BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046556
(633 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YQ3|A Chain A, Avian Respiratory Complex Ii With Oxaloacetate And
Ubiquinone
pdb|1YQ4|A Chain A, Avian Respiratory Complex Ii With 3-Nitropropionate And
Ubiquinone
pdb|2FBW|A Chain A, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2FBW|N Chain N, Avian Respiratory Complex Ii With Carboxin Bound
pdb|2H88|A Chain A, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H88|N Chain N, Avian Mitochondrial Respiratory Complex Ii At 1.8 Angstrom
Resolution
pdb|2H89|A Chain A, Avian Respiratory Complex Ii With Malonate Bound
pdb|2WQY|A Chain A, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
pdb|2WQY|N Chain N, Remodelling Of Carboxin Binding To The Q-Site Of Avian
Respiratory Complex Ii
Length = 621
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/614 (65%), Positives = 471/614 (76%), Gaps = 25/614 (4%)
Query: 41 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM 100
Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM
Sbjct: 12 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNM 71
Query: 101 TEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFG 160
+D+WRWH YDTVKGSDWLGDQDAI YM +AP AVIELENYG+PFSRTE+GKIYQRAFG
Sbjct: 72 EDDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPAAVIELENYGMPFSRTEEGKIYQRAFG 131
Query: 161 GQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQG 220
GQSL FGKGGQA+RC C ADRTGH+LLHTLYG++++++T +FVEYFALDL+M +G C+G
Sbjct: 132 GQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLME-NGECRG 190
Query: 221 VIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFV 280
VIAL +EDGT+HRFRA +T++ATGGYGR YFS TSAHT TGDG AMV+RAGLP +DLEFV
Sbjct: 191 VIALCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFV 250
Query: 281 QFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIR 340
QFHPTGIYGAGCL+ + G RGEGGIL NS+GERFMERYAP AKDLASRDVVSRSMT+EIR
Sbjct: 251 QFHPTGIYGAGCLITE-GCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTIEIR 309
Query: 341 EGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGG 400
EGRG GP KDH+YL L+HLPP L RLPGISETA IFAGVDVTKEPIPVLPTVHYNMGG
Sbjct: 310 EGRGCGPEKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGG 369
Query: 401 IPTNHHGEVVT-IKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANR 459
IPTN+ G+V+T + G+ D+VVPGL A GEAA ASVHGANRLGANSLLD+VVFGRACA
Sbjct: 370 IPTNYKGQVITHVNGE--DKVVPGLYACGEAASASVHGANRLGANSLLDLVVFGRACALT 427
Query: 460 VAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQE 519
+AE +PGE ++ NAGE +VA LDK+R ++G+I TS+ RLNMQ+ MQ++AAVFRT
Sbjct: 428 IAETCKPGEPVPSIKPNAGEESVANLDKLRFADGTIRTSEARLNMQKTMQSHAAVFRTGS 487
Query: 520 TLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRG 579
L+EGC+ + + + +K DR ++WNTD A T++ AEARKESRG
Sbjct: 488 ILQEGCEKLSQIYRDLAHLKTFDRGIVWNTDLVETLELQNLMLCALQTIYGAEARKESRG 547
Query: 580 AHAREDFTKRDD-----------------ENWMKHTLGYWENE--KVRLDYRPVHMNTLD 620
AHARED+ R D E+W KHTL Y + + KV L YRPV TL+
Sbjct: 548 AHAREDYKLRIDEFDYSKPLQGQQKRPFEEHWRKHTLSYVDVKSGKVTLKYRPVIDRTLN 607
Query: 621 DE-IESFPPKARVY 633
+E S PP R Y
Sbjct: 608 EEDCSSVPPAIRSY 621
>pdb|1ZOY|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
From Porcine Heart At 2.4 Angstroms
pdb|1ZP0|A Chain A, Crystal Structure Of Mitochondrial Respiratory Complex Ii
Bound With 3-Nitropropionate And
2-Thenoyltrifluoroacetone
pdb|3ABV|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-Biphenyl-3-Yl-2-Trifluoromethyl-Benzamide
pdb|3AE1|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Phenyl-2-(Trifluoromethyl)-Benzamide
pdb|3AE2|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Hydroxy-N-Phenyl-Benzamide
pdb|3AE3|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Nitro-N-Phenyl-Benzamide
pdb|3AE4|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Methyl-Benzamide
pdb|3AE5|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Methyl-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE6|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-(3-Isopropoxy-Phenyl)-Phthalamicacid
pdb|3AE7|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(3-Isopropoxy-Phenyl)-Benzamide
pdb|3AE8|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Isopropoxy-Phenyl)-2-Trifluoromethylbenzamide
pdb|3AE9|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Pentafluorophenyloxy-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEA|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Dimethylaminomethyl-Phenyl)-2-Trifluoromethyl-
Benzamide
pdb|3AEB|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With
N-(3-Phenoxy-Phenyl)-2-Trifluoromethyl-Benzamide
pdb|3AEC|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-(1-Methylethyl)-Benzamid
pdb|3AED|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With 2-Iodo-N-Phenyl-Benzamide
pdb|3AEE|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With Atpenin A5
pdb|3AEF|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii With An Empty Quinone-Binding Pocket
pdb|3AEG|A Chain A, Crystal Structure Of Porcine Heart Mitochondrial Complex
Ii Bound With N-Biphenyl-3-Yl-2-Iodo-Benzamide
pdb|3SFD|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Pentachlorophenol
pdb|3SFE|A Chain A, Crystal Structure Of Porcine Mitochondrial Respiratory
Complex Ii Bound With Oxaloacetate And Thiabendazole
Length = 622
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/614 (64%), Positives = 472/614 (76%), Gaps = 25/614 (4%)
Query: 41 YTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM 100
Y +VDH +D LSE GFNTAC+TKLFPTRSHTVAAQGGINAALGNM
Sbjct: 13 YPVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNM 72
Query: 101 TEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFG 160
ED+WRWH YDTVKGSDWLGDQDAI YM +AP +V+ELENYG+PFSRTEDGKIYQRAFG
Sbjct: 73 EEDNWRWHFYDTVKGSDWLGDQDAIHYMTEQAPASVVELENYGMPFSRTEDGKIYQRAFG 132
Query: 161 GQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQG 220
GQSL FGKGGQA+RC C ADRTGH+LLHTLYG++++++T +FVEYFALDL+M +G C+G
Sbjct: 133 GQSLKFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYFVEYFALDLLME-NGECRG 191
Query: 221 VIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFV 280
VIAL +EDG++HR RA +T++ATGGYGR YFS TSAHT TGDG AMV+RAGLP +DLEFV
Sbjct: 192 VIALCIEDGSIHRIRARNTVVATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFV 251
Query: 281 QFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIR 340
QFHPTGIYGAGCL+ + G RGEGGIL NS+GERFMERYAP AKDLASRDVVSRSMT+EIR
Sbjct: 252 QFHPTGIYGAGCLITE-GCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTLEIR 310
Query: 341 EGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGG 400
EGRG GP KDH+YL L+HLPP+ L RLPGISETA IFAGVDVTKEPIPVLPTVHYNMGG
Sbjct: 311 EGRGCGPEKDHVYLQLHHLPPEQLAVRLPGISETAMIFAGVDVTKEPIPVLPTVHYNMGG 370
Query: 401 IPTNHHGEVVT-IKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANR 459
IPTN+ G+V+ + G D+VVPGL A GEAACASVHGANRLGANSLLD+VVFGRACA
Sbjct: 371 IPTNYKGQVLRHVNGQ--DQVVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACALS 428
Query: 460 VAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQE 519
+AE RPG+K ++ NAGE +V LDK+R +NG+I TS++RL+MQ+ MQ++AAVFR
Sbjct: 429 IAESCRPGDKVPSIKPNAGEESVMNLDKLRFANGTIRTSELRLSMQKSMQSHAAVFRVGS 488
Query: 520 TLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRG 579
L+EGC+ I + + +K DR ++WNTD A T++ AEARKESRG
Sbjct: 489 VLQEGCEKILRLYGDLQHLKTFDRGMVWNTDLVETLELQNLMLCALQTIYGAEARKESRG 548
Query: 580 AHAREDFTKRDD-----------------ENWMKHTLGYWENE--KVRLDYRPVHMNTLD 620
