777665543211 0 556777777777765432 111 2366777
Q ss_pred EEEEeeccceEEEe-CCCccEEEeeccceeeE---EEecCCceeEEEecceeEEee---ccCCCcCCceeEEeeccccch
Q 046555 205 IYVEAISLDKFILE-ADSIERLHLKDCALELF---ELVGRGTLKHFKIDDVSVIHL---DIGDTVDNLEIVDVSSFTIFW 277 (418)
Q Consensus 205 L~l~~~~~~~~~~~-~P~L~~L~l~~~~~~~~---~~~~~~~L~~l~l~~~~~~~l---~i~~~~~~L~~l~l~~~~~~~ 277 (418)
|.+++..+..+... .|+|+.|++++|.+... ...+.++|+.+.+....+... .++..+++|+.|++++.....
T Consensus 104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred EECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 77665544443333 46777777777765432 112335666666665443221 233356788888887765432
Q ss_pred HHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCccccc
Q 046555 278 PKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISD 357 (418)
Q Consensus 278 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d 357 (418)
. ......++|+.|++.+..+.. ... -...+++|+.|+++++...+ ++..+.. +.+++.+++..+.+..
T Consensus 184 ~---~~~~~l~~L~~L~Ls~N~l~~---~~~--~~~~l~~L~~L~Ls~N~l~~-lp~~l~~---l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 184 V---KGQVVFAKLKTLDLSSNKLAF---MGP--EFQSAAGVTWISLRNNKLVL-IEKALRF---SQNLEHFDLRGNGFHC 251 (487)
T ss_dssp E---ECCCCCTTCCEEECCSSCCCE---ECG--GGGGGTTCSEEECTTSCCCE-ECTTCCC---CTTCCEEECTTCCBCH
T ss_pred c---cccccCCCCCEEECCCCCCCC---CCH--hHcCCCCccEEEecCCcCcc-cchhhcc---CCCCCEEEcCCCCCcC
Confidence 1 112346788888876544331 111 13356789999888764332 2222333 3445556676555541
Q ss_pred chHHHHHHHHhcCcccceEEE
Q 046555 358 LFSHWVEGLLKRCPNLRRLVI 378 (418)
Q Consensus 358 ~~~~~l~~ll~~c~~Lk~L~i 378 (418)
..+...+..++.|+.+.+
T Consensus 252 ---~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 252 ---GTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp ---HHHHHHHTTCHHHHHHHH
T ss_pred ---cchHHHHHhCCCCcEEec
Confidence 123333445566655555
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.87 E-value=1.2e-09 Score=116.32 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=74.0
Q ss_pred CCceEEEEe---e--cCCCCccccccccccceeEEEEeceEecCCCCC--CccccccceeEEeeEEecHHHHH--HHHHc
Q 046555 102 ETLRRLYYN---V--RTTPNVNILEICGRQKLEVLALAHNTITGVEPN--FQRFPCLKSLSLSYVSISALDLS--LLLTA 172 (418)
Q Consensus 102 ~~l~~L~l~---~--~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~--~~~~p~L~~L~L~~v~~~~~~l~--~ll~~ 172 (418)
.+++.|++. . ..+....+ ..+++|++|+|++|.+.+..+. ...+++|++|+|+++.+++.... ..+..
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l---~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSL---GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGG---GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred CCCCEEECCCCcCCCcCCChHHH---hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 577888873 1 11220002 2347899999999988764332 26789999999988877643222 23678
Q ss_pred CcccceeeecCCcccccccceeEEecCCcccEEEEEeeccce---EEEeCCCccEEEeeccce
Q 046555 173 CQKIEILELVSPEIAMLDAQVTVELTSPTLKSIYVEAISLDK---FILEADSIERLHLKDCAL 232 (418)
Q Consensus 173 cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~---~~~~~P~L~~L~l~~~~~ 232 (418)
|++|+.|++++|.+...... -..++|+.|+++...+.. ..-..++|++|++++|.+
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235 (768)
T ss_dssp CTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCC
T ss_pred CCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcC
Confidence 89999999988765321111 224567777776432211 112256666666666654
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.86 E-value=3.3e-09 Score=109.68 Aligned_cols=150 Identities=11% Similarity=0.068 Sum_probs=68.0
Q ss_pred CCCccEEEeeccceeeEE----EecCCceeEEEecceeEEee--ccCCCcCCceeEEeeccccchHHHHHhhhcCCCccE
Q 046555 219 ADSIERLHLKDCALELFE----LVGRGTLKHFKIDDVSVIHL--DIGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKK 292 (418)
Q Consensus 219 ~P~L~~L~l~~~~~~~~~----~~~~~~L~~l~l~~~~~~~l--~i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~ 292 (418)
.++|+.|++++|.+.... ..+.++|+.+.+....+... .....+++|+++++++...........+..+++|+.
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence 355555555555433211 11224455555544333221 111244566666665544322111223344566666
Q ss_pred EEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHHHHHHhcCc-
Q 046555 293 LRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCP- 371 (418)
Q Consensus 293 L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~- 371 (418)
|++.+..+... . ......+++|++|.++++...+.....+.+++ .|+.|++..+.++..... +...+
T Consensus 478 L~Ls~n~l~~~---~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---~L~~L~l~~N~l~~~p~~-----~~~l~~ 545 (606)
T 3vq2_A 478 LDLSKCQLEQI---S-WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY---SLSTLDCSFNRIETSKGI-----LQHFPK 545 (606)
T ss_dssp EECTTSCCCEE---C-TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT---TCCEEECTTSCCCCEESC-----GGGSCT
T ss_pred EECCCCcCCcc---C-hhhhcccccCCEEECCCCcCCCcCHHHccCCC---cCCEEECCCCcCcccCHh-----Hhhhcc
Confidence 66654432210 0 01123456777777776644333333333333 444566666555543211 33454
Q ss_pred ccceEEEee
Q 046555 372 NLRRLVIFG 380 (418)
Q Consensus 372 ~Lk~L~i~~ 380 (418)
+|+.|.+.+
T Consensus 546 ~L~~l~l~~ 554 (606)
T 3vq2_A 546 SLAFFNLTN 554 (606)
T ss_dssp TCCEEECCS
T ss_pred cCcEEEccC
Confidence 588888754
No 27
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.85 E-value=1.1e-10 Score=111.60 Aligned_cols=218 Identities=17% Similarity=0.184 Sum_probs=136.3
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++++.|+++++.+.+..+....+++|+.|+|+++.+++..+..++..||+|+.|++++|.+.. .....+ -..++|+.|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l-~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTL-AKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHH-TTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHH-hcCCCCCEE
Confidence 678889998888877555566788899999988888887788888899999999998875421 111111 124788888
Q ss_pred EEEee-ccc-----eEEEeCCCccEEEeecc-ceeeEEEecCCceeEEEecceeEEeeccCCCcC-CceeEEeeccc--c
Q 046555 206 YVEAI-SLD-----KFILEADSIERLHLKDC-ALELFELVGRGTLKHFKIDDVSVIHLDIGDTVD-NLEIVDVSSFT--I 275 (418)
Q Consensus 206 ~l~~~-~~~-----~~~~~~P~L~~L~l~~~-~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~-~L~~l~l~~~~--~ 275 (418)
+++++ .+. .+.-.+|+|++|++++| .+.. .++ ......++ +|++|+++++. .
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~----------------~~~--~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE----------------KHV--QVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH----------------HHH--HHHHHHSCTTCCEEECCSCGGGS
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh----------------HHH--HHHHHhcccCCCEEEeCCCcccC
Confidence 88754 222 22334899999999998 5421 000 01122467 88999988874 2
Q ss_pred chHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeec--ccceecccccCCCCcceEEEEecCCc
Q 046555 276 FWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDL--KDGVLHYGLQGSANLENVAVLELGWP 353 (418)
Q Consensus 276 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~--~~~~l~~~l~~~~~Le~l~vl~l~~~ 353 (418)
....+...+..+++|+.|++.++....+. .+.. ...+++|++|+++++. .+..+ ..+..+++ |+.|++..+
T Consensus 210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--~~~~-l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~---L~~L~l~~~ 282 (336)
T 2ast_B 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKND--CFQE-FFQLNYLQHLSLSRCYDIIPETL-LELGEIPT---LKTLQVFGI 282 (336)
T ss_dssp CHHHHHHHHHHCTTCSEEECTTCTTCCGG--GGGG-GGGCTTCCEEECTTCTTCCGGGG-GGGGGCTT---CCEEECTTS
T ss_pred CHHHHHHHHhhCCCCCEEeCCCCCcCCHH--HHHH-HhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCC---CCEEeccCc
Confidence 22344556678899999998776522111 1222 2456999999998873 12111 12344454 455666555
Q ss_pred ccccchHHHHHHHHhcCcccc
Q 046555 354 VISDLFSHWVEGLLKRCPNLR 374 (418)
Q Consensus 354 ~~~d~~~~~l~~ll~~c~~Lk 374 (418)
+++. .+..+.+.++.|+
T Consensus 283 -i~~~---~~~~l~~~l~~L~ 299 (336)
T 2ast_B 283 -VPDG---TLQLLKEALPHLQ 299 (336)
T ss_dssp -SCTT---CHHHHHHHSTTSE
T ss_pred -cCHH---HHHHHHhhCcceE
Confidence 5542 2344444455554
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.82 E-value=9.1e-09 Score=106.34 Aligned_cols=236 Identities=16% Similarity=0.138 Sum_probs=146.5
Q ss_pred ccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 125 RQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
.++|+.|+++++.+.... ....+++|++|++.++.+.. +..+ .+|.|+.|++.+|........ ...++|+.
T Consensus 284 l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~----~~l~~L~~ 354 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKK----VALPSLSY 354 (606)
T ss_dssp GTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCC----CCCTTCCE
T ss_pred CCCCCEEEecCccchhhh-hccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhh----ccCCCCCE
Confidence 378888888888776543 45677888888888877632 2233 788888888887633211111 13477888
Q ss_pred EEEEeeccceEE------EeCCCccEEEeeccceeeEE--EecCCceeEEEecceeEEee---ccCCCcCCceeEEeecc
Q 046555 205 IYVEAISLDKFI------LEADSIERLHLKDCALELFE--LVGRGTLKHFKIDDVSVIHL---DIGDTVDNLEIVDVSSF 273 (418)
Q Consensus 205 L~l~~~~~~~~~------~~~P~L~~L~l~~~~~~~~~--~~~~~~L~~l~l~~~~~~~l---~i~~~~~~L~~l~l~~~ 273 (418)
|++++..+.... ...|+|++|++++|.+..+. ..+.++|+.+.+....+... .....+++|+.++++++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 888755443332 23688999999888765443 22346788888877665443 22346788899988876
Q ss_pred ccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCc
Q 046555 274 TIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWP 353 (418)
Q Consensus 274 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~ 353 (418)
.... .....+..+++|+.|++.+..+.+.. .......+++|++|+++++...+.....+.++ .+|+.|++..+
T Consensus 435 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N 507 (606)
T 3vq2_A 435 NTKI-DFDGIFLGLTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQISWGVFDTL---HRLQLLNMSHN 507 (606)
T ss_dssp CCEE-CCTTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTTTTTC---TTCCEEECCSS
T ss_pred CCCc-cchhhhcCCCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCccChhhhccc---ccCCEEECCCC
Confidence 5432 11233566788998888665432110 11123456889999998875444333334444 45556777777
Q ss_pred ccccchHHHHHHHHhcCcccceEEEee
Q 046555 354 VISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 354 ~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
.+.+... .-+..+++|+.|.|.+
T Consensus 508 ~l~~~~~----~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 508 NLLFLDS----SHYNQLYSLSTLDCSF 530 (606)
T ss_dssp CCSCEEG----GGTTTCTTCCEEECTT
T ss_pred cCCCcCH----HHccCCCcCCEEECCC
Confidence 6665422 2235689999999853
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.82 E-value=3.1e-09 Score=106.32 Aligned_cols=157 Identities=14% Similarity=0.175 Sum_probs=81.2
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEe-cCCcccE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVEL-TSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i-~~~~L~~ 204 (418)
++|++|++++|.+.+.. ...+++|+.|+|++..+++-. +..+++|+.|.+++|.+..- .+ ..++|+.
T Consensus 85 ~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l------~l~~l~~L~~ 152 (457)
T 3bz5_A 85 TNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEI------DVSHNTQLTE 152 (457)
T ss_dssp TTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCC------CCTTCTTCCE
T ss_pred CCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCcccee------ccccCCcCCE
Confidence 56666666666555431 445566666666655544321 44566666666665543211 11 1245555
Q ss_pred EEEEee-ccceEEE-eCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHH
Q 046555 205 IYVEAI-SLDKFIL-EADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQ 282 (418)
Q Consensus 205 L~l~~~-~~~~~~~-~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~ 282 (418)
|.++.. ....+.+ ..++|+.|++++|.+..+..-..++|+.+.+....+..++++ .+++|+.+++++..... ..
T Consensus 153 L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~-~l~~L~~L~Ls~N~l~~---ip 228 (457)
T 3bz5_A 153 LDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLN-QNIQLTFLDCSSNKLTE---ID 228 (457)
T ss_dssp EECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCT-TCTTCSEEECCSSCCSC---CC
T ss_pred EECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccc-cCCCCCEEECcCCcccc---cC
Confidence 555532 1122212 246677777776666554433445666666655443333332 45677777776654332 11
Q ss_pred hhhcCCCccEEEEcccc
Q 046555 283 MISRSSKLKKLRLWDVV 299 (418)
Q Consensus 283 ~l~~~~~L~~L~L~~~~ 299 (418)
+..+++|+.|++.+..
T Consensus 229 -~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp -CTTCTTCSEEECCSSC
T ss_pred -ccccCCCCEEEeeCCc
Confidence 4456677777665443
No 30
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.82 E-value=1.9e-10 Score=112.34 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=24.1
Q ss_pred cccccceeEEeeEEecHH---HHHHHHHcCcccceeeecCCcc
Q 046555 147 RFPCLKSLSLSYVSISAL---DLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 147 ~~p~L~~L~L~~v~~~~~---~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
.+++|+.|+|++..+++. .+...+..||+|+.|+|++|.+
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 456667777766666543 2334456667777777766543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.82 E-value=4.4e-09 Score=105.24 Aligned_cols=241 Identities=15% Similarity=0.181 Sum_probs=155.0
Q ss_pred CCceEEEEe---ecCCCCccccccccccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccce
Q 046555 102 ETLRRLYYN---VRTTPNVNILEICGRQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEI 178 (418)
Q Consensus 102 ~~l~~L~l~---~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~ 178 (418)
+++++|++. ....+. + ..+++|++|+|++|.+.+.. ...+++|+.|+|++..+++.. +..+++|+.
T Consensus 42 ~~L~~L~Ls~n~l~~~~~--l---~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTG--I---EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD----VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCCTT--G---GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC----CTTCTTCCE
T ss_pred CCCCEEEccCCCcccChh--h---cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee----cCCCCcCCE
Confidence 678888884 221122 2 23489999999999888752 677899999999988776532 568999999
Q ss_pred eeecCCcccccccceeEEe-cCCcccEEEEEeeccceEEEe-CCCccEEEeeccc-eeeEEEecCCceeEEEecceeEEe
Q 046555 179 LELVSPEIAMLDAQVTVEL-TSPTLKSIYVEAISLDKFILE-ADSIERLHLKDCA-LELFELVGRGTLKHFKIDDVSVIH 255 (418)
Q Consensus 179 L~l~~~~~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~-~P~L~~L~l~~~~-~~~~~~~~~~~L~~l~l~~~~~~~ 255 (418)
|++++|.+..- .+ ..++|+.|.++...+..+.+. .++|++|++++|. ...+.....++|+.+.+....+..
T Consensus 111 L~L~~N~l~~l------~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 111 LNCDTNKLTKL------DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp EECCSSCCSCC------CCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred EECCCCcCCee------cCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence 99998765321 12 236888888886544443333 6899999999883 333444455778888877765555
Q ss_pred eccCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceeccc
Q 046555 256 LDIGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYG 335 (418)
Q Consensus 256 l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~ 335 (418)
+++ ..+++|+.+++++...... -+..+++|+.|++.+..+.+ .. ...+++|+.|.++++...+. .
T Consensus 185 l~l-~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~---ip----~~~l~~L~~L~l~~N~l~~~---~ 249 (457)
T 3bz5_A 185 LDV-SQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTE---ID----VTPLTQLTYFDCSVNPLTEL---D 249 (457)
T ss_dssp CCC-TTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSC---CC----CTTCTTCSEEECCSSCCSCC---C
T ss_pred ecc-ccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccc---cC----ccccCCCCEEEeeCCcCCCc---C
Confidence 553 3678899998887654321 25667889998887654432 11 34568899999987643332 1
Q ss_pred ccCCCCcceE-------EEEecCCcc-cccchHHHHHHHHhcCcccceEEEeee
Q 046555 336 LQGSANLENV-------AVLELGWPV-ISDLFSHWVEGLLKRCPNLRRLVIFGV 381 (418)
Q Consensus 336 l~~~~~Le~l-------~vl~l~~~~-~~d~~~~~l~~ll~~c~~Lk~L~i~~~ 381 (418)
...++.|+.+ +.+++..+. .+... ...|++|+.|.+.+.
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-------AEGCRKIKELDVTHN 296 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-------CTTCTTCCCCCCTTC
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc-------ccccccCCEEECCCC
Confidence 2334444422 233333222 12211 246899999998643
No 32
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.81 E-value=2.3e-10 Score=111.85 Aligned_cols=238 Identities=18% Similarity=0.122 Sum_probs=120.3
Q ss_pred ccceeEEEEeceEecCCC-----CCCccccccceeEEeeEEec------HHH---HHHHHHcCcccceeeecCCcccccc
Q 046555 125 RQKLEVLALAHNTITGVE-----PNFQRFPCLKSLSLSYVSIS------ALD---LSLLLTACQKIEILELVSPEIAMLD 190 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~-----~~~~~~p~L~~L~L~~v~~~------~~~---l~~ll~~cp~Le~L~l~~~~~~~~~ 190 (418)
+++|++|+|++|.+.+.. .....+++|+.|+|+++.+. +.. +...+..+++|+.|+|++|.+.. .
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~ 109 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-T 109 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT-T
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH-H
Confidence 478999999999887621 12456899999999887432 123 33445789999999999876532 1
Q ss_pred cceeE---EecCCcccEEEEEeeccce--------EEEeC---------CCccEEEeeccceeeEEEecCCceeEEEecc
Q 046555 191 AQVTV---ELTSPTLKSIYVEAISLDK--------FILEA---------DSIERLHLKDCALELFELVGRGTLKHFKIDD 250 (418)
Q Consensus 191 ~~~~~---~i~~~~L~~L~l~~~~~~~--------~~~~~---------P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~ 250 (418)
+...+ --..++|+.|.+++..+.. ..... |+|++|++++|.+...
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~--------------- 174 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG--------------- 174 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG---------------
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH---------------
Confidence 11100 0134778888877543221 00111 7888888887754210
Q ss_pred eeEEee-ccCCCcCCceeEEeeccccchHH---HHH-hhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeee
Q 046555 251 VSVIHL-DIGDTVDNLEIVDVSSFTIFWPK---FYQ-MISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSY 325 (418)
Q Consensus 251 ~~~~~l-~i~~~~~~L~~l~l~~~~~~~~~---~~~-~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~ 325 (418)
++..+ .....+++|+.|+++++...... +.. .+..+++|+.|++.+..+.......+......+++|++|.+++
T Consensus 175 -~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 175 -SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp -GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred -HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 00000 00013456666666655443221 222 4455666666666543321110011222233456666666665
Q ss_pred ecccce----ecccccCCCCcceEEEEecCCcccccchHHHHH-HHHhcCcccceEEEee
Q 046555 326 DLKDGV----LHYGLQGSANLENVAVLELGWPVISDLFSHWVE-GLLKRCPNLRRLVIFG 380 (418)
Q Consensus 326 ~~~~~~----l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~-~ll~~c~~Lk~L~i~~ 380 (418)
+...+. +...+.. ..+.+|+.|++.++.+++.....+. .+..++++|+.|.+.+
T Consensus 254 n~i~~~~~~~l~~~l~~-~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSK-LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp CCCCHHHHHHHHHHHHT-CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred CCCchhhHHHHHHHHhh-ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 532211 1111111 1123344455665555542111122 2224567777777753
No 33
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.81 E-value=4.9e-10 Score=108.57 Aligned_cols=96 Identities=13% Similarity=0.137 Sum_probs=54.9
Q ss_pred CCceeEEeeccccch---HHHHHhhhc-CCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeec----ccceecc
Q 046555 263 DNLEIVDVSSFTIFW---PKFYQMISR-SSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDL----KDGVLHY 334 (418)
Q Consensus 263 ~~L~~l~l~~~~~~~---~~~~~~l~~-~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~----~~~~l~~ 334 (418)
++|++|++++..... ..+...+.. .++|+.|++.+..+.+.....+..+...+++|++|.++++. .+.....
T Consensus 196 ~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~ 275 (362)
T 3goz_A 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHH
T ss_pred CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHH
Confidence 478888887765432 123333434 45888888766544322222223334556788888888763 1112223
Q ss_pred cccCCCCcceEEEEecCCcccccc
Q 046555 335 GLQGSANLENVAVLELGWPVISDL 358 (418)
Q Consensus 335 ~l~~~~~Le~l~vl~l~~~~~~d~ 358 (418)
+....+.+++|+.+++..+.+.+.
T Consensus 276 l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 276 LGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHhccCCceEEEecCCCcCCCc
Confidence 344556777888888877766654
No 34
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.80 E-value=3.3e-09 Score=101.36 Aligned_cols=206 Identities=16% Similarity=0.130 Sum_probs=127.0
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++++.|+|+++.+...++....+++|+.|+|++..+. .+..-+..+++|+.|++++|.+. .+ ++.+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~--------~l-p~~l--- 146 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR--------AL-PASI--- 146 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC--------CC-CGGG---
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc--------cC-cHHH---
Confidence 7899999999988776555667999999999988765 22233578999999999986542 01 1111
Q ss_pred EEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhhh
Q 046555 206 YVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMIS 285 (418)
Q Consensus 206 ~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~ 285 (418)
...++|++|++++|..... +. ..+....+. .....+++|++|++++.... .+...+.
T Consensus 147 -----------~~l~~L~~L~L~~n~~~~~--~p-~~~~~~~~~-------~~~~~l~~L~~L~L~~n~l~--~lp~~l~ 203 (328)
T 4fcg_A 147 -----------ASLNRLRELSIRACPELTE--LP-EPLASTDAS-------GEHQGLVNLQSLRLEWTGIR--SLPASIA 203 (328)
T ss_dssp -----------GGCTTCCEEEEEEETTCCC--CC-SCSEEEC-C-------CCEEESTTCCEEEEEEECCC--CCCGGGG
T ss_pred -----------hcCcCCCEEECCCCCCccc--cC-hhHhhccch-------hhhccCCCCCEEECcCCCcC--cchHhhc
Confidence 1246788888887643100 00 000000000 00124688899988876543 2223467
Q ss_pred cCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHHHH
Q 046555 286 RSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEG 365 (418)
Q Consensus 286 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ 365 (418)
.+++|+.|++.+..+.. ...-...+++|++|+++++...+.....+.+++ +|+.|++..+........
