Query 046556
Match_columns 633
No_of_seqs 329 out of 3459
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 13:18:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00128 Succinate dehydrogena 100.0 4E-107 8E-112 904.9 65.8 632 1-633 1-635 (635)
2 PTZ00139 Succinate dehydrogena 100.0 3E-103 6E-108 874.3 64.4 592 41-633 23-617 (617)
3 PRK09078 sdhA succinate dehydr 100.0 4E-102 9E-107 864.4 65.3 592 41-633 6-598 (598)
4 PRK08958 sdhA succinate dehydr 100.0 4E-100 8E-105 846.0 60.7 582 46-633 6-588 (588)
5 PRK08626 fumarate reductase fl 100.0 1.8E-99 4E-104 847.4 60.7 572 45-633 3-598 (657)
6 PRK06452 sdhA succinate dehydr 100.0 1.7E-98 4E-103 831.1 59.6 559 46-633 4-566 (566)
7 PRK08205 sdhA succinate dehydr 100.0 1.4E-97 3E-102 827.5 61.1 574 45-633 3-583 (583)
8 PRK07057 sdhA succinate dehydr 100.0 2.8E-97 6E-102 824.5 61.4 582 45-633 10-591 (591)
9 COG0029 NadB Aspartate oxidase 100.0 2E-98 4E-103 765.3 45.2 499 49-604 9-513 (518)
10 PRK05945 sdhA succinate dehydr 100.0 5.9E-97 1E-101 822.2 60.6 566 46-633 2-575 (575)
11 TIGR01176 fum_red_Fp fumarate 100.0 9.7E-97 2E-101 816.4 59.6 559 46-633 2-579 (580)
12 PRK08641 sdhA succinate dehydr 100.0 3.8E-96 8E-101 815.1 61.5 559 47-633 3-579 (589)
13 TIGR01811 sdhA_Bsu succinate d 100.0 1.1E-95 2E-100 811.6 59.5 557 50-633 1-603 (603)
14 PRK06069 sdhA succinate dehydr 100.0 1.9E-95 4E-100 811.3 59.8 568 44-633 2-577 (577)
15 PRK09231 fumarate reductase fl 100.0 2E-95 4E-100 808.2 59.9 559 46-633 3-580 (582)
16 PRK05675 sdhA succinate dehydr 100.0 1.4E-95 3E-100 807.6 58.1 569 60-633 1-570 (570)
17 PRK07573 sdhA succinate dehydr 100.0 2.2E-95 5E-100 813.3 60.0 560 46-633 34-639 (640)
18 TIGR01816 sdhA_forward succina 100.0 4.8E-94 1E-98 795.5 60.0 563 66-633 1-565 (565)
19 KOG2403 Succinate dehydrogenas 100.0 2.4E-97 5E-102 757.0 28.9 591 41-633 49-642 (642)
20 COG1053 SdhA Succinate dehydro 100.0 1.5E-94 3.2E-99 784.5 46.3 553 43-616 2-561 (562)
21 TIGR01812 sdhA_frdA_Gneg succi 100.0 2.1E-92 4.5E-97 788.0 61.2 562 49-633 1-566 (566)
22 PRK07803 sdhA succinate dehydr 100.0 5.7E-92 1.2E-96 786.0 59.7 549 45-617 6-602 (626)
23 PLN02815 L-aspartate oxidase 100.0 1.7E-91 3.6E-96 772.5 53.8 528 45-603 27-571 (594)
24 PRK06263 sdhA succinate dehydr 100.0 1.8E-89 4E-94 758.6 58.8 525 45-603 5-535 (543)
25 PRK07395 L-aspartate oxidase; 100.0 2.3E-89 4.9E-94 753.6 54.7 522 44-601 6-545 (553)
26 PRK07804 L-aspartate oxidase; 100.0 4.2E-86 9.1E-91 729.2 56.4 511 43-609 12-533 (541)
27 PRK09077 L-aspartate oxidase; 100.0 1.3E-85 2.7E-90 725.4 55.6 513 45-600 6-531 (536)
28 PRK08071 L-aspartate oxidase; 100.0 1.7E-83 3.7E-88 703.6 52.6 503 46-608 2-508 (510)
29 PRK07512 L-aspartate oxidase; 100.0 1.1E-83 2.4E-88 705.6 50.5 484 44-599 6-495 (513)
30 TIGR00551 nadB L-aspartate oxi 100.0 2.2E-81 4.8E-86 686.0 52.9 484 46-587 1-488 (488)
31 PRK13800 putative oxidoreducta 100.0 1.8E-81 4E-86 728.5 54.1 538 43-633 9-577 (897)
32 TIGR02061 aprA adenosine phosp 100.0 2.3E-81 5E-86 691.2 52.0 521 49-615 1-611 (614)
33 PRK08275 putative oxidoreducta 100.0 4.3E-80 9.2E-85 684.8 54.1 520 44-615 6-552 (554)
34 PRK06854 adenylylsulfate reduc 100.0 5.2E-80 1.1E-84 687.5 53.6 527 43-615 7-601 (608)
35 PRK08401 L-aspartate oxidase; 100.0 5.6E-76 1.2E-80 639.1 48.5 455 48-598 2-458 (466)
36 PRK06175 L-aspartate oxidase; 100.0 9E-62 1.9E-66 522.1 43.6 423 46-526 3-431 (433)
37 PRK06481 fumarate reductase fl 100.0 2.8E-51 6E-56 449.7 38.9 395 39-465 53-504 (506)
38 TIGR01813 flavo_cyto_c flavocy 100.0 2.4E-47 5.1E-52 414.3 35.1 379 49-458 1-439 (439)
39 PF00890 FAD_binding_2: FAD bi 100.0 3.9E-47 8.4E-52 410.5 33.1 372 49-446 1-417 (417)
40 KOG2404 Fumarate reductase, fl 100.0 2.2E-48 4.8E-53 373.1 20.6 374 49-460 11-467 (477)
41 PTZ00306 NADH-dependent fumara 100.0 7.6E-47 1.7E-51 447.8 37.8 398 45-468 407-906 (1167)
42 PRK07121 hypothetical protein; 100.0 1.4E-45 3.1E-50 404.9 39.3 395 43-463 16-490 (492)
43 PRK08274 tricarballylate dehyd 100.0 2.2E-45 4.7E-50 401.7 36.6 391 45-466 2-463 (466)
44 PRK12837 3-ketosteroid-delta-1 100.0 2.9E-45 6.2E-50 402.9 36.7 400 43-462 3-510 (513)
45 PRK12845 3-ketosteroid-delta-1 100.0 4.8E-45 1E-49 402.5 37.4 400 42-462 11-563 (564)
46 PRK12844 3-ketosteroid-delta-1 100.0 6.9E-45 1.5E-49 402.5 36.4 412 44-466 3-552 (557)
47 PRK12835 3-ketosteroid-delta-1 100.0 9.7E-44 2.1E-48 394.6 38.5 415 42-466 6-572 (584)
48 PRK12834 putative FAD-binding 100.0 5E-44 1.1E-48 396.6 35.1 403 45-462 2-548 (549)
49 TIGR02485 CobZ_N-term precorri 100.0 1.2E-42 2.6E-47 376.1 35.2 382 52-464 1-430 (432)
50 PRK12839 hypothetical protein; 100.0 3E-41 6.6E-46 373.3 36.3 410 44-463 5-567 (572)
51 PRK07843 3-ketosteroid-delta-1 100.0 2E-41 4.3E-46 375.4 32.9 408 43-462 3-555 (557)
52 PRK12843 putative FAD-binding 100.0 1.3E-40 2.8E-45 370.4 38.4 416 40-466 9-574 (578)
53 PRK12842 putative succinate de 100.0 3E-39 6.5E-44 360.0 39.9 412 44-466 6-569 (574)
54 PRK06134 putative FAD-binding 100.0 2.2E-38 4.7E-43 352.8 40.8 412 43-465 8-572 (581)
55 PF02910 Succ_DH_flav_C: Fumar 100.0 4.2E-32 9.1E-37 240.8 12.2 128 501-633 1-129 (129)
56 COG2081 Predicted flavoprotein 100.0 1.3E-27 2.7E-32 240.8 27.9 356 46-464 2-407 (408)
57 PF03486 HI0933_like: HI0933-l 99.9 2.1E-26 4.6E-31 243.1 18.8 348 48-459 1-409 (409)
58 COG3573 Predicted oxidoreducta 99.9 1.7E-25 3.7E-30 216.8 20.6 405 46-462 4-550 (552)
59 TIGR00275 flavoprotein, HI0933 99.9 2.8E-22 6.1E-27 214.1 30.5 346 51-458 1-400 (400)
60 TIGR03862 flavo_PP4765 unchara 99.7 1.2E-15 2.7E-20 158.7 29.1 327 70-464 1-375 (376)
61 COG1249 Lpd Pyruvate/2-oxoglut 99.7 6.7E-17 1.5E-21 172.2 13.8 36 45-80 2-37 (454)
62 PRK04176 ribulose-1,5-biphosph 99.6 1.5E-14 3.3E-19 144.4 16.1 144 46-247 24-173 (257)
63 TIGR01421 gluta_reduc_1 glutat 99.6 6.4E-15 1.4E-19 160.1 13.6 34 46-79 1-34 (450)
64 TIGR01424 gluta_reduc_2 glutat 99.6 1.5E-14 3.2E-19 157.4 12.5 33 47-79 2-34 (446)
65 PLN02546 glutathione reductase 99.6 3.4E-14 7.3E-19 156.9 15.0 152 45-248 77-229 (558)
66 PTZ00058 glutathione reductase 99.6 1.6E-14 3.4E-19 159.5 11.7 48 44-93 45-92 (561)
67 KOG4716 Thioredoxin reductase 99.5 1.7E-13 3.8E-18 134.0 16.5 187 45-283 17-217 (503)
68 PRK06467 dihydrolipoamide dehy 99.5 1.5E-13 3.2E-18 150.4 18.0 36 45-80 2-37 (471)
69 KOG0405 Pyridine nucleotide-di 99.5 4.8E-14 1E-18 138.5 12.3 180 44-282 17-207 (478)
70 PLN02507 glutathione reductase 99.5 8.3E-14 1.8E-18 153.0 15.5 34 45-78 23-56 (499)
71 PRK05329 anaerobic glycerol-3- 99.5 1.3E-12 2.9E-17 138.9 23.1 61 183-247 258-318 (422)
72 PRK06116 glutathione reductase 99.5 5.1E-14 1.1E-18 153.6 12.5 34 46-79 3-36 (450)
73 TIGR00292 thiazole biosynthesi 99.5 2.7E-13 5.9E-18 135.0 16.2 144 46-247 20-170 (254)
74 TIGR01423 trypano_reduc trypan 99.5 1.3E-13 2.9E-18 150.5 13.9 34 46-79 2-36 (486)
75 TIGR01438 TGR thioredoxin and 99.5 3E-13 6.5E-18 148.0 15.8 53 47-99 2-54 (484)
76 COG1635 THI4 Ribulose 1,5-bisp 99.5 4E-13 8.7E-18 124.6 13.9 140 46-244 29-175 (262)
77 COG0492 TrxB Thioredoxin reduc 99.5 1.6E-13 3.4E-18 139.7 12.2 58 182-248 59-116 (305)
78 PRK06115 dihydrolipoamide dehy 99.5 1.2E-13 2.5E-18 151.1 12.1 33 47-79 3-35 (466)
79 PRK06370 mercuric reductase; V 99.5 1.7E-13 3.7E-18 150.0 13.1 37 44-80 2-38 (463)
80 PLN02661 Putative thiazole syn 99.5 6.2E-13 1.3E-17 135.8 16.1 143 46-247 91-244 (357)
81 PRK05192 tRNA uridine 5-carbox 99.5 1.6E-11 3.5E-16 134.1 25.2 153 46-248 3-158 (618)
82 PRK11101 glpA sn-glycerol-3-ph 99.4 1.4E-12 3E-17 145.0 16.5 191 46-247 5-211 (546)
83 TIGR03143 AhpF_homolog putativ 99.4 7.3E-13 1.6E-17 147.6 13.2 35 46-80 3-37 (555)
84 PTZ00052 thioredoxin reductase 99.4 8.8E-13 1.9E-17 145.0 13.4 54 46-99 4-57 (499)
85 PRK06327 dihydrolipoamide dehy 99.4 2.4E-12 5.1E-17 141.2 16.7 33 46-78 3-35 (475)
86 PRK10015 oxidoreductase; Provi 99.4 4.5E-11 9.8E-16 129.1 26.3 58 184-248 108-165 (429)
87 PF01946 Thi4: Thi4 family; PD 99.4 1.2E-12 2.6E-17 122.6 11.7 142 46-245 16-163 (230)
88 TIGR00136 gidA glucose-inhibit 99.4 2E-11 4.4E-16 133.1 23.0 152 48-248 1-155 (617)
89 PRK07818 dihydrolipoamide dehy 99.4 1.4E-12 3E-17 142.9 13.7 33 47-79 4-36 (466)
90 PRK05976 dihydrolipoamide dehy 99.4 3.3E-12 7.1E-17 140.1 16.4 35 45-79 2-36 (472)
91 PTZ00153 lipoamide dehydrogena 99.4 1.2E-12 2.5E-17 146.6 12.9 47 45-91 114-160 (659)
92 PRK05249 soluble pyridine nucl 99.4 5.8E-12 1.2E-16 138.0 18.0 37 45-81 3-39 (461)
93 PRK06416 dihydrolipoamide dehy 99.4 2.7E-12 5.9E-17 140.6 15.1 35 46-80 3-37 (462)
94 PRK14694 putative mercuric red 99.4 4.4E-12 9.4E-17 138.9 16.6 37 44-80 3-39 (468)
95 COG0644 FixC Dehydrogenases (f 99.4 6.9E-11 1.5E-15 126.6 25.2 151 46-247 2-152 (396)
96 PRK14727 putative mercuric red 99.4 1.2E-11 2.6E-16 135.8 17.1 38 44-81 13-50 (479)
97 TIGR03140 AhpF alkyl hydropero 99.4 6.3E-13 1.4E-17 147.0 7.0 58 183-247 266-323 (515)
98 PRK07845 flavoprotein disulfid 99.4 2.4E-11 5.2E-16 132.9 19.2 32 49-80 3-34 (466)
99 PRK07846 mycothione reductase; 99.4 7.8E-12 1.7E-16 136.0 15.1 32 47-80 1-32 (451)
100 KOG0404 Thioredoxin reductase 99.3 3.7E-12 8.1E-17 117.9 9.5 120 45-248 6-125 (322)
101 PRK06292 dihydrolipoamide dehy 99.3 1.7E-12 3.7E-17 142.1 8.7 34 46-79 2-35 (460)
102 COG0578 GlpA Glycerol-3-phosph 99.3 1.6E-11 3.4E-16 131.6 15.6 199 46-249 11-227 (532)
103 PRK13748 putative mercuric red 99.3 3.8E-11 8.3E-16 134.8 19.6 34 46-79 97-130 (561)
104 PF01266 DAO: FAD dependent ox 99.3 3.7E-11 8E-16 126.7 17.7 180 49-247 1-203 (358)
105 PRK12266 glpD glycerol-3-phosp 99.3 6.3E-11 1.4E-15 130.7 18.9 64 183-248 154-217 (508)
106 PRK15317 alkyl hydroperoxide r 99.3 3.2E-12 6.9E-17 141.5 8.5 113 45-247 209-322 (517)
107 PRK08010 pyridine nucleotide-d 99.3 2.6E-11 5.7E-16 131.9 15.5 42 47-88 3-44 (441)
108 TIGR01350 lipoamide_DH dihydro 99.3 4.1E-11 8.9E-16 131.3 16.5 33 47-79 1-33 (461)
109 PRK06912 acoL dihydrolipoamide 99.3 4.2E-11 9E-16 130.9 16.4 32 49-80 2-33 (458)
110 TIGR02053 MerA mercuric reduct 99.3 7.1E-12 1.5E-16 137.3 10.3 33 48-80 1-33 (463)
111 PLN02464 glycerol-3-phosphate 99.3 3.1E-11 6.8E-16 135.8 15.6 66 183-248 231-297 (627)
112 PRK07251 pyridine nucleotide-d 99.3 1.3E-11 2.9E-16 134.1 11.8 34 47-80 3-36 (438)
113 TIGR03452 mycothione_red mycot 99.3 3.1E-11 6.8E-16 131.4 13.8 32 47-80 2-33 (452)
114 PRK13369 glycerol-3-phosphate 99.3 2.1E-11 4.6E-16 134.5 11.2 63 183-248 154-216 (502)
115 TIGR01292 TRX_reduct thioredox 99.2 5E-11 1.1E-15 122.8 11.7 33 48-80 1-33 (300)
116 PLN02697 lycopene epsilon cycl 99.2 8.6E-10 1.9E-14 120.8 21.8 58 184-248 192-249 (529)
117 COG2509 Uncharacterized FAD-de 99.2 5E-09 1.1E-13 108.0 25.6 62 183-250 172-233 (486)
118 TIGR01373 soxB sarcosine oxida 99.2 2.3E-10 5E-15 123.3 16.8 193 45-248 28-241 (407)
119 KOG1335 Dihydrolipoamide dehyd 99.2 2.6E-11 5.7E-16 121.0 8.2 145 46-246 38-184 (506)
120 TIGR01320 mal_quin_oxido malat 99.2 6.8E-10 1.5E-14 121.3 19.4 65 183-248 177-241 (483)
121 PRK12409 D-amino acid dehydrog 99.2 6.4E-10 1.4E-14 120.0 18.9 62 183-247 196-258 (410)
122 PRK12831 putative oxidoreducta 99.2 4.8E-09 1E-13 114.4 25.7 38 45-82 138-175 (464)
123 PRK10262 thioredoxin reductase 99.2 1.6E-11 3.4E-16 127.9 6.0 35 45-79 4-38 (321)
124 TIGR03329 Phn_aa_oxid putative 99.2 4.3E-10 9.4E-15 122.9 17.5 47 45-91 22-70 (460)
125 PRK10157 putative oxidoreducta 99.2 2.6E-10 5.6E-15 123.3 15.5 57 184-247 108-164 (428)
126 PRK00711 D-amino acid dehydrog 99.2 4.2E-10 9.1E-15 121.7 17.1 58 183-247 200-257 (416)
127 COG0445 GidA Flavin-dependent 99.2 4.5E-10 9.8E-15 117.8 15.6 152 46-247 3-158 (621)
128 PF12831 FAD_oxidored: FAD dep 99.2 2.6E-11 5.6E-16 131.0 5.7 147 49-245 1-148 (428)
129 COG0579 Predicted dehydrogenas 99.2 9.7E-10 2.1E-14 115.6 17.0 192 46-247 2-211 (429)
130 PF01134 GIDA: Glucose inhibit 99.2 4.1E-10 8.9E-15 117.1 13.8 150 49-248 1-153 (392)
131 PLN02463 lycopene beta cyclase 99.1 7.8E-09 1.7E-13 111.5 23.7 58 183-248 113-170 (447)
132 PF00732 GMC_oxred_N: GMC oxid 99.1 3.9E-10 8.4E-15 116.1 12.8 58 190-247 198-258 (296)
133 TIGR01316 gltA glutamate synth 99.1 2E-08 4.3E-13 109.4 26.0 38 45-82 131-168 (449)
134 PRK11728 hydroxyglutarate oxid 99.1 2E-09 4.4E-14 115.4 17.8 57 183-247 148-204 (393)
135 KOG0042 Glycerol-3-phosphate d 99.1 3.7E-11 7.9E-16 124.9 3.6 198 45-248 65-288 (680)
136 KOG2415 Electron transfer flav 99.1 3.4E-10 7.3E-15 114.1 9.6 169 43-249 72-258 (621)
137 PRK05257 malate:quinone oxidor 99.1 3.2E-09 6.9E-14 116.1 18.2 65 183-248 182-247 (494)
138 COG3634 AhpF Alkyl hydroperoxi 99.1 4.9E-10 1.1E-14 110.5 9.9 60 182-246 264-324 (520)
139 PRK06126 hypothetical protein; 99.1 4.7E-09 1E-13 117.5 19.0 62 185-248 127-189 (545)
140 TIGR01377 soxA_mon sarcosine o 99.1 9.4E-10 2E-14 117.4 12.9 185 48-248 1-201 (380)
141 PRK06185 hypothetical protein; 99.1 2.4E-09 5.3E-14 115.4 16.2 62 184-248 108-170 (407)
142 PTZ00383 malate:quinone oxidor 99.1 2.6E-09 5.6E-14 116.4 16.4 59 183-248 210-274 (497)
143 PRK01747 mnmC bifunctional tRN 99.1 4.4E-09 9.6E-14 120.1 18.3 60 183-250 407-466 (662)
144 PRK12775 putative trifunctiona 99.0 2E-08 4.4E-13 118.5 23.3 37 46-82 429-465 (1006)
145 PRK11259 solA N-methyltryptoph 99.0 3.2E-09 6.9E-14 113.2 15.0 57 184-248 149-205 (376)
146 TIGR02032 GG-red-SF geranylger 99.0 2.4E-09 5.2E-14 109.8 13.6 59 184-248 91-149 (295)
147 TIGR03364 HpnW_proposed FAD de 99.0 2.7E-09 5.9E-14 113.3 14.2 46 48-93 1-46 (365)
148 PRK09853 putative selenate red 99.0 3.5E-09 7.5E-14 122.1 15.7 36 46-81 538-573 (1019)
149 TIGR03378 glycerol3P_GlpB glyc 99.0 1.8E-08 4E-13 106.1 19.9 62 182-247 261-323 (419)
150 PF01494 FAD_binding_3: FAD bi 99.0 2.2E-09 4.8E-14 113.0 13.0 62 184-247 111-172 (356)