AHAREDF +R D E+W KHTL Y + + KV L+YRPV TL+
Sbjct: 549 AHAREDFKERVDEYDYSKPIQGQQKKPFQEHWRKHTLSYVDVKTGKVSLEYRPVIDKTLN 608
Query: 621 D-EIESFPPKARVY 633
+ + + PP R Y
Sbjct: 609 EADCATVPPAIRSY 622
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/639 (58%), Positives = 453/639 (70%), Gaps = 28/639 (4%)
Query: 16 SKRSVSNDSLRSHFSRL-FSTNSTGGYTIVDHTYDXXXXXXXXXXXXXXXXLSEHGFNTA 74
++R++S S SRL ST++ Y ++DH YD L E GF TA
Sbjct: 14 ARRTLSVSS-----SRLDVSTSNIAQYKVIDHAYDVVIIGAGGAGLRAAMGLGEAGFKTA 68
Query: 75 CITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPK 134
+TK+FPTRSHT AAQGGINAALG+M DDW+WH YDT KGSDWLGDQ+A+ Y+ R A +
Sbjct: 69 VVTKMFPTRSHTTAAQGGINAALGSMNPDDWKWHFYDTAKGSDWLGDQNAMHYLTRNAVE 128
Query: 135 AVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQA 194
AV ELEN+G+PFSRT +GKIYQR+FGGQS ++GKGG A R C ADRTGH++LHTLYG +
Sbjct: 129 AVTELENFGMPFSRTPEGKIYQRSFGGQSNNYGKGGVAKRTCCVADRTGHSMLHTLYGNS 188
Query: 195 MKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSAT 254
++ + FF+EYFALDL+M+ G C GVIAL +EDGT+HRFR+ TI+ATGGYGRAYFS T
Sbjct: 189 LRCHCTFFIEYFALDLLMDK-GRCVGVIALCLEDGTIHRFRSKRTIVATGGYGRAYFSCT 247
Query: 255 SAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERF 314
+AH TGDG A+ +RAG+ LEDLEF+QFHPTGIYG GCL+ + GSRGEGG L NSEGERF
Sbjct: 248 TAHMNTGDGTALATRAGIALEDLEFIQFHPTGIYGVGCLITE-GSRGEGGFLVNSEGERF 306
Query: 315 MERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISET 374
MERYAP AKDLASRDVVSR+ T+EI EGRGVGP KDHIYL L+HLP + L +RLPGISET
Sbjct: 307 MERYAPKAKDLASRDVVSRAETIEIMEGRGVGPEKDHIYLQLHHLPAEQLHQRLPGISET 366
Query: 375 AAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACAS 434
A IFAGVDVTKEPIPV+PTVHYNMGGIPTN+ +V+ + D++VPGL A GE AC S
Sbjct: 367 AKIFAGVDVTKEPIPVIPTVHYNMGGIPTNYKAQVIKYTKEGGDKIVPGLYACGECACHS 426
Query: 435 VHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGS 494
VHGANRLGANSLLD VVFGRAC+ + E +P EK L AGE ++A LD +R +NG
Sbjct: 427 VHGANRLGANSLLDAVVFGRACSINIKEELKPDEKIPELPEGAGEESIANLDAVRYANGD 486
Query: 495 IPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXX 554
+PT+++RL MQ+ MQ +A VFR + L EG + + + +K TDRSLIWN+D
Sbjct: 487 VPTAELRLTMQKTMQKHAGVFRRGDILAEGVKKMMDLSKELKRLKTTDRSLIWNSDLTES 546
Query: 555 XXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDE-----------------NWMKH 597
A T+ +AE RKESRGAHAR+DF KR+DE +W KH
Sbjct: 547 LELQNLMLNATQTIVAAENRKESRGAHARDDFPKREDEYDYSKPIEGQTKRPFEKHWRKH 606
Query: 598 TLGYWENEK--VRLDYRPVHMNTLDD-EIESFPPKARVY 633
TL + + LDYRPV TLD E++ PP R Y
Sbjct: 607 TLTKQDPRTGHITLDYRPVIDKTLDPAEVDWIPPIIRSY 645
>pdb|1NEK|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WP9|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WS3|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU2|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU5|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 588
Score = 539 bits (1389), Expect = e-153, Method: Compositional matrix adjust.
Identities = 304/573 (53%), Positives = 375/573 (65%), Gaps = 15/573 (2%)
Query: 66 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125
+S+ G A ++K+FPTRSHTV+AQGGI ALGN ED+W WHMYDTVKGSD++GDQDAI
Sbjct: 26 ISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85
Query: 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHA 185
+YMC+ P+A++ELE+ GLPFSR +DG+IYQR FGGQS +FG G QA R A AADRTGHA
Sbjct: 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG-GEQAARTAAAADRTGHA 144
Query: 186 LLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGG 245
LLHTLY Q +K++T F E++ALDL+ N DG G AL +E G + F+A +T+LATGG
Sbjct: 145 LLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGG 204
Query: 246 YGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGI 305
GR Y S T+AH TGDG M RAG+P++D+E QFHPTGI GAG L+ + G RGEGG
Sbjct: 205 AGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTE-GCRGEGGY 263
Query: 306 LRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGV-GPLKDHIYLHLNHLPPDVL 364
L N GERFMERYAP AKDLA RDVV+RS+ +EIREGRG GP H L L+HL +VL
Sbjct: 264 LLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVL 323
Query: 365 KERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGL 424
+ RLPGI E + FA VD KEPIPV+PT HY MGGIPT G+ +T+ D VVPGL
Sbjct: 324 ESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGL 383
Query: 425 MAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAW 484
A GE AC SVHGANRLG NSLLD+VVFGRA +Q +Q L + + A
Sbjct: 384 FAVGEIACVSVHGANRLGGNSLLDLVVFGRAAG---LHLQESIAEQGALRDASESDVEAS 440
Query: 485 LD----KIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKL 540
LD N NG P + IR +Q MQ+N +VFR + + +G + + E + +L
Sbjct: 441 LDRLNRWNNNRNGEDPVA-IRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARL 499
Query: 541 TDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLG 600
D S +NT A T SA R ESRGAH+R DF RDDENW+ H+L
Sbjct: 500 DDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLY 559
Query: 601 YWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 633
E+E + R V+M +FPPK R Y
Sbjct: 560 LPESES--MTRRSVNMEP--KLRPAFPPKIRTY 588
>pdb|2B76|A Chain A, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|M Chain M, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
Length = 602
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 228/577 (39%), Positives = 315/577 (54%), Gaps = 46/577 (7%)
Query: 74 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAP 133
A I+K++P RSHTVAAQGG A + D + +H +DTV G DWL +QD + Y P
Sbjct: 34 ALISKVYPMRSHTVAAQGGSAAVAQD--HDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCP 91
Query: 134 KAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQ 193
+ +LE +G P+SR DG + R FGG ++ R AAD+TG +LHTL+
Sbjct: 92 TEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLFQT 143
Query: 194 AMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFS 252
+++ Q F E+F LD++++ DG +G++A+NM +GTL + RA + ++ATGG GR Y
Sbjct: 144 SLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRY 202
Query: 253 ATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGE 312
T+ TGDG M G+PL D+EFVQ+HPTG+ G+G L+ + G RGEGGIL N G
Sbjct: 203 NTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTE-GCRGEGGILVNKNGY 261
Query: 313 RFMERYA---------PTAK--DLASRDVVSRSMTMEIREGRGVG-PLKDHIYLHLNHLP 360
R+++ Y P K +L RD VS++ E R+G + P D +YL L HL
Sbjct: 262 RYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLG 321
Query: 361 PDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEV 420
L ERLP I E A + GVD KEPIPV PT HY MGGI T+ + E
Sbjct: 322 EKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCET----------R 371
Query: 421 VPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAE-IQRPGEKQKPLENNAGE 479
+ GL A GE + +HGANRLG+NSL ++VVFGR + E G +
Sbjct: 372 IKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAA 431
Query: 480 RTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVK 539
L + N +G +KIR M M+ ++RT E +++ + + E F V+
Sbjct: 432 GVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVR 491
Query: 540 LTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAR--EDFTKRDDENWMKH 597
+TD S ++NTD A HSA ARKESRGAH R E T+RDD N++KH
Sbjct: 492 ITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKH 551
Query: 598 TLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 633
TL + + + RL+Y V + TL PP RVY
Sbjct: 552 TLAFRDADGTTRLEYSDVKITTL-------PPAKRVY 581
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|A Chain A, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|M Chain M, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
Length = 602
Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust.