T Consensus 204 ~l~~L~~L~L~~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~---~L~~L~L~~n~~~~~~p~---- 271 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLSA-----LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA---PLKRLILKDCSNLLTLPL---- 271 (328)
T ss_dssp GCTTCCEEEEESSCCCC-----CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC---CCCEEECTTCTTCCBCCT----
T ss_pred CCCCCCEEEccCCCCCc-----CchhhccCCCCCEEECcCCcchhhhHHHhcCCC---CCCEEECCCCCchhhcch----
Confidence 78999999997765442 111234678999999998755444444444444 455566765433322211
Q ss_pred HHhcCcccceEEEee
Q 046555 366 LLKRCPNLRRLVIFG 380 (418)
Q Consensus 366 ll~~c~~Lk~L~i~~ 380 (418)
-+.++++|+.|.|.+
T Consensus 272 ~~~~l~~L~~L~L~~ 286 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRG 286 (328)
T ss_dssp TGGGCTTCCEEECTT
T ss_pred hhhcCCCCCEEeCCC
Confidence 145799999999975
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.79 E-value=1.5e-09 Score=104.61 Aligned_cols=173 Identities=19% Similarity=0.238 Sum_probs=91.6
Q ss_pred CCceEEEEe---e-cCCCCccccccccccceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCccc
Q 046555 102 ETLRRLYYN---V-RTTPNVNILEICGRQKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKI 176 (418)
Q Consensus 102 ~~l~~L~l~---~-~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~L 176 (418)
+++++|++. . ..++. .+ ..+++|++|+|++|.+.+..+ ....+++|++|+|++..+++-. ...+..+++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~--~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNS--DL--QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTSCCCEECTT--TT--TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTC
T ss_pred ccCcEEECCCCcCcccCHH--Hh--ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccC
Confidence 467888873 1 11221 11 224788888888887766433 3567788888888887665321 2235678889
Q ss_pred ceeeecCCcccccccceeEEecCCcccEEEEEee-ccceEE----EeCCCccEEEeeccceeeEEEecCCceeEEEecce
Q 046555 177 EILELVSPEIAMLDAQVTVELTSPTLKSIYVEAI-SLDKFI----LEADSIERLHLKDCALELFELVGRGTLKHFKIDDV 251 (418)
Q Consensus 177 e~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~-~~~~~~----~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~ 251 (418)
+.|++++|.+..-.... .--..++|+.|.+++. .+..+. ...++|++|++++|.+....
T Consensus 127 ~~L~L~~n~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------- 190 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE--------------- 190 (353)
T ss_dssp SEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC---------------
T ss_pred CEEECCCCCCcccCchh-hhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC---------------
Confidence 99988887553211100 0012356666666643 222221 12456666666665443210
Q ss_pred eEEeeccCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEccccc
Q 046555 252 SVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVF 300 (418)
Q Consensus 252 ~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 300 (418)
......+++|+++++++..... .....+...++|+.|++.+..+
T Consensus 191 ----~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 191 ----PKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp ----TTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBC
T ss_pred ----HHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCcc
Confidence 0111235566666666544311 1111233456777776655433
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.79 E-value=5.2e-09 Score=98.62 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=63.5
Q ss_pred cceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHH-HHHHHHcCcccceeeecCCcccccccceeEEecCCccc
Q 046555 126 QKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALD-LSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLK 203 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~-l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~ 203 (418)
++|++|+|++|.+....+. ...+++|+.|+|++..++..+ ...-..++++|+.|++++|.+.. ....-...++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~---l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---MSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE---EEEEEETCTTCC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc---ChhhcCCCCCCC
Confidence 6899999999988765443 468899999999887665211 11123468999999999875421 111111245666
Q ss_pred EEEEEeeccce-----EEEeCCCccEEEeeccce
Q 046555 204 SIYVEAISLDK-----FILEADSIERLHLKDCAL 232 (418)
Q Consensus 204 ~L~l~~~~~~~-----~~~~~P~L~~L~l~~~~~ 232 (418)
.|.+++..+.. .....++|++|++++|.+
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 138 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcC
Confidence 66665321111 111246677777766654
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.79 E-value=2.4e-09 Score=106.57 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=79.7
Q ss_pred CCceEEEEe---e-cCCCCccccccccccceeEEEEeceEecC-C-CCCCccccccceeEEeeEEecHHHHHHHHHcCcc
Q 046555 102 ETLRRLYYN---V-RTTPNVNILEICGRQKLEVLALAHNTITG-V-EPNFQRFPCLKSLSLSYVSISALDLSLLLTACQK 175 (418)
Q Consensus 102 ~~l~~L~l~---~-~~~~~~~~~~~~~~~~L~~L~L~~~~l~~-~-~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~ 175 (418)
+++++|++. . ..++. .+ ..+++|++|+|++|.+.. . ......+++|++|+|++..+++.. ...+..+++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~--~~--~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNET--SF--SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLE-TGAFNGLAN 104 (455)
T ss_dssp TTCCEEECCSSCCCEECTT--TT--SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEEC-TTTTTTCTT
T ss_pred CccCEEEecCCccCcCChh--Hh--ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccC-hhhccCccc
Confidence 578888884 1 11121 22 234899999999986643 2 234677899999999887654321 112467899
Q ss_pred cceeeecCCcccccccceeEEe-cCCcccEEEEEeeccceE-----EEeCCCccEEEeecccee
Q 046555 176 IEILELVSPEIAMLDAQVTVEL-TSPTLKSIYVEAISLDKF-----ILEADSIERLHLKDCALE 233 (418)
Q Consensus 176 Le~L~l~~~~~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~-----~~~~P~L~~L~l~~~~~~ 233 (418)
|+.|++++|.+...... .-.+ ..++|+.|++++..+..+ ....++|++|++++|.+.
T Consensus 105 L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLS-GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CCEEECTTSCCBTHHHH-SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCEEeCCCCCCCccccC-cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99999998765320000 0001 236889998886544332 224789999999988754
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.78 E-value=4.3e-09 Score=112.10 Aligned_cols=60 Identities=28% Similarity=0.341 Sum_probs=31.9
Q ss_pred cceeEEEEeceEecCCCC-C-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEP-N-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|+|++|.+.+..| . ...+++|+.|+|+++.+++. +...+..+++|+.|++.+|.+
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA-VPPFFGSCSLLESLALSSNNF 330 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC-CCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc-cchHHhcCCCccEEECCCCcc
Confidence 567777777776654222 1 22246677777666554321 111234566666666666543
No 39
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.76 E-value=1.2e-08 Score=105.65 Aligned_cols=213 Identities=15% Similarity=0.110 Sum_probs=111.1
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++|++|+|++|.++..+. .+++|+.|+|++..++.- -...++|+.|++.+|.+..-. ...++|+.|
T Consensus 81 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-----~~~l~~L~~L~L~~N~l~~lp------~~l~~L~~L 146 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHL-----PALPSGLCKLWIFGNQLTSLP------VLPPGLQEL 146 (622)
T ss_dssp TTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCC-----CCCCTTCCEEECCSSCCSCCC------CCCTTCCEE
T ss_pred CCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCC-----CCCCCCcCEEECCCCCCCcCC------CCCCCCCEE
Confidence 566666666665554322 456666666665544321 014456666666655432111 112556666
Q ss_pred EEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhhh
Q 046555 206 YVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMIS 285 (418)
Q Consensus 206 ~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~ 285 (418)
+++...+..+.-..++|+.|++++|.+..+. ...++|+.+.+....+.. +....++|+.|.++++.... ...
T Consensus 147 ~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~-----l~~ 218 (622)
T 3g06_A 147 SVSDNQLASLPALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDNQLAS--LPTLPSELYKLWAYNNRLTS-----LPA 218 (622)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSS-----CCC
T ss_pred ECcCCcCCCcCCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCCCCCC--CCCccchhhEEECcCCcccc-----cCC
Confidence 6654433322222356666666666554433 223556666555543322 22344666666666543221 112
Q ss_pred cCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHHHH
Q 046555 286 RSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEG 365 (418)
Q Consensus 286 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ 365 (418)
..++|+.|++.+..+. .++..+++|++|+++++.... ++. .+.+|+.|++..+.++....
T Consensus 219 ~~~~L~~L~Ls~N~L~--------~lp~~l~~L~~L~Ls~N~L~~-lp~------~~~~L~~L~Ls~N~L~~lp~----- 278 (622)
T 3g06_A 219 LPSGLKELIVSGNRLT--------SLPVLPSELKELMVSGNRLTS-LPM------LPSGLLSLSVYRNQLTRLPE----- 278 (622)
T ss_dssp CCTTCCEEECCSSCCS--------CCCCCCTTCCEEECCSSCCSC-CCC------CCTTCCEEECCSSCCCSCCG-----
T ss_pred CCCCCCEEEccCCccC--------cCCCCCCcCcEEECCCCCCCc-CCc------ccccCcEEeCCCCCCCcCCH-----
Confidence 2367777776543322 123456788888888763221 111 23455667787776665421
Q ss_pred HHhcCcccceEEEee
Q 046555 366 LLKRCPNLRRLVIFG 380 (418)
Q Consensus 366 ll~~c~~Lk~L~i~~ 380 (418)
-+.++++|+.|.|.+
T Consensus 279 ~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 279 SLIHLSSETTVNLEG 293 (622)
T ss_dssp GGGGSCTTCEEECCS
T ss_pred HHhhccccCEEEecC
Confidence 145789999999974
No 40
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.74 E-value=3.5e-09 Score=102.54 Aligned_cols=232 Identities=16% Similarity=0.193 Sum_probs=130.3
Q ss_pred cceeEEEEeceEecCCCC-----CCcccc-ccceeEEeeEEecHH---HHHHHHHcC-cccceeeecCCccccccccee-
Q 046555 126 QKLEVLALAHNTITGVEP-----NFQRFP-CLKSLSLSYVSISAL---DLSLLLTAC-QKIEILELVSPEIAMLDAQVT- 194 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-----~~~~~p-~L~~L~L~~v~~~~~---~l~~ll~~c-p~Le~L~l~~~~~~~~~~~~~- 194 (418)
++|++|+|++|.+.+..+ ....+| +|++|+|+++.+++. .+..++..+ +.|+.|++++|.+... +...
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK-SSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH-HHHHH
Confidence 569999999998877432 234577 899999999988753 455555555 9999999999876321 1110
Q ss_pred ---EEecCCcccEEEEEeeccceEEEe---------CCCccEEEeeccceeeEEEecCCceeEEEecceeEEee-ccCCC
Q 046555 195 ---VELTSPTLKSIYVEAISLDKFILE---------ADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHL-DIGDT 261 (418)
Q Consensus 195 ---~~i~~~~L~~L~l~~~~~~~~~~~---------~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l-~i~~~ 261 (418)
+.-..++|+.|++++..+...... .++|++|++++|.+. +.+...+ .....
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~----------------~~~~~~l~~~l~~ 164 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG----------------IKSSDELIQILAA 164 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG----------------GSCHHHHHHHHHT
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC----------------HHHHHHHHHHHhc
Confidence 000115677777765433221111 247777777776432 1110000 00012
Q ss_pred c-CCceeEEeeccccch---HHHHHhhhcC-CCccEEEEcccccCccccccHhHHhhc-CCCCceeeeeeecccce----
Q 046555 262 V-DNLEIVDVSSFTIFW---PKFYQMISRS-SKLKKLRLWDVVFDEDEVLDLETIGVC-FPQLSHLSLSYDLKDGV---- 331 (418)
Q Consensus 262 ~-~~L~~l~l~~~~~~~---~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~~~~~l~~~-fp~L~~L~l~~~~~~~~---- 331 (418)
. ++|++|+++++.... ..+...+... ++|+.|++.+..+.+.....+...... .++|++|+++++...+.
T Consensus 165 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 244 (362)
T 3goz_A 165 IPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN 244 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred CCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence 3 489999998875432 2344556666 499999987655432222122222223 35899999998743221
Q ss_pred ecccccCCCCcceEEEEecCCcccccchHHHHHHHHhcCcccceEE
Q 046555 332 LHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLV 377 (418)
Q Consensus 332 l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~ 377 (418)
+...+...++ |+.|++.++.+++.....+..+.+..+++++|+
T Consensus 245 l~~~~~~l~~---L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 245 LKLLKDSLKH---LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp HHHTTTTTTT---CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred HHHHHhcCCC---ccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence 1122344444 555566655544433344555555555544444
No 41
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.73 E-value=3.4e-08 Score=93.73 Aligned_cols=214 Identities=20% Similarity=0.167 Sum_probs=140.1
Q ss_pred CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEec-CCcccEEEEEeeccceEEEeCCCcc
Q 046555 145 FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELT-SPTLKSIYVEAISLDKFILEADSIE 223 (418)
Q Consensus 145 ~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~-~~~L~~L~l~~~~~~~~~~~~P~L~ 223 (418)
...+++|++|+|++..+++..- ..+..+++|+.|++++|.+... ..+. .++|+.|+++...+..+. ..|+|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~-----~~~~~l~~L~~L~Ls~n~l~~l~-~~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLNLSSNVLYET-----LDLESLSTLRTLDLNNNYVQELL-VGPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCH-HHHTTCTTCCEEECTTSCCEEE-----EEETTCTTCCEEECCSSEEEEEE-ECTTCC
T ss_pred hccCCCCCEEECcCCccCcCCH-HHhhCCCcCCEEECCCCcCCcc-----hhhhhcCCCCEEECcCCcccccc-CCCCcC
Confidence 3456799999999887764322 3357899999999999765321 1232 478999998865554433 459999
Q ss_pred EEEeeccceeeEEEecCCceeEEEecceeEEeec--cCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccC
Q 046555 224 RLHLKDCALELFELVGRGTLKHFKIDDVSVIHLD--IGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFD 301 (418)
Q Consensus 224 ~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~--i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 301 (418)
.|++++|.+..+.....++|+.+.+....+..+. ....+++|++|++++...............++|+.|++.+..+.
T Consensus 103 ~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 103 TLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp EEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 9999999887666555678888888776544321 12357899999998765432111223345789999988765443
Q ss_pred ccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEee
Q 046555 302 EDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 302 ~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
.. .. ...+++|++|+++++...+.- ..+.. +.+|+.|++..+.+++... -+..+++|+.|.+.+
T Consensus 183 ~~-----~~-~~~l~~L~~L~Ls~N~l~~l~-~~~~~---l~~L~~L~L~~N~l~~l~~-----~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 183 DV-----KG-QVVFAKLKTLDLSSNKLAFMG-PEFQS---AAGVTWISLRNNKLVLIEK-----ALRFSQNLEHFDLRG 246 (317)
T ss_dssp EE-----EC-CCCCTTCCEEECCSSCCCEEC-GGGGG---GTTCSEEECTTSCCCEECT-----TCCCCTTCCEEECTT
T ss_pred cc-----cc-ccccccCCEEECCCCcCCcch-hhhcc---cCcccEEECcCCcccchhh-----HhhcCCCCCEEEccC
Confidence 11 10 113689999999987443221 12333 3456667888777665421 245689999999964
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.71 E-value=7.6e-08 Score=98.09 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=30.1
Q ss_pred cCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEe
Q 046555 314 CFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIF 379 (418)
Q Consensus 314 ~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~ 379 (418)
.+++|++|+++++...+...........+.+|+.|++..+.+++... ....+..+++|+.|.+.
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK--TGEILLTLKNLTSLDIS 395 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH--HHHHGGGCTTCCEEECT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc--chhhhhcCCCCCEEECC
Confidence 46677777776653322111000011223344556666555554211 11234567777777764
No 43
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.70 E-value=3.2e-08 Score=102.57 Aligned_cols=205 Identities=15% Similarity=0.066 Sum_probs=132.6
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++|++|+|++|.+..... .+++|+.|+|++..++. +-...|+|+.|++++|.+..-. -..++|+.|
T Consensus 101 ~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~l~~l~------~~~~~L~~L 166 (622)
T 3g06_A 101 PGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS-----LPVLPPGLQELSVSDNQLASLP------ALPSELCKL 166 (622)
T ss_dssp TTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSCCC------CCCTTCCEE
T ss_pred CCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCc-----CCCCCCCCCEEECcCCcCCCcC------CccCCCCEE
Confidence 789999999998876433 67889999998876553 1123589999999987653211 124678888
Q ss_pred EEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhhh
Q 046555 206 YVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMIS 285 (418)
Q Consensus 206 ~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~ 285 (418)
.+.+..+..+.-..++|+.|++++|.+..+.. ..++|+.+.+....+.. +....++|+.|++++..... .-.
T Consensus 167 ~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~--l~~~~~~L~~L~Ls~N~L~~-----lp~ 238 (622)
T 3g06_A 167 WAYNNQLTSLPMLPSGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTS--LPALPSGLKELIVSGNRLTS-----LPV 238 (622)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSS--CCCCCTTCCEEECCSSCCSC-----CCC
T ss_pred ECCCCCCCCCcccCCCCcEEECCCCCCCCCCC-ccchhhEEECcCCcccc--cCCCCCCCCEEEccCCccCc-----CCC
Confidence 88765544443346899999999987765432 23677777776654432 33456889999998765432 114
Q ss_pred cCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHHH
Q 046555 286 RSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVE 364 (418)
Q Consensus 286 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~ 364 (418)
..++|+.|++.+..+. .++..+++|++|+++++... .++..+.++ .+|+.|++..+.+++.....+.
T Consensus 239 ~l~~L~~L~Ls~N~L~--------~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l---~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 239 LPSELKELMVSGNRLT--------SLPMLPSGLLSLSVYRNQLT-RLPESLIHL---SSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCTTCCEEECCSSCCS--------CCCCCCTTCCEEECCSSCCC-SCCGGGGGS---CTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCcCcEEECCCCCCC--------cCCcccccCcEEeCCCCCCC-cCCHHHhhc---cccCEEEecCCCCCCcCHHHHH
Confidence 4578999987654332 12335678999999887433 222233444 4455677777776654433333
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.70 E-value=1.3e-08 Score=101.45 Aligned_cols=193 Identities=18% Similarity=0.177 Sum_probs=88.5
Q ss_pred cceeEEEEeceEecCC-CCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGV-EPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~-~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
+++++|+|++|.+... ......+++|+.|+|++..+++... ..+.++++|+.|+|++|.+..-... .+ -..++|+.
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~-~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSG-AF-EYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTT-TS-SSCTTCCE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChh-hh-cccCCCCE
Confidence 5666677766655542 2234566667777766654432111 1234566677777766544211110 00 01245555
Q ss_pred EEEEeeccceEEE----eCCCccEEEeeccc-eeeEE---EecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccc
Q 046555 205 IYVEAISLDKFIL----EADSIERLHLKDCA-LELFE---LVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIF 276 (418)
Q Consensus 205 L~l~~~~~~~~~~----~~P~L~~L~l~~~~-~~~~~---~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~ 276 (418)
|.+++..+..+.- ..|+|++|++++|. +..+. ..+.++|+.+.+....+..+.-...+++|+.|++++....
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCS
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCc
Confidence 5555433332221 24666666666542 22111 1122444444444433322222234566666666654332
Q ss_pred hHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeee
Q 046555 277 WPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 277 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~ 326 (418)
. .....+..+++|+.|.+.+..+... .. .....+++|++|+++.+
T Consensus 232 ~-~~~~~~~~l~~L~~L~L~~n~l~~~---~~-~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 232 E-IRPGSFHGLSSLKKLWVMNSQVSLI---ER-NAFDGLASLVELNLAHN 276 (452)
T ss_dssp E-ECGGGGTTCTTCCEEECTTSCCCEE---CT-TTTTTCTTCCEEECCSS
T ss_pred c-cCcccccCccCCCEEEeCCCcCceE---CH-HHhcCCCCCCEEECCCC
Confidence 1 0112344556666666654332211 00 11234566777776655
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.70 E-value=1.4e-08 Score=96.71 Aligned_cols=216 Identities=20% Similarity=0.169 Sum_probs=111.3
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
+++++|+|++|.+.+..+ ....+++|++|+|++..+++.. ...+..+++|+.|+++++.+..-... + .++|+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~----~-~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLKELPEK----M-PKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCSBCCSS----C-CTTCCE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcCCccChh----h-cccccE
Confidence 577777777777666433 3556777777777766554211 11245677777777777654311110 1 256777
Q ss_pred EEEEeeccceEE----EeCCCccEEEeeccceeeEE-----EecCCceeEEEecceeEEeeccCCCcCCceeEEeecccc
Q 046555 205 IYVEAISLDKFI----LEADSIERLHLKDCALELFE-----LVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTI 275 (418)
Q Consensus 205 L~l~~~~~~~~~----~~~P~L~~L~l~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~ 275 (418)
|.+++..+..+. -..++|+.|+++++.+.... ..+.++|+.+.+....+..+.. ...++|+.+++++...
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~L~~L~l~~n~l 204 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKI 204 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-SCCTTCSEEECTTSCC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-cccccCCEEECCCCcC
Confidence 776644333222 12577777777776553211 1123556666665544332221 1236777777766543
Q ss_pred chHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCccc
Q 046555 276 FWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVI 355 (418)
Q Consensus 276 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~ 355 (418)
.. .....+..+++|+.|++.+..+... .. .....+++|++|.++++... .++..+..+ .+|+.+++..+.+
T Consensus 205 ~~-~~~~~~~~l~~L~~L~Ls~n~l~~~---~~-~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l---~~L~~L~l~~N~i 275 (330)
T 1xku_A 205 TK-VDAASLKGLNNLAKLGLSFNSISAV---DN-GSLANTPHLRELHLNNNKLV-KVPGGLADH---KYIQVVYLHNNNI 275 (330)
T ss_dssp CE-ECTGGGTTCTTCCEEECCSSCCCEE---CT-TTGGGSTTCCEEECCSSCCS-SCCTTTTTC---SSCCEEECCSSCC
T ss_pred Cc-cCHHHhcCCCCCCEEECCCCcCcee---Ch-hhccCCCCCCEEECCCCcCc-cCChhhccC---CCcCEEECCCCcC
Confidence 21 0112345667777777755433211 00 11234677777777765322 111222233 3444556655544
Q ss_pred cc
Q 046555 356 SD 357 (418)
Q Consensus 356 ~d 357 (418)
++
T Consensus 276 ~~ 277 (330)
T 1xku_A 276 SA 277 (330)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.68 E-value=1.8e-08 Score=100.15 Aligned_cols=193 Identities=16% Similarity=0.196 Sum_probs=88.2
Q ss_pred cceeEEEEeceEecCCC-CCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVE-PNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~-~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
++++.|+|++|.+.... .....+++|+.|+|++..+..... ..+.++++|+.|+|++|.+..-... .+ -..++|+.
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~-~~-~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNG-AF-VYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTT-TS-CSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHh-Hh-hccccCce
Confidence 45666666666554422 234556666666666554432111 1134566666666666544211110 00 01245555
Q ss_pred EEEEeeccceEEE----eCCCccEEEeeccc-eeeEE---EecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccc
Q 046555 205 IYVEAISLDKFIL----EADSIERLHLKDCA-LELFE---LVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIF 276 (418)
Q Consensus 205 L~l~~~~~~~~~~----~~P~L~~L~l~~~~-~~~~~---~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~ 276 (418)
|.+++..+..+.- ..|+|++|+++++. +..+. ..+.++|+.+.+....+..+.-...+++|+.|++++....
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccC
Confidence 5555433332211 24666666666532 11111 1122445555544433322222234566666666654322
Q ss_pred hHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeee
Q 046555 277 WPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 277 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~ 326 (418)
. .....+..+++|+.|.+.+..+... .. .....+++|++|+++++
T Consensus 221 ~-~~~~~~~~l~~L~~L~L~~n~l~~~---~~-~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 221 A-IRPGSFQGLMHLQKLWMIQSQIQVI---ER-NAFDNLQSLVEINLAHN 265 (440)
T ss_dssp E-ECTTTTTTCTTCCEEECTTCCCCEE---CT-TSSTTCTTCCEEECTTS
T ss_pred c-cChhhhccCccCCEEECCCCceeEE---Ch-hhhcCCCCCCEEECCCC
Confidence 1 0112344556677766654332211 00 11234566777777665
No 47
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.66 E-value=1.6e-08 Score=95.75 Aligned_cols=182 Identities=16% Similarity=0.191 Sum_probs=105.1
Q ss_pred CCceEEEEe---ecCCCCccccccccccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccce
Q 046555 102 ETLRRLYYN---VRTTPNVNILEICGRQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEI 178 (418)
Q Consensus 102 ~~l~~L~l~---~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~ 178 (418)
.++++|++. ....+. + ..+++|++|+|++|.+.+..+ ...+++|+.|+|++..+++-. -+..+++|+.