151 PLN02985 squalene monooxygenas 99.0 9.4E-09 2E-13 113.2 18.2 63 184-249 147-210 (514)
152 PRK13339 malate:quinone oxidor 99.0 1.4E-08 3.1E-13 110.3 19.2 65 183-248 183-248 (497)
153 PRK12779 putative bifunctional 99.0 4.2E-09 9.2E-14 123.1 16.2 35 47-81 306-340 (944)
154 PRK13512 coenzyme A disulfide 99.0 1.1E-09 2.4E-14 118.9 10.4 32 49-80 3-36 (438)
155 PRK12769 putative oxidoreducta 99.0 4.3E-08 9.4E-13 111.7 23.8 37 46-82 326-362 (654)
156 COG0665 DadA Glycine/D-amino a 99.0 5.1E-09 1.1E-13 112.0 15.1 189 46-248 3-213 (387)
157 KOG2820 FAD-dependent oxidored 99.0 3.5E-09 7.7E-14 104.6 12.0 65 184-253 153-218 (399)
158 PRK02106 choline dehydrogenase 99.0 3.3E-09 7.2E-14 118.8 13.4 51 196-248 213-263 (560)
159 PRK12778 putative bifunctional 99.0 8.1E-08 1.8E-12 111.3 25.1 36 46-81 430-465 (752)
160 PF07992 Pyr_redox_2: Pyridine 99.0 3.4E-09 7.3E-14 102.3 11.5 31 49-79 1-31 (201)
161 PRK08773 2-octaprenyl-3-methyl 99.0 1.3E-08 2.8E-13 109.2 16.6 58 184-248 113-170 (392)
162 PRK07364 2-octaprenyl-6-methox 99.0 1E-08 2.3E-13 110.8 16.0 61 184-248 121-182 (415)
163 PRK12810 gltD glutamate syntha 98.9 2.6E-07 5.7E-12 101.3 26.1 37 46-82 142-178 (471)
164 PRK09754 phenylpropionate diox 98.9 3.5E-08 7.5E-13 105.9 18.2 33 47-79 3-37 (396)
165 PRK09564 coenzyme A disulfide 98.9 3.1E-09 6.7E-14 115.9 10.2 32 49-80 2-35 (444)
166 PLN00093 geranylgeranyl diphos 98.9 2.3E-08 5E-13 108.4 16.6 38 43-80 35-72 (450)
167 COG0654 UbiH 2-polyprenyl-6-me 98.9 1.6E-08 3.4E-13 108.2 15.1 59 184-248 104-163 (387)
168 TIGR03315 Se_ygfK putative sel 98.9 2.5E-08 5.4E-13 115.7 17.1 36 46-81 536-571 (1012)
169 PRK08243 4-hydroxybenzoate 3-m 98.9 3.8E-08 8.2E-13 105.6 17.2 62 184-248 103-164 (392)
170 PRK05335 tRNA (uracil-5-)-meth 98.9 2E-07 4.2E-12 98.2 21.6 34 48-81 3-36 (436)
171 PRK06834 hypothetical protein; 98.9 2.2E-08 4.7E-13 110.0 14.9 58 184-248 100-157 (488)
172 PRK05714 2-octaprenyl-3-methyl 98.9 2.3E-08 5.1E-13 107.7 15.0 58 184-248 112-169 (405)
173 TIGR01988 Ubi-OHases Ubiquinon 98.9 3E-08 6.5E-13 106.0 15.7 58 184-248 106-164 (385)
174 PRK13977 myosin-cross-reactive 98.9 8.8E-08 1.9E-12 104.2 19.1 66 184-249 226-295 (576)
175 PRK08244 hypothetical protein; 98.9 3.7E-08 8E-13 108.9 16.5 60 185-248 101-160 (493)
176 PRK07608 ubiquinone biosynthes 98.9 5.3E-08 1.2E-12 104.2 17.0 57 184-248 111-168 (388)
177 PRK07045 putative monooxygenas 98.9 3.5E-08 7.5E-13 105.7 15.5 60 184-248 106-166 (388)
178 PRK06184 hypothetical protein; 98.9 4.4E-08 9.6E-13 108.5 16.8 60 185-248 110-169 (502)
179 PRK06183 mhpA 3-(3-hydroxyphen 98.9 6.1E-08 1.3E-12 108.3 17.3 61 185-248 114-175 (538)
180 TIGR02028 ChlP geranylgeranyl 98.8 4.8E-08 1E-12 104.7 15.3 64 184-248 93-161 (398)
181 PRK09126 hypothetical protein; 98.8 6E-08 1.3E-12 104.0 16.0 35 47-81 3-37 (392)
182 PRK08020 ubiF 2-octaprenyl-3-m 98.8 6.3E-08 1.4E-12 103.8 16.1 58 184-248 112-170 (391)
183 KOG1298 Squalene monooxygenase 98.8 1.7E-08 3.7E-13 101.3 10.6 164 44-249 42-210 (509)
184 PRK04965 NADH:flavorubredoxin 98.8 7.8E-09 1.7E-13 110.2 8.8 32 48-79 3-36 (377)
185 PRK07333 2-octaprenyl-6-methox 98.8 5.1E-08 1.1E-12 105.0 15.2 58 184-248 111-168 (403)
186 TIGR02023 BchP-ChlP geranylger 98.8 7.7E-08 1.7E-12 103.0 16.4 62 184-248 92-156 (388)
187 PRK12809 putative oxidoreducta 98.8 5.2E-07 1.1E-11 102.6 23.7 37 46-82 309-345 (639)
188 PRK07190 hypothetical protein; 98.8 4.8E-08 1E-12 107.2 14.9 56 185-247 110-165 (487)
189 PRK11445 putative oxidoreducta 98.8 7.3E-08 1.6E-12 101.6 15.5 60 184-248 99-158 (351)
190 PRK06847 hypothetical protein; 98.8 1.1E-07 2.4E-12 101.3 16.9 60 183-249 106-165 (375)
191 PLN02172 flavin-containing mon 98.8 8.7E-08 1.9E-12 104.1 16.2 62 183-247 110-173 (461)
192 PRK13984 putative oxidoreducta 98.8 5.2E-07 1.1E-11 102.2 23.2 38 46-83 282-319 (604)
193 PRK14989 nitrite reductase sub 98.8 1.4E-08 3.1E-13 117.5 10.5 32 49-80 5-40 (847)
194 KOG2844 Dimethylglycine dehydr 98.8 8.7E-08 1.9E-12 102.5 15.1 59 183-248 186-244 (856)
195 PLN02785 Protein HOTHEAD 98.8 1.3E-08 2.8E-13 113.5 9.5 58 190-248 226-291 (587)
196 PRK11749 dihydropyrimidine deh 98.8 9.5E-09 2.1E-13 112.3 8.3 36 46-81 139-174 (457)
197 TIGR01810 betA choline dehydro 98.8 1.4E-07 2.9E-12 105.3 17.6 54 192-247 201-255 (532)
198 TIGR02360 pbenz_hydroxyl 4-hyd 98.8 9.5E-08 2E-12 102.3 15.5 62 184-248 103-164 (390)
199 PRK08163 salicylate hydroxylas 98.8 1.1E-07 2.5E-12 102.0 15.7 59 184-249 109-168 (396)
200 COG3075 GlpB Anaerobic glycero 98.8 2.5E-07 5.5E-12 91.3 16.4 60 183-246 257-316 (421)
201 PRK06617 2-octaprenyl-6-methox 98.8 9.9E-08 2.1E-12 101.6 14.9 58 184-249 104-162 (374)
202 TIGR01318 gltD_gamma_fam gluta 98.8 1.4E-06 3.1E-11 95.2 24.2 37 46-82 140-176 (467)
203 TIGR02730 carot_isom carotene 98.8 4.5E-07 9.7E-12 100.2 20.0 58 184-247 229-286 (493)
204 TIGR01984 UbiH 2-polyprenyl-6- 98.8 9.6E-08 2.1E-12 102.1 14.3 57 184-247 105-162 (382)
205 PRK08849 2-octaprenyl-3-methyl 98.7 1.8E-07 4E-12 99.9 15.9 34 47-80 3-36 (384)
206 PTZ00318 NADH dehydrogenase-li 98.7 1.4E-06 3E-11 94.3 22.6 33 47-79 10-42 (424)
207 TIGR02462 pyranose_ox pyranose 98.7 1.2E-07 2.7E-12 103.8 14.2 53 196-248 226-280 (544)
208 PF13738 Pyr_redox_3: Pyridine 98.7 3.2E-08 7E-13 95.7 8.7 60 182-248 80-139 (203)
209 PRK07494 2-octaprenyl-6-methox 98.7 1.6E-07 3.5E-12 100.5 14.9 37 45-81 5-41 (388)
210 KOG4254 Phytoene desaturase [C 98.7 4.5E-07 9.8E-12 93.1 16.9 58 184-247 264-321 (561)
211 PRK08013 oxidoreductase; Provi 98.7 2.4E-07 5.2E-12 99.6 15.9 58 184-248 111-169 (400)
212 COG1233 Phytoene dehydrogenase 98.7 1.9E-07 4.2E-12 102.5 14.3 56 184-245 224-279 (487)
213 PRK12814 putative NADPH-depend 98.7 1.8E-07 3.9E-12 106.4 14.3 36 46-81 192-227 (652)
214 PRK12770 putative glutamate sy 98.7 7.6E-08 1.7E-12 101.5 10.6 36 46-81 17-52 (352)
215 KOG2853 Possible oxidoreductas 98.7 2.5E-07 5.3E-12 91.6 13.2 55 44-98 83-142 (509)
216 TIGR03169 Nterm_to_SelD pyridi 98.7 2.2E-06 4.7E-11 91.0 21.7 56 399-467 258-313 (364)
217 PRK09897 hypothetical protein; 98.7 6.8E-07 1.5E-11 98.1 17.9 38 48-85 2-41 (534)
218 TIGR01790 carotene-cycl lycope 98.7 1.7E-07 3.8E-12 100.3 13.1 58 183-247 84-141 (388)
219 TIGR02374 nitri_red_nirB nitri 98.7 9.5E-08 2.1E-12 110.8 11.7 46 194-248 64-109 (785)
220 PRK07538 hypothetical protein; 98.7 3.6E-07 7.8E-12 98.7 15.4 63 184-248 102-166 (413)
221 PRK07236 hypothetical protein; 98.7 5.6E-07 1.2E-11 96.3 16.4 34 47-80 6-39 (386)
222 PRK08132 FAD-dependent oxidore 98.6 5.6E-07 1.2E-11 100.8 16.5 36 45-80 21-56 (547)
223 PRK05732 2-octaprenyl-6-methox 98.6 6E-07 1.3E-11 96.4 15.8 34 46-79 2-38 (395)
224 TIGR01989 COQ6 Ubiquinone bios 98.6 5.9E-07 1.3E-11 97.7 15.7 61 184-249 117-185 (437)
225 PRK07208 hypothetical protein; 98.6 1.4E-06 3.1E-11 96.0 18.8 62 184-246 218-279 (479)
226 PRK08850 2-octaprenyl-6-methox 98.6 6E-07 1.3E-11 96.7 15.5 58 184-248 111-169 (405)
227 PTZ00367 squalene epoxidase; P 98.6 7.9E-07 1.7E-11 98.7 16.5 36 45-80 31-66 (567)
228 PLN02927 antheraxanthin epoxid 98.6 1.2E-06 2.5E-11 98.1 17.9 36 45-80 79-114 (668)
229 PRK12771 putative glutamate sy 98.6 2.5E-06 5.4E-11 95.8 20.7 36 47-82 137-172 (564)
230 PRK07588 hypothetical protein; 98.6 9.8E-07 2.1E-11 94.6 15.7 32 49-80 2-33 (391)
231 PF05834 Lycopene_cycl: Lycope 98.6 4.7E-06 1E-10 88.6 20.4 33 49-81 1-35 (374)
232 TIGR01317 GOGAT_sm_gam glutama 98.6 2.1E-06 4.5E-11 94.3 17.6 34 47-80 143-176 (485)
233 TIGR01372 soxA sarcosine oxida 98.6 8.1E-07 1.8E-11 105.6 15.3 37 45-81 161-197 (985)
234 PRK06996 hypothetical protein; 98.6 1.2E-06 2.5E-11 94.2 15.2 59 184-246 115-173 (398)
235 PTZ00363 rab-GDP dissociation 98.6 1.5E-06 3.4E-11 93.5 16.0 56 184-244 232-287 (443)
236 PRK08294 phenol 2-monooxygenas 98.5 2.3E-06 4.9E-11 96.9 17.9 65 185-249 142-212 (634)
237 COG2072 TrkA Predicted flavopr 98.5 1.8E-06 3.9E-11 93.4 16.2 39 44-82 5-44 (443)
238 COG2303 BetA Choline dehydroge 98.5 1.2E-06 2.6E-11 97.3 15.1 54 194-248 213-267 (542)
239 TIGR02733 desat_CrtD C-3',4' d 98.5 7.1E-06 1.5E-10 90.8 20.7 63 183-246 231-293 (492)
240 TIGR02731 phytoene_desat phyto 98.5 3.5E-06 7.6E-11 92.2 18.0 62 184-245 213-274 (453)
241 PRK05868 hypothetical protein; 98.5 2.4E-06 5.2E-11 90.8 16.0 33 49-81 3-35 (372)
242 TIGR02734 crtI_fam phytoene de 98.5 3.3E-06 7.2E-11 93.6 17.4 57 183-245 218-274 (502)
243 PF06039 Mqo: Malate:quinone o 98.5 1.3E-05 2.7E-10 84.1 18.9 63 184-247 181-244 (488)
244 KOG1336 Monodehydroascorbate/f 98.4 8.2E-07 1.8E-11 92.5 10.0 71 380-461 310-381 (478)
245 KOG2311 NAD/FAD-utilizing prot 98.4 3.5E-07 7.7E-12 94.3 7.0 37 45-81 26-62 (679)
246 PF04820 Trp_halogenase: Trypt 98.4 1.9E-06 4E-11 93.7 12.6 59 184-248 154-212 (454)
247 PRK06475 salicylate hydroxylas 98.4 7.4E-06 1.6E-10 88.1 16.4 62 184-249 107-169 (400)
248 PRK06753 hypothetical protein; 98.4 2.3E-06 4.9E-11 91.2 12.2 33 49-81 2-34 (373)
249 PRK07233 hypothetical protein; 98.4 3.4E-06 7.4E-11 91.7 13.3 55 184-245 198-252 (434)
250 PLN02612 phytoene desaturase 98.4 1.8E-05 3.8E-10 88.7 18.8 57 184-245 308-364 (567)
251 TIGR03219 salicylate_mono sali 98.3 8E-06 1.7E-10 88.3 14.1 33 49-81 2-35 (414)
252 TIGR03377 glycerol3P_GlpA glyc 98.3 5.1E-06 1.1E-10 92.3 12.7 65 183-248 127-191 (516)
253 KOG2852 Possible oxidoreductas 98.3 4.2E-06 9.2E-11 81.3 10.3 180 48-253 11-214 (380)
254 KOG2960 Protein involved in th 98.3 2.1E-06 4.5E-11 79.6 7.3 140 47-244 76-231 (328)
255 PF13454 NAD_binding_9: FAD-NA 98.2 6.2E-06 1.4E-10 76.1 10.0 31 51-81 1-36 (156)
256 KOG1238 Glucose dehydrogenase/ 98.2 6.1E-06 1.3E-10 89.5 11.1 52 196-248 266-319 (623)
257 TIGR02732 zeta_caro_desat caro 98.2 3.1E-05 6.7E-10 84.9 16.6 63 183-247 218-284 (474)
258 PF13450 NAD_binding_8: NAD(P) 98.2 2E-06 4.2E-11 67.1 4.5 36 52-87 1-36 (68)
259 KOG2614 Kynurenine 3-monooxyge 98.2 1.1E-05 2.4E-10 82.9 10.5 39 47-85 2-40 (420)
260 PF00743 FMO-like: Flavin-bind 98.2 1.3E-05 2.8E-10 88.5 11.7 68 183-250 83-153 (531)
261 PLN02487 zeta-carotene desatur 98.1 9.3E-05 2E-09 82.3 16.8 65 181-247 292-360 (569)
262 KOG1399 Flavin-containing mono 98.1 6.3E-05 1.4E-09 80.7 14.5 36 47-82 6-41 (448)
263 PF00070 Pyr_redox: Pyridine n 98.1 7.2E-05 1.6E-09 60.4 11.4 31 50-80 2-32 (80)
264 COG1252 Ndh NADH dehydrogenase 98.0 4.2E-05 9.1E-10 80.4 11.5 32 48-79 4-37 (405)
265 KOG2665 Predicted FAD-dependen 98.0 3.2E-05 7E-10 76.2 9.0 38 45-82 46-85 (453)
266 TIGR02352 thiamin_ThiO glycine 97.9 9E-05 1.9E-09 77.5 12.8 61 183-250 136-196 (337)
267 TIGR01789 lycopene_cycl lycope 97.9 4.4E-05 9.6E-10 80.9 10.0 34 49-82 1-36 (370)
268 TIGR03197 MnmC_Cterm tRNA U-34 97.9 0.00018 3.9E-09 76.8 14.7 61 182-250 133-193 (381)
269 PRK08255 salicylyl-CoA 5-hydro 97.8 7.2E-05 1.6E-09 86.8 10.7 33 49-81 2-36 (765)
270 PRK05976 dihydrolipoamide dehy 97.7 0.0004 8.6E-09 76.4 14.0 32 48-79 181-212 (472)
271 PF13434 K_oxygenase: L-lysine 97.7 0.00023 5E-09 74.4 10.6 63 184-247 95-159 (341)
272 TIGR01350 lipoamide_DH dihydro 97.7 0.0006 1.3E-08 74.8 14.1 32 48-79 171-202 (461)
273 COG3380 Predicted NAD/FAD-depe 97.6 5.6E-05 1.2E-09 73.3 4.8 32 49-80 3-34 (331)
274 TIGR00031 UDP-GALP_mutase UDP- 97.6 5.8E-05 1.3E-09 79.5 5.2 39 48-86 2-40 (377)
275 KOG0029 Amine oxidase [Seconda 97.6 7.7E-05 1.7E-09 81.4 5.5 40 45-84 13-52 (501)
276 PLN02576 protoporphyrinogen ox 97.6 8.4E-05 1.8E-09 82.4 5.4 40 46-85 11-51 (496)
277 COG1148 HdrA Heterodisulfide r 97.5 0.00011 2.3E-09 76.7 4.8 41 45-85 122-162 (622)
278 PRK06416 dihydrolipoamide dehy 97.5 0.0016 3.5E-08 71.4 14.4 31 49-79 174-204 (462)
279 COG1251 NirB NAD(P)H-nitrite r 97.5 0.001 2.2E-08 73.3 12.3 48 194-250 69-116 (793)
280 KOG1346 Programmed cell death 97.5 0.00012 2.5E-09 74.8 4.7 46 419-466 475-522 (659)
281 PRK06115 dihydrolipoamide dehy 97.5 0.0018 3.8E-08 71.1 14.4 32 48-79 175-206 (466)
282 PRK07818 dihydrolipoamide dehy 97.5 0.0018 3.8E-08 71.2 14.3 31 49-79 174-204 (466)
283 PRK06912 acoL dihydrolipoamide 97.5 0.0018 4E-08 70.9 14.4 32 48-79 171-202 (458)
284 PLN02268 probable polyamine ox 97.5 0.00012 2.7E-09 79.5 5.2 38 49-86 2-39 (435)
285 PRK11883 protoporphyrinogen ox 97.5 0.00012 2.7E-09 79.9 5.0 36 49-84 2-39 (451)
286 PRK06327 dihydrolipoamide dehy 97.4 0.0021 4.5E-08 70.8 14.5 56 189-247 229-284 (475)
287 TIGR03140 AhpF alkyl hydropero 97.4 0.0012 2.5E-08 73.5 12.5 48 197-245 401-448 (515)
288 TIGR00562 proto_IX_ox protopor 97.4 0.00015 3.2E-09 79.6 5.2 38 48-85 3-44 (462)
289 KOG2403 Succinate dehydrogenas 97.4 0.0016 3.6E-08 69.2 12.4 236 215-465 240-475 (642)
290 PRK06370 mercuric reductase; V 97.4 0.0018 3.8E-08 71.1 13.4 32 48-79 172-203 (463)
291 COG0562 Glf UDP-galactopyranos 97.4 0.0002 4.3E-09 71.3 5.1 41 48-88 2-42 (374)
292 PLN02568 polyamine oxidase 97.4 0.00019 4.1E-09 79.7 5.4 41 45-85 3-48 (539)
293 TIGR01292 TRX_reduct thioredox 97.4 0.0014 3.1E-08 67.2 11.6 49 194-244 186-235 (300)
294 PRK15317 alkyl hydroperoxide r 97.4 0.0014 3.1E-08 72.9 12.0 47 197-244 400-446 (517)
295 PRK04965 NADH:flavorubredoxin 97.3 0.0025 5.4E-08 67.9 13.2 32 48-79 142-173 (377)
296 TIGR02053 MerA mercuric reduct 97.3 0.003 6.5E-08 69.3 14.0 32 48-79 167-198 (463)
297 KOG2495 NADH-dehydrogenase (ub 97.3 0.0076 1.6E-07 62.5 15.3 36 43-78 51-86 (491)
298 PRK06116 glutathione reductase 97.3 0.003 6.5E-08 69.1 13.5 32 48-79 168-199 (450)
299 PRK09754 phenylpropionate diox 97.3 0.0026 5.6E-08 68.3 12.6 32 48-79 145-176 (396)
300 COG4529 Uncharacterized protei 97.3 0.0056 1.2E-07 64.9 14.4 39 48-86 2-43 (474)
301 PRK10262 thioredoxin reductase 97.3 0.0037 8E-08 65.0 13.1 53 191-244 192-245 (321)
302 PRK05249 soluble pyridine nucl 97.2 0.0039 8.5E-08 68.4 13.7 32 48-79 176-207 (461)