Identities = 227/577 (39%), Positives = 315/577 (54%), Gaps = 46/577 (7%)
Query: 74 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAP 133
A I+K++P RSHTVAA+GG A + D + +H +DTV G DWL +QD + Y P
Sbjct: 34 ALISKVYPMRSHTVAAEGGSAAVAQD--HDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCP 91
Query: 134 KAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQ 193
+ +LE +G P+SR DG + R FGG ++ R AAD+TG +LHTL+
Sbjct: 92 TEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLFQT 143
Query: 194 AMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFS 252
+++ Q F E+F LD++++ DG +G++A+NM +GTL + RA + ++ATGG GR Y
Sbjct: 144 SLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRY 202
Query: 253 ATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGE 312
T+ TGDG M G+PL D+EFVQ+HPTG+ G+G L+ + G RGEGGIL N G
Sbjct: 203 NTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTE-GCRGEGGILVNKNGY 261
Query: 313 RFMERYA---------PTAK--DLASRDVVSRSMTMEIREGRGVG-PLKDHIYLHLNHLP 360
R+++ Y P K +L RD VS++ E R+G + P D +YL L HL
Sbjct: 262 RYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLG 321
Query: 361 PDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEV 420
L ERLP I E A + GVD KEPIPV PT HY MGGI T+ + E
Sbjct: 322 EKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCET----------R 371
Query: 421 VPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAE-IQRPGEKQKPLENNAGE 479
+ GL A GE + +HGANRLG+NSL ++VVFGR + E G +
Sbjct: 372 IKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAA 431
Query: 480 RTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVK 539
L + N +G +KIR M M+ ++RT E +++ + + E F V+
Sbjct: 432 GVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVR 491
Query: 540 LTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAR--EDFTKRDDENWMKH 597
+TD S ++NTD A HSA ARKESRGAH R E T+RDD N++KH
Sbjct: 492 ITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKH 551
Query: 598 TLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 633
TL + + + RL+Y V + TL PP RVY
Sbjct: 552 TLAFRDADGTTRLEYSDVKITTL-------PPAKRVY 581
>pdb|3CIR|A Chain A, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|M Chain M, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
Length = 602
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 226/577 (39%), Positives = 314/577 (54%), Gaps = 46/577 (7%)
Query: 74 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAP 133
A I+K++P RSHTVAA+GG A + D + +H +DTV G DWL +QD + Y P
Sbjct: 34 ALISKVYPMRSHTVAAEGGSAAVAQD--HDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCP 91
Query: 134 KAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQ 193
+ +LE +G P+SR DG + R FGG ++ R AAD+TG +LHTL+
Sbjct: 92 TEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLFQT 143
Query: 194 AMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFS 252
+++ Q F E+F LD++++ DG +G++A+NM +GTL + RA + ++ATGG GR Y
Sbjct: 144 SLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRY 202
Query: 253 ATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGE 312
T+ TGDG M G+PL D+EFVQ+HP G+ G+G L+ + G RGEGGIL N G
Sbjct: 203 NTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPAGLPGSGILMTE-GCRGEGGILVNKNGY 261
Query: 313 RFMERYA---------PTAK--DLASRDVVSRSMTMEIREGRGVG-PLKDHIYLHLNHLP 360
R+++ Y P K +L RD VS++ E R+G + P D +YL L HL
Sbjct: 262 RYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLG 321
Query: 361 PDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEV 420
L ERLP I E A + GVD KEPIPV PT HY MGGI T+ + E
Sbjct: 322 EKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCET----------R 371
Query: 421 VPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAE-IQRPGEKQKPLENNAGE 479
+ GL A GE + +HGANRLG+NSL ++VVFGR + E G +
Sbjct: 372 IKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAA 431
Query: 480 RTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVK 539
L + N +G +KIR M M+ ++RT E +++ + + E F V+
Sbjct: 432 GVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVR 491
Query: 540 LTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAR--EDFTKRDDENWMKH 597
+TD S ++NTD A HSA ARKESRGAH R E T+RDD N++KH
Sbjct: 492 ITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKH 551
Query: 598 TLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 633
TL + + + RL+Y V + TL PP RVY
Sbjct: 552 TLAFRDADGTTRLEYSDVKITTL-------PPAKRVY 581
>pdb|3P4R|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|A Chain A, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|M Chain M, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 577
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 222/563 (39%), Positives = 310/563 (55%), Gaps = 39/563 (6%)
Query: 74 ACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAP 133
A I+K++P RSHTVAA+GG A + D + +H +DTV G DWL +QD + Y P
Sbjct: 34 ALISKVYPMRSHTVAAEGGSAAVAQD--HDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCP 91
Query: 134 KAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQ 193
+ +LE +G P+SR DG + R FGG ++ R AAD+TG +LHTL+
Sbjct: 92 TEMTQLELWGCPWSRRPDGSVNVRRFGGMKIE--------RTWFAADKTGFHMLHTLFQT 143
Query: 194 AMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFS 252
+++ Q F E+F LD++++ DG +G++A+NM +GTL + RA + ++ATGG GR Y
Sbjct: 144 SLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRY 202
Query: 253 ATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGE 312
T+ TGDG M G+PL D+EFVQ+HPTG+ G+G L+ + G RGEGGIL N G
Sbjct: 203 NTNGGIVTGDGMGMALSHGVPLRDMEFVQYHPTGLPGSGILMTE-GCRGEGGILVNKNGY 261
Query: 313 RFMERYA---------PTAK--DLASRDVVSRSMTMEIREGRGVG-PLKDHIYLHLNHLP 360
R+++ Y P K +L RD VS++ E R+G + P D +YL L HL
Sbjct: 262 RYLQDYGMGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLG 321
Query: 361 PDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEV 420
L ERLP I E A + GVD KEPIPV PT HY MGGI T+ + E
Sbjct: 322 EKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCET----------R 371
Query: 421 VPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAE-IQRPGEKQKPLENNAGE 479
+ GL A GE + +HGANRLG+NSL ++VVFGR + E G +
Sbjct: 372 IKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAA 431
Query: 480 RTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVK 539
L + N +G +KIR M M+ ++RT E +++ + + E F V+
Sbjct: 432 GVEQRLKDLVNQDGGENWAKIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVR 491
Query: 540 LTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAR--EDFTKRDDENWMKH 597
+TD S ++NTD A HSA ARKESRGAH R E T+RDD N++KH
Sbjct: 492 ITDTSSVFNTDLLYTIELGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKH 551
Query: 598 TLGYWENE-KVRLDYRPVHMNTL 619
TL + + + RL+Y V + TL
Sbjct: 552 TLAFRDADGTTRLEYSDVKITTL 574
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 322 bits (824), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 208/580 (35%), Positives = 304/580 (52%), Gaps = 41/580 (7%)
Query: 67 SEHGFNTACITKLFPTRSHTVAAQGGINAALGN--MTE-DDWRWHMYDTVKGSDWLGDQD 123
+ G +T ++ + RSH+ AAQGG+ A+LGN M++ D+ H DTVKGSDW DQ
Sbjct: 25 QQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQK 84
Query: 124 AIQYMCREAPKAVIELENYGLPFSRTEDGK-----------IYQRAFGG---QSLDFGKG 169
+ APKA+ EL +G+P++R G I + F S DFG G
Sbjct: 85 VARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFG-G 143
Query: 170 GQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDG 229
+ +R AD TGH +L + + +K A+ LI + DG C G + ++ G
Sbjct: 144 TKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALI-HQDGKCYGAVVRDLVTG 202
Query: 230 TLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLP-LEDLEFVQFHPTGIY 288
+ + A T++ATGGYGR Y + T+A C G G A+ G+ L ++E VQFHPT ++
Sbjct: 203 DIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQFHPTPLF 262
Query: 289 GAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGV-GP 347
+G LL + G RG+GGILR+ +G RFM Y P K+LASRDVVSR M IR+G+GV P
Sbjct: 263 PSGILLTE-GCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGVQSP 321
Query: 348 LKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHG 407
H++L ++ L ++ L + E FAG+D ++ PVLP HY+MGGI T++ G
Sbjct: 322 YGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTDYRG 381
Query: 408 EVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPG 467
E + GL +AGEAAC +HG NRLG NS+ + VV G AE
Sbjct: 382 EAK----------LKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE--HCA 429
Query: 468 EKQKPLENNAGERTV----AWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEE 523
Q LE E+ V A++ + S G+ KI+ M+ VM +N +FR LE+
Sbjct: 430 NTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEK 489
Query: 524 GCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAR 583
+ +++ ++ +V + ++ L N + A A R ESRGAH R
Sbjct: 490 AVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRGAHNR 549