T Consensus 41 ~~L~~L~l~~~~i~~l~~--~---~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~ 111 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEG--V---QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS---AIAGLQSIKT 111 (308)
T ss_dssp HTCCEEECTTSCCCCCTT--G---GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG---GGTTCTTCCE
T ss_pred CCcCEEEeeCCCccCchh--h---hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch---hhcCCCCCCE
Confidence 467888773 111111 2 123788889998888877554 677888888888887766421 2567888888
Q ss_pred eeecCCcccccccceeEEecCCcccEEEEEeeccceE--EEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEee
Q 046555 179 LELVSPEIAMLDAQVTVELTSPTLKSIYVEAISLDKF--ILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHL 256 (418)
Q Consensus 179 L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~--~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l 256 (418)
|++++|.+...... -..++|+.|.+++..+..+ .-..++|+.|++++|.+. .+
T Consensus 112 L~l~~n~l~~~~~l----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~---------------------~~ 166 (308)
T 1h6u_A 112 LDLTSTQITDVTPL----AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS---------------------DL 166 (308)
T ss_dssp EECTTSCCCCCGGG----TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC---------------------CC
T ss_pred EECCCCCCCCchhh----cCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCC---------------------CC
Confidence 88888765321111 0124566665553322111 112456666666655432 11
Q ss_pred ccCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeee
Q 046555 257 DIGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 257 ~i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~ 326 (418)
.....+++|+.|++++.....- ..+..+++|+.|++.+..+... .. ...+++|++|.++.+
T Consensus 167 ~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~-----~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 167 TPLANLSKLTTLKADDNKISDI---SPLASLPNLIEVHLKNNQISDV-----SP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECTTSCCCBC-----GG-GTTCTTCCEEEEEEE
T ss_pred hhhcCCCCCCEEECCCCccCcC---hhhcCCCCCCEEEccCCccCcc-----cc-ccCCCCCCEEEccCC
Confidence 1123567777777776543211 1156677888888765544311 11 345788888888765
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.65 E-value=3.8e-08 Score=94.68 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=110.3
Q ss_pred CCceEEEEe---e-cCCCCccccccccccceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCccc
Q 046555 102 ETLRRLYYN---V-RTTPNVNILEICGRQKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKI 176 (418)
Q Consensus 102 ~~l~~L~l~---~-~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~L 176 (418)
++++.|++. . ..++. .+ ...++|++|+|++|.+....+. ...+++|++|+|++..+..-.-...+..+++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~--~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEED--SF--SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TTCCEEECTTSCCCEECTT--TT--TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred CCCCEEECCCCccCccCHh--hc--CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 788999883 1 11121 22 2348999999999988875443 46789999999998776531111245689999
Q ss_pred ceeeecCCcccccccceeEEe-cCCcccEEEEEeeccceEE----EeCCCccEEEeeccceeeEEEecCCceeEEEecce
Q 046555 177 EILELVSPEIAMLDAQVTVEL-TSPTLKSIYVEAISLDKFI----LEADSIERLHLKDCALELFELVGRGTLKHFKIDDV 251 (418)
Q Consensus 177 e~L~l~~~~~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~----~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~ 251 (418)
+.|++++|......... .+ ..++|+.|++++..+..+. -..++|++|+++++.+..+..
T Consensus 152 ~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-------------- 215 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE-------------- 215 (353)
T ss_dssp CEEEEEESSSCCEECTT--TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH--------------
T ss_pred cEEECCCCccccccCHH--HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh--------------
Confidence 99999986311110000 01 2367888988865544432 125789999998876432110
Q ss_pred eEEeeccCCCcCCceeEEeeccccchH--HHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeee
Q 046555 252 SVIHLDIGDTVDNLEIVDVSSFTIFWP--KFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 252 ~~~~l~i~~~~~~L~~l~l~~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~ 326 (418)
.+....++|+.+++++...... .........+.++.+.+...................+++|++|+++++
T Consensus 216 -----~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 216 -----IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp -----HHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred -----hhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 0011234555555554332210 001112234556666665544332111112222345677777777765
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.64 E-value=2.5e-08 Score=101.98 Aligned_cols=217 Identities=13% Similarity=0.100 Sum_probs=136.8
Q ss_pred ceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEEE
Q 046555 127 KLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSIY 206 (418)
Q Consensus 127 ~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L~ 206 (418)
+|+.|++++|.+...+ ...+++|+.|++.+..+....- ...+|+|+.|++++|.+.........-...++|+.|+
T Consensus 305 ~L~~L~l~~n~~~~l~--~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 379 (570)
T 2z63_A 305 GWQHLELVNCKFGQFP--TLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379 (570)
T ss_dssp CCSEEEEESCBCSSCC--BCBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred CccEEeeccCcccccC--cccccccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence 8999999999887543 2578999999998876543110 1679999999999876532110000011347889998
Q ss_pred EEeeccceE---EEeCCCccEEEeeccceeeEE----EecCCceeEEEecceeEEee--ccCCCcCCceeEEeeccccch
Q 046555 207 VEAISLDKF---ILEADSIERLHLKDCALELFE----LVGRGTLKHFKIDDVSVIHL--DIGDTVDNLEIVDVSSFTIFW 277 (418)
Q Consensus 207 l~~~~~~~~---~~~~P~L~~L~l~~~~~~~~~----~~~~~~L~~l~l~~~~~~~l--~i~~~~~~L~~l~l~~~~~~~ 277 (418)
+++..+..+ ....|+|++|++++|.+.... ..+.++|+.+.+....+... .....+++|+.++++++....
T Consensus 380 l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 459 (570)
T 2z63_A 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459 (570)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc
Confidence 885533322 334899999999998765331 22347788888877655432 223468899999998876432
Q ss_pred HHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCccc
Q 046555 278 PKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVI 355 (418)
Q Consensus 278 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~ 355 (418)
..+...+..+++|+.|++.+..+... .. .....+++|++|+++++...+.....+..+++| +.+++..+.+
T Consensus 460 ~~~p~~~~~l~~L~~L~l~~n~l~~~---~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L---~~L~l~~N~~ 530 (570)
T 2z63_A 460 NFLPDIFTELRNLTFLDLSQCQLEQL---SP-TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL---QKIWLHTNPW 530 (570)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEE---CT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC---CEEECCSSCB
T ss_pred ccchhhhhcccCCCEEECCCCccccC---Ch-hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC---cEEEecCCcc
Confidence 12223466788999999876544311 11 123457899999999874443333334455554 4556654443
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.62 E-value=2.7e-08 Score=100.79 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=50.1
Q ss_pred CcCCceeEEeeccc--c---chHHHHHhhhcCCCccEEEEcccccCccccccHhHHh--hcCCCCceeeeeeecccceec
Q 046555 261 TVDNLEIVDVSSFT--I---FWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIG--VCFPQLSHLSLSYDLKDGVLH 333 (418)
Q Consensus 261 ~~~~L~~l~l~~~~--~---~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~--~~fp~L~~L~l~~~~~~~~l~ 333 (418)
.+++|+.+++++.. . ........+...++|+.|.+.+..+.... ...+. ...++|++|.++++...|..+
T Consensus 188 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~---~~~~~~~~~~~~L~~L~l~~n~l~~~~p 264 (520)
T 2z7x_B 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS---FIRILQLVWHTTVWYFSISNVKLQGQLD 264 (520)
T ss_dssp TCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH---HHHHHHHHHTSSCSEEEEEEEEEESCCC
T ss_pred cccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH---HHHHHHHhhhCcccEEEeecccccCccc
Confidence 46777887777643 0 01122335677889999988765443111 11111 124689999998874433333
Q ss_pred ccc--cCCCCcceEEEEecCCccc
Q 046555 334 YGL--QGSANLENVAVLELGWPVI 355 (418)
Q Consensus 334 ~~l--~~~~~Le~l~vl~l~~~~~ 355 (418)
..+ .....+++|+.+++..+.+
T Consensus 265 ~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 265 FRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp CCCCCCCSCCCCEEEEEEEEECCC
T ss_pred cchhhcccccCceeEeccccccce
Confidence 222 0114566777777654443
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.61 E-value=3.1e-08 Score=106.60 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=91.7
Q ss_pred cceeEEEEeceEecCC-CCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGV-EPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~-~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
++|+.|+|++|.+.+. ......+++|+.|+|++..+++.. ...+.++++|+.|++++|.+...... . --..++|+.
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~-~-~~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSS-N-FYGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSC-S-CSSCTTCCE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHH-H-hcCCCCCCE
Confidence 6788899888866553 234567888999999887654311 11246788999999988765321111 0 012367788
Q ss_pred EEEEeeccceEE----EeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHH
Q 046555 205 IYVEAISLDKFI----LEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKF 280 (418)
Q Consensus 205 L~l~~~~~~~~~----~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~ 280 (418)
|+++...+..+. -..|+|+.|++++|.+..+.. .++|+.+.+....+..+ .....+++.+++++.....-..
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~~l--~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLVTL--PKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCCCC--CCCCTTCCEEECCSCCCCSSTT
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCcccc--cccccccceeecccCccccCch
Confidence 877754332221 236788888888876543321 35566666555433222 2233455555555443322111
Q ss_pred HHhhhcCCCccEEEEccc
Q 046555 281 YQMISRSSKLKKLRLWDV 298 (418)
Q Consensus 281 ~~~l~~~~~L~~L~L~~~ 298 (418)
...+..+++|+.|++.+.
T Consensus 419 ~~~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQN 436 (844)
T ss_dssp HHHHTTCTTCCEEEEESC
T ss_pred hhhhhcCCccceeeCCCC
Confidence 122334555666655443
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.60 E-value=1.9e-07 Score=94.61 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=45.1
Q ss_pred ccceeEEEEeceE-------ecCCCCCCccccccceeEEeeEEecHHHHHHHHH--cCcccceeeecCCcc
Q 046555 125 RQKLEVLALAHNT-------ITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLT--ACQKIEILELVSPEI 186 (418)
Q Consensus 125 ~~~L~~L~L~~~~-------l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~--~cp~Le~L~l~~~~~ 186 (418)
+++|+.|++++|. +.+..+....+++|+.|++.++.+++..+..+.. .++.|+.|++++|.+
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 259 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKL 259 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEE
T ss_pred ccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccc
Confidence 4778888888764 3332234567888999999999988876666553 367999999988654
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.59 E-value=8.2e-08 Score=90.93 Aligned_cols=60 Identities=17% Similarity=0.311 Sum_probs=35.4
Q ss_pred cceeEEEEec-eEecCC-CCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAH-NTITGV-EPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~-~~l~~~-~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|+|++ +.+.+. +.....+++|+.|+|++..+++. +...+..+++|+.|++++|.+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l 137 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNAL 137 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCcc
Confidence 6777777774 555542 22345667777777776655421 111245677777777776544
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.59 E-value=1.6e-08 Score=95.89 Aligned_cols=217 Identities=13% Similarity=0.098 Sum_probs=114.2
Q ss_pred cceeEEEEeceEecC---CCCCCccccccceeEEee-EEecHHHHHHHHHcCcccceeeecCCcccccccceeEEe-cCC
Q 046555 126 QKLEVLALAHNTITG---VEPNFQRFPCLKSLSLSY-VSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVEL-TSP 200 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~---~~~~~~~~p~L~~L~L~~-v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i-~~~ 200 (418)
.++++|+|+++.+.+ .++....+++|+.|+|++ ..+.+. +..-+..+++|+.|++++|.+...... .+ ..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPD---FLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCG---GGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCH---HHhCCC
Confidence 579999999998875 344567889999999985 333321 111256899999999998765311110 01 236
Q ss_pred cccEEEEEeeccc----eEEEeCCCccEEEeeccceeeE-E--EecCC-ceeEEEecceeEEee--ccCCCcCCceeEEe
Q 046555 201 TLKSIYVEAISLD----KFILEADSIERLHLKDCALELF-E--LVGRG-TLKHFKIDDVSVIHL--DIGDTVDNLEIVDV 270 (418)
Q Consensus 201 ~L~~L~l~~~~~~----~~~~~~P~L~~L~l~~~~~~~~-~--~~~~~-~L~~l~l~~~~~~~l--~i~~~~~~L~~l~l 270 (418)
+|+.|+++...+. ......|+|++|++++|.+... . +...+ .|+.+.+....+... ....... |+.+++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 7888877743222 1112368888888888866421 1 11222 566666655443311 0011222 666666
Q ss_pred eccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEec
Q 046555 271 SSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLEL 350 (418)
Q Consensus 271 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l 350 (418)
++..... .....+...++|+.|++.+..+... ... ...+++|++|+++++...+..+..+..++ +|+.|++
T Consensus 205 s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~----~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~---~L~~L~L 275 (313)
T 1ogq_A 205 SRNMLEG-DASVLFGSDKNTQKIHLAKNSLAFD----LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK---FLHSLNV 275 (313)
T ss_dssp CSSEEEE-CCGGGCCTTSCCSEEECCSSEECCB----GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT---TCCEEEC
T ss_pred cCCcccC-cCCHHHhcCCCCCEEECCCCceeee----cCc-ccccCCCCEEECcCCcccCcCChHHhcCc---CCCEEEC
Confidence 6544321 1112344556666666654333210 111 22345666666665533333332233333 3344555
Q ss_pred CCcccc
Q 046555 351 GWPVIS 356 (418)
Q Consensus 351 ~~~~~~ 356 (418)
..+.++
T Consensus 276 s~N~l~ 281 (313)
T 1ogq_A 276 SFNNLC 281 (313)
T ss_dssp CSSEEE
T ss_pred cCCccc
Confidence 544443
No 55
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.59 E-value=8.3e-08 Score=98.35 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=102.0
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
++|++|+|++|.+.+..+ ....+++|+.|+|++..++. +... .+++|+.|++++|.+..-.....+ -..++|+.
T Consensus 76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~ 150 (562)
T 3a79_B 76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN--ISCC--PMASLRHLDLSFNDFDVLPVCKEF-GNLTKLTF 150 (562)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE--ECSC--CCTTCSEEECCSSCCSBCCCCGGG-GGCTTCCE
T ss_pred CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc--cCcc--ccccCCEEECCCCCccccCchHhh-cccCcccE
Confidence 567777777666555322 24556667777766654432 1000 566677777766554221100000 01246666
Q ss_pred EEEEeeccceEEE-eCCCc--cEEEeeccce--eeEE--EecCCceeEEEe--cceeEEe---eccCCCcCCceeEEeec
Q 046555 205 IYVEAISLDKFIL-EADSI--ERLHLKDCAL--ELFE--LVGRGTLKHFKI--DDVSVIH---LDIGDTVDNLEIVDVSS 272 (418)
Q Consensus 205 L~l~~~~~~~~~~-~~P~L--~~L~l~~~~~--~~~~--~~~~~~L~~l~l--~~~~~~~---l~i~~~~~~L~~l~l~~ 272 (418)
|++++..+....+ ..++| +.|++++|.+ .... .+..-..+.+.+ ....... -.....+++|+.+++++
T Consensus 151 L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 230 (562)
T 3a79_B 151 LGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230 (562)
T ss_dssp EEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEEC
T ss_pred EecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccc
Confidence 6666432221111 12344 6666666544 1100 000000011111 1110000 00112466788888876
Q ss_pred cccc---hHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccc--cCCCCcceEEE
Q 046555 273 FTIF---WPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGL--QGSANLENVAV 347 (418)
Q Consensus 273 ~~~~---~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l--~~~~~Le~l~v 347 (418)
.... .......+...++++.|.+....+.......... ....++|++|+++.+...|..+... ...+.++.|.+
T Consensus 231 n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~ 309 (562)
T 3a79_B 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMI 309 (562)
T ss_dssp CSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEE
T ss_pred cccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheeh
Confidence 4311 1223345667788888888665443211111111 1123589999998874443332211 11256777777
Q ss_pred EecCCcc
Q 046555 348 LELGWPV 354 (418)
Q Consensus 348 l~l~~~~ 354 (418)
+++..+.
T Consensus 310 ~~~~~~~ 316 (562)
T 3a79_B 310 EHVKNQV 316 (562)
T ss_dssp EEEEECC
T ss_pred hhcccce
Confidence 7665443
No 56
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.58 E-value=1e-07 Score=99.20 Aligned_cols=107 Identities=14% Similarity=0.117 Sum_probs=66.1
Q ss_pred ccceeEEEEeceEecCC-CCCCccccccceeEEeeEE-ecH----HHHHHH--HHcCcccceeeecCCcccccccceeEE
Q 046555 125 RQKLEVLALAHNTITGV-EPNFQRFPCLKSLSLSYVS-ISA----LDLSLL--LTACQKIEILELVSPEIAMLDAQVTVE 196 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~-~~~~~~~p~L~~L~L~~v~-~~~----~~l~~l--l~~cp~Le~L~l~~~~~~~~~~~~~~~ 196 (418)
.++|++|+|++|.+.+. +.....+++|+.|+|++.. +++ ..+..+ +..+++|+.|++.+|.+..-.... .
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~--~ 325 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET--S 325 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH--H
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchh--h
Confidence 48999999999987663 3446778999999999987 776 233332 234689999999887653111100 0
Q ss_pred e-cCCcccEEEEEeeccc-e--EEEeCCCccEEEeecccee
Q 046555 197 L-TSPTLKSIYVEAISLD-K--FILEADSIERLHLKDCALE 233 (418)
Q Consensus 197 i-~~~~L~~L~l~~~~~~-~--~~~~~P~L~~L~l~~~~~~ 233 (418)
+ ..++|+.|.++...+. . ..-..++|+.|++++|.+.
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE
T ss_pred hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc
Confidence 1 1256777776643222 1 1122456666666666544
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.57 E-value=1.4e-07 Score=96.67 Aligned_cols=58 Identities=24% Similarity=0.380 Sum_probs=28.2
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPE 185 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~ 185 (418)
++|++|+|++|.+...+.. .+++|++|+|++..+++-.+...+..+++|+.|+++++.
T Consensus 100 ~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 100 QDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp TTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 5566666666554432221 555566666655544321111123445555555555544
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.56 E-value=5.9e-08 Score=97.81 Aligned_cols=214 Identities=20% Similarity=0.172 Sum_probs=139.4
Q ss_pred CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEe-cCCcccEEEEEeeccceEEEeCCCcc
Q 046555 145 FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVEL-TSPTLKSIYVEAISLDKFILEADSIE 223 (418)
Q Consensus 145 ~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~~~~P~L~ 223 (418)
...+|+|+.|+|++..+++..- ..+..+|+|+.|+|++|.+... ..+ ..++|+.|++++..+..+. ..|+|+
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls~N~l~~l~-~~~~L~ 102 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISA-ADLAPFTKLELLNLSSNVLYET-----LDLESLSTLRTLDLNNNYVQELL-VGPSIE 102 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCG-GGGTTCTTCCEEECTTSCCEEE-----EECTTCTTCCEEECCSSEEEEEE-ECTTCC
T ss_pred cccCCCccEEEeeCCcCCCCCH-HHHhCCCCCCEEEeeCCCCCCC-----cccccCCCCCEEEecCCcCCCCC-CCCCcC
Confidence 3466799999999987764211 2357899999999999765321 123 2478999998866555433 359999
Q ss_pred EEEeeccceeeEEEecCCceeEEEecceeEEeec--cCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccC
Q 046555 224 RLHLKDCALELFELVGRGTLKHFKIDDVSVIHLD--IGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFD 301 (418)
Q Consensus 224 ~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~--i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 301 (418)
.|++++|.+..+.....++|+.+.+....+..+. ....+++|+.|++++..........+...+++|+.|++.+..+.
T Consensus 103 ~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 103 TLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp EEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred EEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 9999999887666555678888888776543321 11357899999998765543212222335789999998765544
Q ss_pred ccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEee
Q 046555 302 EDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 302 ~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
.. .. ...+++|++|+++++...+.-. .+.. +..|+.|++..+.+++... -+..+++|+.|.+.+
T Consensus 183 ~~-----~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~---l~~L~~L~Ls~N~l~~lp~-----~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 183 DV-----KG-QVVFAKLKTLDLSSNKLAFMGP-EFQS---AAGVTWISLRNNKLVLIEK-----ALRFSQNLEHFDLRG 246 (487)
T ss_dssp EE-----EC-CCCCTTCCEEECCSSCCCEECG-GGGG---GTTCSEEECTTSCCCEECT-----TCCCCTTCCEEECTT
T ss_pred cc-----cc-cccCCCCCEEECCCCCCCCCCH-hHcC---CCCccEEEecCCcCcccch-----hhccCCCCCEEEcCC
Confidence 21 11 1136899999999874443221 2333 3455667787776665321 145678999999964
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.56 E-value=1.3e-08 Score=109.63 Aligned_cols=105 Identities=26% Similarity=0.288 Sum_probs=65.1
Q ss_pred ccceeEEEEeceEecCCC-CCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCccc
Q 046555 125 RQKLEVLALAHNTITGVE-PNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLK 203 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~-~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~ 203 (418)
.++|+.|+|++|.+.+.. .....+++|+.|+|++..+++.. ...+.++|+|+.|++++|.+..-... .+ -..++|+
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~-~~-~~l~~L~ 365 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNHIAIIQDQ-TF-KFLEKLQ 365 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCEEECCSCCCCCCCSS-CS-CSCCCCC
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCEEECCCCCCCccChh-hh-cCCCCCC
Confidence 378899999888776532 24567888999998887664311 11245788889998888765322111 01 1236788
Q ss_pred EEEEEeeccceEEEeCCCccEEEeecccee
Q 046555 204 SIYVEAISLDKFILEADSIERLHLKDCALE 233 (418)
Q Consensus 204 ~L~l~~~~~~~~~~~~P~L~~L~l~~~~~~ 233 (418)
.|.+++..+..+. ..|+|+.|++++|.+.
T Consensus 366 ~L~Ls~N~l~~i~-~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 366 TLDLRDNALTTIH-FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp EEEEETCCSCCCS-SCCSCSEEEEESCCCC
T ss_pred EEECCCCCCCccc-CCCCcchhccCCCCcc
Confidence 8888754333211 1567777777776654
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.53 E-value=7.5e-08 Score=100.87 Aligned_cols=57 Identities=28% Similarity=0.337 Sum_probs=36.5
Q ss_pred cceeEEEEeceEecCCC-CCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecC
Q 046555 126 QKLEVLALAHNTITGVE-PNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVS 183 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~-~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~ 183 (418)
++|++|+|++|.+.+.. .....+++|++|+|++..+.+.. ...+.++++|+.|++.+
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF-SHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC-TTTTTTCTTCCEEECTT
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccC-hhhhcCCCCccEEeccc
Confidence 45888888888765532 23566788888888776554311 11245677777777765
No 61
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.52 E-value=1.4e-07 Score=89.83 Aligned_cols=224 Identities=12% Similarity=0.037 Sum_probs=103.4
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++|++|+|++|.+...+. ..+++|++|++++..+.... ...+..+++|+.|++.++.+.........--..++|+.|
T Consensus 100 ~~L~~L~Ls~n~l~~l~~--~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TTCCEEECCSSCCSBCCS--SCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCEEECCCCcCCccCh--hhcccccEEECCCCcccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 667777777766654321 22366777777665554311 223556777777777765442100000000012455555
Q ss_pred EEEeeccceEEEe-CCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhh
Q 046555 206 YVEAISLDKFILE-ADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMI 284 (418)
Q Consensus 206 ~l~~~~~~~~~~~-~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l 284 (418)
.+.+..+..+... .++|++|++++|.+.... ......+++|+.|++++..... .....+
T Consensus 177 ~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~-------------------~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~ 236 (330)
T 1xku_A 177 RIADTNITTIPQGLPPSLTELHLDGNKITKVD-------------------AASLKGLNNLAKLGLSFNSISA-VDNGSL 236 (330)
T ss_dssp ECCSSCCCSCCSSCCTTCSEEECTTSCCCEEC-------------------TGGGTTCTTCCEEECCSSCCCE-ECTTTG
T ss_pred ECCCCccccCCccccccCCEEECCCCcCCccC-------------------HHHhcCCCCCCEEECCCCcCce-eChhhc
Confidence 5553322211100 155566665555432110 0112346777777777654321 011234
Q ss_pred hcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCC---CCcceEEEEecCCcccccchHH
Q 046555 285 SRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGS---ANLENVAVLELGWPVISDLFSH 361 (418)
Q Consensus 285 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~---~~Le~l~vl~l~~~~~~d~~~~ 361 (418)
..+++|+.|++.+..+.. +..-...+++|++|.++.+...+.-...+... .....+..+++..+.+....