303 TIGR01421 gluta_reduc_1 glutat 97.2 0.0039 8.4E-08 68.1 13.5 32 48-79 167-198 (450)
304 COG3349 Uncharacterized conser 97.2 0.00033 7.1E-09 74.7 4.9 38 49-86 2-39 (485)
305 PRK07251 pyridine nucleotide-d 97.2 0.0035 7.7E-08 68.2 13.1 31 49-79 159-189 (438)
306 COG1249 Lpd Pyruvate/2-oxoglut 97.2 0.0039 8.4E-08 67.3 12.6 32 49-80 175-206 (454)
307 COG1231 Monoamine oxidase [Ami 97.2 0.00051 1.1E-08 72.0 5.3 41 45-85 5-45 (450)
308 PRK09564 coenzyme A disulfide 97.2 0.0045 9.8E-08 67.5 13.2 32 48-79 150-181 (444)
309 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.00045 9.8E-09 73.6 4.8 33 48-80 1-33 (433)
310 COG1232 HemY Protoporphyrinoge 97.1 0.00048 1E-08 73.6 4.8 35 50-84 3-39 (444)
311 PLN02852 ferredoxin-NADP+ redu 97.1 0.00066 1.4E-08 74.0 5.9 37 46-82 25-63 (491)
312 PLN02676 polyamine oxidase 97.1 0.00055 1.2E-08 75.3 5.3 40 46-85 25-65 (487)
313 PRK14989 nitrite reductase sub 97.1 0.004 8.7E-08 72.8 12.5 54 189-247 192-245 (847)
314 PRK12416 protoporphyrinogen ox 97.1 0.00051 1.1E-08 75.4 4.8 37 49-85 3-45 (463)
315 TIGR02374 nitri_red_nirB nitri 97.1 0.0037 8.1E-08 72.9 12.0 51 190-247 188-238 (785)
316 TIGR03385 CoA_CoA_reduc CoA-di 97.1 0.0057 1.2E-07 66.4 12.6 32 48-79 138-169 (427)
317 PRK06467 dihydrolipoamide dehy 97.1 0.0068 1.5E-07 66.6 13.2 32 48-79 175-206 (471)
318 TIGR01424 gluta_reduc_2 glutat 97.0 0.0084 1.8E-07 65.4 13.6 31 49-79 168-198 (446)
319 PF06100 Strep_67kDa_ant: Stre 97.0 0.017 3.7E-07 61.8 15.0 62 184-247 207-274 (500)
320 TIGR01423 trypano_reduc trypan 97.0 0.0075 1.6E-07 66.4 12.9 53 187-245 234-286 (486)
321 PRK07845 flavoprotein disulfid 97.0 0.0074 1.6E-07 66.2 12.9 31 49-79 179-209 (466)
322 PF13434 K_oxygenase: L-lysine 97.0 0.0044 9.6E-08 64.8 10.5 140 46-244 189-338 (341)
323 PLN02507 glutathione reductase 97.0 0.0086 1.9E-07 66.2 13.3 32 48-79 204-235 (499)
324 PRK11749 dihydropyrimidine deh 97.0 0.0078 1.7E-07 65.9 12.7 32 48-79 274-306 (457)
325 PRK14694 putative mercuric red 97.0 0.0097 2.1E-07 65.4 13.5 32 48-79 179-210 (468)
326 PLN02529 lysine-specific histo 97.0 0.001 2.2E-08 75.8 5.8 39 46-84 159-197 (738)
327 PTZ00058 glutathione reductase 96.9 0.011 2.3E-07 66.1 13.6 32 48-79 238-269 (561)
328 PRK06292 dihydrolipoamide dehy 96.9 0.0099 2.2E-07 65.2 13.2 32 48-79 170-201 (460)
329 PLN02328 lysine-specific histo 96.9 0.0011 2.4E-08 75.9 5.7 39 46-84 237-275 (808)
330 PRK08010 pyridine nucleotide-d 96.9 0.013 2.9E-07 63.8 13.6 31 49-79 160-190 (441)
331 TIGR01438 TGR thioredoxin and 96.9 0.012 2.6E-07 64.8 13.1 31 49-79 182-212 (484)
332 COG0446 HcaD Uncharacterized N 96.9 0.0087 1.9E-07 64.3 11.8 33 48-80 137-169 (415)
333 PRK14727 putative mercuric red 96.8 0.017 3.6E-07 63.7 13.7 31 49-79 190-220 (479)
334 PRK13512 coenzyme A disulfide 96.7 0.013 2.8E-07 63.8 11.9 31 49-79 150-180 (438)
335 PRK13748 putative mercuric red 96.7 0.016 3.5E-07 65.3 13.1 31 49-79 272-302 (561)
336 PTZ00052 thioredoxin reductase 96.7 0.016 3.5E-07 64.1 12.8 30 49-78 184-213 (499)
337 PTZ00153 lipoamide dehydrogena 96.7 0.018 4E-07 65.3 13.3 31 49-79 314-344 (659)
338 KOG1335 Dihydrolipoamide dehyd 96.7 0.012 2.5E-07 60.2 10.2 57 189-246 257-313 (506)
339 PRK07846 mycothione reductase; 96.7 0.021 4.5E-07 62.4 13.2 32 48-79 167-198 (451)
340 PRK12779 putative bifunctional 96.7 0.014 3E-07 69.2 12.3 32 48-79 448-479 (944)
341 PRK06567 putative bifunctional 96.6 0.0026 5.6E-08 73.7 5.6 35 46-80 382-416 (1028)
342 PRK12770 putative glutamate sy 96.6 0.021 4.6E-07 60.2 12.2 31 49-79 174-205 (352)
343 PLN02546 glutathione reductase 96.5 0.029 6.3E-07 62.7 13.3 32 48-79 253-284 (558)
344 COG2907 Predicted NAD/FAD-bind 96.5 0.0026 5.7E-08 64.1 4.3 41 46-87 7-47 (447)
345 TIGR03452 mycothione_red mycot 96.5 0.035 7.5E-07 60.7 13.1 32 48-79 170-201 (452)
346 KOG0685 Flavin-containing amin 96.4 0.0043 9.2E-08 65.3 5.3 39 46-84 20-59 (498)
347 PTZ00188 adrenodoxin reductase 96.4 0.004 8.6E-08 67.2 5.0 36 48-83 40-76 (506)
348 KOG1336 Monodehydroascorbate/f 96.4 0.025 5.5E-07 59.7 10.7 55 188-247 259-313 (478)
349 PTZ00318 NADH dehydrogenase-li 96.4 0.031 6.7E-07 60.6 11.9 56 399-467 295-350 (424)
350 COG1252 Ndh NADH dehydrogenase 96.3 0.016 3.4E-07 61.3 8.9 52 185-246 210-261 (405)
351 TIGR03143 AhpF_homolog putativ 96.3 0.029 6.3E-07 63.0 11.5 32 48-79 144-175 (555)
352 PLN03000 amine oxidase 96.3 0.0053 1.1E-07 70.7 5.4 39 46-84 183-221 (881)
353 KOG1276 Protoporphyrinogen oxi 96.2 0.0051 1.1E-07 63.8 4.6 38 47-84 11-50 (491)
354 PLN02976 amine oxidase 96.2 0.0058 1.3E-07 73.0 5.5 40 46-85 692-731 (1713)
355 TIGR01372 soxA sarcosine oxida 95.8 0.067 1.4E-06 64.2 12.1 52 193-247 360-411 (985)
356 PRK06567 putative bifunctional 95.7 0.028 6.1E-07 65.3 7.8 56 192-247 648-728 (1028)
357 COG0493 GltD NADPH-dependent g 95.6 0.01 2.2E-07 64.3 3.9 34 48-81 124-157 (457)
358 COG3634 AhpF Alkyl hydroperoxi 95.6 0.085 1.8E-06 53.4 9.9 52 192-244 397-449 (520)
359 COG0492 TrxB Thioredoxin reduc 95.4 0.13 2.8E-06 52.8 10.9 48 194-245 188-236 (305)
360 PF00996 GDI: GDP dissociation 95.4 0.019 4E-07 61.6 4.8 52 185-242 233-284 (438)
361 TIGR03169 Nterm_to_SelD pyridi 95.2 0.16 3.4E-06 53.8 11.4 47 190-247 197-243 (364)
362 PRK12814 putative NADPH-depend 95.0 0.24 5.1E-06 56.8 12.7 40 419-467 464-503 (652)
363 COG3486 IucD Lysine/ornithine 94.6 0.28 6.1E-06 51.1 10.5 60 184-244 275-337 (436)
364 COG3486 IucD Lysine/ornithine 94.6 0.8 1.7E-05 47.9 13.7 37 44-80 2-39 (436)
365 KOG0399 Glutamate synthase [Am 94.6 0.041 9E-07 63.2 4.8 37 46-82 1784-1820(2142)
366 TIGR01317 GOGAT_sm_gam glutama 94.3 0.5 1.1E-05 52.1 12.7 39 419-466 442-480 (485)
367 KOG1800 Ferredoxin/adrenodoxin 94.2 0.055 1.2E-06 55.5 4.5 36 49-84 22-59 (468)
368 PLN02852 ferredoxin-NADP+ redu 94.1 0.65 1.4E-05 50.9 12.9 48 197-244 288-351 (491)
369 COG1206 Gid NAD(FAD)-utilizing 94.0 0.049 1.1E-06 54.7 3.5 32 48-79 4-35 (439)
370 KOG3855 Monooxygenase involved 93.8 0.079 1.7E-06 55.0 4.7 34 46-79 35-72 (481)
371 TIGR03315 Se_ygfK putative sel 92.9 0.78 1.7E-05 54.5 11.6 32 48-79 667-700 (1012)
372 PRK09853 putative selenate red 92.8 0.87 1.9E-05 53.9 11.8 32 48-79 669-702 (1019)
373 COG1251 NirB NAD(P)H-nitrite r 92.5 0.46 1E-05 53.2 8.5 52 190-248 193-244 (793)
374 PF02558 ApbA: Ketopantoate re 90.7 0.35 7.7E-06 43.9 4.5 31 50-80 1-31 (151)
375 TIGR00292 thiazole biosynthesi 90.5 0.31 6.7E-06 48.7 4.3 44 419-464 210-253 (254)
376 PF01210 NAD_Gly3P_dh_N: NAD-d 90.5 0.28 6E-06 45.1 3.6 30 50-79 2-31 (157)
377 PF13241 NAD_binding_7: Putati 90.0 0.28 6E-06 41.6 3.0 32 48-79 8-39 (103)
378 PRK02705 murD UDP-N-acetylmura 89.9 0.3 6.5E-06 53.5 4.0 30 50-79 3-32 (459)
379 TIGR03385 CoA_CoA_reduc CoA-di 89.8 0.23 4.9E-06 53.9 2.9 50 195-248 55-104 (427)
380 PRK04148 hypothetical protein; 89.7 1.4 3.1E-05 39.0 7.3 30 49-79 19-48 (134)
381 KOG3851 Sulfide:quinone oxidor 89.6 0.3 6.4E-06 49.1 3.2 35 45-79 37-73 (446)
382 COG1635 THI4 Ribulose 1,5-bisp 89.6 0.36 7.8E-06 46.1 3.6 45 419-465 216-260 (262)
383 PRK04176 ribulose-1,5-biphosph 89.5 0.39 8.5E-06 48.1 4.1 45 419-465 211-255 (257)
384 PRK01438 murD UDP-N-acetylmura 89.4 0.4 8.7E-06 52.9 4.5 31 49-79 18-48 (480)
385 PF13738 Pyr_redox_3: Pyridine 89.0 0.44 9.6E-06 45.5 4.0 34 47-80 167-200 (203)
386 TIGR01470 cysG_Nterm siroheme 88.8 0.52 1.1E-05 45.5 4.2 31 49-79 11-41 (205)
387 PF01593 Amino_oxidase: Flavin 88.6 0.39 8.4E-06 51.5 3.6 47 193-246 218-264 (450)
388 KOG0404 Thioredoxin reductase 88.1 2.8 6E-05 40.2 8.3 52 192-244 200-252 (322)
389 KOG2755 Oxidoreductase [Genera 87.5 0.41 9E-06 46.8 2.6 30 50-79 2-33 (334)
390 PF01262 AlaDh_PNT_C: Alanine 87.4 0.78 1.7E-05 42.7 4.4 32 48-79 21-52 (168)
391 PLN02661 Putative thiazole syn 87.3 0.65 1.4E-05 48.3 4.1 45 419-465 284-328 (357)
392 KOG1439 RAB proteins geranylge 87.3 0.33 7.2E-06 50.3 1.9 41 45-85 2-42 (440)
393 PF02737 3HCDH_N: 3-hydroxyacy 87.2 0.77 1.7E-05 43.3 4.3 30 50-79 2-31 (180)
394 KOG3923 D-aspartate oxidase [A 87.0 0.66 1.4E-05 46.3 3.7 35 48-82 4-45 (342)
395 PF01134 GIDA: Glucose inhibit 86.8 0.9 2E-05 48.0 4.9 38 419-466 353-390 (392)
396 KOG4405 GDP dissociation inhib 86.8 0.66 1.4E-05 48.2 3.7 41 45-85 6-46 (547)
397 PF01488 Shikimate_DH: Shikima 86.7 1.1 2.4E-05 40.0 4.8 33 47-79 12-45 (135)
398 COG0569 TrkA K+ transport syst 86.3 0.95 2.1E-05 44.3 4.5 31 49-79 2-32 (225)
399 COG5044 MRS6 RAB proteins gera 86.1 1.1 2.3E-05 46.2 4.7 37 47-83 6-42 (434)
400 TIGR00518 alaDH alanine dehydr 85.8 0.92 2E-05 48.1 4.4 33 47-79 167-199 (370)
401 PRK06718 precorrin-2 dehydroge 85.8 0.99 2.1E-05 43.4 4.2 32 48-79 11-42 (202)
402 PRK06719 precorrin-2 dehydroge 85.8 1 2.2E-05 41.4 4.2 32 47-78 13-44 (157)
403 PRK14106 murD UDP-N-acetylmura 85.6 0.89 1.9E-05 49.7 4.4 32 48-79 6-37 (450)
404 PRK09424 pntA NAD(P) transhydr 85.4 0.97 2.1E-05 49.7 4.4 33 47-79 165-197 (509)
405 PF03721 UDPG_MGDP_dh_N: UDP-g 84.9 0.89 1.9E-05 43.0 3.4 30 50-79 3-32 (185)
406 COG0686 Ald Alanine dehydrogen 84.6 0.83 1.8E-05 45.9 3.1 34 46-79 167-200 (371)
407 KOG4716 Thioredoxin reductase 84.2 2.4 5.2E-05 43.2 6.1 31 49-79 200-230 (503)
408 PRK05708 2-dehydropantoate 2-r 83.6 1.6 3.4E-05 45.0 4.9 31 49-79 4-34 (305)
409 PRK15116 sulfur acceptor prote 82.9 1.7 3.7E-05 43.6 4.7 36 46-81 29-65 (268)
410 PRK06249 2-dehydropantoate 2-r 82.8 1.9 4.2E-05 44.5 5.2 31 49-79 7-37 (313)
411 PRK06129 3-hydroxyacyl-CoA deh 82.7 1.5 3.3E-05 45.2 4.3 31 49-79 4-34 (308)
412 COG3075 GlpB Anaerobic glycero 82.6 0.43 9.4E-06 48.2 0.3 35 47-81 2-36 (421)
413 cd00401 AdoHcyase S-adenosyl-L 82.6 1.5 3.3E-05 46.8 4.4 32 48-79 203-234 (413)
414 KOG2495 NADH-dehydrogenase (ub 82.4 8.3 0.00018 40.8 9.4 51 190-247 279-329 (491)
415 TIGR01316 gltA glutamate synth 82.1 1.6 3.5E-05 47.7 4.5 32 48-79 273-304 (449)
416 PRK12921 2-dehydropantoate 2-r 81.9 1.7 3.8E-05 44.5 4.5 30 49-78 2-31 (305)
417 PRK12831 putative oxidoreducta 81.7 1.6 3.5E-05 47.9 4.3 32 48-79 282-313 (464)
418 PF02254 TrkA_N: TrkA-N domain 81.5 2.3 5.1E-05 36.4 4.5 30 50-79 1-30 (116)
419 TIGR03378 glycerol3P_GlpB glyc 81.4 1.3 2.8E-05 47.4 3.3 33 48-80 1-33 (419)
420 TIGR03467 HpnE squalene-associ 81.0 4.7 0.0001 43.2 7.7 55 186-246 199-253 (419)
421 TIGR02354 thiF_fam2 thiamine b 80.9 2.1 4.6E-05 41.0 4.4 35 46-80 20-55 (200)
422 TIGR02355 moeB molybdopterin s 80.9 2.5 5.4E-05 41.8 4.9 37 46-82 23-60 (240)
423 PRK06522 2-dehydropantoate 2-r 80.6 2 4.4E-05 44.0 4.4 30 50-79 3-32 (304)
424 PRK12548 shikimate 5-dehydroge 79.9 2.3 5.1E-05 43.4 4.5 31 49-79 128-159 (289)
425 PRK12475 thiamine/molybdopteri 79.8 2.5 5.5E-05 44.1 4.8 35 47-81 24-59 (338)
426 PF00899 ThiF: ThiF family; I 79.4 2.2 4.9E-05 37.9 3.7 34 48-81 3-37 (135)
427 PRK08293 3-hydroxybutyryl-CoA 79.3 2.4 5.3E-05 43.2 4.5 31 49-79 5-35 (287)
428 PRK09260 3-hydroxybutyryl-CoA 79.2 2.5 5.5E-05 43.0 4.6 31 49-79 3-33 (288)
429 PRK12549 shikimate 5-dehydroge 79.0 2.3 4.9E-05 43.3 4.1 32 48-79 128-160 (284)
430 TIGR00561 pntA NAD(P) transhyd 78.8 2.4 5.3E-05 46.5 4.4 33 47-79 164-196 (511)
431 PRK02472 murD UDP-N-acetylmura 78.4 2.2 4.7E-05 46.5 4.0 31 49-79 7-37 (447)
432 PRK07688 thiamine/molybdopteri 78.4 2.7 5.9E-05 43.9 4.5 36 46-81 23-59 (339)
433 PRK08328 hypothetical protein; 78.3 2.9 6.3E-05 41.1 4.5 36 46-81 26-62 (231)
434 COG4716 Myosin-crossreactive a 77.8 1.6 3.4E-05 45.0 2.4 63 184-247 227-292 (587)
435 PRK08223 hypothetical protein; 77.6 3.4 7.3E-05 41.8 4.7 36 46-81 26-62 (287)
436 COG1063 Tdh Threonine dehydrog 77.4 2.7 5.8E-05 44.2 4.2 31 49-79 171-202 (350)
437 PRK05562 precorrin-2 dehydroge 77.4 3.1 6.7E-05 40.5 4.2 33 47-79 25-57 (223)
438 cd05311 NAD_bind_2_malic_enz N 76.8 3.6 7.7E-05 40.3 4.6 32 48-79 26-60 (226)
439 COG1748 LYS9 Saccharopine dehy 76.4 3.2 6.9E-05 43.8 4.3 31 49-79 3-34 (389)
440 TIGR02356 adenyl_thiF thiazole 75.9 3.9 8.3E-05 39.3 4.5 36 46-81 20-56 (202)
441 PRK07530 3-hydroxybutyryl-CoA 75.6 4.1 8.8E-05 41.6 4.9 31 49-79 6-36 (292)
442 PRK12550 shikimate 5-dehydroge 75.2 3.9 8.5E-05 41.3 4.5 31 49-79 124-155 (272)
443 PRK07066 3-hydroxybutyryl-CoA 75.2 3.7 8E-05 42.5 4.4 31 49-79 9-39 (321)
444 PRK06035 3-hydroxyacyl-CoA deh 75.2 3.7 8E-05 41.9 4.4 31 49-79 5-35 (291)
445 cd01483 E1_enzyme_family Super 75.2 4.6 9.9E-05 36.2 4.6 32 50-81 2-34 (143)
446 PRK05690 molybdopterin biosynt 75.1 3.7 8.1E-05 40.7 4.3 36 46-81 31-67 (245)
447 PRK08229 2-dehydropantoate 2-r 75.0 3.7 8E-05 42.9 4.5 31 49-79 4-34 (341)
448 cd01075 NAD_bind_Leu_Phe_Val_D 74.9 3.9 8.4E-05 39.2 4.2 31 49-79 30-60 (200)
449 TIGR00936 ahcY adenosylhomocys 74.6 3.8 8.2E-05 43.8 4.4 34 47-80 195-228 (406)
450 PRK08644 thiamine biosynthesis 74.5 4.5 9.8E-05 39.2 4.6 36 46-81 27-63 (212)
451 cd01487 E1_ThiF_like E1_ThiF_l 74.4 4.8 0.0001 37.6 4.6 31 50-80 2-33 (174)
452 PRK07819 3-hydroxybutyryl-CoA 74.3 4.5 9.8E-05 41.2 4.8 31 49-79 7-37 (286)
453 PRK08306 dipicolinate synthase 74.3 4 8.7E-05 41.8 4.4 33 47-79 152-184 (296)
454 COG1004 Ugd Predicted UDP-gluc 73.9 4 8.7E-05 42.7 4.2 31 49-79 2-32 (414)
455 cd05292 LDH_2 A subgroup of L- 73.8 4.2 9.1E-05 41.9 4.4 31 49-79 2-34 (308)
456 cd01080 NAD_bind_m-THF_DH_Cycl 73.7 5 0.00011 37.3 4.5 34 46-79 43-77 (168)
457 KOG0024 Sorbitol dehydrogenase 73.1 4.6 0.0001 41.1 4.3 33 46-78 169-202 (354)
458 PRK04308 murD UDP-N-acetylmura 72.9 4.3 9.3E-05 44.2 4.5 31 49-79 7-37 (445)
459 PRK12778 putative bifunctional 72.8 4.2 9.2E-05 47.6 4.7 49 399-466 703-751 (752)
460 PRK03369 murD UDP-N-acetylmura 72.7 4 8.6E-05 45.1 4.2 31 49-79 14-44 (488)
461 PF13478 XdhC_C: XdhC Rossmann 72.7 3.5 7.6E-05 36.8 3.1 30 50-79 1-30 (136)
462 PLN02520 bifunctional 3-dehydr 72.6 3.9 8.5E-05 45.5 4.1 32 48-79 380-411 (529)
463 PRK14027 quinate/shikimate deh 71.9 4.7 0.0001 40.9 4.2 32 48-79 128-160 (283)