Query: 584 EDFTKRDDENWMKHTLGYWENEKV---RLDYRPVHMNTLD 620
ED+ KRDD NW+ TL W N + L+Y + +N ++
Sbjct: 550 EDYPKRDDINWLNRTLASWPNPEQTLPTLEYEALDVNEME 589
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 322 bits (824), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 211/593 (35%), Positives = 308/593 (51%), Gaps = 46/593 (7%)
Query: 67 SEHGFNTACITKLFPTRSHTVAAQGGINAALGN--MTE-DDWRWHMYDTVKGSDWLGDQD 123
+ G +T ++ + RSH+ AAQGG+ A+LGN M++ D+ H DTVKGSDW DQ
Sbjct: 25 QQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQK 84
Query: 124 AIQYMCREAPKAVIELENYGLPFSRTEDGK-----------IYQRAFGG---QSLDFGKG 169
+ APKA+ EL +G+P++R G I + F S DFG G
Sbjct: 85 VARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFG-G 143
Query: 170 GQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDG 229
+ +R AD TGH +L + + +K A+ LI + DG C G + ++ G
Sbjct: 144 TKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALI-HQDGKCYGAVVRDLVTG 202
Query: 230 TLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLP-LEDLEFVQFHPTGIY 288
+ + A T++ATGGYGR Y + T+A C G G A+ G+ L ++E VQFHPT ++
Sbjct: 203 DIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQFHPTPLF 262
Query: 289 GAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGV-GP 347
+G LL + G RG+GGILR+ +G RFM Y P K+LASRDVVSR M IR+G+GV P
Sbjct: 263 PSGILLTE-GCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGVQSP 321
Query: 348 LKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHG 407
H++L ++ L ++ L + E FAG+D ++ PVLP HY+MGGI T++ G
Sbjct: 322 YGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTDYRG 381
Query: 408 EVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPG 467
E + GL +AGEAAC +HG NRLG NS+ + VV G AE
Sbjct: 382 EAK----------LKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE--HCA 429
Query: 468 EKQKPLENNAGERTV----AWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEE 523
Q LE E+ V A++ + S G+ KI+ M+ VM +N +FR LE+
Sbjct: 430 NTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEK 489
Query: 524 GCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAR 583
+ +++ ++ +V + ++ L N + A A R ESRGAH R
Sbjct: 490 SVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRGAHNR 549
Query: 584 EDFTKRDDENWMKHTLGYWENEKV---RLDYRPVHMNTLDDEIESFPPKARVY 633
ED+ KRDD NW+ TL W N + L+Y + +N ++ P+ R Y
Sbjct: 550 EDYPKRDDINWLNRTLASWPNPEQTLPTLEYEALDVNEME-----IAPRYRGY 597
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 321 bits (823), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 208/580 (35%), Positives = 304/580 (52%), Gaps = 41/580 (7%)
Query: 67 SEHGFNTACITKLFPTRSHTVAAQGGINAALGN--MTE-DDWRWHMYDTVKGSDWLGDQD 123
+ G +T ++ + RSH+ AAQGG+ A+LGN M++ D+ H DTVKGSDW DQ
Sbjct: 25 QQKGLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGCDQK 84
Query: 124 AIQYMCREAPKAVIELENYGLPFSRTEDGK-----------IYQRAFGG---QSLDFGKG 169
+ APKA+ EL +G+P++R G I + F S DFG G
Sbjct: 85 VARMFVNTAPKAIRELAAWGVPWTRIHKGDRMAIINAQKTTITEEDFRHGLIHSRDFG-G 143
Query: 170 GQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDG 229
+ +R AD TGH +L + + +K A+ LI + DG C G + ++ G
Sbjct: 144 TKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALI-HQDGKCYGAVVRDLVTG 202
Query: 230 TLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLP-LEDLEFVQFHPTGIY 288
+ + A T++ATGGYGR Y + T+A C G G A+ G+ L ++E VQFHPT ++
Sbjct: 203 DIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGIAQLGNMEAVQFHPTPLF 262
Query: 289 GAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGV-GP 347
+G LL + G RG+GGILR+ +G RFM Y P K+LASRDVVSR M IR+G+GV P
Sbjct: 263 PSGILLTE-GCRGDGGILRDVDGHRFMPDYEPEKKELASRDVVSRRMIEHIRKGKGVQSP 321
Query: 348 LKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHG 407
H++L ++ L ++ L + E FAG+D ++ PVLP HY+MGGI T++ G
Sbjct: 322 YGQHLWLDISILGRKHIETNLRDVQEICEYFAGIDPAEKWAPVLPMQHYSMGGIRTDYRG 381
Query: 408 EVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPG 467
E + GL +AGEAAC +HG NRLG NS+ + VV G AE
Sbjct: 382 EAK----------LKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAE--HCA 429
Query: 468 EKQKPLENNAGERTV----AWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEE 523
Q LE E+ V A++ + S G+ KI+ M+ VM +N +FR LE+
Sbjct: 430 NTQVDLETKTLEKFVKGQEAYMKSLVESKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEK 489
Query: 524 GCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAR 583
+ +++ ++ +V + ++ L N + A A R ESRGAH R
Sbjct: 490 AVKELEELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALCVAKGALDRTESRGAHNR 549
Query: 584 EDFTKRDDENWMKHTLGYWENEKV---RLDYRPVHMNTLD 620
ED+ KRDD NW+ TL W N + L+Y + +N ++
Sbjct: 550 EDYPKRDDINWLNRTLASWPNPEQTLPTLEYEALDVNEME 589
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 151/525 (28%), Positives = 235/525 (44%), Gaps = 63/525 (12%)
Query: 82 TRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELEN 141
T T AQGGI A D H+ DT+ + D+ A++++ A V L +
Sbjct: 42 TEGSTFYAQGGIAAVFDETDSIDS--HVEDTLIAGAGICDRHAVEFVASNARSCVQWLID 99
Query: 142 YGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH-NTQ 200
G+ F D I L G R AAD TG + TL +A+ H N +
Sbjct: 100 QGVLF----DTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIR 155
Query: 201 FFVEYFALDLIMNSD----GT--CQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSAT 254
A+DLI++ GT G N T+ A + +LATGG + Y T
Sbjct: 156 VLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTT 215
Query: 255 SAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIY--GAGCLLLKVGSRGEGGILRNSEGE 312
+ +GDG AM RAG + +LEF QFHPT +Y A LL RGEG L+ +G
Sbjct: 216 NPDISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGT 275
Query: 313 RFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGIS 372
RFM + +LA RD+V+R++ E++ +G D ++L ++H P D +++ P I
Sbjct: 276 RFMPDFDERG-ELAPRDIVARAIDHEMKR---LG--ADCMFLDISHKPADFIRQHFPMIY 329
Query: 373 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAAC 432
E + G+D+T+EP+P++P HY GG+ + HG V GL A GE +
Sbjct: 330 EK-LLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRT----------DVEGLYAIGEVSY 378
Query: 433 ASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSN 492
+HGANR+ +NSLL+ +V+G + A + ++ P ++ ++ N +
Sbjct: 379 TGLHGANRMASNSLLECLVYGWSAAEDIT-------RRMPYAHDISTLPPWDESRVENPD 431
Query: 493 GSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGC-------QLIDKAWESFH--DVKLTDR 543
+ ++ M + + RT + LE Q ID+ + F + L R
Sbjct: 432 ERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELR 491
Query: 544 SLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTK 588
+L+ A + + A RKESRG H D+ +
Sbjct: 492 NLV---------------QVAELIVRCAMMRKESRGLHFTLDYPE 521
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With
Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 150/525 (28%), Positives = 234/525 (44%), Gaps = 63/525 (12%)
Query: 82 TRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELEN 141
T T AQGGI A D H+ DT+ + D+ A++++ A V L +
Sbjct: 42 TEGSTFYAQGGIAAVFDETDSIDS--HVEDTLIAGAGICDRHAVEFVASNARSCVQWLID 99
Query: 142 YGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH-NTQ 200
G+ F D I L G R AAD TG + TL +A+ H N +
Sbjct: 100 QGVLF----DTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIR 155
Query: 201 FFVEYFALDLIMNSD----GT--CQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSAT 254
A+DLI++ GT G N T+ A + +LATGG + Y T
Sbjct: 156 VLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTT 215
Query: 255 SAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIY--GAGCLLLKVGSRGEGGILRNSEGE 312
+ +GDG AM RAG + +LEF QFHPT +Y A LL RGEG L+ +G
Sbjct: 216 NPDISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGT 275
Query: 313 RFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGIS 372
RFM + +LA RD+V+R++ E++ +G D ++L ++H P D +++ P I
Sbjct: 276 RFMPDFDERG-ELAPRDIVARAIDHEMKR---LG--ADCMFLDISHKPADFIRQHFPMIY 329
Query: 373 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAAC 432
E + G+D+T+EP+P++P HY GG+ + HG V GL A GE +
Sbjct: 330 EK-LLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRT----------DVEGLYAIGEVSY 378
Query: 433 ASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSN 492
+HGAN + +NSLL+ +V+G + A + ++ P ++ ++ N +
Sbjct: 379 TGLHGANLMASNSLLECLVYGWSAAEDIT-------RRMPYAHDISTLPPWDESRVENPD 431
Query: 493 GSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGC-------QLIDKAWESFH--DVKLTDR 543
+ ++ M + + RT + LE Q ID+ + F + L R
Sbjct: 432 ERVVIQHNWHELRLFMWDYVGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELR 491
Query: 544 SLIWNTDXXXXXXXXXXXXXACITMHSAEARKESRGAHAREDFTK 588
+L+ A + + A RKESRG H D+ +
Sbjct: 492 NLV---------------QVAELIVRCAMMRKESRGLHFTLDYPE 521
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 141/515 (27%), Positives = 218/515 (42%), Gaps = 91/515 (17%)
Query: 86 TVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLP 145