T Consensus 237 ~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~-- 309 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLVK-----VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE-- 309 (330)
T ss_dssp GGSTTCCEEECCSSCCSS-----CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG--
T ss_pred cCCCCCCEEECCCCcCcc-----CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc--
Confidence 567788888876554331 11112356788888887753222111111110 11223333455433332100
Q ss_pred HHHHHHhcCcccceEEEe
Q 046555 362 WVEGLLKRCPNLRRLVIF 379 (418)
Q Consensus 362 ~l~~ll~~c~~Lk~L~i~ 379 (418)
....-..++++|+.+.+.
T Consensus 310 i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp SCGGGGTTCCCGGGEEC-
T ss_pred cCccccccccceeEEEec
Confidence 001123567888888875
No 62
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=1.7e-07 Score=90.52 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=35.8
Q ss_pred cceeEEEEeceEecC-C--------CCCCccccccceeEEeeEEec--------HHHHHHHHHcCcccceeeecCC
Q 046555 126 QKLEVLALAHNTITG-V--------EPNFQRFPCLKSLSLSYVSIS--------ALDLSLLLTACQKIEILELVSP 184 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~-~--------~~~~~~~p~L~~L~L~~v~~~--------~~~l~~ll~~cp~Le~L~l~~~ 184 (418)
++++.|.++.+.+++ . ......||+|+.|.+..+... ..++..++..+|+||.|.|+++
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 346666666544331 0 011335778888877654321 1257788888999999998873
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.50 E-value=2.7e-08 Score=92.77 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=25.9
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCC
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSP 184 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~ 184 (418)
++|++|+|+++.+.+..+ ....+++|+.|+|++..+++.. ...+..+++|+.|++++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCC
Confidence 455555555554443221 2344555555555544332210 011334555555555554
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.49 E-value=6.7e-08 Score=98.48 Aligned_cols=150 Identities=17% Similarity=0.254 Sum_probs=68.6
Q ss_pred cceeEEEEeceEecCCC-CCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVE-PNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~-~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
++|++|+|++|.+.+.. .....+++|++|+|++..+++..- ..+..+++|+.|++++|.+..-
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~--------------- 113 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYLNLMGNPYQTL--------------- 113 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEEECTTCCCSSS---------------
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcEEECCCCccccc---------------
Confidence 56666666666554422 223455666666665554443111 1234566666666665433110
Q ss_pred EEEEeeccceEEEeCCCccEEEeeccc-eeeEE---EecCCceeEEEecceeEEee--ccCCCcCCceeEEeeccccchH
Q 046555 205 IYVEAISLDKFILEADSIERLHLKDCA-LELFE---LVGRGTLKHFKIDDVSVIHL--DIGDTVDNLEIVDVSSFTIFWP 278 (418)
Q Consensus 205 L~l~~~~~~~~~~~~P~L~~L~l~~~~-~~~~~---~~~~~~L~~l~l~~~~~~~l--~i~~~~~~L~~l~l~~~~~~~~ 278 (418)
......-..++|++|++++|. ...+. ..+.++|+.+.+....+... .....+++|+.++++......
T Consensus 114 ------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~- 186 (549)
T 2z81_A 114 ------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF- 186 (549)
T ss_dssp ------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-
T ss_pred ------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-
Confidence 000111135788888888875 33221 11234555555544332211 111234556666655443211
Q ss_pred HHHHhhhcCCCccEEEEccc
Q 046555 279 KFYQMISRSSKLKKLRLWDV 298 (418)
Q Consensus 279 ~~~~~l~~~~~L~~L~L~~~ 298 (418)
.....+...++|+.|++.+.
T Consensus 187 ~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 187 LLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp HHHHHHHSTTTBSEEEEESC
T ss_pred cchhhHhhcccccEEEccCC
Confidence 00111233556666665543
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.49 E-value=2.1e-07 Score=97.52 Aligned_cols=171 Identities=19% Similarity=0.132 Sum_probs=83.8
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHH--cCcccceeeecCCcccccccceeEEecCCcc
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLT--ACQKIEILELVSPEIAMLDAQVTVELTSPTL 202 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~--~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L 202 (418)
++|++|++++|.+.+..+ ....+++|+.|.+.++.+.+.....+.. ..+.|+.|.++++.+.............++|
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 445555555554443222 1234455555555555444333332221 3477888888776442211100001112457
Q ss_pred cEEEEEeeccceEE----EeCCCccEEEeeccceeeEE---EecCCceeEEEecceeE---------Eeec--cCCCcCC
Q 046555 203 KSIYVEAISLDKFI----LEADSIERLHLKDCALELFE---LVGRGTLKHFKIDDVSV---------IHLD--IGDTVDN 264 (418)
Q Consensus 203 ~~L~l~~~~~~~~~----~~~P~L~~L~l~~~~~~~~~---~~~~~~L~~l~l~~~~~---------~~l~--i~~~~~~ 264 (418)
+.|+++...+..+. -..|+|++|++++|.+.... ..+.++|+.+.+..... ..+. ....+++
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred CEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 88877754443332 12688888888887664332 12335666666643210 0110 1235677
Q ss_pred ceeEEeeccccchHHHHHhhhcCCCccEEEEcc
Q 046555 265 LEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWD 297 (418)
Q Consensus 265 L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 297 (418)
|+++++++..... .....+..+++|+.|++.+
T Consensus 331 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 331 LEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSN 362 (680)
T ss_dssp CCEEECCSCCBCC-CCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCccCC-CChhHhccccCCcEEECCC
Confidence 7887777654321 1112345566777777654
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=1.7e-07 Score=100.54 Aligned_cols=248 Identities=12% Similarity=0.074 Sum_probs=132.4
Q ss_pred ccceeEEEEeceEecC------------------CCCCCc--cccccceeEEeeEEecHHHHHHHHHcCcccceeeecCC
Q 046555 125 RQKLEVLALAHNTITG------------------VEPNFQ--RFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSP 184 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~------------------~~~~~~--~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~ 184 (418)
.++|++|+|++|.+.+ .++... .+++|+.|+|+++.+.+. +...+..+++|+.|++++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCC
Confidence 4789999999988877 444434 788899999988764331 1133567899999999887
Q ss_pred c-ccc-c--ccceeE---EecCCcccEEEEEeeccceE-----EEeCCCccEEEeeccceeeEEEe-cCCceeEEEecce
Q 046555 185 E-IAM-L--DAQVTV---ELTSPTLKSIYVEAISLDKF-----ILEADSIERLHLKDCALELFELV-GRGTLKHFKIDDV 251 (418)
Q Consensus 185 ~-~~~-~--~~~~~~---~i~~~~L~~L~l~~~~~~~~-----~~~~P~L~~L~l~~~~~~~~~~~-~~~~L~~l~l~~~ 251 (418)
. +.. . .+...+ ....++|+.|.+++..+..+ ....++|+.|++++|.+..+..+ ..++|+.+.+...
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSS
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCC
Confidence 5 321 0 001000 01235788888875544332 22368899999998876644322 3366777777665
Q ss_pred eEEeec-cCCCcCC-ceeEEeeccccchHHHHHhhhcC--CCccEEEEcccccCccccccHh--HHhhcCCCCceeeeee
Q 046555 252 SVIHLD-IGDTVDN-LEIVDVSSFTIFWPKFYQMISRS--SKLKKLRLWDVVFDEDEVLDLE--TIGVCFPQLSHLSLSY 325 (418)
Q Consensus 252 ~~~~l~-i~~~~~~-L~~l~l~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~~~~--~l~~~fp~L~~L~l~~ 325 (418)
.+..+. ....+++ |+.|++++.... .+...+... ++|+.|++.+..+... ..... .-....++|+.|.+++
T Consensus 606 ~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~-ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 606 QIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSE-GRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp CCSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTT-SSSCSSCTTTCCCCCEEEEECCS
T ss_pred ccccchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCc-cccchhhhccccCCCcCEEEccC
Confidence 433221 1124556 888888766532 111122222 3477777655433211 00000 0001224788888877
Q ss_pred ecccceecccccCCCCcceEEEEecCCcccccchHHHHHH----HHhcCcccceEEEee
Q 046555 326 DLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEG----LLKRCPNLRRLVIFG 380 (418)
Q Consensus 326 ~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~----ll~~c~~Lk~L~i~~ 380 (418)
+.....-......++. |+.|++..+.+..... ++.. .+.+|++|+.|.|.+
T Consensus 683 N~L~~lp~~~~~~l~~---L~~L~Ls~N~L~~ip~-~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 683 NEIQKFPTELFATGSP---ISTIILSNNLMTSIPE-NSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp SCCCSCCHHHHHTTCC---CSEEECCSCCCSCCCT-TSSSCTTSCCTTGGGCCEEECCS
T ss_pred CcCCccCHHHHccCCC---CCEEECCCCcCCccCh-HHhccccccccccCCccEEECCC
Confidence 6333111112223343 4445666555443221 1111 123455888888854
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.48 E-value=2.5e-07 Score=87.50 Aligned_cols=204 Identities=17% Similarity=0.138 Sum_probs=121.3
Q ss_pred ccceeEEEEeceEecCCCCC-C--ccccccceeEEeeEEecHH--HHHHHHH-cCcccceeeecCCcccccccceeEEec
Q 046555 125 RQKLEVLALAHNTITGVEPN-F--QRFPCLKSLSLSYVSISAL--DLSLLLT-ACQKIEILELVSPEIAMLDAQVTVELT 198 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~-~--~~~p~L~~L~L~~v~~~~~--~l~~ll~-~cp~Le~L~l~~~~~~~~~~~~~~~i~ 198 (418)
.++|++|+|++|.+.+..|. . ..+++|+.|+|++..+++. .+..+-. ..|+|+.|++++|.+....
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-------- 165 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS-------- 165 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC--------
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch--------
Confidence 47899999999988764332 2 6789999999998877653 3333221 1389999999986542111
Q ss_pred CCcccEEEEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccch-
Q 046555 199 SPTLKSIYVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFW- 277 (418)
Q Consensus 199 ~~~L~~L~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~- 277 (418)
... .-..++|++|++++|.+... ...........+++|++|++++.....
T Consensus 166 ~~~--------------~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 216 (312)
T 1wwl_A 166 CEQ--------------VRVFPALSTLDLSDNPELGE---------------RGLISALCPLKFPTLQVLALRNAGMETP 216 (312)
T ss_dssp TTT--------------CCCCSSCCEEECCSCTTCHH---------------HHHHHHSCTTSCTTCCEEECTTSCCCCH
T ss_pred HHH--------------hccCCCCCEEECCCCCcCcc---------------hHHHHHHHhccCCCCCEEECCCCcCcch
Confidence 011 11356888888888753100 000000011356778888887665431
Q ss_pred -HHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccc
Q 046555 278 -PKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVIS 356 (418)
Q Consensus 278 -~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~ 356 (418)
......+...++|+.|++.+..+.... ........++|++|.++++... .++. ..+ ++|+.|++..+.++
T Consensus 217 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~Ls~N~l~-~ip~---~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 217 SGVCSALAAARVQLQGLDLSHNSLRDAA---GAPSCDWPSQLNSLNLSFTGLK-QVPK---GLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp HHHHHHHHHTTCCCSEEECTTSCCCSSC---CCSCCCCCTTCCEEECTTSCCS-SCCS---SCC--SEEEEEECCSSCCC
T ss_pred HHHHHHHHhcCCCCCEEECCCCcCCccc---chhhhhhcCCCCEEECCCCccC-hhhh---hcc--CCceEEECCCCCCC
Confidence 222234556789999988765443211 0011223578999999876332 1111 111 57888888887777
Q ss_pred cchHHHHHHHHhcCcccceEEEee
Q 046555 357 DLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 357 d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
+.. . +..+++|+.|.+.+
T Consensus 288 ~~p-----~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 288 RNP-----S-PDELPQVGNLSLKG 305 (312)
T ss_dssp SCC-----C-TTTSCEEEEEECTT
T ss_pred CCh-----h-HhhCCCCCEEeccC
Confidence 642 1 45688899888853
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.47 E-value=6.6e-08 Score=89.60 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=39.8
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|++++|.+.+..+ ....+++|+.|+|++..++...- ..+..+++|+.|++++|.+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCcc
Confidence 578888888887765333 45677888888887765542111 1245678888888887543
No 69
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=4.1e-08 Score=105.33 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=45.1
Q ss_pred CceeEEeeccccchHHHHHhhh--cCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeec------ccceeccc
Q 046555 264 NLEIVDVSSFTIFWPKFYQMIS--RSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDL------KDGVLHYG 335 (418)
Q Consensus 264 ~L~~l~l~~~~~~~~~~~~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~------~~~~l~~~ 335 (418)
+|+.|+++++... .+...+. .+++|+.|+|.+..+.. ++.-...+++|+.|.++++. ..+..+..
T Consensus 729 ~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 729 LLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSS-----FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp GCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred CccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCc-----cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 6666666654432 1112222 45666666665433321 11112245667777665521 11222222
Q ss_pred ccCCCCcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEee
Q 046555 336 LQGSANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 336 l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
+.+ +.+|+.|++..+.++..... -+++|+.|.|.+
T Consensus 802 l~~---L~~L~~L~Ls~N~L~~Ip~~-------l~~~L~~LdLs~ 836 (876)
T 4ecn_A 802 ITT---CPSLIQLQIGSNDIRKVDEK-------LTPQLYILDIAD 836 (876)
T ss_dssp GGG---CSSCCEEECCSSCCCBCCSC-------CCSSSCEEECCS
T ss_pred Hhc---CCCCCEEECCCCCCCccCHh-------hcCCCCEEECCC
Confidence 223 33444556655555433211 135777777753
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.46 E-value=8.7e-08 Score=90.50 Aligned_cols=203 Identities=16% Similarity=0.116 Sum_probs=118.6
Q ss_pred cceeEEEEeceEecCCCCCC---ccccccceeEEeeEEecHH--HHH-HHHHcCcccceeeecCCcccccccceeEEecC
Q 046555 126 QKLEVLALAHNTITGVEPNF---QRFPCLKSLSLSYVSISAL--DLS-LLLTACQKIEILELVSPEIAMLDAQVTVELTS 199 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~---~~~p~L~~L~L~~v~~~~~--~l~-~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~ 199 (418)
++|++|++++|.+.+..+.. ..+++|++|+|++..+++. .+. .-+..+|+|+.|++++|.+.... +
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--------~ 162 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS--------C 162 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC--------T
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh--------H
Confidence 67999999999887644322 6789999999999887642 111 12347999999999986552110 0
Q ss_pred CcccEEEEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccch-H
Q 046555 200 PTLKSIYVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFW-P 278 (418)
Q Consensus 200 ~~L~~L~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~-~ 278 (418)
.. .-..++|++|++++|.+... .+.........+++|++|+++++.... +
T Consensus 163 ~~--------------~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 163 EQ--------------VRAFPALTSLDLSDNPGLGE---------------RGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp TS--------------CCCCTTCCEEECCSCTTCHH---------------HHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred HH--------------hccCCCCCEEECCCCCCccc---------------hhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 11 11356888888888753110 000000111356777777777665431 1
Q ss_pred H-HHHhhhcCCCccEEEEcccccCccccccHhHHhh--cCCCCceeeeeeecccceecccccCCCCcceEEEEecCCccc
Q 046555 279 K-FYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGV--CFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVI 355 (418)
Q Consensus 279 ~-~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~--~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~ 355 (418)
. ....+...++|+.|++.+..+.... ++.+.. ..++|++|+++++.... ++..+ .++|+.|++.++.+
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~---p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~-----~~~L~~L~Ls~N~l 284 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRATV---NPSAPRCMWSSALNSLNLSFAGLEQ-VPKGL-----PAKLRVLDLSSNRL 284 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCCC---CSCCSSCCCCTTCCCEECCSSCCCS-CCSCC-----CSCCSCEECCSCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCccc---hhhHHhccCcCcCCEEECCCCCCCc-hhhhh-----cCCCCEEECCCCcC
Confidence 1 1223466788999988655443110 011111 13789999998864331 11111 14566677877777
Q ss_pred ccchHHHHHHHHhcCcccceEEEee
Q 046555 356 SDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 356 ~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
++.. ....+++|+.|.+.+
T Consensus 285 ~~~~------~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 285 NRAP------QPDELPEVDNLTLDG 303 (310)
T ss_dssp CSCC------CTTSCCCCSCEECSS
T ss_pred CCCc------hhhhCCCccEEECcC
Confidence 6531 135689999998863
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.45 E-value=1.9e-07 Score=92.64 Aligned_cols=234 Identities=12% Similarity=0.130 Sum_probs=141.8
Q ss_pred ceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEe-cCCcccEE
Q 046555 127 KLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVEL-TSPTLKSI 205 (418)
Q Consensus 127 ~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i-~~~~L~~L 205 (418)
....++..+..+..++. .-.+.++.|+|++..+..... ..+..+++|+.|+|++|.+..-... .+ ..++|+.|
T Consensus 44 ~~~~v~c~~~~l~~iP~--~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~---~~~~l~~L~~L 117 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD--GISTNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIG---AFNGLANLNTL 117 (440)
T ss_dssp TSCEEECCSCCCSSCCS--CCCTTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGG---GGTTCSSCCEE
T ss_pred CCCEEEeCCCCcCcCCC--CCCCCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChh---hccCCccCCEE
Confidence 35566666555654332 233789999999876653211 1256899999999999765321110 11 13789999
Q ss_pred EEEeeccceE----EEeCCCccEEEeeccceeeEEE---ecCCceeEEEeccee-EEee--ccCCCcCCceeEEeecccc
Q 046555 206 YVEAISLDKF----ILEADSIERLHLKDCALELFEL---VGRGTLKHFKIDDVS-VIHL--DIGDTVDNLEIVDVSSFTI 275 (418)
Q Consensus 206 ~l~~~~~~~~----~~~~P~L~~L~l~~~~~~~~~~---~~~~~L~~l~l~~~~-~~~l--~i~~~~~~L~~l~l~~~~~ 275 (418)
++++..+..+ ....++|++|++++|.+..+.. .+.++|+.+.+.... ...+ .....+++|+.|++++...
T Consensus 118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 9886544332 2236899999999998765432 234778888776522 1122 2234678999999887654
Q ss_pred chHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCccc
Q 046555 276 FWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVI 355 (418)
Q Consensus 276 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~ 355 (418)
.. +..+...++|+.|++.+..+... . ......+++|++|.++.+...+.....+.++ .+|+.|++..+.+
T Consensus 198 ~~---~~~~~~l~~L~~L~Ls~N~l~~~---~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~N~l 267 (440)
T 3zyj_A 198 RE---IPNLTPLIKLDELDLSGNHLSAI---R-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNL---QSLVEINLAHNNL 267 (440)
T ss_dssp SS---CCCCTTCSSCCEEECTTSCCCEE---C-TTTTTTCTTCCEEECTTCCCCEECTTSSTTC---TTCCEEECTTSCC
T ss_pred cc---ccccCCCcccCEEECCCCccCcc---C-hhhhccCccCCEEECCCCceeEEChhhhcCC---CCCCEEECCCCCC
Confidence 31 11245667888888866543311 1 1123456889999988764433322333444 4555677776666
Q ss_pred ccchHHHHHHHHhcCcccceEEEee
Q 046555 356 SDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 356 ~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
+.... ..+..+++|+.|.|.+
T Consensus 268 ~~~~~----~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 268 TLLPH----DLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCCCT----TTTSSCTTCCEEECCS
T ss_pred CccCh----hHhccccCCCEEEcCC
Confidence 55321 2345689999999964
No 72
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=3.7e-07 Score=78.42 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=68.2
Q ss_pred CceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhh---cCCCCceeeeeeecccceecccccCCC
Q 046555 264 NLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGV---CFPQLSHLSLSYDLKDGVLHYGLQGSA 340 (418)
Q Consensus 264 ~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~---~fp~L~~L~l~~~~~~~~l~~~l~~~~ 340 (418)
+|+.++++++. ..+..+..++.+++|++|+|.+|....| ..+..+.. .+++|++|++++|
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD--~gL~~L~~~~~~~~~L~~L~Ls~C-------------- 124 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIED--GCLERLSQLENLQKSMLEMEIISC-------------- 124 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCH--HHHHHHHTCHHHHHHCCEEEEESC--------------
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCH--HHHHHHHhcccccCCCCEEEcCCC--------------
Confidence 46666666665 3344444555666666666655532211 11222222 1234555554443
Q ss_pred CcceEEEEecCCcccccchHHHHHHHHhcCcccceEEEeeeeeecccchhhhhhHHHHHHHHHHhHhcceeEEEEee
Q 046555 341 NLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFGVISEIKTHEECLLLAKFTSSIVQLMRKYLHVEVQFDY 417 (418)
Q Consensus 341 ~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 417 (418)
..++| .++..+ ..|++|+.|.|. +|..+++..-.+.+++.+.|+++|++..
T Consensus 125 ------------~~ITD---~Gl~~L-~~~~~L~~L~L~----------~c~~Itd~gl~~~~L~~~lP~l~V~~~~ 175 (176)
T 3e4g_A 125 ------------GNVTD---KGIIAL-HHFRNLKYLFLS----------DLPGVKEKEKIVQAFKTSLPSLELKLDL 175 (176)
T ss_dssp ------------TTCCH---HHHHHG-GGCTTCCEEEEE----------SCTTCCCHHHHHHHHHHHCTTCEEEEEC
T ss_pred ------------CcCCH---HHHHHH-hcCCCCCEEECC----------CCCCCCchHHHHHHHHHHCCCcEEEecc
Confidence 34566 356665 469999999997 5777777656789999999999999974
No 73
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.44 E-value=2.1e-07 Score=92.75 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=141.9
Q ss_pred ceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEe-cCCcccEE
Q 046555 127 KLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVEL-TSPTLKSI 205 (418)
Q Consensus 127 ~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i-~~~~L~~L 205 (418)
....++.++..++.++. .-.++|+.|+|++..++...- ..+..+++|+.|+|++|.+..-... .+ ..++|+.|
T Consensus 55 ~~~~v~c~~~~l~~iP~--~~~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L 128 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQ--GIPSNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVG---AFNGLASLNTL 128 (452)
T ss_dssp SSCEEECCSSCCSSCCS--CCCTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCEE
T ss_pred CCcEEEECCCCcCccCC--CCCCCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChh---hccCcccCCEE
Confidence 34556655555554322 223689999999876653111 1246899999999999765321110 11 23689999
Q ss_pred EEEeeccceEE----EeCCCccEEEeeccceeeEEE---ecCCceeEEEeccee-EEee--ccCCCcCCceeEEeecccc
Q 046555 206 YVEAISLDKFI----LEADSIERLHLKDCALELFEL---VGRGTLKHFKIDDVS-VIHL--DIGDTVDNLEIVDVSSFTI 275 (418)
Q Consensus 206 ~l~~~~~~~~~----~~~P~L~~L~l~~~~~~~~~~---~~~~~L~~l~l~~~~-~~~l--~i~~~~~~L~~l~l~~~~~ 275 (418)
++++..+..+. -..++|++|++++|.+..+.. .+.++|+.+.+.... ...+ .....+++|+.|++++...