464 PRK05808 3-hydroxybutyryl-CoA 71.5 5.2 0.00011 40.6 4.5 31 49-79 5-35 (282)
465 TIGR01763 MalateDH_bact malate 71.2 5.3 0.00011 41.1 4.4 30 49-78 3-33 (305)
466 PRK14620 NAD(P)H-dependent gly 71.2 5.1 0.00011 41.6 4.4 30 50-79 3-32 (326)
467 PRK05476 S-adenosyl-L-homocyst 71.1 4.9 0.00011 43.2 4.2 32 48-79 213-244 (425)
468 COG2072 TrkA Predicted flavopr 70.8 4.5 9.6E-05 44.1 4.0 34 48-81 176-209 (443)
469 TIGR01809 Shik-DH-AROM shikima 70.7 5.3 0.00012 40.6 4.3 32 48-79 126-158 (282)
470 PRK00258 aroE shikimate 5-dehy 70.5 5.4 0.00012 40.4 4.3 32 48-79 124-156 (278)
471 cd00757 ThiF_MoeB_HesA_family 70.5 5.7 0.00012 38.9 4.3 34 47-80 21-55 (228)
472 TIGR02853 spore_dpaA dipicolin 70.4 5.4 0.00012 40.6 4.3 33 47-79 151-183 (287)
473 PRK05597 molybdopterin biosynt 70.3 5.7 0.00012 41.8 4.5 36 46-81 27-63 (355)
474 TIGR00507 aroE shikimate 5-deh 70.2 5.5 0.00012 40.2 4.3 32 48-79 118-149 (270)
475 PF00670 AdoHcyase_NAD: S-aden 70.0 4.9 0.00011 36.8 3.4 33 48-80 24-56 (162)
476 cd01485 E1-1_like Ubiquitin ac 69.9 7.1 0.00015 37.4 4.7 35 47-81 19-54 (198)
477 cd01078 NAD_bind_H4MPT_DH NADP 69.9 6.4 0.00014 37.4 4.4 32 48-79 29-61 (194)
478 TIGR03736 PRTRC_ThiF PRTRC sys 69.5 5.5 0.00012 39.4 3.9 35 46-80 10-55 (244)
479 cd01484 E1-2_like Ubiquitin ac 69.3 6 0.00013 38.9 4.2 32 50-81 2-34 (234)
480 cd00755 YgdL_like Family of ac 68.8 6.5 0.00014 38.6 4.3 34 47-80 11-45 (231)
481 TIGR01381 E1_like_apg7 E1-like 68.8 5.7 0.00012 44.6 4.2 36 46-81 337-373 (664)
482 PRK00141 murD UDP-N-acetylmura 68.7 5.3 0.00011 43.9 4.1 30 50-79 18-47 (473)
483 cd05191 NAD_bind_amino_acid_DH 68.7 7.9 0.00017 31.3 4.1 31 48-78 24-55 (86)
484 TIGR02734 crtI_fam phytoene de 68.4 7.7 0.00017 42.9 5.4 37 50-86 1-37 (502)
485 PRK06130 3-hydroxybutyryl-CoA 68.3 7.4 0.00016 40.1 4.9 31 49-79 6-36 (311)
486 PTZ00082 L-lactate dehydrogena 68.3 8.1 0.00018 40.0 5.1 32 48-79 7-39 (321)
487 KOG2755 Oxidoreductase [Genera 68.2 3.7 8.1E-05 40.4 2.3 27 395-431 294-320 (334)
488 PRK06720 hypothetical protein; 68.1 9.3 0.0002 35.5 5.0 32 48-79 17-49 (169)
489 PRK04690 murD UDP-N-acetylmura 68.1 5.7 0.00012 43.6 4.1 31 49-79 10-40 (468)
490 TIGR03026 NDP-sugDHase nucleot 68.0 5.8 0.00013 42.7 4.1 31 49-79 2-32 (411)
491 PRK01710 murD UDP-N-acetylmura 68.0 5.8 0.00012 43.4 4.2 31 49-79 16-46 (458)
492 PRK07878 molybdopterin biosynt 67.7 6.7 0.00014 41.9 4.5 36 46-81 41-77 (392)
493 PRK00094 gpsA NAD(P)H-dependen 67.6 6.8 0.00015 40.5 4.5 31 49-79 3-33 (325)
494 PLN02494 adenosylhomocysteinas 67.5 6.9 0.00015 42.4 4.4 33 47-79 254-286 (477)
495 cd05291 HicDH_like L-2-hydroxy 67.3 6.8 0.00015 40.3 4.3 31 49-79 2-34 (306)
496 PRK11064 wecC UDP-N-acetyl-D-m 67.2 6.4 0.00014 42.4 4.2 31 49-79 5-35 (415)
497 COG1893 ApbA Ketopantoate redu 67.1 7.2 0.00016 40.1 4.4 30 50-79 3-32 (307)
498 PRK14618 NAD(P)H-dependent gly 66.9 7.8 0.00017 40.3 4.7 31 49-79 6-36 (328)
499 cd01492 Aos1_SUMO Ubiquitin ac 66.8 8.1 0.00017 36.9 4.4 35 46-80 20-55 (197)
500 PLN02172 flavin-containing mon 66.6 5.5 0.00012 43.6 3.6 32 48-79 205-236 (461)
No 1
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=100.00 E-value=3.5e-107 Score=904.88 Aligned_cols=632 Identities=91% Similarity=1.436 Sum_probs=541.3
Q ss_pred Cc-ccccccccCCCCCC-CcccccccccchhhhccccC-CCCCcccccccccEEEECCchHHHHHHHHHHhCCCcEEEEe
Q 046556 1 MW-RCVSRGLGLSSYRS-KRSVSNDSLRSHFSRLFSTN-STGGYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACIT 77 (633)
Q Consensus 1 ~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlE 77 (633)
|| ||+++|+.+-.--+ ..++...|++-.+.+.+++- -+.+++.++.++||||||+|+|||+||++|+++|++|+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVlVIG~G~AGl~AAl~Aae~G~~Vilve 80 (635)
T PLN00128 1 MWRRCVARGLRLLASSSASSSLASASLRTALSRFFSTGGGRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACIT 80 (635)
T ss_pred CcccchhhHHHHHhhhhcCCCCCccccccchhhhcccccccccCcceeeecCEEEECccHHHHHHHHHHHhcCCcEEEEE
Confidence 67 59999986642112 22244444444444444432 23455566778999999999999999999999999999999
Q ss_pred ecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcccccCCCccccc
Q 046556 78 KLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQR 157 (633)
Q Consensus 78 k~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~ 157 (633)
|....+|++..++||+++..+...+|+++.|+.|+++.+.+++|+++++.+++++++.++||+++|++|.+..+|.+...
T Consensus 81 K~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~ 160 (635)
T PLN00128 81 KLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQR 160 (635)
T ss_pred cCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHhHHHHHHHHHhCCCccccCCCCceeec
Confidence 99888899999999998877655678999999999999999999999999999999999999999999999888877777
Q ss_pred ccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcC
Q 046556 158 AFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAA 237 (633)
Q Consensus 158 ~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~ 237 (633)
.+++++..+..++..+|+++..+.+|..++..|.+.+.+.||+++.++.+++|+.+++++|+||++.+..+|+...|.|+
T Consensus 161 ~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak 240 (635)
T PLN00128 161 AFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAH 240 (635)
T ss_pred cccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcC
Confidence 77888765544445668888888999999999999999999999999999999984478999999987678988899999
Q ss_pred eEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccccccccccCCcceeeeccccCCCcEEECCCCCccccc
Q 046556 238 STILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMER 317 (633)
Q Consensus 238 ~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~ 317 (633)
+|||||||++++|..++++..+||||++||+++||.+.||||+||||+.+++.++++ ++++++.|++++|.+|+|||++
T Consensus 241 aVILATGG~g~~~~~tt~~~~~tGDG~~mA~~aGA~l~~mefvqfhPt~~~~~~~l~-~ea~rg~g~~lvN~~GeRF~~~ 319 (635)
T PLN00128 241 STILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLI-TEGSRGEGGILRNSEGERFMER 319 (635)
T ss_pred eEEECCCCCccccccccCCCCCCCHHHHHHHHcCCCCcCCcceEEecccccCCCeEE-eeeccCCCcEEECCCCCCcccc
Confidence 999999999999999899999999999999999999999999999999887777777 8899999999999999999999
Q ss_pred cCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCChhHHHHHhHHHHHHHHHHcCCCCCCCCeecccccccc
Q 046556 318 YAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYN 397 (633)
Q Consensus 318 ~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~ 397 (633)
|+|...++.+||++++++..++.+++|+.+..+.+|+|+++++++.++++++.+++.+..+.|+|+.++|+||.|++||+
T Consensus 320 y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~l~~e~l~~~~~~~~~~~~~~~G~D~~~~pi~v~P~~hyt 399 (635)
T PLN00128 320 YAPTAKDLASRDVVSRSMTMEIREGRGVGPEKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYN 399 (635)
T ss_pred cCcccccccchhHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCceEeeccceEe
Confidence 99987899999999999999998887764434569999999999999999999999887778999999999999999999
Q ss_pred ccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccch
Q 046556 398 MGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNA 477 (633)
Q Consensus 398 ~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~ 477 (633)
||||.||.+++|++.+.++.+|+||||||||||+|+++||+||||||+|++|+|||++||++|+++++............
T Consensus 400 ~GGi~vd~~g~vl~~~g~~~~t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~~~~~~~~~~~~~~~~ 479 (635)
T PLN00128 400 MGGIPTNYHGEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIAKPGEKQKPLPKDA 479 (635)
T ss_pred cCCcccCCCCeEecccCcccCCccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhhcccccccccchhh
Confidence 99999999999998755445689999999999998899999999999999999999999999998865321111111111
Q ss_pred hhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHH
Q 046556 478 GERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIEL 557 (633)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~ 557 (633)
.+...+.+..+...+++.+|.+++++||++||+++|++|++++|++++++|++|+++++++.+.+....+|++|.+++|+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 559 (635)
T PLN00128 480 GEKTIAWLDKLRNANGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCKLIDEAWDSFHDVKVTDRSLIWNSDLIETLEL 559 (635)
T ss_pred HHHHHHHHHHhhcccCCCChHHHHHHHHHHHhCceeEEECHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHH
Confidence 12222334444343445678899999999999999999999999999999999999998887777667789999999999
Q ss_pred HHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEEEeeCCeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 558 ENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 558 ~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
+|||++|+++++|||+|+||||+|||+|||++||++|+|+++..+.++++++.++||...+....+..++|..|.|
T Consensus 560 ~n~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 635 (635)
T PLN00128 560 ENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWEEGKVRLDYRPVHMNTLDDEVETFPPKARVY 635 (635)
T ss_pred HHHHHHHHHHHHHHHhCcCcccccccCCCCCCCccccccEEEEEecCCcceEEecccccccccccccccCCCCCCC
Confidence 9999999999999999999999999999999999999999988777788999999998765543356799999987
No 2
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=100.00 E-value=2.9e-103 Score=874.35 Aligned_cols=592 Identities=76% Similarity=1.240 Sum_probs=519.7
Q ss_pred cccccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCC
Q 046556 41 YTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLG 120 (633)
Q Consensus 41 ~~~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~ 120 (633)
++.++.++||||||||+|||+||+.|++.|++|+||||....+|++..++||+++..+....|+++.|+.|+++.+.+++
T Consensus 23 ~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~ 102 (617)
T PTZ00139 23 YPVIDHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLG 102 (617)
T ss_pred ccccccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCC
Confidence 33455789999999999999999999999999999999988889999999999887665567899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCE
Q 046556 121 DQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQ 200 (633)
Q Consensus 121 ~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~ 200 (633)
|+++++.+++++++.++||+++|++|.+..+|.+....+++++..+..++..+|.++..+.+|..++..|.+++++.|++
T Consensus 103 d~~lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~ 182 (617)
T PTZ00139 103 DQDAIQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCN 182 (617)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999999999999998888776666788776554455677888888999999999999999999999
Q ss_pred EEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccc
Q 046556 201 FFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFV 280 (633)
Q Consensus 201 i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 280 (633)
+++++.+++|+.+++|+|+||++.+..+|+.+.|.|++|||||||++++|..++++..+||||+.||+++||.+.||||+
T Consensus 183 i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~mef~ 262 (617)
T PTZ00139 183 FFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRAYFSCTSAHTCTGDGGAMVSRAGLPLQDLEFV 262 (617)
T ss_pred EEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccccCCcCCCCCcccHHHHHHHHcCCCccCCceE
Confidence 99999999999855789999999877789888999999999999999999988999999999999999999999999999
Q ss_pred ccccccccCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCC
Q 046556 281 QFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLP 360 (633)
Q Consensus 281 ~~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~ 360 (633)
||||+.+++.+.++ ++++++.|++++|.+|+|||++|+|...++.+|+++++++..++.+++|..+..+.||+|.++++
T Consensus 263 q~~pt~~~~~~~l~-~e~~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~~~v~lD~~~~~ 341 (617)
T PTZ00139 263 QFHPTGIYGAGCLI-TEGCRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRAMTIEILEGRGCGPNKDHIYLDLTHLP 341 (617)
T ss_pred EeccccccCCCcEE-EeeccCCCcEEECCCCCCcccccCccccccccchHHHHHHHHHHHhcCCCCCCCCEEEEECCCCC
Confidence 99999887777777 88999999999999999999999998778999999999999999888776444457999999999
Q ss_pred hhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCC
Q 046556 361 PDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANR 440 (633)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~r 440 (633)
++.|+++++.+++.+..+.|+||.++++||.|.+||++|||.||.+++|++.+..+++|+||||||||||+|+++||+||
T Consensus 342 ~~~l~~~~~~~~~~~~~~~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~v~d~~~~~~~t~I~GLyAaGE~a~~g~hGanr 421 (617)
T PTZ00139 342 PETLHERLPGISETAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNWKTQVLTQRNGDDDKIVPGLLAAGEAACASVHGANR 421 (617)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEecccceecCCeEEcCCceeeccccccCCCccCCceecccccccCcCCCcc
Confidence 99999999999998876679999999999999999999999999999998753333568999999999999889999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHH
Q 046556 441 LGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQET 520 (633)
Q Consensus 441 lgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~ 520 (633)
||||+|++|+|||++||++|+++++........+........+.+..+...+++.+|.+++++||++||+|+|++|++++
T Consensus 422 lggnsl~~~~vfGr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~ 501 (617)
T PTZ00139 422 LGANSLLDIVVFGRAAANTVMEILKPGRPQPDLPKDAGEASIARLDKIRHNKGDISTAQIRKRMQRTMQKHAAVFRIGES 501 (617)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhcccCCCcccchhhhHHHHHHHHHHhcccCCcChHHHHHHHHHHHhhhceeEECHHH
Confidence 99999999999999999999988653221112222111222233444444445567899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEE
Q 046556 521 LEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLG 600 (633)
Q Consensus 521 l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 600 (633)
|++++.+|++|++++..+.+.+....+|++|++++|++|||++|+++++|||+|+||||+|||+|||++||++|+|+++.