T A+GG+ A++G ++D H DT++ D L D + Y+ EA + E++G
Sbjct: 37 TPIAKGGVAASVG--SDDSPELHAQDTIRVGDGLCDVKTVNYVTSEAKNVIETFESWGFE 94
Query: 146 FSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEY 205
F + L G R D TG + + L A + +
Sbjct: 95 FE--------------EDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIED- 139
Query: 206 FALDLIMNSDGTCQGVIALN---MEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGD 262
L I DG G + +ED +LATGGY Y +++ T GD
Sbjct: 140 -RLVEIRVKDGKVTGFVTEKRGLVED-------VDKLVLATGGYSYLYEYSSTQSTNIGD 191
Query: 263 GNAMVSRAGLPLEDLEFVQFHPTGIYGAG-CLLLKVGSRGEGGILRNSEGERFMERYAPT 321
G A+ +AG L D+EFVQFHPT G LL RGEG + N GERF+ Y
Sbjct: 192 GMAIAFKAGTILADMEFVQFHPTVTSLDGEVFLLTETLRGEGAQIINENGERFLFNYDKR 251
Query: 322 AKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGV 381
+LA RD++SR++ +E+ +G V ++ L+ + + + P +++ A
Sbjct: 252 G-ELAPRDILSRAIYIEMLKGHKV-------FIDLSKIED--FERKFPVVAKYLARHG-- 299
Query: 382 DVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRL 441
K IP+ P H+ GGI N GE + L A GE + + +HGANRL
Sbjct: 300 HNYKVKIPIFPAAHFVDGGIRVNIRGE----------SNIVNLYAIGEVSDSGLHGANRL 349
Query: 442 GANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIR 501
+NSLL+ +VFG I P E + + + +I + N ++ +IR
Sbjct: 350 ASNSLLEGLVFG---------INLPRYVDSSWEGISTDDGIVHSVRI-SGNKTLSLKEIR 399
Query: 502 LNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXX 561
R+ N + R +E L + + + + ++I
Sbjct: 400 ----RINWENVGIIRNEEKLVKAINTYSSSTQ--------NEAII--------------- 432
Query: 562 XXACITMHSAEARKESRGAHAREDFTKRDDENWMK 596
+ +T +AE RKESRG H RED+ + D NW K
Sbjct: 433 --SYLTALAAEIRKESRGNHFREDYPYK-DPNWEK 464
>pdb|1KSU|A Chain A, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1KSU|B Chain B, Crystal Structure Of His505tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 113/429 (26%), Positives = 181/429 (42%), Gaps = 79/429 (18%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLASR---------------DVVSRSMT-MEIREGRGVGPLKD 350
N EG+RF+ T +D AS D V +S++ ++ G GV P D
Sbjct: 388 VNREGKRFVNEI--TTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTAD 445
Query: 351 HIYL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHY 396
+ + + L E + + + D + +P V P VHY
Sbjct: 446 SLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHY 505
Query: 397 NMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 456
MGG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 506 TMGGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLA 560
Query: 457 ANRVAEIQR 465
A+ +
Sbjct: 561 GEEAAKYSK 569
>pdb|1JRY|A Chain A, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRY|B Chain B, Crystal Structure Of Arg402lys Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 113/429 (26%), Positives = 181/429 (42%), Gaps = 79/429 (18%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLASR---------------DVVSRSMT-MEIREGRGVGPLKD 350
N EG+RF+ T KD AS D V +S++ ++ G GV P D
Sbjct: 388 VNREGKRFVNEI--TTKDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTAD 445
Query: 351 HIYL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHY 396
+ + + L E + + + D + +P V P VH+
Sbjct: 446 SLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHH 505
Query: 397 NMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 456
MGG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 506 TMGGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLA 560
Query: 457 ANRVAEIQR 465
A+ +
Sbjct: 561 GEEAAKYSK 569
>pdb|1P2H|A Chain A, H61m Mutant Of Flavocytochrome C3
Length = 571
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 181/429 (42%), Gaps = 79/429 (18%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLASR---------------DVVSRSMT-MEIREGRGVGPLKD 350
N EG+RF+ T +D AS D V +S++ ++ G GV P D
Sbjct: 388 VNREGKRFVNEI--TTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTAD 445
Query: 351 HIYL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHY 396
+ + + L E + + + D + +P V P VH+
Sbjct: 446 SLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHH 505
Query: 397 NMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 456
MGG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 506 TMGGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLA 560
Query: 457 ANRVAEIQR 465
A+ +
Sbjct: 561 GEEAAKYSK 569
>pdb|1QJD|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina
pdb|1Y0P|A Chain A, Flavocytochrome C3 With Mesaconate Bound
Length = 571
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 181/429 (42%), Gaps = 79/429 (18%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLASR---------------DVVSRSMT-MEIREGRGVGPLKD 350
N EG+RF+ T +D AS D V +S++ ++ G GV P D
Sbjct: 388 VNREGKRFVNEI--TTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTAD 445
Query: 351 HIYL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHY 396
+ + + L E + + + D + +P V P VH+
Sbjct: 446 SLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHH 505
Query: 397 NMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 456
MGG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 506 TMGGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLA 560
Query: 457 ANRVAEIQR 465
A+ +
Sbjct: 561 GEEAAKYSK 569
>pdb|1P2E|A Chain A, H61a Mutant Of Flavocytochrome C3
Length = 571
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 181/429 (42%), Gaps = 79/429 (18%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLASR---------------DVVSRSMT-MEIREGRGVGPLKD 350
N EG+RF+ T +D AS D V +S++ ++ G GV P D
Sbjct: 388 VNREGKRFVNEI--TTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTAD 445
Query: 351 HIYL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHY 396
+ + + L E + + + D + +P V P VH+
Sbjct: 446 SLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHH 505
Query: 397 NMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 456
MGG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 506 TMGGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLA 560
Query: 457 ANRVAEIQR 465
A+ +
Sbjct: 561 GEEAAKYSK 569
>pdb|2B7R|A Chain A, Structure Of E378d Mutant Flavocytochrome C3
Length = 571
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 181/429 (42%), Gaps = 79/429 (18%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT-LSVKGGVMVTDAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLASR---------------DVVSRSMT-MEIREGRGVGPLKD 350
N EG+RF+ T +D AS D V +S++ ++ G GV P D
Sbjct: 388 VNREGKRFVNEI--TTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTAD 445
Query: 351 HIYL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHY 396
+ + + L E + + + D + +P V P VH+
Sbjct: 446 SLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHH 505
Query: 397 NMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 456
MGG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 506 TMGGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLA 560
Query: 457 ANRVAEIQR 465
A+ +
Sbjct: 561 GEEAAKYSK 569
>pdb|1JRX|A Chain A, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRX|B Chain B, Crystal Structure Of Arg402ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 179/427 (41%), Gaps = 75/427 (17%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLAS-------------RDVVSRSMT-MEIREGRGVGPLKDHI 352
N EG+RF+ K A+ D V +S++ ++ G GV P D +
Sbjct: 388 VNREGKRFVNEITTADKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSL 447
Query: 353 YL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHYNM 398
+ + L E + + + D + +P V P VH+ M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTM 507
Query: 399 GGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACAN 458
GG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 508 GGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLAGE 562
Query: 459 RVAEIQR 465
A+ +
Sbjct: 563 EAAKYSK 569
>pdb|1JRZ|A Chain A, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
pdb|1JRZ|B Chain B, Crystal Structure Of Arg402tyr Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 112/427 (26%), Positives = 180/427 (42%), Gaps = 75/427 (17%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMER-----------YAPTAKD--LASRDVVSRSMT-MEIREGRGVGPLKDHI 352
N EG+RF+ A T K L D V +S++ ++ G GV P D +
Sbjct: 388 VNREGKRFVNEITTYDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSL 447
Query: 353 YL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHYNM 398
+ + L E + + + D + +P V P VH+ M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTM 507
Query: 399 GGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACAN 458
GG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 508 GGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLAGE 562
Query: 459 RVAEIQR 465
A+ +
Sbjct: 563 EAAKYSK 569
>pdb|1KSS|A Chain A, Crystal Structure Of His505ala Mutant Flavocytochrome C3