T Consensus 129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 98865444322 236899999999998765432 234678888776522 1122 2234678999999987654
Q ss_pred chHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCccc
Q 046555 276 FWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVI 355 (418)
Q Consensus 276 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~ 355 (418)
.. ...+...++|+.|++.+..+... . ......+++|++|.++.+...+.....+.+++ +|+.|++..+.+
T Consensus 209 ~~---~~~~~~l~~L~~L~Ls~N~l~~~---~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~L~~N~l 278 (452)
T 3zyi_A 209 KD---MPNLTPLVGLEELEMSGNHFPEI---R-PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA---SLVELNLAHNNL 278 (452)
T ss_dssp SS---CCCCTTCTTCCEEECTTSCCSEE---C-GGGGTTCTTCCEEECTTSCCCEECTTTTTTCT---TCCEEECCSSCC
T ss_pred cc---cccccccccccEEECcCCcCccc---C-cccccCccCCCEEEeCCCcCceECHHHhcCCC---CCCEEECCCCcC
Confidence 32 12355677899998866544311 1 11244678999999987644433333344444 455667776665
Q ss_pred ccchHHHHHHHHhcCcccceEEEee
Q 046555 356 SDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 356 ~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
+.... ..+..+++|+.|.|.+
T Consensus 279 ~~~~~----~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 279 SSLPH----DLFTPLRYLVELHLHH 299 (452)
T ss_dssp SCCCT----TSSTTCTTCCEEECCS
T ss_pred CccCh----HHhccccCCCEEEccC
Confidence 54321 2345689999999964
No 74
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.43 E-value=6.1e-08 Score=66.08 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=32.5
Q ss_pred CCCCcHHHHHHHHccCCccceeeecccccchHHHHHc
Q 046555 1 MEQLPVEVIGNILSRLGGARDVVIASATCKKWQEAYR 37 (418)
Q Consensus 1 is~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~ 37 (418)
++.||+|++.+||++|| .++.+.+++|||+|+.+..
T Consensus 9 ~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHT
T ss_pred HHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhC
Confidence 57899999999999999 5788889999999999865
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.43 E-value=4.1e-08 Score=93.61 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=56.8
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
++|++|+|++|.+....+ ....+++|++|+|++..+++.. ...+..+++|+.|++++|.+..-... + .++|+.
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~----~-~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLVEIPPN----L-PSSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCCCSCCSS----C-CTTCCE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcCCccCcc----c-cccCCE
Confidence 567777777776655322 3566777777777766544211 11245677777777777654311111 1 156777
Q ss_pred EEEEeeccceEE----EeCCCccEEEeeccce
Q 046555 205 IYVEAISLDKFI----LEADSIERLHLKDCAL 232 (418)
Q Consensus 205 L~l~~~~~~~~~----~~~P~L~~L~l~~~~~ 232 (418)
|.+++..+..+. -..++|+.|+++++.+
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 776644333221 2256777777777654
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.42 E-value=8.5e-08 Score=90.61 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=106.8
Q ss_pred CCceEEEEeecCCCCccccccccccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeee
Q 046555 102 ETLRRLYYNVRTTPNVNILEICGRQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILEL 181 (418)
Q Consensus 102 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l 181 (418)
.+++.|++....-.....+ ...++|++|+|++|.+.+. +....+++|+.|+|+++.+++-. . +..+|+|+.|++
T Consensus 63 ~~L~~L~L~~n~i~~~~~~--~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAPL--KNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVT--P-LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCCGGG--TTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEECTTSCCCCCG--G-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCChhH--ccCCCCCEEEccCCcCCCc-hhhcCCCCCCEEECCCCCCCCch--h-hcCCCCCCEEEC
Confidence 7899999941111111012 2348999999999988775 34678899999999998776521 2 678999999999
Q ss_pred cCCcccccccceeEEecCCcccEEEEEeeccceE--EEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccC
Q 046555 182 VSPEIAMLDAQVTVELTSPTLKSIYVEAISLDKF--ILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIG 259 (418)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~--~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~ 259 (418)
++|.+...... -..++|+.|.+++..+..+ ....|+|+.|++++|.+..+.. .
T Consensus 137 ~~n~l~~~~~l----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---------------------l 191 (308)
T 1h6u_A 137 DLNQITNISPL----AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP---------------------L 191 (308)
T ss_dssp CSSCCCCCGGG----GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---------------------G
T ss_pred CCCccCcCccc----cCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh---------------------h
Confidence 99876432221 1247899999886533321 2236899999999886532210 1
Q ss_pred CCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccc
Q 046555 260 DTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVV 299 (418)
Q Consensus 260 ~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 299 (418)
..+++|+++++++....... .+..+++|+.|++.+..
T Consensus 192 ~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEE
T ss_pred cCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCe
Confidence 24567777777665433211 25667788888776543
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.41 E-value=2.6e-07 Score=86.53 Aligned_cols=143 Identities=20% Similarity=0.205 Sum_probs=78.7
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++|++|+|++|.+.+..+ ...+++|+.|+|++..+++- .. +..+++|+.|++.+|.+..- +.
T Consensus 68 ~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i~~~----------~~---- 129 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNGISDI----------NG---- 129 (291)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSCCCCC----------GG----
T ss_pred CCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCcCCCC----------hh----
Confidence 566666666666555433 45566666666665554431 11 45566666666665433110 00
Q ss_pred EEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhhh
Q 046555 206 YVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMIS 285 (418)
Q Consensus 206 ~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~ 285 (418)
....|+|+.|++++|.+..+ .....+++|+.|++++....... .+.
T Consensus 130 ----------l~~l~~L~~L~l~~n~l~~~---------------------~~l~~l~~L~~L~L~~N~l~~~~---~l~ 175 (291)
T 1h6t_A 130 ----------LVHLPQLESLYLGNNKITDI---------------------TVLSRLTKLDTLSLEDNQISDIV---PLA 175 (291)
T ss_dssp ----------GGGCTTCCEEECCSSCCCCC---------------------GGGGGCTTCSEEECCSSCCCCCG---GGT
T ss_pred ----------hcCCCCCCEEEccCCcCCcc---------------------hhhccCCCCCEEEccCCccccch---hhc
Confidence 01256788888887754321 11224567777777765433211 156
Q ss_pred cCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeee
Q 046555 286 RSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 286 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~ 326 (418)
.+++|+.|.+.+..+.. ... ...+++|+.|.++.+
T Consensus 176 ~l~~L~~L~L~~N~i~~-----l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD-----LRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp TCTTCCEEECCSSCCCB-----CGG-GTTCTTCSEEEEEEE
T ss_pred CCCccCEEECCCCcCCC-----Chh-hccCCCCCEEECcCC
Confidence 67788888776543321 112 345678888888765
No 78
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.41 E-value=5e-08 Score=101.64 Aligned_cols=250 Identities=9% Similarity=0.061 Sum_probs=139.8
Q ss_pred ccceeEEEEeceEecC------------------CCCCCc--cccccceeEEeeEEecHHHHHHHHHcCcccceeeecCC
Q 046555 125 RQKLEVLALAHNTITG------------------VEPNFQ--RFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSP 184 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~------------------~~~~~~--~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~ 184 (418)
.++|++|+|++|.+.+ .++... .+++|+.|+|+++.+.+. +...+..+++|+.|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCC
Confidence 4899999999999887 444455 799999999998865431 1133568999999999997
Q ss_pred c-ccc-ccc--ceeE--EecCCcccEEEEEeeccceE-----EEeCCCccEEEeecccee-eEEE-ecCCceeEEEecce
Q 046555 185 E-IAM-LDA--QVTV--ELTSPTLKSIYVEAISLDKF-----ILEADSIERLHLKDCALE-LFEL-VGRGTLKHFKIDDV 251 (418)
Q Consensus 185 ~-~~~-~~~--~~~~--~i~~~~L~~L~l~~~~~~~~-----~~~~P~L~~L~l~~~~~~-~~~~-~~~~~L~~l~l~~~ 251 (418)
. +.. ... ...+ ....++|+.|.++...+..+ .-..++|+.|++++|.+. .+.. ...++|+.+.+...
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 6 421 000 0000 00126889998886544432 224689999999998776 3431 22356777777766
Q ss_pred eEEeecc-CCCcCC-ceeEEeeccccchHHHHHhhhc--CCCccEEEEcccccCccccccHh---HHhhcCCCCceeeee
Q 046555 252 SVIHLDI-GDTVDN-LEIVDVSSFTIFWPKFYQMISR--SSKLKKLRLWDVVFDEDEVLDLE---TIGVCFPQLSHLSLS 324 (418)
Q Consensus 252 ~~~~l~i-~~~~~~-L~~l~l~~~~~~~~~~~~~l~~--~~~L~~L~L~~~~~~~~~~~~~~---~l~~~fp~L~~L~l~ 324 (418)
.+..+.- ...+++ |++|++++.... .+...+.. .++|+.|++.+..+.......+. .-....++|++|.++
T Consensus 364 ~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 364 QITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp EEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred ccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 5543311 124566 888888876543 11112222 23677777765443311000000 000023478888888
Q ss_pred eecccceecccccCCCCcceEEEEecCCcccccchHHHHHH---HHhcCcccceEEEee
Q 046555 325 YDLKDGVLHYGLQGSANLENVAVLELGWPVISDLFSHWVEG---LLKRCPNLRRLVIFG 380 (418)
Q Consensus 325 ~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~~~~l~~---ll~~c~~Lk~L~i~~ 380 (418)
++.....-......++ +|+.|++..+.+.......... .++++++|+.|.+.+
T Consensus 442 ~N~l~~lp~~~~~~l~---~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 442 NNQISKFPKELFSTGS---PLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp SSCCCSCCTHHHHTTC---CCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred CCccCcCCHHHHccCC---CCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC
Confidence 7633321111223334 4445666665554322110000 022344888888853
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.39 E-value=5.7e-08 Score=92.67 Aligned_cols=150 Identities=10% Similarity=-0.036 Sum_probs=70.7
Q ss_pred CccEEEeeccceeeEEEecCCceeEEEecceeEEeec--cCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEccc
Q 046555 221 SIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLD--IGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDV 298 (418)
Q Consensus 221 ~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~--i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 298 (418)
+|++|+++++.+..+...-.++|+.+.+....+..+. ....+++|+.|++++..... .....+..+++|+.|++.+.
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSS
T ss_pred ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCC
Confidence 4555555555443221111134444444333222211 12356778888887654321 01123556788999888765
Q ss_pred ccCccccccHhHHhhcCCCCceeeeeeecccceecccccCC---CCcceEEEEecCCcccc--cchHHHHHHHHhcCccc
Q 046555 299 VFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGS---ANLENVAVLELGWPVIS--DLFSHWVEGLLKRCPNL 373 (418)
Q Consensus 299 ~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~---~~Le~l~vl~l~~~~~~--d~~~~~l~~ll~~c~~L 373 (418)
.+. .+..-...+++|++|.++++...+.-...+.+. .....++.+++..+.+. +.. .....++++|
T Consensus 252 ~l~-----~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~----~~~~~~l~~L 322 (332)
T 2ft3_A 252 KLS-----RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ----PATFRCVTDR 322 (332)
T ss_dssp CCC-----BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSC----GGGGTTBCCS
T ss_pred cCe-----ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccC----cccccccchh
Confidence 433 111113457889999998763322111111111 01223334555443332 111 1224568999
Q ss_pred ceEEEee
Q 046555 374 RRLVIFG 380 (418)
Q Consensus 374 k~L~i~~ 380 (418)
+.+.+.+
T Consensus 323 ~~l~l~~ 329 (332)
T 2ft3_A 323 LAIQFGN 329 (332)
T ss_dssp TTEEC--
T ss_pred hhhhccc
Confidence 9998863
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.36 E-value=6.4e-08 Score=89.68 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=37.2
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|++++|.+.+. +....+++|+.|+|++..+++.. ...+..+++|+.|++.+|.+
T Consensus 63 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l 121 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQL 121 (272)
T ss_dssp TTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC
T ss_pred CCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCcC
Confidence 6777777777776653 23556777777777766554211 11245677777777777544
No 81
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.36 E-value=4.4e-07 Score=85.28 Aligned_cols=238 Identities=14% Similarity=0.129 Sum_probs=144.2
Q ss_pred eEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEEEEE
Q 046555 129 EVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSIYVE 208 (418)
Q Consensus 129 ~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L~l~ 208 (418)
+.++.+++.++..+. ...++|++|+|++..++.-. ..++..+|+|+.|+++++.+.............++|+.|+++
T Consensus 10 ~~l~c~~~~l~~ip~--~~~~~l~~L~L~~n~l~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT--GIPSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCS--CCCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCC--CCCCCCCEEECCCCccCccC-HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 456677666655432 23478999999987765311 123568999999999987653211000001124789999988
Q ss_pred eeccceE---EEeCCCccEEEeeccceeeEE----EecCCceeEEEecceeEEee--ccCCCcCCceeEEeeccccchHH
Q 046555 209 AISLDKF---ILEADSIERLHLKDCALELFE----LVGRGTLKHFKIDDVSVIHL--DIGDTVDNLEIVDVSSFTIFWPK 279 (418)
Q Consensus 209 ~~~~~~~---~~~~P~L~~L~l~~~~~~~~~----~~~~~~L~~l~l~~~~~~~l--~i~~~~~~L~~l~l~~~~~~~~~ 279 (418)
+..+..+ ....++|++|+++++.+..+. ..+.++|+.+.+....+... .....+++|+++++++.......
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 6544332 334799999999998765432 22346788888877654432 22335789999999876543212
Q ss_pred HHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccch
Q 046555 280 FYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLF 359 (418)
Q Consensus 280 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~ 359 (418)
....+...++|+.|++.+..+... . ......+++|++|.++++...+.....+.. +.+|+.|++..+.+.+..
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~---~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQL---S-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKC---LNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEE---C-TTTTTTCTTCCEEECTTSCCSBCCSGGGTT---CTTCCEEECTTSCCCBCS
T ss_pred chhHHhhCcCCCEEECCCCCcCCc---C-HHHhcCCCCCCEEECCCCccCccChhhccC---cccCCEeECCCCCCcccC
Confidence 223456678999998876544311 0 112345688999999876433222222333 345666778777665532
Q ss_pred HHHHHHHHhcC-cccceEEEee
Q 046555 360 SHWVEGLLKRC-PNLRRLVIFG 380 (418)
Q Consensus 360 ~~~l~~ll~~c-~~Lk~L~i~~ 380 (418)
.. .+..+ ++|+.|.+.+
T Consensus 240 ~~----~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 240 KQ----ELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp SS----SCCCCCTTCCEEECTT
T ss_pred HH----HHHhhhccCCEEEccC
Confidence 11 12345 4899999964
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.31 E-value=1.9e-07 Score=82.11 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=21.2
Q ss_pred CcCCceeEEeeccccchHHHHHhhhcCCCccEEEEccc
Q 046555 261 TVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDV 298 (418)
Q Consensus 261 ~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 298 (418)
.+++|++++++++.... ...+..+++|+.|.+.+-
T Consensus 157 ~l~~L~~L~l~~n~i~~---~~~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 157 TLPELKSLNIQFDGVHD---YRGIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp GCSSCCEEECTTBCCCC---CTTGGGCSSCCEEEECBC
T ss_pred CCCCCCEEECCCCCCcC---hHHhccCCCCCEEEeeCc
Confidence 45677777776654322 114556788888877543
No 83
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.31 E-value=2.6e-07 Score=95.50 Aligned_cols=143 Identities=20% Similarity=0.206 Sum_probs=73.9
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++|+.|+|++|.+.+..+ ...+++|+.|+|+++.+.+-. -+..+++|+.|+|++|.+... +.
T Consensus 65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l----------~~---- 126 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDI----------NG---- 126 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEECTTSCCCCC----------GG----
T ss_pred CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEecCCCCCCC----------cc----
Confidence 667777776666655433 456666666666666554311 245566666666666433110 00
Q ss_pred EEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhhh
Q 046555 206 YVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMIS 285 (418)
Q Consensus 206 ~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~ 285 (418)
....|+|+.|++++|.+..+.. ...+++|+.|+++++..... .. +.
T Consensus 127 ----------l~~l~~L~~L~Ls~N~l~~l~~---------------------l~~l~~L~~L~Ls~N~l~~~--~~-l~ 172 (605)
T 1m9s_A 127 ----------LVHLPQLESLYLGNNKITDITV---------------------LSRLTKLDTLSLEDNQISDI--VP-LA 172 (605)
T ss_dssp ----------GGGCTTCSEEECCSSCCCCCGG---------------------GGSCTTCSEEECCSSCCCCC--GG-GT
T ss_pred ----------ccCCCccCEEECCCCccCCchh---------------------hcccCCCCEEECcCCcCCCc--hh-hc
Confidence 1135788888888876543211 12345556665555433211 01 44
Q ss_pred cCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeee
Q 046555 286 RSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 286 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~ 326 (418)
.+++|+.|+|.+..+.. ++. ...+++|+.|.++.+
T Consensus 173 ~l~~L~~L~Ls~N~i~~-----l~~-l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISD-----LRA-LAGLKNLDVLELFSQ 207 (605)
T ss_dssp TCTTCCEEECCSSCCCB-----CGG-GTTCTTCSEEECCSE
T ss_pred cCCCCCEEECcCCCCCC-----ChH-HccCCCCCEEEccCC
Confidence 55666666655433221 111 234556666666543
No 84
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.31 E-value=1.7e-07 Score=87.20 Aligned_cols=173 Identities=15% Similarity=0.178 Sum_probs=88.7
Q ss_pred cceeEEEEeceEecCC-CCCCccccccceeEEeeEE-ecHHHHHHHHHcCcccceeeecCCcccccccceeEEe-cCCcc
Q 046555 126 QKLEVLALAHNTITGV-EPNFQRFPCLKSLSLSYVS-ISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVEL-TSPTL 202 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~-~~~~~~~p~L~~L~L~~v~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i-~~~~L 202 (418)
++|++|+|++|.+.+. ......+++|++|+|++.. +.... ...+..+++|+.|++.+|.+...... .+ ..++|
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L 131 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPG---LFRGLAAL 131 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTC
T ss_pred CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHh---HhhCCcCC
Confidence 6777777777766553 2234566777777777654 33211 11245677777777777554211100 01 12455
Q ss_pred cEEEEEeeccceEE----EeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchH
Q 046555 203 KSIYVEAISLDKFI----LEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWP 278 (418)
Q Consensus 203 ~~L~l~~~~~~~~~----~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~ 278 (418)
+.|.+++..+..+. -..|+|++|++++|.+..+. ......+++|+.+++++.....
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~~~~l~~L~~L~l~~n~l~~- 191 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-------------------ERAFRGLHSLDRLLLHQNRVAH- 191 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-------------------TTTTTTCTTCCEEECCSSCCCE-
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-------------------HHHhcCccccCEEECCCCcccc-
Confidence 55555533222211 12466777777666543211 0112245667777766544321
Q ss_pred HHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeee
Q 046555 279 KFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 279 ~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~ 326 (418)
.....+..+++|+.|++.+..+.. ... .....+++|++|+++++
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~---~~~-~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSA---LPT-EALAPLRALQYLRLNDN 235 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSC---CCH-HHHTTCTTCCEEECCSS
T ss_pred cCHhHccCcccccEeeCCCCcCCc---CCH-HHcccCcccCEEeccCC
Confidence 011234556777877776543321 111 22345678888888765
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.27 E-value=8.9e-07 Score=88.33 Aligned_cols=30 Identities=13% Similarity=0.105 Sum_probs=17.7
Q ss_pred ceEEEEecCCcccccchHHHHHHHHhcCcccceEEEee
Q 046555 343 ENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 343 e~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
..|+.|+++.+.+..... .+++|+.|.+.+
T Consensus 337 ~~L~~L~L~~N~l~~lp~--------~l~~L~~L~L~~ 366 (454)
T 1jl5_A 337 PRLERLIASFNHLAEVPE--------LPQNLKQLHVEY 366 (454)
T ss_dssp TTCCEEECCSSCCSCCCC--------CCTTCCEEECCS
T ss_pred CcCCEEECCCCccccccc--------hhhhccEEECCC
Confidence 445556666555554321 367888888853
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.21 E-value=1.1e-06 Score=79.46 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=28.0
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEE-ecHHHHHHHHHcCcccceeeecC
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVS-ISALDLSLLLTACQKIEILELVS 183 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~-~~~~~l~~ll~~cp~Le~L~l~~ 183 (418)
++|+.|+|++|.+....+ ....+++|++|+|++.. ++.-.- ..+.++++|+.|++.+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCC
Confidence 456666666665544222 23455666666665543 321000 0124566666666655
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.18 E-value=1.2e-06 Score=87.39 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=32.1
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|++++|.+.+.+ ....+++|+.|++++..+++ + -...++|+.|++++|.+
T Consensus 173 ~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~--l---~~~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK--L---PDLPLSLESIVAGNNIL 227 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--C---CCCCTTCCEEECCSSCC
T ss_pred ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc--C---CCCcCcccEEECcCCcC
Confidence 46777777777766532 35666777777776655442 0 01224566666665543
No 88
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.18 E-value=6.2e-07 Score=82.68 Aligned_cols=140 Identities=21% Similarity=0.258 Sum_probs=77.0
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++|++|++++|.+.... ....+++|+.|+|++..+++..- +..+|+|+.|++++|.+....+.. .++|+.|
T Consensus 41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~-----~~~L~~L 111 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIP-----SACLSRL 111 (263)
T ss_dssp TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCC-----CSSCCEE
T ss_pred CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCccc-----cCcccEE
Confidence 66777777777666543 35566777777777766553211 566777777777776553221111 1555555
Q ss_pred EEEeeccceE--EEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHh
Q 046555 206 YVEAISLDKF--ILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQM 283 (418)
Q Consensus 206 ~l~~~~~~~~--~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~ 283 (418)
.+++..+..+ ....++|+.|++++|.+..+ +....+++|+.|++++...... ..
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~---------------------~~l~~l~~L~~L~L~~N~i~~~---~~ 167 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSI---------------------VMLGFLSKLEVLDLHGNEITNT---GG 167 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC---------------------GGGGGCTTCCEEECTTSCCCBC---TT
T ss_pred EccCCccCCChhhcCcccccEEECCCCcCCCC---------------------hHHccCCCCCEEECCCCcCcch---HH
Confidence 5554322211 11256777777776654321 1112456666666665543221 34
Q ss_pred hhcCCCccEEEEccc
Q 046555 284 ISRSSKLKKLRLWDV 298 (418)
Q Consensus 284 l~~~~~L~~L~L~~~ 298 (418)
+..+++|+.|++.+.
T Consensus 168 l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQ 182 (263)
T ss_dssp STTCCCCCEEEEEEE
T ss_pred hccCCCCCEEeCCCC
Confidence 555677777776554
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.17 E-value=3.2e-07 Score=84.76 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=32.2
Q ss_pred CcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeec
Q 046555 261 TVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDL 327 (418)
Q Consensus 261 ~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~ 327 (418)
.+++|+.+++++..... .....+...++|+.|++.+..+... . ......+++|++|.++.+.
T Consensus 155 ~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~---~-~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRV---P-EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCC---C-TTTTTTCTTCCEEECCSSC
T ss_pred CCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcC---C-HHHhccccCCCEEEecCCC
Confidence 45667777666543221 0011244567777777765433211 1 1123356788888887653
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.15 E-value=2.3e-07 Score=87.76 Aligned_cols=194 Identities=19% Similarity=0.194 Sum_probs=105.8
Q ss_pred CCceEEEEe---e--cCCCCccccccccccceeEEEEeceEecCCCCCCccc-----cccceeEEeeEEecHHHHHHHHH
Q 046555 102 ETLRRLYYN---V--RTTPNVNILEICGRQKLEVLALAHNTITGVEPNFQRF-----PCLKSLSLSYVSISALDLSLLLT 171 (418)
Q Consensus 102 ~~l~~L~l~---~--~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~-----p~L~~L~L~~v~~~~~~l~~ll~ 171 (418)
.++++|++. . ..+.. ++. ...++|++|+|++|.+.+.+.....+ ++|+.|+|++..+.+..- ..+.