T Consensus 502 L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 581 (617)
T PTZ00139 502 LQEGVEKIKEIYSDFKDVKIKDKSLVWNTDLIETLELENLLTQAKQTILSAEARKESRGAHARDDFPERDDKNWMKHTLS 581 (617)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhccCcchhhccCcCCcCCchhhceEEEE
Confidence 99999999999998888877777677899999999999999999999999999999999999999999999999999987
Q ss_pred Eee---CCeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 601 YWE---NEKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 601 ~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
.+. +|++++.++|++..++...+..++|..|.|
T Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (617)
T PTZ00139 582 YIRDVKKGKVRLTYRPVITTPLDNEMETVPPAKRVY 617 (617)
T ss_pred EeccCCCCCceEEEecCccccccccccccCCCCCCC
Confidence 763 578999999998655443355799999988
No 3
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=4e-102 Score=864.39 Aligned_cols=592 Identities=72% Similarity=1.221 Sum_probs=516.1
Q ss_pred cccccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCC
Q 046556 41 YTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLG 120 (633)
Q Consensus 41 ~~~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~ 120 (633)
+++.+.++||||||||+|||+||+.|++.|++|+||||....+|++..++||+++..+....|+++.|+.|+++.+.+++
T Consensus 6 ~~~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~ 85 (598)
T PRK09078 6 YKIIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLG 85 (598)
T ss_pred ccccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCC
Confidence 33445689999999999999999999999999999999988889999999999887665557899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCE
Q 046556 121 DQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQ 200 (633)
Q Consensus 121 ~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~ 200 (633)
|+++++.+++++++.++||+++|++|.+..+|.+....+++++..++.+....|.++..+.+|..++..|.+.+++.|++
T Consensus 86 d~~lv~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~ 165 (598)
T PRK09078 86 DQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAE 165 (598)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCE
Confidence 99999999999999999999999999988888776666778765444344556888888889999999999999999999
Q ss_pred EEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccc
Q 046556 201 FFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFV 280 (633)
Q Consensus 201 i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 280 (633)
+++++.+++|+++++|+|+||++.+..+|+.+.|.|++|||||||++++|..+++++.+||||+.||+++||.+.+|||+
T Consensus 166 i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~t~~~~~tGdGi~ma~~aGA~l~~me~~ 245 (598)
T PRK09078 166 FFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGRAYFSATSAHTCTGDGGGMVLRAGLPLQDMEFV 245 (598)
T ss_pred EEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCccccCccCCCCCcccHHHHHHHHcCCCccCCchh
Confidence 99999999999854589999999876788888899999999999999999888888899999999999999999999999
Q ss_pred ccccccccCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCC
Q 046556 281 QFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLP 360 (633)
Q Consensus 281 ~~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~ 360 (633)
||||+.+.+.+.++ +++++++|+++||.+|+||+++|+|...++.+|+++++++..++.+++|+....+.+|+|+++++
T Consensus 246 q~~pt~~~~~~~l~-~e~~rg~G~ilvN~~GeRF~~ey~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~ 324 (598)
T PRK09078 246 QFHPTGIYGAGCLI-TEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRAMTIEIREGRGVGKKKDHIFLHLDHLD 324 (598)
T ss_pred eecccccCCCceEE-eecccCCceEEECCCCCCCchhcCccccccccchHHHHHHHHHHHhcCCCCCCCCEEEEECCCCC
Confidence 99999887766666 88899999999999999999999998788999999999999999888776444457999999999
Q ss_pred hhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCC
Q 046556 361 PDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANR 440 (633)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~r 440 (633)
++.|+++++.+++.+..+.|+|+.++|+||.|..||++|||.||.+++|++.++.+.+|+||||||||||+|+|+||+||
T Consensus 325 ~~~l~~~~~~~~~~~~~~~g~D~~~~pi~v~p~~h~t~GGi~vd~~~~v~~~~~~~~~t~I~GLyAaGE~a~~g~hGanr 404 (598)
T PRK09078 325 PEVLHERLPGISESAKIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVLTKTGDNPDAVVPGLMAVGEAACVSVHGANR 404 (598)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCcEEeecccEEcCCCcccCCCceeecccccccCCccCceeecccccccCCcCccc
Confidence 99999999999998876679999999999999999999999999999999875444568999999999999779999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHH
Q 046556 441 LGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQET 520 (633)
Q Consensus 441 lgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~ 520 (633)
||||+|++|+|||++||++|+++++......+..........+.+..+...+++.+|.+++++||++||+++|++|++++
T Consensus 405 lggnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~ 484 (598)
T PRK09078 405 LGSNSLIDLVVFGRAAALRAAEVIKPGAPHPPLPKDACDKALDRFDRLRHANGGTPTAELRLKMQRTMQEDAAVFRTGEV 484 (598)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhccCCCcccchhhHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHhCCeeEEECHHH
Confidence 99999999999999999999988753221122221111222223344444334467889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEE
Q 046556 521 LEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLG 600 (633)
Q Consensus 521 l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 600 (633)
|++++.+|++|++++.++.+.+....+|++|++++|++||+++|+++++|||+||||||+|||+|||++||++|++++++
T Consensus 485 L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~ 564 (598)
T PRK09078 485 LEEGVEKISEVWAGLPDIKVTDRSLIWNSDLVETLELDNLMAQAVVTMESAENRKESRGAHAREDFPDRDDENWMKHTLA 564 (598)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccchhccCCCCccCccccccEEEE
Confidence 99999999999998888877776667889999999999999999999999999999999999999999999999999988
Q ss_pred Eee-CCeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 601 YWE-NEKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 601 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
+++ +|++++.++|+...++..++..++|..|.|
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y 598 (598)
T PRK09078 565 WVDDKGKVKLDYRPVHLYTLTDDVQYIPPKKRVY 598 (598)
T ss_pred EecCCCCceEEeccCccccccccccccCCcCCCC
Confidence 775 688999999998655543455799999988
No 4
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=3.7e-100 Score=846.02 Aligned_cols=582 Identities=54% Similarity=0.872 Sum_probs=501.1
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
.++||||||+|+|||+||++|++.|++|+||||....+|++.+++||+++..+....|+++.|+.|+++.+.+++|++++
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 57899999999999999999999999999999998888999999999987765446799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEY 205 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~ 205 (633)
+.+++++++.++||+++|++|.+.++|.+....+++++..++ +....|+++..+.+|..++..|.+++.+.|+++++++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~-~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~ 164 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFG-GEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeeccccccccccc-ccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCc
Confidence 999999999999999999999988888776666777765432 2345688888888999999999999988999999999
Q ss_pred EEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccccccc
Q 046556 206 FALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPT 285 (633)
Q Consensus 206 ~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~ 285 (633)
.+++|+.+++|+|+||++.+..+|+...|+|+.|||||||++++|..+++++.+||||+.||+++||.+.||||+||||+
T Consensus 165 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~Pt 244 (588)
T PRK08958 165 YALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPT 244 (588)
T ss_pred EEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccccccccCCCCCCcHHHHHHHHcCCcCcCCcceEeecC
Confidence 99999985578999999987678888889999999999999999988888889999999999999999999999999998
Q ss_pred cccCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCC-CCCeEEEecCCCChhHH
Q 046556 286 GIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGP-LKDHIYLHLNHLPPDVL 364 (633)
Q Consensus 286 ~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~-~~~~v~~d~~~~~~~~l 364 (633)
.+.+.+.++ ++.++++|+++||++|+||+++|+|...++.+|+++++++..++.+++|+.. ....+|+|+++++++.+
T Consensus 245 ~~~~~~~l~-~e~~rg~g~ilvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~~v~ld~~~l~~~~l 323 (588)
T PRK08958 245 GIAGAGVLV-TEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVL 323 (588)
T ss_pred cccCCceEE-eeccccCceEEECCCCCChhhhhCccccccCChhHHHHHHHHHHHhcCCCcCCCCCeEEEEcccCCHHHH
Confidence 877666666 8889999999999999999999999877899999999999999988877521 12358999999999999
Q ss_pred HHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChh
Q 046556 365 KERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGAN 444 (633)
Q Consensus 365 ~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~ 444 (633)
+++++.+...+..+.++||.++|+||.|.+||++|||.||.+++|++.|.++.+|+||||||||||+|+++||+||||||
T Consensus 324 ~~~~~~~~~~~~~~~~~d~~~~~i~v~p~~h~t~GGi~vd~~g~v~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggn 403 (588)
T PRK08958 324 ESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGN 403 (588)
T ss_pred HHHcccHHHHHHHhcCCCcCCCcceeehhhcEeCCCeeECCCceeeccccccCCCccCCeEecccccccCCCCCccchhh
Confidence 99999888877766789999999999999999999999999999998753334589999999999987789999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHHHHH
Q 046556 445 SLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEG 524 (633)
Q Consensus 445 ~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l~~~ 524 (633)
||++|+|||++||++|+++++........+....+...+.+..+....+..++.+++++||++||+|+||+||+++|++|
T Consensus 404 sl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~a 483 (588)
T PRK08958 404 SLLDLVVFGRAAGLHLQESLAEQGALRDASESDIEASLARLNRWNNNRNGEDPVQIRKALQECMQNNFSVFREGDAMAKG 483 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHhCCEEEEECHHHHHHH
Confidence 99999999999999999887532111222222222233333333333344678899999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEEEeeC
Q 046556 525 CQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWEN 604 (633)
Q Consensus 525 l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~~~ 604 (633)
|.+|++|++++.++.+.+.+..+|.++++++|++|||++|+++++|||+|+||||+|||+|||++||++|+|+++....+
T Consensus 484 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~ 563 (588)
T PRK08958 484 LEELKVIRERLKNARLDDTSSEFNTQRIECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPET 563 (588)
T ss_pred HHHHHHHHHHHHhcccCccccccchhhHHHHHHHhHHHHHHHHHHHHHhCCCCcccccCCCCCCCCchhhceEEEEecCC
Confidence 99999999999888877776678889999999999999999999999999999999999999999999999998654344
Q ss_pred CeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 605 EKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 605 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
+ ++.++++...++. +..++|..|.|
T Consensus 564 ~--~~~~~~~~~~~~~--~~~~~p~~r~y 588 (588)
T PRK08958 564 E--SMTRRSVNMEPKL--RPAFPPKIRTY 588 (588)
T ss_pred C--cccccccccccce--eeeeCCCCCCC
Confidence 4 4455666554443 34689999988
No 5
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=100.00 E-value=1.8e-99 Score=847.37 Aligned_cols=572 Identities=38% Similarity=0.610 Sum_probs=492.7
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCC---CcCCHHHHHHHHHhcCCCCCC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM---TEDDWRWHMYDTVKGSDWLGD 121 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~---~~d~~~~~~~d~~~~~~~~~~ 121 (633)
..++||||||+|.|||+||+.|+++|++|+||||....+|+|..++||+.+.++.. ..|+++.|+.|+++.+.+.+|
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D 82 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCD 82 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCC
Confidence 46799999999999999999999999999999999888899999999988766532 468999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccc-------ccc------CCcccccCCCCccceeEEccCCchHHHHH
Q 046556 122 QDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQ-------RAF------GGQSLDFGKGGQAYRCACAADRTGHALLH 188 (633)
Q Consensus 122 ~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~-------~~~------gg~~~~~~~g~~~~r~~~~~~~~g~~l~~ 188 (633)
+++++.+++++++.++||+++|++|.+..+|.... ... +........|...+|+++..+.+|..++.
T Consensus 83 ~~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~ 162 (657)
T PRK08626 83 QEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLY 162 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHH
Confidence 99999999999999999999999998765442100 000 00000011234456888888889999999
Q ss_pred HHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHH
Q 046556 189 TLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVS 268 (633)
Q Consensus 189 ~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~ 268 (633)
.|.+.+.+.|+++++++.+++|+. ++++|+||++.+..+|+...|.|+.|||||||++++|..+++++.+||||+.||+
T Consensus 163 ~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~y~~ttn~~~~tGdG~~mA~ 241 (657)
T PRK08626 163 AVDNEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGGYGRIYKVTTNAVICEGIGAAIAL 241 (657)
T ss_pred HHHHHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCCCCCCCCCCCcChHHHHHHH
Confidence 999999999999999999999998 6799999999876789888899999999999999999999999999999999999
Q ss_pred HcCC-CccCccccccccccccCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCC-
Q 046556 269 RAGL-PLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVG- 346 (633)
Q Consensus 269 ~aGa-~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~- 346 (633)
++|+ .+.||||+||||+.+.+.+.++ ++++++.|++++|.+|+|||++|.|...++.+||+++++|..++.+|+|+.
T Consensus 242 ~aGaa~l~~mE~vqfhPt~~~~~g~l~-~e~~rg~G~ilvn~~G~RF~~~y~p~~~Ela~rd~vsrai~~~~~~g~g~~~ 320 (657)
T PRK08626 242 ETGVAPLGNMEAVQFHPTAIVPSGILV-TEGCRGDGGLLRDKDGYRFMPDYEPEKKELASRDVVSRRMTEHIRKGKGVKS 320 (657)
T ss_pred HcCCccccCccceEEeccEECCCCeEE-EeeccCCCEEEECCCCCCCCcccCcccccccchhHHHHHHHHHHHhcCCCCC
Confidence 9996 7999999999999888877777 899999999999999999999999988899999999999999999988763
Q ss_pred CCCCeEEEecCCCChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCC-cccCee
Q 046556 347 PLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDE-VVPGLM 425 (633)
Q Consensus 347 ~~~~~v~~d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T-~ipGLy 425 (633)
+.+..||+|+++++.+.+.++++.+.+.+..+.|+||.++++||.|+.||+||||.||.+++ | +|||||
T Consensus 321 ~~~~~v~lD~~~~~~~~i~~~~~~i~e~~~~~~giD~~~~~i~v~P~~hytmGGi~vd~~~~----------t~~I~GLy 390 (657)
T PRK08626 321 PYGPHLWLDIRILGRKHIETNLREVQEICENFLGIDPAKDWIPVRPTQHYSMGGIRTNPTGE----------SYGLKGLF 390 (657)
T ss_pred CCCCEEEEECCCCCHHHHHHHHhHHHHHHHHHcCCCCcCceEEEEecccEecCCceECCCCC----------CcccCCEE
Confidence 23346999999999888999999998888766899999999999999999999999999988 6 699999
Q ss_pred eecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCC--CCCccchhhhHHHHHHHhhhcCCCCChHHHHHH
Q 046556 426 AAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQ--KPLENNAGERTVAWLDKIRNSNGSIPTSKIRLN 503 (633)
Q Consensus 426 AaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (633)
|||||+|+++||+||||||||++|+|||++||++|+++++..... ........++..+.+..+...++..++.+++++
T Consensus 391 AaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 470 (657)
T PRK08626 391 SAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLGNELEIDTALVEKFVKKQQDRIDELIAGEGKENVFEIKNE 470 (657)
T ss_pred ecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhccCCccccchhhhHHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 999999889999999999999999999999999999987542111 111112222333445555555555678899999
Q ss_pred HHHHhhccceEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCcccccc
Q 046556 504 MQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAR 583 (633)
Q Consensus 504 l~~~m~~~~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R 583 (633)
||++||+++||+||+++|++++.+|++|+++++++.+.+....+|++|++++|++|||++|+++++|||+||||||+|||
T Consensus 471 lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~~~~a~e~~~~l~~a~~i~~aAl~R~ESRG~H~R 550 (657)
T PRK08626 471 MQEIMMEKVGIFRNGPELEKAVKELQELLERSKNIGLKSKKRGANPELEEALRVPRMLKLALCVAYGALARTESRGAHAR 550 (657)
T ss_pred HHHHHhcccCEEecHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCccceec
Confidence 99999999999999999999999999999999988888877778999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccceEEEEeeC-C--eeEEeeeeccccccCCcccccCCCCCCC
Q 046556 584 EDFTKRDDENWMKHTLGYWEN-E--KVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 584 ~D~P~~d~~~~~~~~~~~~~~-g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
+|||++||++|+|++++++++ + ++.+.++|+.+..+. ++|..|.|
T Consensus 551 ~DyP~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~~r~y 598 (657)
T PRK08626 551 EDYPKRNDRDWLNRTLASWPEGEALEPTLEYEPLDVMKME-----LPPGFRGY 598 (657)
T ss_pred CcCcccCchhhceEEEEEecCCCCccceeeeccceeeccc-----cCCccCcC
Confidence 999999999999999887763 2 278889888765432 68888887
No 6
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.7e-98 Score=831.13 Aligned_cols=559 Identities=42% Similarity=0.694 Sum_probs=486.2
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCC--CCcCCHHHHHHHHHhcCCCCCCHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN--MTEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~--~~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
.++||||||+|+|||+||+.|++.|++|+||||....+|++..++||+++.... ...|+++.++.|+++.+.+++|++
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~ 83 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQD 83 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHH
Confidence 579999999999999999999999999999999988888999999988864421 246889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEE
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFV 203 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~ 203 (633)
+++.+++++++.++||+++|++|.+.++|.+....+++++. +|.++..+.+|..++..|.+.+++.||++++
T Consensus 84 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~ 155 (566)
T PRK06452 84 AAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTY--------PRTRFVGDKTGMALLHTLFERTSGLNVDFYN 155 (566)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccC--------CeeEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 99999999999999999999999988777665555566543 4777777888999999999999888999999
Q ss_pred EEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccccc
Q 046556 204 EYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFH 283 (633)
Q Consensus 204 ~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~ 283 (633)
++.+++|+. ++|+|+||++.+..+|+...|+|++|||||||++.+|..+++++.+||||+.||+++||.+.+|||+|||
T Consensus 156 ~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~q~~ 234 (566)
T PRK06452 156 EWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGMLYRHTTNSYINTGDGFGIALRAGAALKDPEFVQFH 234 (566)
T ss_pred CcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccccCCCCCCCCcChHHHHHHHHcCCcccCCcceEEe
Confidence 999999999 6899999999886678888899999999999999888888888999999999999999999999999999
Q ss_pred cccccCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCChhH
Q 046556 284 PTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDV 363 (633)
Q Consensus 284 p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~ 363 (633)
|+.+.+.+.++ ++++++.|+++||.+|+|||++|.|...++.+|+++++++..++.+|+|+. ...+|+|.++++++.