From Shewanella Frigidimarina
Length = 571
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 112/429 (26%), Positives = 180/429 (41%), Gaps = 79/429 (18%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLASR---------------DVVSRSMT-MEIREGRGVGPLKD 350
N EG+RF+ T +D AS D V +S++ ++ G GV P D
Sbjct: 388 VNREGKRFVNEI--TTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTAD 445
Query: 351 HIYL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHY 396
+ + + L E + + + D + +P V P VH
Sbjct: 446 SLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHA 505
Query: 397 NMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 456
MGG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 506 TMGGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLA 560
Query: 457 ANRVAEIQR 465
A+ +
Sbjct: 561 GEEAAKYSK 569
>pdb|2B7S|A Chain A, R381k Mutant Of Flavocytochrome C3
Length = 571
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 181/429 (42%), Gaps = 79/429 (18%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q HPT + G +++ +G G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT-LSVKGGVMVTEAVKGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLASR---------------DVVSRSMT-MEIREGRGVGPLKD 350
N EG+RF+ T +D AS D V +S++ ++ G GV P D
Sbjct: 388 VNREGKRFVNEI--TTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTAD 445
Query: 351 HIYL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHY 396
+ + + L E + + + D + +P V P VH+
Sbjct: 446 SLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHH 505
Query: 397 NMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 456
MGG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 506 TMGGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLA 560
Query: 457 ANRVAEIQR 465
A+ +
Sbjct: 561 GEEAAKYSK 569
>pdb|1Q9I|A Chain A, The A251c:s430c Double Mutant Of Flavocytochrome C3 From
Shewanella Frigidimarina
Length = 571
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 179/429 (41%), Gaps = 79/429 (18%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGCGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAHPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLASR---------------DVVSRSM-TMEIREGRGVGPLKD 350
N EG+RF+ T +D AS D V +S+ ++ G GV P D
Sbjct: 388 VNREGKRFVNEI--TTRDKASAAILAQTGKSAYLIFDDSVRKSLCKIDKYIGLGVAPTAD 445
Query: 351 HIYL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHY 396
+ + + L E + + + D + +P V P VH+
Sbjct: 446 SLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHH 505
Query: 397 NMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 456
MGG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 506 TMGGVMIDTKAEVMNAK----KQVIPGLYGAGEVT-GGVHGANRLGGNAISDIITFGRLA 560
Query: 457 ANRVAEIQR 465
A+ +
Sbjct: 561 GEEAAKYSK 569
>pdb|1M64|A Chain A, Crystal Structure Of Q363f Mutant Flavocytochrome C3
pdb|1M64|B Chain B, Crystal Structure Of Q363f Mutant Flavocytochrome C3
Length = 571
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 180/429 (41%), Gaps = 79/429 (18%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++ HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIFAHPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLASR---------------DVVSRSMT-MEIREGRGVGPLKD 350
N EG+RF+ T +D AS D V +S++ ++ G GV P D
Sbjct: 388 VNREGKRFVNEI--TTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTAD 445
Query: 351 HIYL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHY 396
+ + + L E + + + D + +P V P VH+
Sbjct: 446 SLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHH 505
Query: 397 NMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 456
MGG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 506 TMGGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLA 560
Query: 457 ANRVAEIQR 465
A+ +
Sbjct: 561 GEEAAKYSK 569
>pdb|1E39|A Chain A, Flavocytochrome C3 From Shewanella Frigidimarina Histidine
365 Mutated To Alanine
Length = 571
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 111/429 (25%), Positives = 180/429 (41%), Gaps = 79/429 (18%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++Q PT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIQAAPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLASR---------------DVVSRSMT-MEIREGRGVGPLKD 350
N EG+RF+ T +D AS D V +S++ ++ G GV P D
Sbjct: 388 VNREGKRFVNEI--TTRDKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTAD 445
Query: 351 HIYL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHY 396
+ + + L E + + + D + +P V P VH+
Sbjct: 446 SLVKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHH 505
Query: 397 NMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC 456
MGG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 506 TMGGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLA 560
Query: 457 ANRVAEIQR 465
A+ +
Sbjct: 561 GEEAAKYSK 569
>pdb|1LJ1|A Chain A, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
pdb|1LJ1|B Chain B, Crystal Structure Of Q363fR402A MUTANT FLAVOCYTOCHROME C3
Length = 571
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 178/427 (41%), Gaps = 75/427 (17%)
Query: 89 AQGGINAALGNMTE-----DDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
A GG+NAA + + D DT+KG + D ++ +
Sbjct: 168 AAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLS-------------- 213
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGG-----QAYRCACAADRTGHALLHTLYGQAMKHN 198
S ++D + A G D G G +A+R A H ++ LY A+K N
Sbjct: 214 ---SHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAH-VVQVLYDNAVKRN 269
Query: 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY-------- 250
+ ++++ + GT +G++ M G + +A + ILATGG+ +
Sbjct: 270 IDLRMNTRGIEVLKDDKGTVKGILVKGMYKG-YYWVKADAVILATGGFAKNNERVAKLDP 328
Query: 251 ----FSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGIL 306
F +T+ GDG + AG L+D++++ HPT + G +++ RG G IL
Sbjct: 329 SLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIFAHPT-LSVKGGVMVTEAVRGNGAIL 387
Query: 307 RNSEGERFMERYAPTAKDLAS-------------RDVVSRSMT-MEIREGRGVGPLKDHI 352
N EG+RF+ K A+ D V +S++ ++ G GV P D +
Sbjct: 388 VNREGKRFVNEITTADKASAAILAQTGKSAYLIFDDSVRKSLSKIDKYIGLGVAPTADSL 447
Query: 353 YL--HLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIP------------VLPTVHYNM 398
+ + L E + + + D + +P V P VH+ M
Sbjct: 448 VKLGKMEGIDGKALTETVARYNSLVSSGKDTDFERPNLPRALNEGNYYAIEVTPGVHHTM 507
Query: 399 GGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACAN 458
GG+ + EV+ K +V+PGL AGE VHGANRLG N++ DI+ FGR
Sbjct: 508 GGVMIDTKAEVMNAK----KQVIPGLYGAGEV-TGGVHGANRLGGNAISDIITFGRLAGE 562
Query: 459 RVAEIQR 465
A+ +
Sbjct: 563 EAAKYSK 569
>pdb|1D4C|A Chain A, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|B Chain B, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|C Chain C, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4C|D Chain D, Crystal Structure Of The Uncomplexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
Length = 572
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 187/430 (43%), Gaps = 72/430 (16%)
Query: 85 HTVAAQGGINAA-------LGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVI 137
+T A GG+NAA LG ED + + DT+KG + D + ++ + + ++
Sbjct: 164 NTKLAAGGMNAAETKPQAKLG--IEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSID 221
Query: 138 ELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH 197
L + G T+ G++ GG S++ +++R A H + L+ A+K
Sbjct: 222 WLTSMGADM--TDVGRM-----GGASVN-----RSHRPTGGAGVGAH-VAQVLWDNAVKR 268
Query: 198 NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR--------- 248
T + + ++ ++ G GV+ G + +A + ++A GG+ +
Sbjct: 269 GTDIRLNSRVVRILEDASGKVTGVLVKGEYTG-YYVIKADAVVIAAGGFAKNNERVSKYD 327
Query: 249 ---AYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGI 305
F AT+ TGDG + +AG DLE++Q HPT AG +++ RG G I
Sbjct: 328 PKLKGFKATNHPGATGDGLDVALQAGAATRDLEYIQAHPT-YSPAGGVMITEAVRGNGAI 386
Query: 306 LRNSEGERFMERYAPTAKDLASR---------------DVVSRSM-TME-------IREG 342
+ N EG RFM T +D AS D + +S+ +E ++EG
Sbjct: 387 VVNREGNRFMNEI--TTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEG 444
Query: 343 RGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKE-------PIPVLPTVH 395
+ + L I + L V S A F D+ +E + + P VH
Sbjct: 445 KTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVH 504
Query: 396 YNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRA 455
+ MGG+ + EV + K P + GL AAGE VHGANRLG N++ DIV +GR
Sbjct: 505 HTMGGLVIDTKAEVKSEKTGKP---ITGLYAAGE-VTGGVHGANRLGGNAISDIVTYGRI 560
Query: 456 CANRVAEIQR 465
A+ +
Sbjct: 561 AGASAAKFAK 570
>pdb|1D4D|A Chain A, Crystal Structure Of The Succinate Complexed Form Of The
Flavocytochrome C Fumarate Reductase Of Shewanella
Putrefaciens Strain Mr-1
pdb|1D4E|A Chain A, Crystal Structure Of The Flavocytochrome C Fumarate