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~ 170 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPP--LLE-ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVR 170 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCC--SSS-CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCC
T ss_pred CCccEEEccCCcccchhHHH--HHH-hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhc
Confidence 789999994 2 22222 211 23478999999999887752222334 889999998877653211 1245
Q ss_pred cCcccceeeecCCcccccccce-eEE-ecCCcccEEEEEeeccce---EE----EeCCCccEEEeeccceeeEEEecCCc
Q 046555 172 ACQKIEILELVSPEIAMLDAQV-TVE-LTSPTLKSIYVEAISLDK---FI----LEADSIERLHLKDCALELFELVGRGT 242 (418)
Q Consensus 172 ~cp~Le~L~l~~~~~~~~~~~~-~~~-i~~~~L~~L~l~~~~~~~---~~----~~~P~L~~L~l~~~~~~~~~~~~~~~ 242 (418)
.+++|+.|++++|.+....+.. .+. -..++|+.|.+++..+.. +. ...++|++|++++|.+....
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------ 244 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA------ 244 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC------
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc------
Confidence 7899999999987642211100 000 113566666666443321 11 12367777777776543210
Q ss_pred eeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceee
Q 046555 243 LKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLS 322 (418)
Q Consensus 243 L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~ 322 (418)
........++|++|++++.... .+...+ .++|+.|++.+..+.+. +. ...+++|++|.
T Consensus 245 ------------~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~--~~~L~~L~Ls~N~l~~~-----p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 245 ------------GAPSCDWPSQLNSLNLSFTGLK--QVPKGL--PAKLSVLDLSYNRLDRN-----PS-PDELPQVGNLS 302 (312)
T ss_dssp ------------CCSCCCCCTTCCEEECTTSCCS--SCCSSC--CSEEEEEECCSSCCCSC-----CC-TTTSCEEEEEE
T ss_pred ------------chhhhhhcCCCCEEECCCCccC--hhhhhc--cCCceEEECCCCCCCCC-----hh-HhhCCCCCEEe
Confidence 0111223567777777765432 111111 15777777655433211 11 34567888888
Q ss_pred eeeec
Q 046555 323 LSYDL 327 (418)
Q Consensus 323 l~~~~ 327 (418)
++++.
T Consensus 303 L~~N~ 307 (312)
T 1wwl_A 303 LKGNP 307 (312)
T ss_dssp CTTCT
T ss_pred ccCCC
Confidence 87753
No 91
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=6.1e-07 Score=77.07 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=64.8
Q ss_pred cceeEEEEeceEecCCC-CCCccccccceeEEeeEE-ecHHHHHHHHH---cCcccceeeecCCcccccccceeEEecCC
Q 046555 126 QKLEVLALAHNTITGVE-PNFQRFPCLKSLSLSYVS-ISALDLSLLLT---ACQKIEILELVSPEIAMLDAQVTVELTSP 200 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~-~~~~~~p~L~~L~L~~v~-~~~~~l~~ll~---~cp~Le~L~l~~~~~~~~~~~~~~~i~~~ 200 (418)
..|+.|++++|.+++.. ....+|++|++|+|++|. ++|.++..+.. .||.||.|+|++|.-.++.|...+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L----- 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL----- 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-----
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-----
Confidence 57999999999887721 123689999999999995 99999999876 389999999999753344443211
Q ss_pred cccEEEEEeeccceEEEeCCCccEEEeeccc
Q 046555 201 TLKSIYVEAISLDKFILEADSIERLHLKDCA 231 (418)
Q Consensus 201 ~L~~L~l~~~~~~~~~~~~P~L~~L~l~~~~ 231 (418)
..+|+|++|++++|.
T Consensus 136 ----------------~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 ----------------HHFRNLKYLFLSDLP 150 (176)
T ss_dssp ----------------GGCTTCCEEEEESCT
T ss_pred ----------------hcCCCCCEEECCCCC
Confidence 136788888888885
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.12 E-value=1.3e-06 Score=81.68 Aligned_cols=79 Identities=25% Similarity=0.300 Sum_probs=56.5
Q ss_pred CCceEEEEeecCCCCccccccccccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeee
Q 046555 102 ETLRRLYYNVRTTPNVNILEICGRQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILEL 181 (418)
Q Consensus 102 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l 181 (418)
.+++.|++....-.. +......++|++|++++|.+.+.. ....+++|+.|+|++..+++- .-+..+|+|+.|++
T Consensus 68 ~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCC--CcccccCCCCCEEECCCCcCCCCh-hhccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEc
Confidence 788888884111111 111133489999999999887743 367889999999998877652 12668999999999
Q ss_pred cCCcc
Q 046555 182 VSPEI 186 (418)
Q Consensus 182 ~~~~~ 186 (418)
++|.+
T Consensus 142 ~~n~l 146 (291)
T 1h6t_A 142 GNNKI 146 (291)
T ss_dssp CSSCC
T ss_pred cCCcC
Confidence 98765
No 93
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.09 E-value=4.1e-07 Score=88.36 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=22.5
Q ss_pred HhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeee
Q 046555 282 QMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 282 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~ 326 (418)
..+...++|+.|+|.+..+.+.....+.......++|++|+++++
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 344555667777665544332111122222334567777777765
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.06 E-value=8.8e-07 Score=81.80 Aligned_cols=178 Identities=16% Similarity=0.172 Sum_probs=93.4
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
+++++|+|++|.+....+ ....+++|+.|+|++..++.-. ..++..+++|+.|+++++.+..-. ..
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l~~~~--------~~---- 103 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKLQALP--------IG---- 103 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCCCCCC--------TT----
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcCCcCC--------Hh----
Confidence 567777777776655432 3456677777777665443210 112345677777777664331100 00
Q ss_pred EEEEeeccceEEEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhh
Q 046555 205 IYVEAISLDKFILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMI 284 (418)
Q Consensus 205 L~l~~~~~~~~~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l 284 (418)
..-..++|++|+++++.+..+. ......+++|++|++++..... .....+
T Consensus 104 ----------~~~~l~~L~~L~l~~n~l~~~~-------------------~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~ 153 (270)
T 2o6q_A 104 ----------VFDQLVNLAELRLDRNQLKSLP-------------------PRVFDSLTKLTYLSLGYNELQS-LPKGVF 153 (270)
T ss_dssp ----------TTTTCSSCCEEECCSSCCCCCC-------------------TTTTTTCTTCCEEECCSSCCCC-CCTTTT
T ss_pred ----------HcccccCCCEEECCCCccCeeC-------------------HHHhCcCcCCCEEECCCCcCCc-cCHhHc
Confidence 0012467777777776542110 0112356777888777654321 011235
Q ss_pred hcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCc
Q 046555 285 SRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWP 353 (418)
Q Consensus 285 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~ 353 (418)
...++|+.|++.+..+... .. .....+++|++|+++.+...+.-...+..++ +|+.+++..+
T Consensus 154 ~~l~~L~~L~L~~n~l~~~---~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~---~L~~L~l~~N 215 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRV---PE-GAFDKLTELKTLKLDNNQLKRVPEGAFDSLE---KLKMLQLQEN 215 (270)
T ss_dssp TTCTTCCEEECCSSCCSCC---CT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT---TCCEEECCSS
T ss_pred cCCcccceeEecCCcCcEe---Ch-hHhccCCCcCEEECCCCcCCcCCHHHhcccc---CCCEEEecCC
Confidence 6678999999876543311 11 1234568999999987643332222334444 4445666544
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.04 E-value=2.3e-06 Score=87.64 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=41.7
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++|+.|+|++|.+...+ ..+++|+.|+|++..++. +.. -+.+|+.|++++|.+.. ... ..++|+.|
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip~---l~~~L~~L~Ls~N~l~~---lp~---~l~~L~~L 145 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LPE---LPASLKHLDVDNNQLTM---LPE---LPALLEYI 145 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC---CCC---CCTTCCEE
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cch---hhcCCCEEECCCCcCCC---CCC---cCccccEE
Confidence 45666666666555322 335556666665554432 111 11256666666554421 111 23445555
Q ss_pred EEEeeccceEEEeCCCccEEEeeccce
Q 046555 206 YVEAISLDKFILEADSIERLHLKDCAL 232 (418)
Q Consensus 206 ~l~~~~~~~~~~~~P~L~~L~l~~~~~ 232 (418)
++++..+..+--..++|+.|++++|.+
T Consensus 146 ~Ls~N~l~~lp~~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 146 NADNNQLTMLPELPTSLEVLSVRNNQL 172 (571)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred eCCCCccCcCCCcCCCcCEEECCCCCC
Confidence 554332221111234555555555543
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.01 E-value=1.8e-06 Score=89.18 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=78.0
Q ss_pred CCceEEEEeecCCCCccccccccccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeee
Q 046555 102 ETLRRLYYNVRTTPNVNILEICGRQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILEL 181 (418)
Q Consensus 102 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l 181 (418)
++++.|++....-.. +.+...+++|+.|+|++|.+.+.. ....+++|+.|+|+++.+.+- . -+..+|+|+.|+|
T Consensus 65 ~~L~~L~Ls~N~l~~--~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC--G-GGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCC--ChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC--c-cccCCCccCEEEC
Confidence 788999884111111 111134589999999999887743 567899999999998877642 1 2678999999999
Q ss_pred cCCcccccccceeEEecCCcccEEEEEeeccceE--EEeCCCccEEEeecccee
Q 046555 182 VSPEIAMLDAQVTVELTSPTLKSIYVEAISLDKF--ILEADSIERLHLKDCALE 233 (418)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~~~L~~L~l~~~~~~~~--~~~~P~L~~L~l~~~~~~ 233 (418)
++|.+...... -..++|+.|.++...+..+ ....|+|+.|++++|.+.
T Consensus 139 s~N~l~~l~~l----~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 139 GNNKITDITVL----SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CSSCCCCCGGG----GSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred CCCccCCchhh----cccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCC
Confidence 99765322111 0135677776664322211 123567777777766543
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.99 E-value=3.6e-07 Score=86.22 Aligned_cols=214 Identities=15% Similarity=0.116 Sum_probs=112.7
Q ss_pred eeeEEEEecCCCCCChHHHHHHHHHhh-CCceEEEEe---ec-CCCCccccccccccceeEEEEeceEecCCCC-----C
Q 046555 75 LQGLSILMDDVDEFSASTVIAWLMYTR-ETLRRLYYN---VR-TTPNVNILEICGRQKLEVLALAHNTITGVEP-----N 144 (418)
Q Consensus 75 l~~l~l~~~~~~~~~~~~v~~wl~~~~-~~l~~L~l~---~~-~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-----~ 144 (418)
++++.+.... +....+........ .++++|++. .. ..+. .++. ...++|++|+|++|.+.+..+ .
T Consensus 66 l~~l~l~~~~---~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 66 VRRLTVGAAQ---VPAQLLVGALRVLAYSRLKELTLEDLKITGTMPP-LPLE-ATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCEEEECSCC---CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCC-CSSS-CCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred eeEEEEeCCc---CCHHHHHHHHHhcccCceeEEEeeCCEeccchhh-hhhh-ccCCCCCEEEeecccccchhhhhHHHH
Confidence 5666655321 23344444444444 679999984 11 1111 0110 123677777777777655221 1
Q ss_pred CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccce--eEEecCCcccEEEEEeeccceE-------
Q 046555 145 FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQV--TVELTSPTLKSIYVEAISLDKF------- 215 (418)
Q Consensus 145 ~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~--~~~i~~~~L~~L~l~~~~~~~~------- 215 (418)
...+++|++|+|++..+.... ...+..+++|+.|++++|.+....+.. ...-..++|+.|.+++..+..+
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred hhhccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 124677777777776553211 112346777777777776542211110 0001235667776665433211
Q ss_pred EEeCCCccEEEeeccceeeEE--Ee-c---CCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhhhcCCC
Q 046555 216 ILEADSIERLHLKDCALELFE--LV-G---RGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMISRSSK 289 (418)
Q Consensus 216 ~~~~P~L~~L~l~~~~~~~~~--~~-~---~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~ 289 (418)
.-..++|++|++++|.+.... .+ . .++|+.+.+....+..+.- ...++|+.|++++.....- ..+..+++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~~~~L~~L~Ls~N~l~~~---~~~~~l~~ 295 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-GLPAKLRVLDLSSNRLNRA---PQPDELPE 295 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-CCCSCCSCEECCSCCCCSC---CCTTSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-hhcCCCCEEECCCCcCCCC---chhhhCCC
Confidence 113477888888777654331 11 1 1467777776654433221 1237899999987765421 12456788
Q ss_pred ccEEEEccc
Q 046555 290 LKKLRLWDV 298 (418)
Q Consensus 290 L~~L~L~~~ 298 (418)
|+.|++.+-
T Consensus 296 L~~L~L~~N 304 (310)
T 4glp_A 296 VDNLTLDGN 304 (310)
T ss_dssp CSCEECSST
T ss_pred ccEEECcCC
Confidence 998887643
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.96 E-value=9.7e-07 Score=81.35 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=99.5
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++++.++++++.+.+.. ....+++|+.|++++..+++-. -+..+++|+.|++++|.+...... -..++|+.|
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~l----~~l~~L~~L 90 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSPL----KDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGG----TTCSSCCEE
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChhh----ccCCCCCEE
Confidence 45666667777666533 3567899999999988766422 267899999999999765322111 012556666
Q ss_pred EEEeeccceEE-EeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccccchHHHHHhh
Q 046555 206 YVEAISLDKFI-LEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFTIFWPKFYQMI 284 (418)
Q Consensus 206 ~l~~~~~~~~~-~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~~~~~~~~~~l 284 (418)
.+++..+..+. +..++|+.|++++|.+. .++-...+++|+.|++++.....- ..+
T Consensus 91 ~L~~N~l~~l~~~~~~~L~~L~L~~N~l~---------------------~~~~l~~l~~L~~L~Ls~N~i~~~---~~l 146 (263)
T 1xeu_A 91 SVNRNRLKNLNGIPSACLSRLFLDNNELR---------------------DTDSLIHLKNLEILSIRNNKLKSI---VML 146 (263)
T ss_dssp ECCSSCCSCCTTCCCSSCCEEECCSSCCS---------------------BSGGGTTCTTCCEEECTTSCCCBC---GGG
T ss_pred ECCCCccCCcCccccCcccEEEccCCccC---------------------CChhhcCcccccEEECCCCcCCCC---hHH
Confidence 66643222100 01156666666665432 111123578888888887654321 246
Q ss_pred hcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeee
Q 046555 285 SRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYD 326 (418)
Q Consensus 285 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~ 326 (418)
..+++|+.|++.+..+.+. .....+++|+.|+++++
T Consensus 147 ~~l~~L~~L~L~~N~i~~~------~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT------GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC------TTSTTCCCCCEEEEEEE
T ss_pred ccCCCCCEEECCCCcCcch------HHhccCCCCCEEeCCCC
Confidence 6788999998876544321 12346788999999875
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.96 E-value=2e-06 Score=73.28 Aligned_cols=57 Identities=25% Similarity=0.221 Sum_probs=33.0
Q ss_pred cceeEEEEeceEec--CCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCc
Q 046555 126 QKLEVLALAHNTIT--GVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPE 185 (418)
Q Consensus 126 ~~L~~L~L~~~~l~--~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~ 185 (418)
++|++|++++|.+. ..+.....+++|+.|+|+++.+++. ..+..+|+|+.|++++|.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~ 82 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENR 82 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCc
Confidence 56677777776665 2333335566666666666655432 234456666666666644
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.95 E-value=3.8e-06 Score=78.54 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=28.8
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++++.++++++.++.+++ .-++.++.|+|++..++.... ..+..+++|+.|+++++.+
T Consensus 10 ~~l~~l~~~~~~l~~ip~--~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l 67 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPP--DLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAEL 67 (290)
T ss_dssp TTCCEEECTTSCCSSCCS--CCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCC
T ss_pred CCccEEECCCCCCCcCCC--CCCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCcc
Confidence 456666666655554322 112556666665554432111 1134566666666666543
No 101
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.95 E-value=1.8e-06 Score=79.75 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=45.5
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|+.|.++++.+.... ....+++|+.|+|++..+.+- . -+..+++|+.|++++|.+
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQL 97 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCC
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCcc
Confidence 78999999999877643 367789999999998877642 1 356899999999998754
No 102
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.94 E-value=3e-06 Score=78.28 Aligned_cols=105 Identities=24% Similarity=0.325 Sum_probs=64.3
Q ss_pred ccceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEe-cCCcc
Q 046555 125 RQKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVEL-TSPTL 202 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i-~~~~L 202 (418)
.++|++|++++|.+....+ ....+++|+.|+|++..+++... ..+..+++|+.|++.++.+..-... .+ ..++|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L 126 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASLENF---PIGHLKTL 126 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTSCCCCSTTC---CCTTCTTC
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccEEECCCCCccccCch---hcccCCCC
Confidence 3788889998887665332 35677888888888776543211 1245788899998887655321111 11 23567
Q ss_pred cEEEEEeeccceE-----EEeCCCccEEEeecccee
Q 046555 203 KSIYVEAISLDKF-----ILEADSIERLHLKDCALE 233 (418)
Q Consensus 203 ~~L~l~~~~~~~~-----~~~~P~L~~L~l~~~~~~ 233 (418)
+.|++++..+..+ .-..++|++|++++|.+.
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 7777664433221 122578888888877654
No 103
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.93 E-value=1.3e-06 Score=84.90 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=44.9
Q ss_pred HHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccc-e---ecccccCCCCcceEEEEecCCccc
Q 046555 280 FYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDG-V---LHYGLQGSANLENVAVLELGWPVI 355 (418)
Q Consensus 280 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~-~---l~~~l~~~~~Le~l~vl~l~~~~~ 355 (418)
+...+...++|+.|+|.+..+.+.....+.......++|++|+++++...+ . +...+..++ .|+.|+++++.+
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~---~L~~L~Ls~N~i 251 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP---SLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCS---SCCEEECTTSSC
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCC---CCCEEeccCCCC
Confidence 344567788999999876543321111122233455789999999874321 1 112233334 456678888888
Q ss_pred ccch
Q 046555 356 SDLF 359 (418)
Q Consensus 356 ~d~~ 359 (418)
++..
T Consensus 252 ~~~g 255 (372)
T 3un9_A 252 SSEG 255 (372)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8754
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.89 E-value=1e-06 Score=73.40 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=35.3
Q ss_pred cceeEEEEeceEec--CCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTIT--GVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~--~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|+.|++++|.+. ..++....+++|+.|+|+++.+++. ..+..+|+|+.|++++|.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcc
Confidence 56777777777666 2333345667777777766655432 3345566677777766543
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.85 E-value=1.5e-05 Score=69.81 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=35.8
Q ss_pred cceeEEEEeceEecC-CCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCc
Q 046555 126 QKLEVLALAHNTITG-VEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPE 185 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~-~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~ 185 (418)
++|++|++++|.+.+ .......+++|+.|+|+++.+++..... +..+|+|+.|++++|.
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNG 147 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCT
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCC
Confidence 667777777766654 2223455677777777766666543332 4566777777776654
No 106
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.85 E-value=2.3e-06 Score=78.02 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=39.4
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++++.|+|++|.+.+..+ ....+++|+.|+|++..+++.. ...+..+++|+.|++++|.+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcc
Confidence 578888888887766433 3556788888888776654311 12245677888888877654
No 107
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.81 E-value=1.4e-05 Score=72.10 Aligned_cols=168 Identities=9% Similarity=0.062 Sum_probs=84.6
Q ss_pred ccceeEEEEeceE-ecCCCC-CCccccccceeEEee-EEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCc
Q 046555 125 RQKLEVLALAHNT-ITGVEP-NFQRFPCLKSLSLSY-VSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPT 201 (418)
Q Consensus 125 ~~~L~~L~L~~~~-l~~~~~-~~~~~p~L~~L~L~~-v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~ 201 (418)
+++|++|++++|. +....+ ....+++|++|+|++ ..++.-. ...+.++|+|+.|++.+|.+..-.++ -..++
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~lp~~----~~l~~ 128 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKMFPDL----TKVYS 128 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCSCCCC----TTCCB
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCcccccc----ccccc
Confidence 3778888888875 655333 346778888888876 3332110 01234678888888877654221110 01133
Q ss_pred cc---EEEEEee-ccceEEE----eCCCcc-EEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeec
Q 046555 202 LK---SIYVEAI-SLDKFIL----EADSIE-RLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSS 272 (418)
Q Consensus 202 L~---~L~l~~~-~~~~~~~----~~P~L~-~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~ 272 (418)
|+ .|.+++. .+..+.- ..++|+ .|+++++.+..+.. ..... ++|+.+++++
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-------------------~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-------------------YAFNG-TKLDAVYLNK 188 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT-------------------TTTTT-CEEEEEECTT
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH-------------------hhcCC-CCCCEEEcCC
Confidence 33 5555543 3333221 245666 77776665432210 11111 4555665554
Q ss_pred cc-cchHHHHHhhhcC-CCccEEEEcccccCccccccHhHHhhcCCCCceeeeee
Q 046555 273 FT-IFWPKFYQMISRS-SKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSY 325 (418)
Q Consensus 273 ~~-~~~~~~~~~l~~~-~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~ 325 (418)
.. ... .....+..+ ++|+.|++.+..+.. .. ...|++|++|.++.
T Consensus 189 n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~---l~----~~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 189 NKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTA---LP----SKGLEHLKELIARN 235 (239)
T ss_dssp CTTCCE-ECTTTTTTCSBCCSEEECTTCCCCC---CC----CTTCTTCSEEECTT
T ss_pred CCCccc-CCHHHhhccccCCcEEECCCCcccc---CC----hhHhccCceeeccC
Confidence 42 110 001223445 677877775533221 11 12578888887764
No 108
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.75 E-value=6.6e-06 Score=76.33 Aligned_cols=35 Identities=26% Similarity=0.598 Sum_probs=32.1
Q ss_pred CCCCcHHHHHHHHccCCccceee-ecccccchHHHHH
Q 046555 1 MEQLPVEVIGNILSRLGGARDVV-IASATCKKWQEAY 36 (418)
Q Consensus 1 is~LPdelL~~Ils~L~a~rt~v-ls~~vcrrWr~lw 36 (418)
++.||||+|.+||++|| +++.+ .+++|||+||.+-
T Consensus 51 ~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 51 LAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELV 86 (297)
T ss_dssp TTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHH
T ss_pred hhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHh
Confidence 46899999999999999 58898 9999999999984
No 109
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.75 E-value=3.3e-06 Score=78.96 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=34.2
Q ss_pred cceeEEEEeceEecCCC-CCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVE-PNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~-~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++++.|+|++|.+.... .....+++|+.|+|++..++.-.. ...+|+|+.|+++++.+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l 89 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQL 89 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcC
Confidence 56777777777665422 234566777777776655442111 14667777777776554
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.73 E-value=5e-06 Score=73.35 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=38.9
Q ss_pred cceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|+++++.+.+..+. ...+++|++|+|++..+++- ....+..+++|+.|++.+|.+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcC
Confidence 5788888888877664332 45678888888877655421 112245678888888877544
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.71 E-value=5.8e-06 Score=75.33 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=43.5
Q ss_pred ccceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 125 RQKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
.++|++|+|++|.+.+..+. ...+++|+.|+|++..++... ...+..+++|+.|++++|.+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l 119 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGNQL 119 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCCcC
Confidence 37899999998888774433 467888999998877665311 12346788899999988654
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.70 E-value=1.1e-05 Score=82.52 Aligned_cols=91 Identities=21% Similarity=0.267 Sum_probs=44.2
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccEE
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKSI 205 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~L 205 (418)
++|++|+|++|.+++.+. . ..+|+.|+|++..+++ +.. .+++|+.|++++|.+.. ... ..++|+.|
T Consensus 100 ~~L~~L~Ls~N~l~~ip~-l--~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~---lp~---~l~~L~~L 165 (571)
T 3cvr_A 100 ASLEYLDACDNRLSTLPE-L--PASLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM---LPE---LPTSLEVL 165 (571)
T ss_dssp TTCCEEECCSSCCSCCCC-C--CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC---CCC---CCTTCCEE
T ss_pred CCCCEEEccCCCCCCcch-h--hcCCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc---CCC---cCCCcCEE
Confidence 566666666665554322 1 1156666666554432 111 45666666666654421 111 23456666
Q ss_pred EEEeec---cceEEEeCCCccEEEeecccee
Q 046555 206 YVEAIS---LDKFILEADSIERLHLKDCALE 233 (418)
Q Consensus 206 ~l~~~~---~~~~~~~~P~L~~L~l~~~~~~ 233 (418)
.+++.. +.. +. ++|+.|++++|.+.