T Consensus 235 pt~~~~~~~l~-~e~~rg~g~ilvN~~G~RF~~e~~~~~~~l~~rd~v~~ai~~e~~~g~g~~--~~~v~lD~~~~~~~~ 311 (566)
T PRK06452 235 PTALYPSDVLI-SEAARGEGGILKNVKGERFMTKYAPKKLDLAPRDIVSRAIITEIREGRGFP--GGYVGLDLTHLGEEY 311 (566)
T ss_pred eeEECCCCeEE-EEeeecCCCEEECCCCCCCccccCccccccCCccHHHHHHHHHHHhCCCCC--CCeEEEEcccCCHHH
Confidence 99887767666 888999999999999999999999987889999999999999999888751 246999999999998
Q ss_pred HHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCc-ccCeeeecccccccccCCCCCC
Q 046556 364 LKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEV-VPGLMAAGEAACASVHGANRLG 442 (633)
Q Consensus 364 l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~-ipGLyAaGe~a~~g~~Ga~rlg 442 (633)
++++++.+.+.+..+.|+||.+++|||.|++||++|||.||.+++ |+ ||||||||||+|+++||+||||
T Consensus 312 ~~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~----------t~~IpGLyAaGE~a~~g~hGanrlg 381 (566)
T PRK06452 312 IKERLALAVEAAKSFAGVDAFTEPIPVRPAQHYYMGGIDVDIDGR----------NPDIVGLFSAGEAACVSVHGANRLG 381 (566)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCeeeecccCEecCCeEECCCCC----------cCCcCCeEecccccccCCCCccccc
Confidence 898898887777766799999999999999999999999999887 75 9999999999877899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCc-cchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHH
Q 046556 443 ANSLLDIVVFGRACANRVAEIQRPGEKQKPLE-NNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETL 521 (633)
Q Consensus 443 g~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l 521 (633)
||+|++|+|||++||++|+++++......... ........+....+....++.++.+++++||++||+|+|++|++++|
T Consensus 382 gnsl~~~~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L 461 (566)
T PRK06452 382 SNSLLDTLVFGQVTGRTVVQFLKSNPGNPTSNYEKEAEKVVDDAYKFVKSESGVHFGQILEKLRDTMWDYVGIYRDEGGL 461 (566)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhhccccHHHH
Confidence 99999999999999999999875321111111 01111111111112233345678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEEE
Q 046556 522 EEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGY 601 (633)
Q Consensus 522 ~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~~ 601 (633)
++||.+|++|++++.++.+.|.+..+|++|++++|++|||++|+++++|||+|+||||+|||+|||++||++|+|+++.+
T Consensus 462 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~ 541 (566)
T PRK06452 462 LNAMSEINKLRGMISNMYVTDKSKVYNTEFFNALELRNMLDLALVIAKSALERKESRGAHYRTDYPDRDDNNWLKHTIAY 541 (566)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccccChhhHHHHHHHhHHHHHHHHHHHHHhCCCCcceeccCCCCCCCchhhccEEEEE
Confidence 99999999999999888777777778999999999999999999999999999999999999999999999999999988
Q ss_pred eeCCeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 602 WENEKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 602 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
+.++++.+.++|+.++ .++|..|.|
T Consensus 542 ~~~~~~~~~~~~~~~~-------~~~~~~~~~ 566 (566)
T PRK06452 542 LRGNTVEVTFKPVKIT-------RWKPEPRVY 566 (566)
T ss_pred ecCCCceeeecCcccc-------ccCCCCCCC
Confidence 7777888888887543 588899987
No 7
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.4e-97 Score=827.55 Aligned_cols=574 Identities=53% Similarity=0.873 Sum_probs=495.5
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHH
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 124 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~ 124 (633)
..++||||||+|+|||+||+.|++. ++|+|+||....+|++..++||+++..+....|+++.|+.|+++.+.+++|+++
T Consensus 3 ~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~ 81 (583)
T PRK08205 3 QHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDA 81 (583)
T ss_pred ceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHH
Confidence 4579999999999999999999987 899999999888888888999998876655678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEE
Q 046556 125 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVE 204 (633)
Q Consensus 125 v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~ 204 (633)
++.+++++++.++||+++|++|.+..+|.+....+++++..+. .....|.++..+.+|..++..|.+.+++.||+++++
T Consensus 82 v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~-~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~ 160 (583)
T PRK08205 82 AEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHG-KAPVRRACYAADRTGHMILQTLYQNCVKHGVEFFNE 160 (583)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCceeeccccccccccc-CCCccceeccCCCCHHHHHHHHHHHHHhcCCEEEeC
Confidence 9999999999999999999999988888777667777764321 112346677778889999999999999999999999
Q ss_pred EEEEEEEEccC---CcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccc
Q 046556 205 YFALDLIMNSD---GTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQ 281 (633)
Q Consensus 205 ~~v~~L~~d~~---g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~ 281 (633)
+.|++|+++++ |+|+||++.+..+|+...|.|++|||||||++++|..+++++.+||||+.||+++||.+.+|||+|
T Consensus 161 ~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q 240 (583)
T PRK08205 161 FYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRVYKTTSNAHTLTGDGMGIVFRKGLPLEDMEFHQ 240 (583)
T ss_pred CEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcccCCCcCCCCCCCcHHHHHHHHcCCCccCccceE
Confidence 99999998432 899999987767888778999999999999999998888999999999999999999999999999
Q ss_pred cccccccCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCCh
Q 046556 282 FHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPP 361 (633)
Q Consensus 282 ~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~ 361 (633)
|||+.+...+.++ ++.+++.|++++|.+|+||+++|+|...++.+|+++++++..++.+++|+.+..+.+|+|++++++
T Consensus 241 ~~Pt~~~~~~~l~-~e~~rg~g~ilvn~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~~ 319 (583)
T PRK08205 241 FHPTGLAGLGILI-SEAARGEGGILRNAEGERFMERYAPTIKDLAPRDIVARSMVLEVREGRGAGPNKDYVYLDLTHLGE 319 (583)
T ss_pred EecceecCCceEe-eecccCCceEEECCCCCCCccccCccccccccHHHHHHHHHHHHHhcCCCCCCCCEEEEecccCCh
Confidence 9999887666666 888999999999999999999999987899999999999999998888764434569999999999
Q ss_pred hHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCC
Q 046556 362 DVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRL 441 (633)
Q Consensus 362 ~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rl 441 (633)
+.++++++.++..+..+.|+||.++++||.|.+||++|||.||.+++|++. ++|+||||||||||+|+++||+|||
T Consensus 320 ~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~----~~t~IpGLyAaGE~a~~g~hGanrl 395 (583)
T PRK08205 320 EVLEAKLPDITEFARTYLGVDPVKEPVPVYPTAHYAMGGIPTTVDGEVLRD----NTTVVPGLYAAGECACVSVHGANRL 395 (583)
T ss_pred HHHHHHcchHHHHHHHHcCCCcCCCceEEEeeeeEECCCeeECCCceEecC----CCCCcCCeeeccccccCCCCCCcCC
Confidence 999999999988887667999999999999999999999999999999875 5699999999999987799999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHH
Q 046556 442 GANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETL 521 (633)
Q Consensus 442 gg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l 521 (633)
|||+|++|+|||++||++|+++++... ....+........+.+..+....+..++.+++++||++||+|+|++|++++|
T Consensus 396 ggnsl~~~~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L 474 (583)
T PRK08205 396 GTNSLLDINVFGRRAGIAAAEYARGAD-FVDLPENPEAMVVEWVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETL 474 (583)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhccC-ccCCchhhHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCEEECHHHH
Confidence 999999999999999999999875321 1122211111122223333333334568889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEEE
Q 046556 522 EEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGY 601 (633)
Q Consensus 522 ~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~~ 601 (633)
+.||.+|++|+++++++.+.+....+|++|++++|++|||++|+++++|||+||||||+|||+|||++||++|+++++.+
T Consensus 475 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~p~~~d~~~~~~~~~~ 554 (583)
T PRK08205 475 KQALTDIHALKERYKRITVQDKGKRFNTDLLEAIELGFLLDLAEVTVVGALNRKESRGGHAREDYPNRDDVNYMKHTMAY 554 (583)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhHHHHHHHHHHHHHhCcCCcccccCCCCCCcCccccceEEEEE
Confidence 99999999999988888777766778999999999999999999999999999999999999999999999999999876
Q ss_pred eeC----CeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 602 WEN----EKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 602 ~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
+.. ++..+.++++.++ .++|..|.|
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 583 (583)
T PRK08205 555 KEGTDLLSDIRLDYKPVVQT-------RYEPMERKY 583 (583)
T ss_pred ecCCCcCCcceeeeccceee-------eeCCCCCCC
Confidence 542 5677777777533 477888877
No 8
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=2.8e-97 Score=824.48 Aligned_cols=582 Identities=56% Similarity=0.930 Sum_probs=497.8
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHH
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 124 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~ 124 (633)
+.++||||||||+|||+||+.|++.|++|+||||....+|++..++||+++..+..+.|+++.|+.|+++.+.+++++++
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~ 89 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDA 89 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHH
Confidence 45799999999999999999999999999999999888899999999998877655678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEE
Q 046556 125 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVE 204 (633)
Q Consensus 125 v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~ 204 (633)
++.+++++++.++||+++|++|.+..+|.++...+++++..+. .....|.++..+.+|..++..|.+.+.+.|++++.+
T Consensus 90 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~-~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~~~ 168 (591)
T PRK07057 90 IEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYG-EKPVQRACAAADRTGHALLHTLYQQNVAAKTQFFVE 168 (591)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCcccccc-CCccceeeecCCCChHHHHHHHHHHHHhcCCEEEeC
Confidence 9999999999999999999999988888776666777764321 112357777788899999999999999999999999
Q ss_pred EEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccccccc
Q 046556 205 YFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHP 284 (633)
Q Consensus 205 ~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p 284 (633)
+.+++|+.+++|+|+||.+.+..+|+...+.|+.|||||||++++|..++++..+||||+.||+++||.+.+|||+||||
T Consensus 169 ~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~~p 248 (591)
T PRK07057 169 WMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRIFAASTNAFINTGDGLGMAARAGIPLQDMEFWQFHP 248 (591)
T ss_pred cEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccccCCcCCCCCcCcHHHHHHHHcCCCeeCcccccccC
Confidence 99999998556899999998767888888999999999999999999888889999999999999999999999999999
Q ss_pred ccccCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCChhHH
Q 046556 285 TGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVL 364 (633)
Q Consensus 285 ~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l 364 (633)
+.+...++++ ++.+++.|+++||.+|+||+++|+|...++.+|+++++++..++.+++|..+....+|+|.++++++.+
T Consensus 249 t~~~~~~~l~-~e~~rg~g~ilvn~~GeRF~~~~~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~~~v~lD~~~~~~~~~ 327 (591)
T PRK07057 249 TGVAGAGVLI-TEGVRGEGGILRNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPNGDHVLLDLTHLGAETI 327 (591)
T ss_pred CccCCCceEE-eecccCCceEEECCCCCCchhhcCccccccccHHHHHHHHHHHHHhcCCcCCCCCEEEEeCCCCCHHHH
Confidence 9877666666 888999999999999999999999877789999999999999999887764334469999999998888
Q ss_pred HHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChh
Q 046556 365 KERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGAN 444 (633)
Q Consensus 365 ~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~ 444 (633)
.++++.+.+.+..+.++||.++|+||.|.+||++|||.||.+++|++..+ .++|+||||||||||+|+++||+||||||
T Consensus 328 ~~~~~~i~e~~~~~~~~d~~~~pi~v~p~~h~t~GGi~vd~~g~~~~~~~-~~g~~IpGLyAaGE~a~~g~hGanrl~gn 406 (591)
T PRK07057 328 MKRLPSIREIALKFANVDCIKEPIPVVPTIHYQMGGIPTNIHGQVVGTSR-DHKEPVNGFYAIGECSCVSVHGANRLGTN 406 (591)
T ss_pred HHHccHHHHHHHHhcCCCCCCCCeeeehhHheeCCCeeECCCCcEecccc-CCCCeeCCeEeCccccccCCCccccchhh
Confidence 88899888887765679999999999999999999999999999986311 24589999999999997789999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHHHHH
Q 046556 445 SLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEG 524 (633)
Q Consensus 445 ~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l~~~ 524 (633)
+|++|+|||++||++|+++++........+....+...+.+..+....++.+|.+++++||++||+|+|++|++++|++|
T Consensus 407 sl~~~~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~a 486 (591)
T PRK07057 407 SLLDLVVFGRAAGNHIVDHVKKQHEHKPLPADAADFSLARLAKLDKSTSGEYAQDVANDIRATMQKHAGVFRTQALLDEG 486 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcchhhhhhHHHHHHHhhhhccccccCHHHHHHHHHHHHHhcCCeEECHHHHHHH
Confidence 99999999999999999886432111122211112222233333333334568899999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEEEeeC
Q 046556 525 CQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWEN 604 (633)
Q Consensus 525 l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~~~ 604 (633)
|++|++|++++..+.+.+.+..+|.+|++++|++|||++|+++++|||+|+||||+|||+|||++||++|+++++...+
T Consensus 487 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~- 565 (591)
T PRK07057 487 VEQILALAERVENIHLKDKSKVFNTARVEALEVANLIEVARATMVSAAARKESRGAHAHSDYEHRDDENWLKHTLWYSE- 565 (591)
T ss_pred HHHHHHHHHHHHHhccCCccchhchhhHHHHHHHhHHHHHHHHHHHHHhCCCCccccCCCCCCCCCchhhcceEEEecC-
Confidence 9999999998888877887778888999999999999999999999999999999999999999999999999875543
Q ss_pred CeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 605 EKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 605 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
+. .+.++||...++. +..++|..|.|
T Consensus 566 ~~-~~~~~~~~~~~~~--~~~~~~~~r~~ 591 (591)
T PRK07057 566 GN-RLDYKPVQMKPLT--VESVPPKARTF 591 (591)
T ss_pred CC-cccccccccccce--eeeeCCCCCCC
Confidence 33 6777777643322 34589999987
No 9
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=2e-98 Score=765.26 Aligned_cols=499 Identities=38% Similarity=0.607 Sum_probs=440.0
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHHHHH
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYM 128 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~ 128 (633)
||+|||+|+|||++|+.|++. .+|+||.|+....++|.+++|||.+.+.. .|+++.|..|++.+|.++||++.++.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~--~Ds~~~Hv~DTL~AG~glcD~~aV~~i 85 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSE--DDSPELHVADTLAAGAGLCDEEAVEFI 85 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCC--CCCHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 899999999999999999998 99999999988789999999999999874 688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHh-CCCEEEEEEEE
Q 046556 129 CREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMK-HNTQFFVEYFA 207 (633)
Q Consensus 129 ~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~-~gv~i~~~~~v 207 (633)
+.+++.+++||..+|++|.++.+|.+....+|+|+. .|..|..+.+|+.++..|.+++++ .+|++++++.+
T Consensus 86 v~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~--------rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a 157 (518)
T COG0029 86 VSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSR--------RRILHAADATGKEIMTALLKKVRNRPNITVLEGAEA 157 (518)
T ss_pred HHhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCC--------ceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchh
Confidence 999999999999999999999999888888888876 499999999999999999999987 69999999999
Q ss_pred EEEEEccCC-cEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccccccccc
Q 046556 208 LDLIMNSDG-TCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTG 286 (633)
Q Consensus 208 ~~L~~d~~g-~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~ 286 (633)
.+|++ +++ .++|+.+.+. .++...|+|+.|||||||.+.+|..++|+..++|||++||+|+|+.+.||||+|||||.
T Consensus 158 ~~li~-~~~~~~~Gv~~~~~-~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~DlEFvQFHPT~ 235 (518)
T COG0029 158 LDLII-EDGIGVAGVLVLNR-NGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADLEFVQFHPTA 235 (518)
T ss_pred hhhhh-cCCceEeEEEEecC-CCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCccceeeccce
Confidence 99999 566 5669999763 23677899999999999999999999999999999999999999999999999999998
Q ss_pred ccCC---cceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCChhH
Q 046556 287 IYGA---GCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDV 363 (633)
Q Consensus 287 ~~~~---~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~ 363 (633)
++.. .+|+ +|++||+|++++|.+|+|||..|+|. .||+|||+++|+|+.|++++.. .||+|+++++.+.
T Consensus 236 l~~~~~~~~Li-SEAVRGEGA~L~~~~GeRFm~~~~p~-~ELAPRDVVARAI~~e~~~~g~------~V~LD~s~~~~~~ 307 (518)
T COG0029 236 LYIPQRRAFLI-SEAVRGEGAILVNEDGERFMPDYHPR-GELAPRDVVARAIDAEMKRGGA------DVFLDISHIPGDF 307 (518)
T ss_pred ecCCCCcccee-ehhhhcCccEEECCCCCccccCCCCc-cccchHHHHHHHHHHHHHhcCC------eEEEeccCCCchh
Confidence 7654 2566 99999999999999999999999996 6999999999999999998643 2999999999999
Q ss_pred HHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCCh
Q 046556 364 LKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGA 443 (633)
Q Consensus 364 l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg 443 (633)
++++||.+...|.. .|+||.++||||.|++||+||||.||.+|+ |+||||||+|||+|+|+||||||++
T Consensus 308 ~~~rFP~I~~~c~~-~GiD~~r~~IPV~PaaHY~mGGI~vD~~Gr----------Tsi~gLYAiGEvA~TGlHGANRLAS 376 (518)
T COG0029 308 FERRFPTIYAACLK-AGIDPTREPIPVVPAAHYTMGGIAVDANGR----------TSIPGLYAIGEVACTGLHGANRLAS 376 (518)
T ss_pred hhhhCcHHHHHHHH-cCCCcccCccCccchhheecccEEECCCCc----------ccCcccEEeeeecccccccchhhhh
Confidence 99999999999985 899999999999999999999999999998 9999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCC-CCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHHH
Q 046556 444 NSLLDIVVFGRACANRVAEIQRPGE-KQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLE 522 (633)
Q Consensus 444 ~~l~~a~~~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l~ 522 (633)
|||+||+|||+.||++|+....... .....+... .......+..-+++||++||+|+||+|+.++|+
T Consensus 377 NSLLE~vV~g~~aA~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~Lr~~m~~~~GI~R~~~~L~ 444 (518)
T COG0029 377 NSLLECLVFGKRAAEDIAGRLAPAPREAPTLPVRD------------DYEENVLLAHDRHELRRLMWRYVGIVRTAKGLE 444 (518)
T ss_pred hhHHHHHHHHHHHHHHhhcccccCccCCCCCCccc------------ccccccccccCHHHHHHHHHhhcceEechHHHH
Confidence 9999999999999999987653322 111111100 000011122346889999999999999999999
Q ss_pred HHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEEEe
Q 046556 523 EGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYW 602 (633)
Q Consensus 523 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~ 602 (633)
+++.+|+.++.+.... .+ .+.. -+|++++|++|+.+||+|+||||+|||.|||.+.+ .|...++++.