Reductase Of Shewanella Putrefaciens Strain Mr-1
Complexed With Fumarate
Length = 572
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 114/430 (26%), Positives = 187/430 (43%), Gaps = 72/430 (16%)
Query: 85 HTVAAQGGINAA-------LGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVI 137
+T A GG+NAA LG ED + + DT+KG + D + ++ + + ++
Sbjct: 164 NTKLAAGGMNAAETKPQAKLG--IEDKKQIMIDDTMKGGRNINDPELVKVLANNSSDSID 221
Query: 138 ELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH 197
L + G T+ G++ GG S++ +++R A H + L+ A+K
Sbjct: 222 WLTSMGADM--TDVGRM-----GGASVN-----RSHRPTGGAGVGAH-VAQVLWDNAVKR 268
Query: 198 NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR--------- 248
T + + ++ ++ G GV+ G + +A + ++A GG+ +
Sbjct: 269 GTDIRLNSRVVRILEDASGKVTGVLVKGEYTG-YYVIKADAVVIAAGGFAKNNERVSKYD 327
Query: 249 ---AYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGI 305
F AT+ TGDG + +AG DL+++Q HPT AG +++ RG G I
Sbjct: 328 PKLKGFKATNHPGATGDGLDVALQAGAATRDLQYIQAHPT-YSPAGGVMITEAVRGNGAI 386
Query: 306 LRNSEGERFMERYAPTAKDLASR---------------DVVSRSM-TME-------IREG 342
+ N EG RFM T +D AS D + +S+ +E ++EG
Sbjct: 387 VVNREGNRFMNEI--TTRDKASAAILQQKGESAYLVFDDSIRKSLKAIEGYVHLNIVKEG 444
Query: 343 RGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKE-------PIPVLPTVH 395
+ + L I + L V S A F D+ +E + + P VH
Sbjct: 445 KTIEELAKQIDVPAAELAKTVTAYNGFVKSGKDAQFERPDLPRELVVAPFYALEIAPAVH 504
Query: 396 YNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRA 455
+ MGG+ + EV + K P + GL AAGE VHGANRLG N++ DIV +GR
Sbjct: 505 HTMGGLVIDTKAEVKSEKTAKP---ITGLYAAGEV-TGGVHGANRLGGNAISDIVTYGRI 560
Query: 456 CANRVAEIQR 465
A+ +
Sbjct: 561 AGASAAKFAK 570
>pdb|1QO8|A Chain A, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
pdb|1QO8|D Chain D, The Structure Of The Open Conformation Of A
Flavocytochrome C3 Fumarate Reductase
Length = 566
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 108/453 (23%), Positives = 189/453 (41%), Gaps = 95/453 (20%)
Query: 70 GFNTACITKLFPTRSHTVAAQGGINAA-----LGNMTEDDWRWHMYDTVKGSDWLGDQDA 124
G N + K + +++ + GG+NA + ED W + D +KG D
Sbjct: 144 GANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKL 203
Query: 125 IQYMCREAPKAVIELENYGL---PFSRTEDGKI--YQRAFGGQSLDFGKGGQAYRCACAA 179
+ + ++ V LE+ G R+ ++ R GG+S
Sbjct: 204 VTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKS---------------- 247
Query: 180 DRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAAST 239
+G ++ TL A + + + L++N D + G + G + A S
Sbjct: 248 --SGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTG-YYMIGAKSV 304
Query: 240 ILATGGYGR-----AYF-------SATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGI 287
+LATGGYG AY+ ++++ T TGDG M G + D+++VQ HPT +
Sbjct: 305 VLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQAHPT-V 363
Query: 288 YGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSR-----------SMT 336
+L+ RG G ++ N +G RF+ T +D AS ++ + +
Sbjct: 364 GKDSRILISETVRGVGAVMVNKDGNRFISEL--TTRDKASDAILKQPGQFAWIIFDNQLY 421
Query: 337 MEIREGRGVGPLKDHIYLHLNHL-PPDVLKE-------RLPGISETAAIFAG-------- 380
+ + RG Y HL L D +++ ++ +++T + + G
Sbjct: 422 KKAKMVRG--------YDHLEMLYKGDTVEQLAKSTGMKVADLAKTVSDYNGYVASGKDT 473
Query: 381 --------VDVTKEP---IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGE 429
+++T+ P + V P +H+ MGG+ N V+ ++ + + GL AAGE
Sbjct: 474 AFGRADMPLNMTQSPYYAVKVAPGIHHTMGGVAINTTASVLDLQ----SKPIDGLFAAGE 529
Query: 430 AACASVHGANRLGANSLLDIVVFGRACANRVAE 462
VHG NRLG N++ D VVFGR + A+
Sbjct: 530 -VTGGVHGYNRLGGNAIADTVVFGRIAGDNAAK 561
>pdb|2FJA|A Chain A, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJA|C Chain C, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJB|A Chain A, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJB|C Chain C, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJD|A Chain A, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJD|C Chain C, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJE|A Chain A, Adenosine-5-Phosphosulfate Reductase Oxidized State
pdb|2FJE|C Chain C, Adenosine-5-Phosphosulfate Reductase Oxidized State
Length = 643
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 125/574 (21%), Positives = 207/574 (36%), Gaps = 121/574 (21%)
Query: 119 LGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACA 178
L +D + R V E +GLP +T DGK Y R Q + G+ + A
Sbjct: 103 LAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGK-YVREGQWQIMIHGESYKPIIAEAA 161
Query: 179 ADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAAS 238
G + N V F L N G + ++ + + F+A +
Sbjct: 162 KMAVG------------EENIYERVFIFELLKDKNDPNAVAGAVGFSVREPKFYVFKAKA 209
Query: 239 TILATGG-------------YGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLE--FVQFH 283
ILATGG GR +++ TG G M +AG L E F+ F
Sbjct: 210 VILATGGATLLFRPRSTGEAAGRTWYAIFD----TGSGYYMGLKAGAMLTQFEHRFIPFR 265
Query: 284 PTGIYG-AGCLLLKVGSRGEGGILRNSEGERF-------MERYAPT-AKDLASRDVVSRS 334
YG G L + +N+ GE + +E+Y P A + +
Sbjct: 266 FKDGYGPVGAWFLFFKCKA-----KNAYGEEYIKTRAAELEKYKPYGAAQPIPTPLRNHQ 320
Query: 335 MTMEIREGRGVGPLKDHIYLH---------------LNHLPPDVLKERLPGISETAAIFA 379
+ +EI +G IY+H L H+ + ++ L A ++A
Sbjct: 321 VMLEIMDGN------QPIYMHTEEALAELAGGDKKKLKHIYEEAFEDFLDMTVSQALLWA 374
Query: 380 --GVDVTKEPIPVLPTVHYNMGGIPTNHHGEV-VTIKGDD---PDE-------------V 420
+D ++P P Y MG +H GE + G + P+E
Sbjct: 375 CQNIDPQEQPSEAAPAEPYIMG----SHSGEAGFWVCGPEDLMPEEYAKLFPLKYNRMTT 430
Query: 421 VPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGE----------KQ 470
V GL A G+ A A+ H + + S + + +A + E Q+P K+
Sbjct: 431 VKGLFAIGDCAGANPH---KFSSGSFTEGRIAAKAAVRFILE-QKPNPEIDDAVVEELKK 486
Query: 471 K---PLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAA----VFRTQE-TLE 522
K P+E + ++ D + N +P + + +Q++M AA +++T E L+
Sbjct: 487 KAYAPMERFMQYKDLSTADDV-NPEYILPWQGL-VRLQKIMDEYAAGIATIYKTNEKMLQ 544
Query: 523 EGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESR--GA 580
+L+ E KL R L + A + RKE+R G
Sbjct: 545 RALELLAFLKEDLE--KLAARDL---HELMRAWELVHRVWTAEAHVRHMLFRKETRWPGY 599
Query: 581 HAREDFTKRDDENWMKHTLGYWENEKVRLDYRPV 614
+ R D+ + +DE W ++ EK + V
Sbjct: 600 YYRTDYPELNDEEWKCFVCSKYDAEKDEWTFEKV 633
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 125/574 (21%), Positives = 207/574 (36%), Gaps = 121/574 (21%)
Query: 119 LGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACA 178
L +D + R V E +GLP +T DGK Y R Q + G+ + A
Sbjct: 103 LAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGK-YVREGQWQIMIHGESYKPIIAEAA 161
Query: 179 ADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAAS 238
G + N V F L N G + ++ + + F+A +
Sbjct: 162 KMAVG------------EENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKA 209
Query: 239 TILATGG-------------YGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLE--FVQFH 283
ILATGG GR +++ TG G M +AG L E F+ F
Sbjct: 210 VILATGGATLLFRPRSTGEAAGRTWYAIFD----TGSGYYMGLKAGAMLTQFEHRFIPFR 265
Query: 284 PTGIYG-AGCLLLKVGSRGEGGILRNSEGERF-------MERYAPT-AKDLASRDVVSRS 334
YG G L + +N+ GE + +E+Y P A + +
Sbjct: 266 FKDGYGPVGAWFLFFKCKA-----KNAYGEEYIKTRAAELEKYKPYGAAQPIPTPLRNHQ 320
Query: 335 MTMEIREGRGVGPLKDHIYLH---------------LNHLPPDVLKERLPGISETAAIFA 379
+ +EI +G IY+H L H+ + ++ L A ++A
Sbjct: 321 VMLEIMDGN------QPIYMHTEEALAELAGGDKKKLKHIYEEAFEDFLDMTVSQALLWA 374
Query: 380 --GVDVTKEPIPVLPTVHYNMGGIPTNHHGEV-VTIKGDD---PDE-------------V 420
+D ++P P Y MG +H GE + G + P+E
Sbjct: 375 CQNIDPQEQPSEAAPAEPYIMG----SHSGEAGFWVCGPEDLMPEEYAKLFPLKYNRMTT 430
Query: 421 VPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGE----------KQ 470
V GL A G+ A A+ H + + S + + +A + E Q+P K+
Sbjct: 431 VKGLFAIGDCAGANPH---KFSSGSFTEGRIAAKAAVRFILE-QKPNPEIDDAVVEELKK 486
Query: 471 K---PLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAA----VFRTQE-TLE 522
K P+E + ++ D + N +P + + +Q++M AA +++T E L+
Sbjct: 487 KAYAPMERFMQYKDLSTADDV-NPEYILPWQGL-VRLQKIMDEYAAGIATIYKTNEKMLQ 544
Query: 523 EGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXXACITMHSAEARKESR--GA 580
+L+ E KL R L + A + RKE+R G
Sbjct: 545 RALELLAFLKEDLE--KLAARDL---HELMRAWELVHRVWTAEAHVRHMLFRKETRWPGY 599
Query: 581 HAREDFTKRDDENWMKHTLGYWENEKVRLDYRPV 614
+ R D+ + +DE W ++ EK + V
Sbjct: 600 YYRTDYPELNDEEWKCFVCSKYDAEKDEWTFEKV 633
>pdb|3GYX|A Chain A, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|C Chain C, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|E Chain E, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|G Chain G, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|I Chain I, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
pdb|3GYX|K Chain K, Crystal Structure Of Adenylylsulfate Reductase From
Desulfovibrio Gigas
Length = 662
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 141/388 (36%), Gaps = 84/388 (21%)
Query: 89 AQG--GINAALGNMTEDDWRWHMYDTVKGSDWLG--DQDAIQYMCREAPKAVIELENYGL 144