T Consensus 166 ~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 166 SVRNNQLTFLPE--LP-ESLEALDVSTNLLE 193 (571)
T ss_dssp ECCSSCCSCCCC--CC-TTCCEEECCSSCCS
T ss_pred ECCCCCCCCcch--hh-CCCCEEECcCCCCC
Confidence 655332 222 11 56666666665543
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.66 E-value=8.1e-05 Score=76.52 Aligned_cols=126 Identities=20% Similarity=0.226 Sum_probs=80.3
Q ss_pred CCceEEEEe----ecCCCCccccccccccceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCccc
Q 046555 102 ETLRRLYYN----VRTTPNVNILEICGRQKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKI 176 (418)
Q Consensus 102 ~~l~~L~l~----~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~L 176 (418)
..+++|++. ...++. .|. +.++|++|+|++|.+....+ ...++++|++|+|++..++.-. ...+.++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~--~f~--~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY--SFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECTT--TTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCHH--HHh--CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCC
Confidence 467888883 122222 222 34789999999998776444 3567899999999887654211 1235678999
Q ss_pred ceeeecCCcccccccceeEEe-cCCcccEEEEEeeccceEE-----EeCCCccEEEeeccceeeE
Q 046555 177 EILELVSPEIAMLDAQVTVEL-TSPTLKSIYVEAISLDKFI-----LEADSIERLHLKDCALELF 235 (418)
Q Consensus 177 e~L~l~~~~~~~~~~~~~~~i-~~~~L~~L~l~~~~~~~~~-----~~~P~L~~L~l~~~~~~~~ 235 (418)
+.|++.+|.+..-... .+ ..++|+.|+++...+..+. ...++|++|++++|.+..+
T Consensus 127 ~~L~Ls~N~l~~l~~~---~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 127 QKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp CEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CEEECCCCcCCCCChh---hhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 9999998765432211 12 2367888888754333222 2368899999988876543
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.66 E-value=6e-06 Score=70.20 Aligned_cols=61 Identities=28% Similarity=0.338 Sum_probs=50.2
Q ss_pred ccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCccc
Q 046555 125 RQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIA 187 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~ 187 (418)
.++|++|++++|.+.+. +....+++|+.|+|++..+.+. +..++..+|+|+.|++++|.+.
T Consensus 48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~ 108 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLK 108 (168)
T ss_dssp GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCC
T ss_pred CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccC
Confidence 48999999999988776 5567889999999999887653 4556677999999999997663
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.53 E-value=4.3e-05 Score=78.62 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=53.4
Q ss_pred CCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCC
Q 046555 260 DTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGS 339 (418)
Q Consensus 260 ~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~ 339 (418)
...++|+.+++++...........+...++|+.|+|.+..+... . +.....+++|++|.++++...+.....+.++
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l---~-~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL---S-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE---C-TTTTTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc---C-hHHHcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence 34567777777655432111112344566777777765433211 0 1113345677777777653322222223333
Q ss_pred CCcceEEEEecCCcccccchHHHHHHHHhcC-cccceEEEe
Q 046555 340 ANLENVAVLELGWPVISDLFSHWVEGLLKRC-PNLRRLVIF 379 (418)
Q Consensus 340 ~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c-~~Lk~L~i~ 379 (418)
..|++|++..+.+...... .+... ++|+.|.|.
T Consensus 542 ---~~L~~L~Ls~N~l~~~~~~----~l~~l~~~L~~L~L~ 575 (635)
T 4g8a_A 542 ---NSLQVLDYSLNHIMTSKKQ----ELQHFPSSLAFLNLT 575 (635)
T ss_dssp ---TTCCEEECTTSCCCBCCSS----CTTCCCTTCCEEECT
T ss_pred ---CCCCEEECCCCcCCCCCHH----HHHhhhCcCCEEEee
Confidence 3455566766555443211 12234 567777775
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.36 E-value=2.3e-05 Score=65.12 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=49.2
Q ss_pred ccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 125 RQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
.++|++|++++|.+.+. +....+++|+.|+|++..+++. +...+..+|+|+.|++++|.+
T Consensus 41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i 100 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKI 100 (149)
T ss_dssp CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCC
T ss_pred cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcC
Confidence 48999999999988776 5567889999999998887653 555677899999999998765
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.23 E-value=3.7e-05 Score=68.56 Aligned_cols=60 Identities=25% Similarity=0.373 Sum_probs=29.5
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|+.|+|++|.+....+ ....+++|+.|+|++..++... ...+.++++|+.|+|++|.+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcC
Confidence 456666666665544222 3345566666666554433210 01134456666666665543
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.23 E-value=4.3e-05 Score=68.57 Aligned_cols=127 Identities=21% Similarity=0.257 Sum_probs=65.1
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
++|++|+|++|.+.+..+ ....+++|+.|+|++..++.-. ...+..+++|+.|+|++|.+..-... .--..++|+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~--~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSA--VFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccChh--HhCcchhhCe
Confidence 567777777776666432 3456677777777766553211 11235677777777777654221110 0001244555
Q ss_pred EEEEeeccceE---EEeCCCccEEEeeccceeeEEEecCCceeEEEecceeEEeeccCCCcCCceeEEeeccc
Q 046555 205 IYVEAISLDKF---ILEADSIERLHLKDCALELFELVGRGTLKHFKIDDVSVIHLDIGDTVDNLEIVDVSSFT 274 (418)
Q Consensus 205 L~l~~~~~~~~---~~~~P~L~~L~l~~~~~~~~~~~~~~~L~~l~l~~~~~~~l~i~~~~~~L~~l~l~~~~ 274 (418)
|.+++..+..+ ....++|+.|++++|.+..+. ......+++|+.+++++..
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~-------------------~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP-------------------HGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC-------------------TTTTTTCTTCCEEECTTSC
T ss_pred EeccCCcccccCcccccCCCCCEEECCCCcCCccC-------------------HHHHhCCCCCCEEEeeCCC
Confidence 55543322211 112467777777766543111 0112356778888877654
No 119
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.21 E-value=3.2e-05 Score=71.04 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=30.6
Q ss_pred CCCCcHHHHHHHHccCCccceeeecccccchHHHH
Q 046555 1 MEQLPVEVIGNILSRLGGARDVVIASATCKKWQEA 35 (418)
Q Consensus 1 is~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~l 35 (418)
|+.||+||+.+|||||+ +++.+...+|||+||.+
T Consensus 5 l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence 35799999999999999 57888889999999996
No 120
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.19 E-value=0.0003 Score=67.71 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=62.5
Q ss_pred eeeEEEEecCCC-CCChHHHHHHHHHh-h-CCceEEEEeecCCC----------Cc-cccccccccceeEEEEeceE-ec
Q 046555 75 LQGLSILMDDVD-EFSASTVIAWLMYT-R-ETLRRLYYNVRTTP----------NV-NILEICGRQKLEVLALAHNT-IT 139 (418)
Q Consensus 75 l~~l~l~~~~~~-~~~~~~v~~wl~~~-~-~~l~~L~l~~~~~~----------~~-~~~~~~~~~~L~~L~L~~~~-l~ 139 (418)
++.+.+..-.++ +.....+..+.... . +++++|.+...... .. .++. .+|+|+.|+|++|. +.
T Consensus 109 v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~--~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 109 LKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp CSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH--TCTTCCEEEEECCBTCB
T ss_pred cceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh--cCCCCcEEEEeCCCCce
Confidence 667766532222 11112334443322 2 78888888411110 00 1112 24899999998872 22
Q ss_pred CCCCCCccccccceeEEeeEEecHHHHHHHHH-cCcccceeeecC
Q 046555 140 GVEPNFQRFPCLKSLSLSYVSISALDLSLLLT-ACQKIEILELVS 183 (418)
Q Consensus 140 ~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~-~cp~Le~L~l~~ 183 (418)
..+ ...++|++|+|..+.+++..+..+.. .+|+|+.|+|..
T Consensus 187 -l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 187 -IGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp -CCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred -ecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 222 34789999999888888888877764 799999999863
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.12 E-value=3e-05 Score=67.82 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=28.0
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCC
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSP 184 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~ 184 (418)
++|+.|++++|.+...+.....+++|+.|+|++..+++ +.. +..+|+|+.|++++|
T Consensus 70 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~l~~N 125 (198)
T 1ds9_A 70 ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSG-IEKLVNLRVLYMSNN 125 (198)
T ss_dssp TTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HHH-HHHHHHSSEEEESEE
T ss_pred CCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CCc-cccCCCCCEEECCCC
Confidence 55555666555555433222334555556555555543 111 344555555555553
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.11 E-value=4e-05 Score=65.67 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=24.5
Q ss_pred ceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCC
Q 046555 127 KLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSP 184 (418)
Q Consensus 127 ~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~ 184 (418)
+|++|++++|.+.+. +....+++|+.|+|++..+++-. ..++..+|+|+.|++++|
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNN 98 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC-cchhhcCCCCCEEECCCC
Confidence 555555555544432 22344455555555544333110 012234555555555544
No 123
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.11 E-value=0.0007 Score=58.49 Aligned_cols=117 Identities=15% Similarity=0.184 Sum_probs=77.3
Q ss_pred CcCCceeEEeecc-ccchH---HHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecc-c-ce--e
Q 046555 261 TVDNLEIVDVSSF-TIFWP---KFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLK-D-GV--L 332 (418)
Q Consensus 261 ~~~~L~~l~l~~~-~~~~~---~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~-~-~~--l 332 (418)
..++|++|+++++ ..... .+...+...++|+.|+|.+..+.+.....+.......+.|++|+++++.. + |. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 5688999999887 44322 23455667889999998876554332222333344567899999998742 2 22 1
Q ss_pred cccccCCCCcceEEEEec--CCcccccchHHHHHHHHhcCcccceEEEee
Q 046555 333 HYGLQGSANLENVAVLEL--GWPVISDLFSHWVEGLLKRCPNLRRLVIFG 380 (418)
Q Consensus 333 ~~~l~~~~~Le~l~vl~l--~~~~~~d~~~~~l~~ll~~c~~Lk~L~i~~ 380 (418)
...+...+ .|+.|++ .++.+++.....+...++.++.|+.|.+.+
T Consensus 114 ~~~L~~n~---~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 114 VEALQSNT---SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHGGGGCS---SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHhCC---CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 12344444 4566778 778888865556777788899999999964
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.09 E-value=0.00012 Score=64.28 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=38.3
Q ss_pred cceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|++++|.+....+. ...+++|++|+|++..++... ...+..+++|+.|++++|.+
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l 112 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQLKELALNTNQL 112 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCCCEEEcCCCcC
Confidence 6788888887777664332 356777888888766554211 11245677888888877654
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.08 E-value=1.1e-05 Score=70.58 Aligned_cols=59 Identities=24% Similarity=0.245 Sum_probs=43.0
Q ss_pred ccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 125 RQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
.++|++|+|++|.+.+.+ ....+++|+.|+|++..++. +..++..+|+|+.|++++|.+
T Consensus 47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l 105 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI 105 (198)
T ss_dssp TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEEC
T ss_pred CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcC
Confidence 378888888888887743 56677888888888887762 334455678888888887543
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.01 E-value=0.00026 Score=63.41 Aligned_cols=103 Identities=16% Similarity=0.160 Sum_probs=57.2
Q ss_pred cceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 126 QKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
++|++|+|++|.+....+. ...+++|+.|+|++..++.- ....+..+++|+.|++.+|.+..-... + -..++|+.
T Consensus 64 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~-~~l~~L~~ 139 (229)
T 3e6j_A 64 INLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLTELPRG--I-ERLTHLTH 139 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCSCCTT--G-GGCTTCSE
T ss_pred cCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCcccccCcc--c-ccCCCCCE
Confidence 6677777777766554332 35667777777766555421 011234567777777776654311100 0 12356666
Q ss_pred EEEEeeccceEE----EeCCCccEEEeeccce
Q 046555 205 IYVEAISLDKFI----LEADSIERLHLKDCAL 232 (418)
Q Consensus 205 L~l~~~~~~~~~----~~~P~L~~L~l~~~~~ 232 (418)
|++++..+..+. -..++|+.|+++++.+
T Consensus 140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 666643333221 1257899999988754
No 127
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.01 E-value=0.00012 Score=65.12 Aligned_cols=60 Identities=28% Similarity=0.356 Sum_probs=39.8
Q ss_pred cceeEEEEeceEecCC-CCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGV-EPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~-~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|+|++|.+... .....++++|+.|+|++..++.- -..++.++++|+.|+|++|.+
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l 116 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKI 116 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCCC
Confidence 6788888888876653 23456778888888877655421 012245678888888887654
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=96.97 E-value=3.7e-05 Score=65.86 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=24.3
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPE 185 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~ 185 (418)
++|++|++++|.+.........+|+|+.|+|++..+++- .-+..+|+|+.|++++|.
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc
Confidence 445555555554443322112223555555554443321 123345555555555543
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.95 E-value=0.00062 Score=65.02 Aligned_cols=186 Identities=18% Similarity=0.170 Sum_probs=94.4
Q ss_pred ccceeEEEEeceEecC-CCC-CCccccccceeEEeeE----EecHHHHHHHHHcCcccceeeecCCcccccccceeEEec
Q 046555 125 RQKLEVLALAHNTITG-VEP-NFQRFPCLKSLSLSYV----SISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELT 198 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~-~~~-~~~~~p~L~~L~L~~v----~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~ 198 (418)
.++|++|+|++|.+.. ..+ .+.++++|+++...+. .+... .+..+|+|+.|++.+|.+....... ...
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~----~f~~l~~L~~L~l~~n~l~~~~~~~--~~~ 126 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE----AFQNLPNLQYLLISNTGIKHLPDVH--KIH 126 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT----SBCCCTTCCEEEEEEECCSSCCCCT--TCC
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch----hhhhccccccccccccccccCCchh--hcc
Confidence 3788999998886544 221 2345666665444332 22222 2456888999998876553221110 112
Q ss_pred CCcccEEEEEee-ccceEEEe-----CCCccEEEeeccceeeEEE--ecCCceeEEEecce-eEEee--ccCCCcCCcee
Q 046555 199 SPTLKSIYVEAI-SLDKFILE-----ADSIERLHLKDCALELFEL--VGRGTLKHFKIDDV-SVIHL--DIGDTVDNLEI 267 (418)
Q Consensus 199 ~~~L~~L~l~~~-~~~~~~~~-----~P~L~~L~l~~~~~~~~~~--~~~~~L~~l~l~~~-~~~~l--~i~~~~~~L~~ 267 (418)
...+..+.+.+. .+..+... ...++.|+++++.+..+.. ....+++.+.+.+. .+..+ +....+++|+.
T Consensus 127 ~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~ 206 (350)
T 4ay9_X 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206 (350)
T ss_dssp BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSE
T ss_pred cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccch
Confidence 334455555432 22222211 2467888888887654321 12234555555432 12222 23346778888
Q ss_pred EEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeee
Q 046555 268 VDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSY 325 (418)
Q Consensus 268 l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~ 325 (418)
|++++..... + -...+.+|++|.+.+.... ..+.. ...|++|+.+.+.|
T Consensus 207 LdLs~N~l~~--l--p~~~~~~L~~L~~l~~~~l----~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 207 LDISRTRIHS--L--PSYGLENLKKLRARSTYNL----KKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp EECTTSCCCC--C--CSSSCTTCCEEECTTCTTC----CCCCC-TTTCCSCCEEECSC
T ss_pred hhcCCCCcCc--c--ChhhhccchHhhhccCCCc----CcCCC-chhCcChhhCcCCC
Confidence 8887654321 0 0122457777765543211 01111 23567777777765
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.93 E-value=2.6e-06 Score=87.39 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=58.0
Q ss_pred CccEEEeeccceeeEEEe-cCCceeEEEecceeEEeec-cCCCcCCceeEEeeccccchHHHHHhhhcCCCccEEEEccc
Q 046555 221 SIERLHLKDCALELFELV-GRGTLKHFKIDDVSVIHLD-IGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDV 298 (418)
Q Consensus 221 ~L~~L~l~~~~~~~~~~~-~~~~L~~l~l~~~~~~~l~-i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 298 (418)
.|+.|++++|.+..++.+ +.++|+.+.+....+..+. ....+++|+.|++++..... + ..+..+++|+.|++.+.
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--l-p~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--V-DGVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--C-GGGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--C-cccCCCCCCcEEECCCC
Confidence 466666666655433222 2245556655554433221 12257888888888765442 1 25667788988887654
Q ss_pred ccCccccccHhHHhhcCCCCceeeeeeecc
Q 046555 299 VFDEDEVLDLETIGVCFPQLSHLSLSYDLK 328 (418)
Q Consensus 299 ~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~ 328 (418)
.+... ........+++|+.|+++.+..
T Consensus 519 ~l~~~---~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 519 RLQQS---AAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CCCSS---STTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCC---CCcHHHhcCCCCCEEEecCCcC
Confidence 43311 1011234678899999887643
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.91 E-value=0.00016 Score=69.48 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=51.6
Q ss_pred cceeEEEEeceEecCCCCC-Cc-cccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEe-cCCcc
Q 046555 126 QKLEVLALAHNTITGVEPN-FQ-RFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVEL-TSPTL 202 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~-~~-~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i-~~~~L 202 (418)
+.++.|+|++|.+++..+. .. .+++|+.|+|++..++.-.- ..+..+++|+.|+|++|.+..-... .+ ..++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHLHTLDEF---LFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTC
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcCCcCCHH---HhCCCcCC
Confidence 4566677776666553222 22 56667777776654432110 1134566777777766544211100 00 12445
Q ss_pred cEEEEEeeccceEE----EeCCCccEEEeecccee
Q 046555 203 KSIYVEAISLDKFI----LEADSIERLHLKDCALE 233 (418)
Q Consensus 203 ~~L~l~~~~~~~~~----~~~P~L~~L~l~~~~~~ 233 (418)
+.|.+++..+..+. -..++|+.|++++|.+.
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 55555433332221 12467777887777654
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.90 E-value=0.00053 Score=65.49 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=22.9
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEE
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVS 160 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~ 160 (418)
+++++|+|++|.++...+ .+.++++|++|+|++..
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence 567777777776655333 24667777777777654
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.86 E-value=0.00019 Score=63.84 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=33.5
Q ss_pred cceeEEEEeceEecCCCC--CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEP--NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~--~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
+.+++|+|++|.+....+ ....+++|+.|+|++..+++-. ...+.++++|+.|+|++|.+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCcc
Confidence 456677777776655322 2356677777777665443210 01234567777777776544
No 134
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=96.78 E-value=0.00018 Score=64.05 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=42.9
Q ss_pred ccceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 125 RQKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
.++|++|+|++|.+.+..+ ....+++|++|+|++..++... ...+.++++|+.|++++|.+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCEEECTTSCC
T ss_pred CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCEEECCCCcC
Confidence 3788889998887766433 4567888888888877654311 12245788899999988765
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.76 E-value=0.0031 Score=59.49 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=54.0
Q ss_pred cCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCc-eeeeeeecccceecccccCCC
Q 046555 262 VDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLS-HLSLSYDLKDGVLHYGLQGSA 340 (418)
Q Consensus 262 ~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~-~L~l~~~~~~~~l~~~l~~~~ 340 (418)
+++|+.+++.+..... .....+..+.+|+.+.+.+- .. .+. +..+..+++|+ .+.+.... ...-.....+|+
T Consensus 225 ~~~L~~l~L~~n~i~~-I~~~aF~~~~~L~~l~l~~n-i~---~I~-~~aF~~~~~L~~~l~l~~~l-~~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-IPDFTFAQKKYLLKIKLPHN-LK---TIG-QRVFSNCGRLAGTLELPASV-TAIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCE-ECTTTTTTCTTCCEEECCTT-CC---EEC-TTTTTTCTTCCEEEEECTTC-CEECTTTTTTCT
T ss_pred cCCCeEEECCCCCcce-ecHhhhhCCCCCCEEECCcc-cc---eeh-HHHhhCChhccEEEEEcccc-eEEchhhhhCCc
Confidence 6788988887632110 01123566889999987542 11 011 11244567788 88776521 111124556777
Q ss_pred CcceEEEEecCCcccccchHHHHHHHHhcCcccceEE
Q 046555 341 NLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRLV 377 (418)
Q Consensus 341 ~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L~ 377 (418)
+|+.+..-.-....+++. ...+|++||.+.
T Consensus 298 ~L~~l~l~~n~i~~I~~~-------aF~~~~~L~~ly 327 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGDE-------LFGNGVPSKLIY 327 (329)
T ss_dssp TEEEEEECSSCCCEECTT-------TTCTTCCCCEEE
T ss_pred cCCEEEeCCCccCccchh-------hhcCCcchhhhc
Confidence 666654211112233331 134799999875
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.75 E-value=0.00025 Score=61.72 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=26.0
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPE 185 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~ 185 (418)
++|++|+|++|.+.........+++|+.|+|++..++.-. ...+.++++|+.|+|++|.
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc
Confidence 3455555555544433333344455555555544333210 0112344555555555543
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.73 E-value=0.00026 Score=61.46 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=32.7
Q ss_pred cceeEEEEeceEecCCCCC--CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEPN--FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~--~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|++++|.+....+. ...+++|+.|+|++..+++.. ...+.+.++|+.|+|++|.+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcC
Confidence 3666666666666553321 455666666666665544210 11234566666666666543
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.71 E-value=0.00022 Score=60.90 Aligned_cols=60 Identities=25% Similarity=0.328 Sum_probs=31.8
Q ss_pred cceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|++++|.+....+. ...+++|+.|+|++..++.-. ...+..+++|+.|++++|.+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCc
Confidence 4666666666665543322 245566666666655443210 11234566666666666543
No 139
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.69 E-value=0.00019 Score=70.65 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHccCCccceeeecccccchHHHHHc
Q 046555 2 EQLPVEVIGNILSRLGGARDVVIASATCKKWQEAYR 37 (418)
Q Consensus 2 s~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~lw~ 37 (418)
+.||+|++.+||++|| +++.+.+++|||+|+++..
T Consensus 16 ~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp HHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHT
T ss_pred HHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHc
Confidence 4699999999999999 5788899999999998754
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.53 E-value=0.00096 Score=57.85 Aligned_cols=103 Identities=10% Similarity=0.122 Sum_probs=58.6
Q ss_pred ccccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEe-cCCc
Q 046555 123 CGRQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVEL-TSPT 201 (418)
Q Consensus 123 ~~~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i-~~~~ 201 (418)
|.|. -+.++++++.+..++. .-++.|++|.|++..++...-..++...++|+.|++++|.+...... .+ ..++
T Consensus 6 C~C~-~~~l~~s~~~l~~ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~ 79 (192)
T 1w8a_A 6 CHCE-GTTVDCTGRGLKEIPR--DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN---AFEGASH 79 (192)
T ss_dssp SEEE-TTEEECTTSCCSSCCS--CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT---TTTTCTT
T ss_pred CEEC-CCEEEcCCCCcCcCcc--CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh---HcCCccc
Confidence 4443 3778898887765432 23458999999988765422222356899999999999765321110 01 1245
Q ss_pred ccEEEEEeeccceEEE----eCCCccEEEeeccc
Q 046555 202 LKSIYVEAISLDKFIL----EADSIERLHLKDCA 231 (418)
Q Consensus 202 L~~L~l~~~~~~~~~~----~~P~L~~L~l~~~~ 231 (418)
|+.|.++...+..+.- ..++|++|+++++.