T Consensus 445 ~~~~~l~~~~~~~~~~--~~------~~~~----~~nl~~vA~li~~~Al~R~ESRG~H~r~D~P~~~~-~~~~~~~~~~ 511 (518)
T COG0029 445 RAIRRLEPLQQENDEY--AN------FRVS----NRNLALVALLIARAALLRTESRGAHFRLDYPDTLP-EAQRRILVTL 511 (518)
T ss_pred HHHHHHHhhhhhhhhc--cc------cccc----ccCHHHHHHHHHHHHHhccccccceecccCCCcCc-cccCceEEec
Confidence 9999999998875443 11 1111 18999999999999999999999999999999987 5888887765
Q ss_pred eC
Q 046556 603 EN 604 (633)
Q Consensus 603 ~~ 604 (633)
.+
T Consensus 512 ~~ 513 (518)
T COG0029 512 ND 513 (518)
T ss_pred cc
Confidence 53
No 10
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=5.9e-97 Score=822.15 Aligned_cols=566 Identities=45% Similarity=0.773 Sum_probs=493.8
Q ss_pred ccccEEEECCchHHHHHHHHHHhCC--CcEEEEeecCCCCCcccccccceeeecCCC-CcCCHHHHHHHHHhcCCCCCCH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHG--FNTACITKLFPTRSHTVAAQGGINAALGNM-TEDDWRWHMYDTVKGSDWLGDQ 122 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G--~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~-~~d~~~~~~~d~~~~~~~~~~~ 122 (633)
.++||||||||+|||+||++|++.| ++|+||||....+|++..++||+.+..... ..|+++.++.|+++.+.+++++
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCH
Confidence 4689999999999999999999874 899999999887888888999987765433 3588999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEE
Q 046556 123 DAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFF 202 (633)
Q Consensus 123 ~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~ 202 (633)
++++.+++++++.++||+++|++|.+.++|.+....+++++. .|.++..+.+|..++..|.+.+++.||+++
T Consensus 82 ~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~tG~~i~~~L~~~~~~~gi~i~ 153 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSH--------NRTCYAADKTGHAILHELVNNLRRYGVTIY 153 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeecccccccc--------CeeEecCCCChHHHHHHHHHHHhhCCCEEE
Confidence 999999999999999999999999988888766555666554 477788888999999999999999999999
Q ss_pred EEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccccc
Q 046556 203 VEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQF 282 (633)
Q Consensus 203 ~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~ 282 (633)
+++.|++|+. ++++|+|+++.+..+|+...+.|+.|||||||+++.|..++++..+||||+.||+++|+.+.+|||+||
T Consensus 154 ~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me~~qf 232 (575)
T PRK05945 154 DEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRVFNTTSNDYASTGDGLAMTAIAGLPLEDMEFVQF 232 (575)
T ss_pred eCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCCcceEE
Confidence 9999999998 678999999877678887789999999999999999988888889999999999999999999999999
Q ss_pred ccccccCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCC----CCeEEEecCC
Q 046556 283 HPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPL----KDHIYLHLNH 358 (633)
Q Consensus 283 ~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~----~~~v~~d~~~ 358 (633)
||+.+.+.+.++ ++.++++|+++||.+|+||+++|+|...++.+|+++++++..++.+++|+.+. ...+|+|+++
T Consensus 233 ~pt~~~~~~~l~-~~~~rg~g~~lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~~~~~g~g~~~~~~~~~~~v~ld~~~ 311 (575)
T PRK05945 233 HPTGLYPVGVLI-SEAVRGEGAYLINSEGDRFMADYAPSRMELAPRDITSRAITLEIRAGRGINPDGSAGGPFVYLDLRH 311 (575)
T ss_pred eeeeecCCCeEE-eeecccCceEEECCCCCCcccccCccccccCchhHHHHHHHHHHHhcCCCCCcccCCCCEEEEECCC
Confidence 999887777666 88889999999999999999999998779999999999999999888886321 2359999999
Q ss_pred CChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCC
Q 046556 359 LPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGA 438 (633)
Q Consensus 359 ~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga 438 (633)
++++.+.++++...+.+....|+|+.++|+||.|..||++|||.||.+++|++. ++|+||||||||||+|+++||+
T Consensus 312 ~~~~~~~~~~~~~~~~l~~~~gid~~~~~i~v~p~~h~t~GGi~vd~~~~~~~~----~~t~I~GLyAaGE~a~~g~hGa 387 (575)
T PRK05945 312 MGKEKIMSRVPFCWEEAHRLVGVDAVTEPMPVRPTVHYCMGGIPVNTDGRVRRS----ADGLVEGFFAAGECACVSVHGA 387 (575)
T ss_pred CCHHHHHHHhHHHHHHHHHHhCcCCCCceEEeeccceecCCCeeECCCceeccC----CCCccCCeEeeecccccccccc
Confidence 998888788876666665568999999999999999999999999999999875 5599999999999997799999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc-hhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeC
Q 046556 439 NRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENN-AGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRT 517 (633)
Q Consensus 439 ~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~ 517 (633)
||||||+|++|+|||++||++|+++++... ....+.. ...+..+.+..++..++..++.+++++||++||+|+|++|+
T Consensus 388 nrlggnsl~~~~v~G~~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~ 466 (575)
T PRK05945 388 NRLGSNSLLECVVYGRRTGAAIAEYVQGRK-LPEVDEQRYLKEAKQRIQALLDQSGTYRINQLRQQFQDCMTDHCGVFRT 466 (575)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhccC-CCCcchhhHHHHHHHHHhhhhccccccChHHHHHHHHHHHHcCccEEEC
Confidence 999999999999999999999998875421 1111111 11233344455444445567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccce
Q 046556 518 QETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKH 597 (633)
Q Consensus 518 ~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~ 597 (633)
+++|++|+++|++|+++++++.+.+....+|++|++++|++|||++|+++++|||+|+||||+|||+|||++||++|++|
T Consensus 467 ~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~ 546 (575)
T PRK05945 467 EEIMQEGLEKIQQLKQQYEQIYLDDKGKCWNTELIEALELRSLMVVGEIILTSALNRQESRGAHSREDYPQRDDQNFLKH 546 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccChhHHHHHHHHhHHHHHHHHHHHHHhCCCcccccccCCCCcCCchhhhce
Confidence 99999999999999999988888887777899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 598 TLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 598 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
+++++.++.+++.++|+.++ .++|..|.|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 575 (575)
T PRK05945 547 TLAYYSPAGIDIQYMPVVIT-------MFEPQERKY 575 (575)
T ss_pred EEEEecCCCceEEeecceee-------eeCCCCCCC
Confidence 98887777889999988643 478888887
No 11
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=100.00 E-value=9.7e-97 Score=816.39 Aligned_cols=559 Identities=43% Similarity=0.703 Sum_probs=486.6
Q ss_pred ccccEEEECCchHHHHHHHHHHhC--CCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
.++||||||||+|||+||+.|+++ |++|+||||....++++.+++||+++..+ ..|+++.|+.|+++.+.+++|++
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~--~~ds~e~~~~dt~~~g~~~~d~~ 79 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTG--DDDSLDEHFHDTVSGGDWLCEQD 79 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcC--CCCCHHHHHHHHHHhcCCcCcHH
Confidence 468999999999999999999987 58999999998888888888898876654 47899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC-CCEEE
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH-NTQFF 202 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~-gv~i~ 202 (633)
+++.+++++++.++||+++|++|.+.++|.+....+++++. .|.++..+.+|..++..|.+++.+. +|+++
T Consensus 80 lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~ 151 (580)
T TIGR01176 80 VVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKK--------ERTWFAADKTGFHMLHTLFQTSLTYPQIMRY 151 (580)
T ss_pred HHHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccC--------CeeeecCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999998888776666676654 4888888889999999999988764 89999
Q ss_pred EEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccccc
Q 046556 203 VEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQF 282 (633)
Q Consensus 203 ~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~ 282 (633)
.++.+++|+. ++++|+||++.+..+|+...|.|+.||+||||++++|..+++++.+||||+.||+++||.+.+|||+||
T Consensus 152 ~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~ 230 (580)
T TIGR01176 152 DEWFVTDLLV-DDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRVYPFNTNGGIVTGDGMAMAFRHGVPLRDMEFVQY 230 (580)
T ss_pred eCeEEEEEEe-eCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcccccCCCCCCCcCcHHHHHHHHcCCCccCCcceEE
Confidence 9999999999 578999999987778888889999999999999999988888899999999999999999999999999
Q ss_pred ccccccCCcceeeeccccCCCcEEECCCCCccccccC---------Cc--cccccchhHHhHHHHHHHHhcCCCC-CCCC
Q 046556 283 HPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYA---------PT--AKDLASRDVVSRSMTMEIREGRGVG-PLKD 350 (633)
Q Consensus 283 ~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~---------~~--~~~l~~r~~~~~~i~~e~~~g~g~~-~~~~ 350 (633)
||+.+...++++ ++++++.|++++|.+|+|||++|+ |. ..++.+||+++++++.++.+|+++. +.+.
T Consensus 231 hPt~~~~~~~l~-~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~~l~~rd~v~~ai~~e~~~g~~~~~~~g~ 309 (580)
T TIGR01176 231 HPTGLPGTGILM-TEGCRGEGGILVNKDGYRYLQDYGMGPETPVGEPKNKYMELGPRDKVSQAFWHEHNKGNTIDTPYGD 309 (580)
T ss_pred EccccCCCceEE-eecccCCceEEECCCCCCcccccccccccccccccchhhhcchhHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999876666676 889999999999999999999985 32 2588999999999999999987653 2233
Q ss_pred eEEEecCCCChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeeccc
Q 046556 351 HIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEA 430 (633)
Q Consensus 351 ~v~~d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~ 430 (633)
.||+|+++++++.+.++++.+...+..+.|+||.++++||.|++||++|||.||.+++ |+||||||||||
T Consensus 310 ~v~ld~~~~~~~~~~~~~~~~~~~~~~~~gid~~~~~i~v~p~~h~~~GGi~~d~~~~----------t~i~GLyAaGe~ 379 (580)
T TIGR01176 310 VVYLDLRHLGEDLLDERLPFICELAKAYVHVDPVKEPIPVRPTVHYTMGGIETDINCE----------TRIKGLFAVGEC 379 (580)
T ss_pred EEEEEcCCCCHHHHHHHhhHHHHHHHHHcCCCCCCCeEEEehHHhccCCCeeECcCcc----------cccCCeEeeecc
Confidence 6999999999999999999988887766799999999999999999999999999987 999999999999
Q ss_pred ccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCC-CCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhh
Q 046556 431 ACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQ-KPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQ 509 (633)
Q Consensus 431 a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 509 (633)
+|+|+||+||||||+|++|+|||++||++|++++...... ..............+..++..++..++.+++++||++||
T Consensus 380 a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 459 (580)
T TIGR01176 380 ASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAARHQKSNESAIRAQARTVELRLERLLSQHGGENWADIRAEMGATME 459 (580)
T ss_pred cccCcCCCccccchhHHHHHHHHHHHHHHHHHhhccccccCccchhhhHHHHHHHHHHHhhccCcccHHHHHHHHHHHHH
Confidence 8779999999999999999999999999999986542111 111111112222334444444444678899999999999
Q ss_pred ccceEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCC--C
Q 046556 510 NNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDF--T 587 (633)
Q Consensus 510 ~~~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~--P 587 (633)
+|+|++|++++|+.+|.+|++|+++++.+.+.+....||++|++++|++|||++|+++++|||+||||||+|||+|| |
T Consensus 460 ~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P 539 (580)
T TIGR01176 460 SGCGIYRDGPLMQKTIDKLAELQERFKRAGIDDHSRVFNTDLLYLIELGGGLDVAEAMVHSALRRKESRGAHQRLDEGCT 539 (580)
T ss_pred hcccEEECHHHHHHHHHHHHHHHHHHHHhccCccccccchhHHHHHHHHhHHHHHHHHHHHHHhcccccccccccccCCc
Confidence 99999999999999999999999999888877766778999999999999999999999999999999999999999 9
Q ss_pred CCCcccccceEEEEee-CCeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 588 KRDDENWMKHTLGYWE-NEKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 588 ~~d~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
++||++|+||++.++. ++++.+.++|+.+ ..++|..|.|
T Consensus 540 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~p~~r~y 579 (580)
T TIGR01176 540 ERDDVHFLKHTLAFRESDGTLRVGYSPVKI-------TRWPPGERVY 579 (580)
T ss_pred ccCchhhcceEEEEecCCCcceeeecCccc-------ceeCCCCCCC
Confidence 9999999999987655 4678888888754 3588888887
No 12
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=3.8e-96 Score=815.05 Aligned_cols=559 Identities=33% Similarity=0.492 Sum_probs=476.7
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCC-CcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM-TEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~-~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
.+||||||+|+|||+||+.|+++|++|+||||....+|++..++||+++..+.. ..|+++.|+.|+++.+.++++++++
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 82 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPPV 82 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 469999999999999999999999999999999888889999999998776532 4688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCC----CEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHN----TQF 201 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~g----v~i 201 (633)
+.+++++++.++||+++|++|.+..+|.+....+++++. +|.++..+.+|..++..|.+.+++.+ |++
T Consensus 83 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i 154 (589)
T PRK08641 83 KAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLH--------HRTAFAGATTGQQLLYALDEQVRRYEVAGLVTK 154 (589)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeec--------ccccccCCCcHHHHHHHHHHHHHhhhccCCcEE
Confidence 999999999999999999999988777666555666554 36666677889999999988877643 889
Q ss_pred EEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccc
Q 046556 202 FVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQ 281 (633)
Q Consensus 202 ~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~ 281 (633)
++++.+++|+++++|+|+||++.+..+++...|.|+.|||||||++++|..+++++.+||||++||+++||.+.||||+|
T Consensus 155 ~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~y~~tt~~~~~tGdG~~mA~~aGA~l~~mef~q 234 (589)
T PRK08641 155 YEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGIIFGKSTNSTINTGSAASRVYQQGAYYANGEFIQ 234 (589)
T ss_pred EeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCchHHHHHHHHcCCCCcCCccEE
Confidence 99999999998557899999998866788888999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCc--ceeeeccccCCCcE-EECCCCCc--cccccCCccccccchhHHhHHHHHHH-HhcCCCCCCCCeEEEe
Q 046556 282 FHPTGIYGAG--CLLLKVGSRGEGGI-LRNSEGER--FMERYAPTAKDLASRDVVSRSMTMEI-REGRGVGPLKDHIYLH 355 (633)
Q Consensus 282 ~~p~~~~~~~--~~~~~~~~~g~g~~-~vn~~G~r--f~~~~~~~~~~l~~r~~~~~~i~~e~-~~g~g~~~~~~~v~~d 355 (633)
|||+.+.+.+ .++ ++++++.|+. ++|.+|+| ||+++.|...++.+||++++++..++ .+++++ +..+.+|+|
T Consensus 235 ~hPt~~~~~~~~~l~-~e~~rg~G~~l~~n~~G~Rf~f~~e~~~~~~~l~~rd~v~~ai~~~~~~~~~g~-~g~~~v~ld 312 (589)
T PRK08641 235 IHPTAIPGDDKLRLM-SESARGEGGRVWTYKDGKPWYFLEEKYPAYGNLVPRDIATREIFDVCVEQKLGI-NGENMVYLD 312 (589)
T ss_pred EeeeeecCCCcceEe-eeeeccCCcEEEECCCCCCcccccccCCcccccCChhHHHHHHHHHHHHhcCCC-CCCceEEEE
Confidence 9999876643 355 8899999875 56899999 67776676678999999999999877 455553 122459999
Q ss_pred cCCCChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccc
Q 046556 356 LNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASV 435 (633)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~ 435 (633)
+++.+.+.|+++++.+.+.+..+.|+|+.++||||.|++||+||||.||.+++ |+||||||||||+ +|+
T Consensus 313 ~~~~~~e~l~~~~~~~~~~~~~~~g~D~~~~~i~v~p~~h~~~GGi~vd~~~~----------t~I~GLyAaGE~~-~g~ 381 (589)
T PRK08641 313 LSHKDPKELDIKLGGILEIYEKFTGDDPRKVPMKIFPAVHYSMGGLWVDYDQM----------TNIPGLFAAGECD-YSY 381 (589)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCceeeehHHheeCCCeEECCCCC----------eECCCEEECcccc-cCC
Confidence 99999999999999888877766799999999999999999999999999876 9999999999997 689
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCC-CCCCcc----chhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhc
Q 046556 436 HGANRLGANSLLDIVVFGRACANRVAEIQRPGEK-QKPLEN----NAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQN 510 (633)
Q Consensus 436 ~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 510 (633)
||+||||||||++|+|||++||++|+++++.... ....+. ....+....+..+...++..++..++++||++||+
T Consensus 382 hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 461 (589)
T PRK08641 382 HGANRLGANSLLSAIYGGMVAGPNAVEYIKGLGKSADDVSSSVFEQALKQEQEKFDNILSMDGTENAYVLHKELGEWMTD 461 (589)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988653210 011111 11112223333333333345678899999999999
Q ss_pred cceEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCC
Q 046556 511 NAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRD 590 (633)
Q Consensus 511 ~~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d 590 (633)
|+||+|++++|++||++|++|+++++++.+.+.+..+|++|++++|++|||++|+++++|||+|+||||+|||+|||++|
T Consensus 462 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aal~R~ESRG~H~R~D~P~~~ 541 (589)
T PRK08641 462 NVTVVRENDKLLETDEKIQELMERYKRISVNDTSRWSNQGASFTRQLWNMLELARVITIGALNRNESRGAHYKPEFPERN 541 (589)
T ss_pred CCCEEECHHHHHHHHHHHHHHHHHHHhcCcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCccC
Confidence 99999999999999999999999888888878777889999999999999999999999999999999999999999999
Q ss_pred cccccceEEEEee--CCeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 591 DENWMKHTLGYWE--NEKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 591 ~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
|++|+|+++..+. +++.+++++||.+ +.++|..|.|
T Consensus 542 d~~~~~~~~~~~~~~~~~~~~~~~~v~~-------~~~~~~~~~~ 579 (589)
T PRK08641 542 DENWLKTTMATYTPEGEEPEFSYEDVDT-------SLIPPRKRDY 579 (589)
T ss_pred chhhhceEEEEecCCCCCceEEeecccc-------ceeCCccccC
Confidence 9999999987544 3477999999963 3577777776
No 13
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=100.00 E-value=1.1e-95 Score=811.60 Aligned_cols=557 Identities=31% Similarity=0.461 Sum_probs=477.3
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeecC-CCCCcccccccceeeecCCC-CcCCHHHHHHHHHhcCCCCCCHHHHHH
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKLF-PTRSHTVAAQGGINAALGNM-TEDDWRWHMYDTVKGSDWLGDQDAIQY 127 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~-~~~g~t~~~~Gg~~~~~~~~-~~d~~~~~~~d~~~~~~~~~~~~~v~~ 127 (633)
|||||+|+|||+||+.|++.|++|+||||.. ..+|++.+++||+++..+.. ..|+++.++.|+++.+.+++|+++++.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~ 80 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVKR 80 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 7999999999999999999999999999987 55677888888887655432 457889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC----CCEEEE
Q 046556 128 MCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH----NTQFFV 203 (633)
Q Consensus 128 ~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~----gv~i~~ 203 (633)
+++++++.++||+++|++|....++.+....+++++. +|.++..+.+|..++..|.+.+++. ||++++
T Consensus 81 l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~ 152 (603)
T TIGR01811 81 LAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQV--------SRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYE 152 (603)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCccccccccCccc--------CcceecCCCChhHHHHHHHHHHHhhhccCCcEEEe
Confidence 9999999999999999999887777655555565543 4777777778888888887766543 899999
Q ss_pred EEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccccc
Q 046556 204 EYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFH 283 (633)
Q Consensus 204 ~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~ 283 (633)
++.+++|+++++++|+||.+.+..+|+...|.||.|||||||++++|..+++++++||||+.||+++||.+.||||+|||
T Consensus 153 ~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~~t~~~~~tGdGi~mA~~aGa~l~~me~vq~~ 232 (603)
T TIGR01811 153 GWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNVFGKSTNAMNSNASAAWRAYEQGAYFANPEFIQIH 232 (603)
T ss_pred CcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCcCCccCCCCCcCcHHHHHHHHcCCCCcCCcceEEE
Confidence 99999999855679999999876678877899999999999999999999999999999999999999999999999999
Q ss_pred cccccCCc------ceeeeccccCCCcEEECC------------CCCc--cccccCCccccccchhHHhHHHHHHHHhcC
Q 046556 284 PTGIYGAG------CLLLKVGSRGEGGILRNS------------EGER--FMERYAPTAKDLASRDVVSRSMTMEIREGR 343 (633)
Q Consensus 284 p~~~~~~~------~~~~~~~~~g~g~~~vn~------------~G~r--f~~~~~~~~~~l~~r~~~~~~i~~e~~~g~ 343 (633)
|+.+...+ +++ +++++++|++++|. +|+| ||.++.|...++++||+++++|+.++++|+
T Consensus 233 Pt~~~~~g~~~~~~~li-~ea~rgeg~ilvn~~~~~~~~~~~~~~g~r~~f~~~~~~~~~~la~rd~vs~ai~~~~~~g~ 311 (603)
T TIGR01811 233 PTAIPVDGTWQSKLRLM-SESLRNDGRIWTPKEKNDNRDPNTIPEDKRDYFLERRYPAFGNLVPRDIASRAIFQVCDAGK 311 (603)
T ss_pred eeeecCCCcccccceEe-eeeeccCCcEEECccccccccccccccCchhhhhhhhcccccccCchHHHHHHHHHHHHhcC
Confidence 99775532 355 89999999999999 9999 888766655799999999999999999998
Q ss_pred CCCCCCCeEEEecCCCCh----hHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCC
Q 046556 344 GVGPLKDHIYLHLNHLPP----DVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDE 419 (633)
Q Consensus 344 g~~~~~~~v~~d~~~~~~----~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T 419 (633)
|+.+..++||+|+++++. +.+++++|.+.+.+..+.|+||.++||||.|++||+||||.+|.+++ |
T Consensus 312 g~~~~~~~v~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~i~v~p~~H~~~gG~~~d~~~~----------t 381 (603)
T TIGR01811 312 GVGPGENAVYLDFSDADERLGRKEIDAKYGNLFEMYEKFTGDDPYKVPMRIFPAVHYTMGGLWVDYDQM----------T 381 (603)
T ss_pred CcCCCCCeEEEEcCCCcccccHHHHHHHhHHHHHHHHHhcCCCccCCeeeeecccceeCCCeeECCCCc----------c
Confidence 875445679999999988 88899999999888776899999999999999999999999999887 9
Q ss_pred cccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCC-CCCCCc------cchhhhHHHHHHHhhhcC
Q 046556 420 VVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGE-KQKPLE------NNAGERTVAWLDKIRNSN 492 (633)
Q Consensus 420 ~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~ 492 (633)
+||||||||||+ +++||+||||||+|++|+|||++||++|++++.... .....+ ....++..+.+..+...+
T Consensus 382 ~i~gL~a~Ge~~-~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (603)
T TIGR01811 382 NIPGLFAAGECD-FSQHGANRLGANSLLSAIADGYFALPFTIPNYLGPELSSEDMPEDAPEFQAALAEEQERFDRLLKMR 460 (603)
T ss_pred cCCCEEECcccc-cCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhhHHHHHHHHHHHHhhcc
Confidence 999999999997 689999999999999999999999999998753211 011111 111122233334444434
Q ss_pred CCCChHHHHHHHHHHhhccceEeeCHHHHHHHHHHHHHHHHHh-ccccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 046556 493 GSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESF-HDVKLTDRSLIWNTDLIETIELENLLINACITMHSA 571 (633)
Q Consensus 493 ~~~~~~~~~~~l~~~m~~~~~~~r~~~~l~~~l~~l~~l~~~~-~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~a 571 (633)
+..++.+++++||++||+|+|++|++++|++||++|++|++++ +.+.+.+.+..+|++|++++|++|||++|+++++||
T Consensus 461 ~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~l~~a~~i~~aa 540 (603)
T TIGR01811 461 GDENPYYLHRELGEIMTENCGVSRNNEKLLKTDEKIRELRERFWKNIDIPGTTKESNQVLEFARRVADYLELAELMCLDA 540 (603)
T ss_pred CCCCHHHHHHHHHHHHHcCeeEEECHHHHHHHHHHHHHHHHHHHHhcccCCccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457889999999999999999999999999999999999888 457777777788999999999999999999999999
Q ss_pred HhCcCCccccccCCCC------CCCcccccceEEEEee--CCeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 572 EARKESRGAHAREDFT------KRDDENWMKHTLGYWE--NEKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 572 l~R~ESRG~h~R~D~P------~~d~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
|+|+||||+|||+||| ++||++|++++++.++ +|+++++++||++ ..++|..|.|
T Consensus 541 l~R~ESRG~H~R~D~P~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 603 (603)
T TIGR01811 541 LNRNESCGAHFRPEFPTPDGEAERNDEEFLKVTAWEFQGENDAPEFHYEELDF-------ELVPPRKRDY 603 (603)
T ss_pred HhCcccccccccccCCCccccccCChhhhheeEEEEecCCCCCceEEeecccc-------ceeCCCCCCC
Confidence 9999999999999999 8888999999887654 3789999999964 4689999988
No 14
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.9e-95 Score=811.26 Aligned_cols=568 Identities=45% Similarity=0.733 Sum_probs=490.3
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCC---CcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCC
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHG---FNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLG 120 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G---~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~ 120 (633)
...++||||||||+|||+||+.|+++| ++|+||||....++++..++||+++.......|+++.++.|+++.+.+++
T Consensus 2 ~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~ 81 (577)
T PRK06069 2 EVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLA 81 (577)
T ss_pred CceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccC
Confidence 346799999999999999999999998 89999999988888899999999877654346899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHh-CCC
Q 046556 121 DQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMK-HNT 199 (633)
Q Consensus 121 ~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~-~gv 199 (633)
|+++++.+++++++.++||+++|++|.+.++|.+....+++++. +|..+..+.+|..++..|.+++.+ .||
T Consensus 82 d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~--------~r~~~~~d~tG~~i~~~L~~~~~~~~gv 153 (577)
T PRK06069 82 DQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSF--------PRTTFAADKTGFYIMHTLYSRALRFDNI 153 (577)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCccc--------ceeeEcCCCchHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999988888766655666544 477777888999999999998876 699
Q ss_pred EEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccc
Q 046556 200 QFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEF 279 (633)
Q Consensus 200 ~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~ 279 (633)
++++++.+++|+. ++++|+||.+.+..+|+...|.|+.|||||||++++|..++++..++|||+.||+++||.+.+|||
T Consensus 154 ~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdGi~mA~~aGa~l~~~e~ 232 (577)
T PRK06069 154 HFYDEHFVTSLIV-ENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEF 232 (577)
T ss_pred EEEECCEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCCCcCCCCCcCcHHHHHHHHcCCccCCCcc
Confidence 9999999999998 678999999887668877789999999999999999988888889999999999999999999999
Q ss_pred cccccccccCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCC--CeEEEecC
Q 046556 280 VQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLK--DHIYLHLN 357 (633)
Q Consensus 280 ~~~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~--~~v~~d~~ 357 (633)
+||||+.+.+.+.++ ++++++.|+++||.+|+||+++|+|...++.+|+++++++..++.+++|+.... ..+|+|.+
T Consensus 233 ~q~~pt~~~~~g~l~-~e~~~g~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~e~~~g~g~~~~~g~~~v~ld~~ 311 (577)
T PRK06069 233 VQFHPTGLVPSGILI-TEAARGEGGYLINKEGERFMKRYAPQKMELAPRDVVSRAIMTEIMEGRGFKHESGLCYVGLDLR 311 (577)
T ss_pred eeEeeeeeCCCCcEE-EeeccCCCeEEECCCCCCcccccCccccccCCccHHHHHHHHHHHhcCCccCCCCceEEEEecc
Confidence 999999887777776 889999999999999999999999988899999999999999998888763211 24899999
Q ss_pred CCChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccC
Q 046556 358 HLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHG 437 (633)
Q Consensus 358 ~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~G 437 (633)
+++++.+.++++.+.+.+..+.|+||.++++||.|..||++|||.||.++++.+. ++++||||||||||+|+++||
T Consensus 312 ~~~~~~~~~~~~~i~~~~~~~~g~D~~~~~i~v~p~~h~t~GGi~vd~~~~t~~~----~g~~I~GLyAaGE~a~~g~hG 387 (577)
T PRK06069 312 HLGEEKINERLPLIREIAKKYAGIDPVTEPIPVRPAAHYTMGGIHTDVYGRVLTA----DGEWVRGLWAAGEAAAVSVHG 387 (577)
T ss_pred cCCHHHHHHHhhHHHHHHHHHcCCCCCCCceeeeeccceeCCCceECCCCcCcCC----CCCEeCCeEeccccccccccc
Confidence 9998888999999888887667999999999999999999999999999998765 447899999999998778999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCcc-chhh-hHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEe
Q 046556 438 ANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLEN-NAGE-RTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVF 515 (633)
Q Consensus 438 a~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~ 515 (633)
+||||||+|++|+|||++||++|+++++... ..+.+. .... ...+.+.++...++..++.+++++||++||+|+|++
T Consensus 388 anrlggnsl~~~~v~Gr~Ag~~aa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~ 466 (577)
T PRK06069 388 ANRLGSNSTAECLVWGRIAGEQAAEYALKRP-APSSPVEKLAEKEEKRIFDKLLKKEGGEPSYEIRRELNDIMDKNFGIF 466 (577)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhccC-CCCCcchhhhhHHHHHHHhhhhhccCCCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999875321 111111 1111 111112333333344568899999999999999999
Q ss_pred eCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCccccc
Q 046556 516 RTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWM 595 (633)
Q Consensus 516 r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~ 595 (633)
|++++|+.||.+|++|++++.++.+.+....+|++|++++|++||+++|+++++|||+|+||||+|||+|||++||++|.