AQG IN LG+ DD Y + +D +G +D I + R +V E +GL
Sbjct: 69 AQGLSAINTYLGDNNADD-----YVRMVRTDLMGLVREDLIYDLGRHVDDSVHLFEEWGL 123
Query: 145 PFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFV- 203
P ++ + G +LD G QA + A + R G + + Q M + + V
Sbjct: 124 P--------VWIKDEHGHNLD---GAQA-KAAGKSLRNGDKPVRSGRWQIMINGESYKVI 171
Query: 204 ----------------EYFALDLIM--NSDGTCQGVIALNMEDGTLHRFRAASTILATG- 244
F + L++ N+ G + N+ +H F+A + ++A G
Sbjct: 172 VAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGG 231
Query: 245 ------------GYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPT------G 286
G GRA++ +A G M ++ G + +E +F P G
Sbjct: 232 AVNVYRPRSVGEGMGRAWYPVWNA----GSTYTMCAQVGAEMTMME-NRFVPARFKDGYG 286
Query: 287 IYGAGCLLLKVGS---RGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGR 343
GA LL K + +GE N + E + + + M E+REGR
Sbjct: 287 PVGAWFLLFKAKATNCKGEDYCATNRAMLKPYEERGYAKGHVIPTCLRNHMMLREMREGR 346
Query: 344 GVGPLKDHIYLHLN----------HLPPDVLKERLPGISETAAIFAGVDVTKEP--IPVL 391
G + L + HL + ++ L A ++A + E ++
Sbjct: 347 GPIYMDTKTALQTSFATMSPAQQKHLEAEAWEDFLDMCVGQANLWAATNCAPEERGSEIM 406
Query: 392 PTVHYNMGGIPTNHHGEVVTIKGDDPDE 419
PT Y +G H I PDE
Sbjct: 407 PTEPYLLGS-----HSGCCGIWASGPDE 429
>pdb|4HZ5|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|C Chain C, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|D Chain D, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|E Chain E, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|F Chain F, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|G Chain G, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|H Chain H, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
pdb|4HZ5|J Chain J, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 216
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 270 AGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNS-----------EGERFMERY 318
+G+P ++ F H G +G G G G G + N+ +G +MER+
Sbjct: 71 SGIPTVEVIFTVLHAGGKFGQGGYKTSGGLHGVGASVVNALSKWLEVHIVRDGVEYMERF 130
Query: 319 APTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIF 378
K + + + ++ R G V L D + ++L ERL E+A +
Sbjct: 131 EDGGKPVGTLKKIGKTKK---RNGTSVTFLPDDTIFSTTNFSYEILAERL---RESAFLL 184
Query: 379 AGVDVT 384
GV +T
Sbjct: 185 KGVKIT 190
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 84 SHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
+HT++ GG G + D W + T++G W G Y P A+ LE
Sbjct: 318 AHTLSPSGGFGMNTGIGSAADLGWKLAATLRG--WAGPGLLATYEEERRPVAITSLEEAN 375
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACA 178
+ RT D R D G G+ R A A
Sbjct: 376 VNLRRTMD-----RELPPGLHDDGPRGERIRAAVA 405
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 84 SHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYG 143
+HT++ GG G + D W + T++G W G Y P A+ LE
Sbjct: 318 AHTLSPSGGFGMNTGIGSAADLGWKLAATLRG--WAGPGLLATYEEERRPVAITSLEEAN 375
Query: 144 LPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACA 178
+ RT D R D G G+ R A A
Sbjct: 376 VNLRRTMD-----RELPPGLHDDGPRGERIRAAVA 405
>pdb|3KAS|B Chain B, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
Length = 162
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 99 NMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQR 157
N ++ W H + G DWL D +CR K E N S+ +D ++Y +
Sbjct: 55 NKSDSSWAIHWFSNALGHDWLMDP---PMLCRNKTKK--EGSNIQFNISKADDARVYGK 108
>pdb|3SZQ|A Chain A, Structure Of An S. Pombe AptxDNAAMPZN COMPLEX
Length = 206
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 322 AKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLH---LNHLPPDVLKERLPGISETAAIF 378
A++ S+ + + ++ I+ G GP ++++LH L+H+ P LK IS T+ F
Sbjct: 90 ARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPS-LKNSAHYISFTSPFF 148
Query: 379 AGVDVTKEPIPVLPTV 394
+D +P T+
Sbjct: 149 VKIDTPTSNLPTRGTL 164
>pdb|3SP4|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
pdb|3SP4|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
Length = 204
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 322 AKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLH---LNHLPPDVLKERLPGISETAAIF 378
A++ S+ + + ++ I+ G GP ++++LH L+H+ P LK IS T+ F
Sbjct: 88 ARNCLSQQLTNEALCNYIKVGFHAGPSMNNLHLHIMTLDHVSPS-LKNSAHYISFTSPFF 146
Query: 379 AGVDVTKEPIPVLPTV 394
+D +P T+
Sbjct: 147 VKIDTPTSNLPTRGTL 162
>pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
Length = 204
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 322 AKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLH---LNHLPPDVLKERLPGISETAAIF 378
A++ S+ + + ++ I+ G GP ++++LH L+H+ P LK IS T+ F
Sbjct: 88 ARNCLSQQLTNEALANYIKVGFHAGPSMNNLHLHIMTLDHVSPS-LKNSAHYISFTSPFF 146
Query: 379 AGVDVTKEPIP 389
+D +P
Sbjct: 147 VKIDTPTSNLP 157
>pdb|1VGT|A Chain A, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGT|B Chain B, Crystal Structure Of
4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase
pdb|1VGU|A Chain A, Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D-
Erythritol Synthase
pdb|1VGU|B Chain B, Crystal Structure Of 4-Diphosphocytidyl-2c-Methyl-D-
Erythritol Synthase
Length = 238
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 401 IPTNHHGEVVTIKGDD--PDEVVPGLMAAGEAACASVHGANR 440
+P +H ++ + G D D V+ GL AAG+A VH A R
Sbjct: 70 LPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAAR 111
>pdb|1I52|A Chain A, Crystal Structure Of
4-Diphosphocytidyl-2-C-Methylerythritol (Cdp-Me)
Synthase (Ygbp) Involved In Mevalonate Independent
Isoprenoid Biosynthesis
pdb|1INJ|A Chain A, Crystal Structure Of The Apo Form Of
4-Diphosphocytidyl-2-C- Methylerythritol (Cdp-Me)
Synthetase (Ygbp) Involved In Mevalonate Independent
Isoprenoid Biosynthesis
pdb|1INI|A Chain A, Crystal Structure Of
4-diphosphocytidyl-2-c-methylerythritol (cdp-me)
Synthetase (ygbp) Involved In Mevalonate Independent
Isoprenoid Biosynthesis, Complexed With Cdp-me And Mg2+
Length = 236
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 401 IPTNHHGEVVTIKGDD--PDEVVPGLMAAGEAACASVHGANR 440
+P +H ++ + G D D V+ GL AAG+A VH A R
Sbjct: 68 LPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAAR 109
>pdb|3N9W|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase (Ispd) In Complex With
1,2-Propanediol
pdb|3N9W|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase (Ispd) In Complex With
1,2-Propanediol
Length = 235
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 401 IPTNHHGEVVTIKGDD--PDEVVPGLMAAGEAACASVHGANR 440
+P +H ++ + G D D V+ GL AAG+A VH A R
Sbjct: 67 LPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAAR 108
>pdb|1H3M|A Chain A, Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol
Synthetase
pdb|1H3M|B Chain B, Structure Of 4-Diphosphocytidyl-2c-Methyl-D-Erythritol
Synthetase
Length = 235
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 401 IPTNHHGEVVTIKGDD--PDEVVPGLMAAGEAACASVHGANR 440
+P +H ++ + G D D V+ GL AAG+A VH A R
Sbjct: 67 LPLANHPQITVVDGGDERADSVLTGLKAAGDAQWVLVHDAAR 108
>pdb|2V7T|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7T|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7T|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosyl-L-Homocysteine And Chloride Ion
pdb|2V7U|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7U|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7U|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
S-Adenosylmethionine And Chloride Ion
pdb|2V7W|A Chain A, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
pdb|2V7W|B Chain B, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
pdb|2V7W|C Chain C, X-Ray Crystal Structure Of 5'-Fluorodeoxyadenosine
Synthase S158g Mutant Complexed With
5'-Fluorodeoxyadenosin
Length = 299
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 246 YGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGS 299
YGR + SAH G +S G PLED E V+F+ + G L+ V S
Sbjct: 157 YGREMVAIPSAHLAAG---FPLSEVGRPLEDHEIVRFNRPAVEQDGEALVGVVS 207
>pdb|2WFO|A Chain A, Crystal Structure Of Machupo Virus Envelope Glycoprotein
Gp1
Length = 182
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 99 NMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQR 157
N ++ W H + G DWL D +CR K E N S+ ++ ++Y +
Sbjct: 51 NKSDSSWAIHWFSIALGHDWLMDP---PMLCRNKTKK--EGSNIQFNISKADESRVYGK 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,385,327
Number of Sequences: 62578
Number of extensions: 809900
Number of successful extensions: 1674
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1485
Number of HSP's gapped (non-prelim): 53
length of query: 633
length of database: 14,973,337
effective HSP length: 105
effective length of query: 528
effective length of database: 8,402,647
effective search space: 4436597616
effective search space used: 4436597616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)