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 5555555433332221 13555555555554
No 141
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=96.41 E-value=0.0058 Score=58.46 Aligned_cols=111 Identities=21% Similarity=0.124 Sum_probs=54.2
Q ss_pred CcCCceeEEeeccccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCC
Q 046555 261 TVDNLEIVDVSSFTIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSA 340 (418)
Q Consensus 261 ~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~ 340 (418)
.+++|++|++++..... .....+...++|+.|+|.+..+... .. .....+++|++|.++++...+.-...+.+..
T Consensus 86 ~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~---~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~ 160 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVV---DR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160 (361)
T ss_dssp TCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEE---CT-TTTTTCTTCCEEECCSSCCCSCCGGGTC---
T ss_pred CCCCCCEEECCCCcCCc-CCHHHhCCCcCCCEEECCCCcccEE---CH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcc
Confidence 45677777776644321 0011244567777777655433211 11 1233467788888877533221112222223
Q ss_pred CcceEEEEecCCcccccchHHHHHHHHhcCcc--cceEEEee
Q 046555 341 NLENVAVLELGWPVISDLFSHWVEGLLKRCPN--LRRLVIFG 380 (418)
Q Consensus 341 ~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~--Lk~L~i~~ 380 (418)
.+.+|+.|++..+.+....... +...+. |+.|.+.+
T Consensus 161 ~l~~L~~L~L~~N~l~~l~~~~----~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 161 KLPKLMLLDLSSNKLKKLPLTD----LQKLPAWVKNGLYLHN 198 (361)
T ss_dssp -CTTCCEEECCSSCCCCCCHHH----HHHSCHHHHTTEECCS
T ss_pred cCCcCCEEECCCCCCCccCHHH----hhhccHhhcceEEecC
Confidence 3455666777766666543222 223454 46777753
No 142
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.35 E-value=0.00093 Score=65.45 Aligned_cols=34 Identities=32% Similarity=0.571 Sum_probs=31.0
Q ss_pred CCCCcHHHHHHHHccCCccceeeecccccchHHHH
Q 046555 1 MEQLPVEVIGNILSRLGGARDVVIASATCKKWQEA 35 (418)
Q Consensus 1 is~LPdelL~~Ils~L~a~rt~vls~~vcrrWr~l 35 (418)
++.||+|++.+||++|+ +++.+.+++|||+|+.+
T Consensus 19 ~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp TTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHH
T ss_pred hHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhh
Confidence 57899999999999999 57888899999999985
No 143
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.15 E-value=0.00052 Score=67.16 Aligned_cols=33 Identities=36% Similarity=0.672 Sum_probs=29.9
Q ss_pred CCCcHH----HHHHHHccCCccceeeecccccchHHHH
Q 046555 2 EQLPVE----VIGNILSRLGGARDVVIASATCKKWQEA 35 (418)
Q Consensus 2 s~LPde----lL~~Ils~L~a~rt~vls~~vcrrWr~l 35 (418)
+.||+| |+.+||++|+ +++.+.+++|||+|+.+
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRV 48 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHH
T ss_pred HHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence 569999 9999999999 57888899999999975
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.11 E-value=0.00082 Score=68.69 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=40.5
Q ss_pred cceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
..|+.|+|++|.+++.+. ...+++|+.|+|++..++ .+..-+..+++|+.|+|++|.+
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNAL 498 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCC
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCC
Confidence 457788888887776543 667788888888776655 2222356788888888887655
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.89 E-value=0.0098 Score=55.98 Aligned_cols=98 Identities=9% Similarity=-0.058 Sum_probs=49.5
Q ss_pred CceeEEEecceeEEee--ccCCCcCCceeEEeeccccchHHHHHhhhcCCCcc-EEEEcccccCccccccHhHHhhcCCC
Q 046555 241 GTLKHFKIDDVSVIHL--DIGDTVDNLEIVDVSSFTIFWPKFYQMISRSSKLK-KLRLWDVVFDEDEVLDLETIGVCFPQ 317 (418)
Q Consensus 241 ~~L~~l~l~~~~~~~l--~i~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~~~~~l~~~fp~ 317 (418)
++|+.+.+.+..+..+ .....+.+|+.+.+.+.-.. .....+..+++|+ .+.+.+ ... .+. +..+..+++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~--I~~~aF~~~~~L~~~l~l~~-~l~---~I~-~~aF~~c~~ 298 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKT--IGQRVFSNCGRLAGTLELPA-SVT---AIE-FGAFMGCDN 298 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCE--ECTTTTTTCTTCCEEEEECT-TCC---EEC-TTTTTTCTT
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccce--ehHHHhhCChhccEEEEEcc-cce---EEc-hhhhhCCcc
Confidence 4455555544332222 12345677888777653110 0112345677888 888754 211 011 112446678
Q ss_pred CceeeeeeecccceecccccCCCCcceE
Q 046555 318 LSHLSLSYDLKDGVLHYGLQGSANLENV 345 (418)
Q Consensus 318 L~~L~l~~~~~~~~l~~~l~~~~~Le~l 345 (418)
|+++.++.......-.....+|++|+.+
T Consensus 299 L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred CCEEEeCCCccCccchhhhcCCcchhhh
Confidence 8888875432222222455677777664
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.79 E-value=0.0011 Score=70.00 Aligned_cols=104 Identities=19% Similarity=0.235 Sum_probs=68.6
Q ss_pred ccceeEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCcccE
Q 046555 125 RQKLEVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPTLKS 204 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~L~~ 204 (418)
.+.|+.|+|++|.+....+....+++|+.|+|++..++ .+..-+..+++|+.|+|++|.+..-.. .+ -..++|+.
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~--~~-~~l~~L~~ 297 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPA--EL-GSCFQLKY 297 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCS--SG-GGGTTCSE
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccCh--hh-cCCCCCCE
Confidence 37888999998877765545567888999998887665 222224678899999998876641110 00 12367888
Q ss_pred EEEEeeccceE---EEeCCCccEEEeecccee
Q 046555 205 IYVEAISLDKF---ILEADSIERLHLKDCALE 233 (418)
Q Consensus 205 L~l~~~~~~~~---~~~~P~L~~L~l~~~~~~ 233 (418)
|.++...+..+ .-..++|+.|++++|.+.
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 88875433322 223688999999888654
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.40 E-value=0.0099 Score=51.08 Aligned_cols=97 Identities=12% Similarity=0.025 Sum_probs=64.1
Q ss_pred HHHHhhhcCCCccEEEEccc-ccCccccccHhHHhhcCCCCceeeeeeecc-c-cee--cccccCCCCcceEEEEecCCc
Q 046555 279 KFYQMISRSSKLKKLRLWDV-VFDEDEVLDLETIGVCFPQLSHLSLSYDLK-D-GVL--HYGLQGSANLENVAVLELGWP 353 (418)
Q Consensus 279 ~~~~~l~~~~~L~~L~L~~~-~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~-~-~~l--~~~l~~~~~Le~l~vl~l~~~ 353 (418)
.+...+...++|+.|+|.+. .+.+.....+.......++|++|+|+++.. + |.. ...+...+ .++.|++.++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~---~L~~L~L~~N 103 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN---TLKSLNVESN 103 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS---SCCEEECCSS
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC---CcCEEECcCC
Confidence 45567788999999999876 554322222333334567899999998742 2 221 12233333 4556789989
Q ss_pred ccccchHHHHHHHHhcCcccceEEE
Q 046555 354 VISDLFSHWVEGLLKRCPNLRRLVI 378 (418)
Q Consensus 354 ~~~d~~~~~l~~ll~~c~~Lk~L~i 378 (418)
.+++.....+...++.++.|+.|.|
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEe
Confidence 8988654556666788899999999
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=95.38 E-value=0.0044 Score=53.73 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=39.0
Q ss_pred eEEEEeceEecCCCCCCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 129 EVLALAHNTITGVEPNFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 129 ~~L~L~~~~l~~~~~~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
+.++++++.+..++. .-++.|+.|+|++..++. +...+..+++|+.|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~--~~~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK--GIPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRI 66 (193)
T ss_dssp TEEECTTSCCSSCCS--CCCTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCC--CCCCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcC
Confidence 567888877765432 234789999998876652 213467899999999998765
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.27 E-value=0.003 Score=53.55 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=40.0
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|+|++|.+....+ ....+++|+.|+|++..++.-. ...+...++|+.|+|++|.+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCcc
Confidence 678888888887776533 3566788888888776654211 12245678888888887654
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.05 E-value=0.0043 Score=52.83 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=38.8
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|++|+|++|.+.+..+ ....+++|+.|+|++..++.-. ..++..+++|+.|+|++|.+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCcc
Confidence 678888888887766433 3456777888888776554310 11235677888888877644
No 151
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=95.03 E-value=0.0066 Score=51.49 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=45.8
Q ss_pred ccceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 125 RQKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
.++|++|++++|.+....+. ...+++|+.|+|++..++.. ....+..+++|+.|++++|.+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCEEECcCCcc
Confidence 37999999999988775443 46789999999988766531 112346789999999998654
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=94.72 E-value=0.013 Score=49.77 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=46.5
Q ss_pred ccceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 125 RQKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
.++|++|+|++|.+....+. ...+++|+.|+|++..+..-. ...+..+++|+.|.+.+|.+
T Consensus 56 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCB
T ss_pred CcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhccccCCCEEEeCCCCc
Confidence 37899999999998875543 468899999999887665311 12356789999999998765
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=94.60 E-value=0.016 Score=48.92 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=46.0
Q ss_pred ccceeEEEEeceEecCCCCC-CccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 125 RQKLEVLALAHNTITGVEPN-FQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~~-~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
.++|++|+|++|.+....+. ...+++|+.|+|++..++.-. ...+..+++|+.|+|.+|.+
T Consensus 53 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCB
T ss_pred cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCCC
Confidence 37899999999988875553 468899999999887665311 12355789999999998755
No 154
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=93.82 E-value=0.014 Score=61.38 Aligned_cols=41 Identities=17% Similarity=0.056 Sum_probs=24.1
Q ss_pred CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 144 NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 144 ~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
....++.|+.|+|++..+.. +..-+..++.|+.|+|++|.+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l 259 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSL 259 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCC
T ss_pred hhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcC
Confidence 34566778888887765542 111122678888888887655
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.98 E-value=0.18 Score=48.92 Aligned_cols=13 Identities=38% Similarity=0.273 Sum_probs=7.2
Q ss_pred CccccccceeEEe
Q 046555 145 FQRFPCLKSLSLS 157 (418)
Q Consensus 145 ~~~~p~L~~L~L~ 157 (418)
+.+|++|+.+.|.
T Consensus 176 F~~c~~L~~l~l~ 188 (401)
T 4fdw_A 176 FYYCYNLKKADLS 188 (401)
T ss_dssp TTTCTTCCEEECT
T ss_pred hhCcccCCeeecC
Confidence 4455556666554
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=91.84 E-value=0.033 Score=52.55 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=38.0
Q ss_pred cceeEEEEec-eEecCCCC-CCccccccceeEEeeEEecHHHHHHHHHcCcccceeeecCCcc
Q 046555 126 QKLEVLALAH-NTITGVEP-NFQRFPCLKSLSLSYVSISALDLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 126 ~~L~~L~L~~-~~l~~~~~-~~~~~p~L~~L~L~~v~~~~~~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
++|+.|+|++ |.+....+ ....+++|+.|+|++..++.-. ...+..+++|+.|+|++|.+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCC
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCcc
Confidence 5688888875 66655332 3556778888888776554311 11245678888888877655
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.15 E-value=0.52 Score=40.69 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=69.8
Q ss_pred CcCCceeEEeeccccchH----HHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecc-c-ceec-
Q 046555 261 TVDNLEIVDVSSFTIFWP----KFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLK-D-GVLH- 333 (418)
Q Consensus 261 ~~~~L~~l~l~~~~~~~~----~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~-~-~~l~- 333 (418)
.-+.|++|++++....++ .+.+.+..-+.|+.|.|.+..+.+.....+......=..|++|+|+.+.. + |...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 346788888876422222 23455666778999998776554333333333344446799999988632 2 3221
Q ss_pred -ccccCCCCcceEEEEecCCc---ccccchHHHHHHHHhcCcccceEEEe
Q 046555 334 -YGLQGSANLENVAVLELGWP---VISDLFSHWVEGLLKRCPNLRRLVIF 379 (418)
Q Consensus 334 -~~l~~~~~Le~l~vl~l~~~---~~~d~~~~~l~~ll~~c~~Lk~L~i~ 379 (418)
..+..-+ .|+.|+++.. .+++.....+...|+.-+.|++|.+.
T Consensus 119 a~aL~~N~---tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 119 LRSTLVTQ---SIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHHTTTTC---CCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHhhCC---ceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 2233333 3445566532 56665555567778888999999986
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=89.79 E-value=1.3 Score=42.71 Aligned_cols=93 Identities=11% Similarity=0.255 Sum_probs=48.1
Q ss_pred cceeEEEEece--EecCCCCCCccccccceeEEee-E-EecHHHHHHHHHcCcccceeeecCCcccccccceeEEecCCc
Q 046555 126 QKLEVLALAHN--TITGVEPNFQRFPCLKSLSLSY-V-SISALDLSLLLTACQKIEILELVSPEIAMLDAQVTVELTSPT 201 (418)
Q Consensus 126 ~~L~~L~L~~~--~l~~~~~~~~~~p~L~~L~L~~-v-~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~~~~~~i~~~~ 201 (418)
.+|+.+.|..+ .+.+ ..+.++ +|+++.|.. + .+.+.. +.+|++|+.+.+..+.+..-... ...+.+
T Consensus 135 ~~L~~i~l~~~i~~I~~--~aF~~~-~L~~i~lp~~l~~I~~~a----F~~c~~L~~l~l~~n~l~~I~~~---aF~~~~ 204 (401)
T 4fdw_A 135 SQIAKVVLNEGLKSIGD--MAFFNS-TVQEIVFPSTLEQLKEDI----FYYCYNLKKADLSKTKITKLPAS---TFVYAG 204 (401)
T ss_dssp CCCSEEECCTTCCEECT--TTTTTC-CCCEEECCTTCCEECSST----TTTCTTCCEEECTTSCCSEECTT---TTTTCC
T ss_pred CCccEEEeCCCccEECH--HhcCCC-CceEEEeCCCccEehHHH----hhCcccCCeeecCCCcceEechh---hEeecc
Confidence 36888887654 2322 123333 588888754 2 233332 46799999999976543211111 011345
Q ss_pred ccEEEEEeeccceEE----EeCCCccEEEeec
Q 046555 202 LKSIYVEAISLDKFI----LEADSIERLHLKD 229 (418)
Q Consensus 202 L~~L~l~~~~~~~~~----~~~P~L~~L~l~~ 229 (418)
|+.+.+.. .+..+. ..|++|+.+++.+
T Consensus 205 L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 205 IEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTCTTCCCEECCT
T ss_pred cCEEEeCC-chheehhhHhhCCCCCCEEecCC
Confidence 56555541 111111 1267777777754
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=87.13 E-value=0.72 Score=41.90 Aligned_cols=89 Identities=25% Similarity=0.212 Sum_probs=48.2
Q ss_pred hcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCCCCcceEEEEecCCcccccch---HH
Q 046555 285 SRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGSANLENVAVLELGWPVISDLF---SH 361 (418)
Q Consensus 285 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~~~Le~l~vl~l~~~~~~d~~---~~ 361 (418)
..+++|+.|+|.+-.+..- ..++.....+|+|+.|+|+++...+. ..+.....+ +|+.|.+..+.+.+.+ ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l--~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRL--DDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGL-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCCC--GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred hhCCCCCEEECCCCCCCCC--ccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccC-CcceEEccCCcCccccCcchh
Confidence 3467777777654333211 11223345788888888887643321 111222222 4556667666554321 12
Q ss_pred HHHHHHhcCcccceEEE
Q 046555 362 WVEGLLKRCPNLRRLVI 378 (418)
Q Consensus 362 ~l~~ll~~c~~Lk~L~i 378 (418)
....+++.+|+|+.|.=
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 33467788999988763
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=84.46 E-value=0.32 Score=44.21 Aligned_cols=60 Identities=27% Similarity=0.286 Sum_probs=43.5
Q ss_pred ccceeEEEEeceEecCCCC---CCccccccceeEEeeEEecHH-HHHHHHHcCcccceeeecCCcc
Q 046555 125 RQKLEVLALAHNTITGVEP---NFQRFPCLKSLSLSYVSISAL-DLSLLLTACQKIEILELVSPEI 186 (418)
Q Consensus 125 ~~~L~~L~L~~~~l~~~~~---~~~~~p~L~~L~L~~v~~~~~-~l~~ll~~cp~Le~L~l~~~~~ 186 (418)
.++|++|+|++|.+.+..+ ....+|+|+.|+|++..+++. ++.. +.+. .|++|.|.+|.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSL 232 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTT
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcC
Confidence 3789999999998876432 234789999999988877653 4443 2233 899999998765
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=79.47 E-value=0.3 Score=45.79 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=18.3
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeEEe
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYVSI 161 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v~~ 161 (418)
++|+.|+|++|.+.+..+ .+..+++|+.|+|++..+
T Consensus 56 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred cCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 455555555555544322 234455555555555443
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=71.34 E-value=4.9 Score=38.16 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=49.1
Q ss_pred CcCCceeEEeecc-ccchHHHHHhhhcCCCccEEEEcccccCccccccHhHHhhcCCCCceeeeeeecccceecccccCC
Q 046555 261 TVDNLEIVDVSSF-TIFWPKFYQMISRSSKLKKLRLWDVVFDEDEVLDLETIGVCFPQLSHLSLSYDLKDGVLHYGLQGS 339 (418)
Q Consensus 261 ~~~~L~~l~l~~~-~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~~fp~L~~L~l~~~~~~~~l~~~l~~~ 339 (418)
.+.+|+.+.+... ....+ ..+..|.+|+.+.+.+. .. .+.. ..+..|.+|+.+.+..... ..-.....+|
T Consensus 295 ~~~~L~~i~l~~~i~~I~~---~aF~~c~~L~~i~lp~~-v~---~I~~-~aF~~c~~L~~i~lp~~l~-~I~~~aF~~C 365 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGE---EAFESCTSLVSIDLPYL-VE---EIGK-RSFRGCTSLSNINFPLSLR-KIGANAFQGC 365 (394)
T ss_dssp TCTTCCEEEECTTCCEECT---TTTTTCTTCCEECCCTT-CC---EECT-TTTTTCTTCCEECCCTTCC-EECTTTBTTC
T ss_pred ccccccccccccccceech---hhhcCCCCCCEEEeCCc-cc---EEhH-HhccCCCCCCEEEECcccc-EehHHHhhCC
Confidence 5677777766432 11111 12455778888876421 10 0110 1234567788877643211 1112456788
Q ss_pred CCcceEEEEecCCcccccchHHHHHHHHhcCcccceE
Q 046555 340 ANLENVAVLELGWPVISDLFSHWVEGLLKRCPNLRRL 376 (418)
Q Consensus 340 ~~Le~l~vl~l~~~~~~d~~~~~l~~ll~~c~~Lk~L 376 (418)
++|+.+.+=. ....+.. --.+|++||.+
T Consensus 366 ~~L~~i~lp~-~~~~~~~--------~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPK-RLEQYRY--------DFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEG-GGGGGGG--------GBCTTCEEEEE
T ss_pred CCCCEEEECC-CCEEhhh--------eecCCCCCcEE
Confidence 8888876421 1111211 13578888875
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=69.07 E-value=2.7 Score=36.10 Aligned_cols=98 Identities=9% Similarity=0.063 Sum_probs=58.5
Q ss_pred HHHHhhhcCCCccEEEEccc-ccCccccccHhHHhhcCCCCceeeeeeec-cc-ceec--ccccCCCCcceEEEEecCCc
Q 046555 279 KFYQMISRSSKLKKLRLWDV-VFDEDEVLDLETIGVCFPQLSHLSLSYDL-KD-GVLH--YGLQGSANLENVAVLELGWP 353 (418)
Q Consensus 279 ~~~~~l~~~~~L~~L~L~~~-~~~~~~~~~~~~l~~~fp~L~~L~l~~~~-~~-~~l~--~~l~~~~~Le~l~vl~l~~~ 353 (418)
.+..++..-+.|+.|+|.+. ...+.....+......-..|++|+|+++. .+ |... ..+..-+ .|+.|+++++
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~---tL~~L~L~~N 108 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP---SLRVLNVESN 108 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS---SCCEEECCSS
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC---ccCeEecCCC
Confidence 35556677889999998653 32211111111112233479999998863 22 2211 1222222 4667889999
Q ss_pred ccccchHHHHHHHHhcCcccceEEEe
Q 046555 354 VISDLFSHWVEGLLKRCPNLRRLVIF 379 (418)
Q Consensus 354 ~~~d~~~~~l~~ll~~c~~Lk~L~i~ 379 (418)
.|+|.....+..-|+.-+.|+.|.|.
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECC
Confidence 99986555555566666789999996
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=48.68 E-value=7.4 Score=30.68 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=19.5
Q ss_pred cceeEEEEeceEecCCCC-CCccccccceeEEeeE
Q 046555 126 QKLEVLALAHNTITGVEP-NFQRFPCLKSLSLSYV 159 (418)
Q Consensus 126 ~~L~~L~L~~~~l~~~~~-~~~~~p~L~~L~L~~v 159 (418)
++|+.|+|++|.++.+.+ .+..+++|+.|.|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 467777777776655332 2344556666665544
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=21.29 E-value=58 Score=30.51 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=45.4
Q ss_pred cccceeEEEEece--EecCCCCCCccccccceeEEe-eE-EecHHHHHHHHHcCcccceeeecCCcc-cccccceeEEec
Q 046555 124 GRQKLEVLALAHN--TITGVEPNFQRFPCLKSLSLS-YV-SISALDLSLLLTACQKIEILELVSPEI-AMLDAQVTVELT 198 (418)
Q Consensus 124 ~~~~L~~L~L~~~--~l~~~~~~~~~~p~L~~L~L~-~v-~~~~~~l~~ll~~cp~Le~L~l~~~~~-~~~~~~~~~~i~ 198 (418)
.|+.|+.+.+... .+.+ ..+.+|.+|+++.|. ++ .+.+.. +.+|.+|+.+.+-..-- ....++ -.
T Consensus 286 ~c~~L~~i~l~~~i~~I~~--~aF~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~sv~~I~~~aF----~~ 355 (394)
T 4gt6_A 286 NCPALQDIEFSSRITELPE--SVFAGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSSVTKIPESAF----SN 355 (394)
T ss_dssp TCTTCCEEECCTTCCEECT--TTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTTCCBCCGGGG----TT
T ss_pred cccccccccCCCcccccCc--eeecCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcccCEEhHhHh----hC
Confidence 4688888888643 2322 346778889999884 34 354433 45799999998853200 001111 12
Q ss_pred CCcccEEEEEe
Q 046555 199 SPTLKSIYVEA 209 (418)
Q Consensus 199 ~~~L~~L~l~~ 209 (418)
+.+|+.+.+.+
T Consensus 356 C~~L~~i~~~~ 366 (394)
T 4gt6_A 356 CTALNNIEYSG 366 (394)
T ss_dssp CTTCCEEEESS
T ss_pred CCCCCEEEECC
Confidence 46788887763
Done!