T Consensus 467 R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~~~ 546 (577)
T PRK06069 467 RDESGLAEALKKIKKLRERYKNVRIEDKSRIYNTDLKDALELDGMLDLAEVVAIGALLRTESRGAHYRLDYPKRDDENWL 546 (577)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCCccCchhhh
Confidence 99999999999999999988888887877778999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeCCeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 596 KHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 596 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
+++++++.++..++.++++++ +.++|..|.|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 577 (577)
T PRK06069 547 KHTLAYYTGGGPKVTYTPVTI-------TKWKPEERKY 577 (577)
T ss_pred ceEEEEEcCCCceeeecCccc-------cccCCCCCCC
Confidence 999887642235677776543 3588888887
No 15
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=2e-95 Score=808.16 Aligned_cols=559 Identities=43% Similarity=0.714 Sum_probs=485.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhC--CCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
.++||||||+|+|||+||+.|++. |++|+||||....+|++..++||+++..+ ..|+++.|+.|+++.+.+++|++
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~--~~ds~e~~~~d~~~~g~~~~d~~ 80 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQ--DHDSFDYHFHDTVAGGDWLCEQD 80 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcC--CCCCHHHHHHHHHHhcccCCCHH
Confidence 568999999999999999999987 47999999998888899889898887654 57889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC-CCEEE
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH-NTQFF 202 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~-gv~i~ 202 (633)
+++.+++++++.++||+++|++|.+.++|.+....+++++. .|.++..+.+|..+...|.+.+.+. +++++
T Consensus 81 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~ 152 (582)
T PRK09231 81 VVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKI--------ERTWFAADKTGFHMLHTLFQTSLKYPQIQRF 152 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccC--------CeeEecCCCcHHHHHHHHHHHhhcCCCcEEE
Confidence 99999999999999999999999988888765555666654 4777878888999999998888775 89999
Q ss_pred EEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccccc
Q 046556 203 VEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQF 282 (633)
Q Consensus 203 ~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~ 282 (633)
.++.+++|+. ++++|+||++.+..+|+...++|+.||+||||++++|..+++++.+||||+.||+++||.+.+|||+||
T Consensus 153 ~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~~~~t~~~~~tGdG~~mA~~aGA~l~~me~~q~ 231 (582)
T PRK09231 153 DEHFVLDILV-DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAYRHGVPLRDMEFVQY 231 (582)
T ss_pred eCeEEEEEEE-eCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCCCCCCCCCCCccHHHHHHHHcCCCccCccceee
Confidence 9999999998 679999999887678888889999999999999999988888889999999999999999999999999
Q ss_pred ccccccCCcceeeeccccCCCcEEECCCCCccccccC---------Cc--cccccchhHHhHHHHHHHHhcCCCCCC-CC
Q 046556 283 HPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYA---------PT--AKDLASRDVVSRSMTMEIREGRGVGPL-KD 350 (633)
Q Consensus 283 ~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~---------~~--~~~l~~r~~~~~~i~~e~~~g~g~~~~-~~ 350 (633)
||+.+...+.++ ++++++.|+++||.+|+||+++|+ |. ..++.+||+++++++.++.+++++... ..
T Consensus 232 ~Pt~~~~~~~l~-~e~~rg~g~~lvn~~G~RF~~~y~~~~~~~~~~p~~~~~el~~rd~v~~ai~~~~~~g~~~~~~~g~ 310 (582)
T PRK09231 232 HPTGLPGSGILM-TEGCRGEGGILVNKDGYRYLQDYGLGPETPLGEPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGD 310 (582)
T ss_pred ecceeCCCCcee-eecccCCCeEEECCCCCCchhccccccccccccccccccccccHHHHHHHHHHHHHhCCCccCCCCC
Confidence 999887667776 889999999999999999999884 32 248899999999999999888765321 23
Q ss_pred eEEEecCCCChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeeccc
Q 046556 351 HIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEA 430 (633)
Q Consensus 351 ~v~~d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~ 430 (633)
.||+|+++++++.+.++++.+.+.+..+.|+||.++++|+.|..||++|||.||.+++ |+||||||||||
T Consensus 311 ~v~ld~~~~~~~~~~~~~~~i~e~~~~~~G~d~~~~~i~v~p~~h~t~GGi~vd~~~~----------t~i~GLyAaGe~ 380 (582)
T PRK09231 311 VVYLDLRHLGEKKLHERLPFICELAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCE----------TRIKGLFAVGEC 380 (582)
T ss_pred EEEEECCcCCHHHHHHHhhHHHHHHHHHcCCCCCCCeeeeeceeeeeCCCEEECCCCc----------cccCCEEecccc
Confidence 6999999999999999999998888766799999999999999999999999999987 999999999999
Q ss_pred ccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCC-CCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhh
Q 046556 431 ACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQ-KPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQ 509 (633)
Q Consensus 431 a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 509 (633)
+|+++||+||+|||+|++|+|||++||++|+++++..... ........+...+.+..++..+++.+|.+++++||++||
T Consensus 381 ~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 460 (582)
T PRK09231 381 SSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAATAGPGNEAALDAQAADVEQRLKALVNQEGGENWAKIRDEMGLSME 460 (582)
T ss_pred cccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhccCCccccchhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence 8668999999999999999999999999999987542211 111111112222334444444455678999999999999
Q ss_pred ccceEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCC--CC
Q 046556 510 NNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHARED--FT 587 (633)
Q Consensus 510 ~~~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D--~P 587 (633)
+++|++||+++|+++|.+|++|+++++.+.+.+.+..+|++|++++|++|||++|+++++|||+|+||||+|||+| ||
T Consensus 461 ~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~~~P 540 (582)
T PRK09231 461 EGCGIYRTPELMQKTIDKLAELKERFKRVRITDTSSVFNTDLLYTIELGYGLDVAECMAHSALARKESRGAHQRLDEGCT 540 (582)
T ss_pred hcCcEEECHHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccchhcccccCCC
Confidence 9999999999999999999999998888888887778899999999999999999999999999999999999999 99
Q ss_pred CCCcccccceEEEEee-CCeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 588 KRDDENWMKHTLGYWE-NEKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 588 ~~d~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
++||++|+||++..+. +|++.+.++|+.++ .++|..|.|
T Consensus 541 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~~r~~ 580 (582)
T PRK09231 541 ERDDVNFLKHTLAFYNADGTPRIEYSDVKIT-------KSPPAKRVY 580 (582)
T ss_pred ccChhhhceEEEEEecCCCCcceeecCcccc-------ccCCccCCC
Confidence 9999999999987544 67678888877543 488888887
No 16
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.4e-95 Score=807.65 Aligned_cols=569 Identities=54% Similarity=0.877 Sum_probs=493.6
Q ss_pred HHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCC-CCcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Q 046556 60 LRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN-MTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIE 138 (633)
Q Consensus 60 l~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~-~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~~~~ 138 (633)
|+||++|++.|++|+||||....+|+|..++||+++..+. .+.|+++.|+.|+++.+.+++|+++++.+++++++.++|
T Consensus 1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~~ 80 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE 80 (570)
T ss_pred ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999988899999999999877643 256889999999999999999999999999999999999
Q ss_pred HHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcE
Q 046556 139 LENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTC 218 (633)
Q Consensus 139 l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v 218 (633)
|+++|++|.+.++|.+....+++++..+..++..+|+++..+.+|..++..|.+.+++.||+++.++.+++|+.+++|+|
T Consensus 81 L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v 160 (570)
T PRK05675 81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAV 160 (570)
T ss_pred HHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeE
Confidence 99999999998888887777888876655555667999988999999999999999999999999999999998557899
Q ss_pred EEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccccccccccCCcceeeecc
Q 046556 219 QGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVG 298 (633)
Q Consensus 219 ~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~~~~~~~~~~~~ 298 (633)
+||++++..+|+...|+|++|||||||++++|..+++++.+||||+.||+++||.+.||||+||||+.+.+.+.++ +++
T Consensus 161 ~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~~~~~~~~~~~tGDG~~mA~~aGA~l~~me~~q~~Pt~~~~~~~l~-~e~ 239 (570)
T PRK05675 161 VGVIAICIETGETVYIKSKATVLATGGAGRIYASTTNALINTGDGVGMALRAGVPVQDIEMWQFHPTGIAGAGVLV-TEG 239 (570)
T ss_pred EEEEEEEcCCCcEEEEecCeEEECCCCcccccCCCCCCCCcCcHHHHHHHHcCCCeeCccceeeecceeCCCceEe-ecc
Confidence 9999988778998899999999999999999988899999999999999999999999999999999887777676 889
Q ss_pred ccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCChhHHHHHhHHHHHHHHHH
Q 046556 299 SRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIF 378 (633)
Q Consensus 299 ~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l~~~~~~~~~~~~~~ 378 (633)
+++.|++++|.+|+|||++|+|...++.+|++++++|..++.++++..+..+.+|+|+++++++.++++++.+...+..+
T Consensus 240 ~rg~g~~lvN~~GeRF~~~y~~~~~el~~rd~v~~ai~~ei~~~~g~~~~~~~v~ld~~~l~~~~l~~~~~~~~~~~~~~ 319 (570)
T PRK05675 240 CRGEGGYLINKHGERFMERYAPNAKDLAGRDVVARSMVKEILAGNGCGPNKDHVLLKLDHLGEEVLHSRLPGICELSKTF 319 (570)
T ss_pred ccCCCcEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCccCCCCEEEEEcCCCCHHHHHHhccHHHHHHHHh
Confidence 99999999999999999999998778999999999999999988775444456999999999999999999988777766
Q ss_pred cCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHH
Q 046556 379 AGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACAN 458 (633)
Q Consensus 379 ~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~ 458 (633)
.++||.++|+||.|.+||+||||.||.++++++.|.++.+|+||||||||||+|+++||+||||||||++|+|||++||+
T Consensus 320 ~~~d~~~~~i~v~P~~h~t~GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~ 399 (570)
T PRK05675 320 AHVDPVVAPIPVVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGL 399 (570)
T ss_pred cCCCcCCCceEeehhHhccCCCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHH
Confidence 78999999999999999999999999999998765444568999999999999778999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHHHHHHHHHHHHHHHhccc
Q 046556 459 RVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDV 538 (633)
Q Consensus 459 ~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l~~~l~~l~~l~~~~~~~ 538 (633)
+|+++++........+........+.+..+...++..++.+++++||++||+|+||+|++++|++||.+|++|++++.++
T Consensus 400 ~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~ 479 (570)
T PRK05675 400 HLEKALKEGIEYRDASESDIDAALARLNKLNERTGGEDVAALRRELQSCMQNYFGVFRTGEYMQKGIAQLADLRERIANV 479 (570)
T ss_pred HHHHHHhcccccccCChHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHhhCCceecHHHHHHHHHHHHHHHHHHHhh
Confidence 99988653221112221122222333444444444567889999999999999999999999999999999999999888
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEEEeeCCeeEEeeeeccccc
Q 046556 539 KLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNT 618 (633)
Q Consensus 539 ~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 618 (633)
.+.+.+..+|.++++++|++|||++|+++++|||+|+||||+|||+|||++||++|+++++....+ + .+.++++...+
T Consensus 480 ~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~~ 557 (570)
T PRK05675 480 KINDKSQAFNTARIEALELQNLLEVAEATAIAAEVRKESRGAHAREDFEDRDDENWLCHTLYFPGE-K-RVGKRAVNFAP 557 (570)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCCCCCChhhhcceEEEeccC-C-ccceecccccc
Confidence 877777778889999999999999999999999999999999999999999999999999754332 2 34556665443
Q ss_pred cCCcccccCCCCCCC
Q 046556 619 LDDEIESFPPKARVY 633 (633)
Q Consensus 619 ~~~~~~~~~~~~~~~ 633 (633)
+ .+..++|..|.|
T Consensus 558 ~--~~~~~~~~~~~y 570 (570)
T PRK05675 558 K--TVPAFEPKVRTY 570 (570)
T ss_pred c--cccccCCCCCCC
Confidence 3 245699999988
No 17
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=2.2e-95 Score=813.27 Aligned_cols=560 Identities=29% Similarity=0.448 Sum_probs=471.9
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC-CCCcccccccceeeecCCC-CcCCHHHHHHHHHhcCCCCCCHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP-TRSHTVAAQGGINAALGNM-TEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~-~~g~t~~~~Gg~~~~~~~~-~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
.++||||||+|+|||+||+.|++.|++|+||||... .+|++..++||+++..+.. ..|+++.|+.|+++.+.++++++
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~~ 113 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRAREA 113 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCHH
Confidence 579999999999999999999999999999998644 4567888888887654322 46889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHH----HHHHHHHHhCCC
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALL----HTLYGQAMKHNT 199 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~----~~l~~~a~~~gv 199 (633)
+++.+++++++.++||+++|++|.+..++.+....+++++. +|.++..+.+|..++ ..|.+.+++.||
T Consensus 114 lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~--------~R~~~~~~~tG~~i~~~l~~~L~~~~~~~gV 185 (640)
T PRK07573 114 NVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQV--------SRTFYARGQTGQQLLLGAYQALSRQIAAGTV 185 (640)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCccc--------ceeEeCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999877666655555565543 477777777787776 556667778899
Q ss_pred EEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccc
Q 046556 200 QFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEF 279 (633)
Q Consensus 200 ~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~ 279 (633)
+|++++.+++|+. ++++|+||++.+..+|+...|.||.|||||||++++|..+++++.+||||+.||+++||.+.+|||
T Consensus 186 ~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~~~~tt~~~~~tGdGi~mA~~aGA~l~~me~ 264 (640)
T PRK07573 186 KMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGGYGNVFYLSTNAMGSNATAIWRAHKKGAYFANPCF 264 (640)
T ss_pred EEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccCCCCCCCCCCcCcHHHHHHHHcCCCccCccc
Confidence 9999999999998 578999999987667887789999999999999999998899999999999999999999999999
Q ss_pred cccccccccCCc------ceeeeccccCCCcEEECCCC------------Cc--cccccCCccccccchhHHhHHHHHHH
Q 046556 280 VQFHPTGIYGAG------CLLLKVGSRGEGGILRNSEG------------ER--FMERYAPTAKDLASRDVVSRSMTMEI 339 (633)
Q Consensus 280 ~~~~p~~~~~~~------~~~~~~~~~g~g~~~vn~~G------------~r--f~~~~~~~~~~l~~r~~~~~~i~~e~ 339 (633)
+||||+.+...+ .++ ++++++.|+++||.+| +| ||.+|.|...++++||+++++|+.|+
T Consensus 265 vq~hPt~~~~~g~~~~~~~li-~ea~rg~G~ilvn~~g~~~~~~~~~~~~~~~~f~~~~~~~~~el~~rd~v~rai~~e~ 343 (640)
T PRK07573 265 TQIHPTCIPVSGDYQSKLTLM-SESLRNDGRIWVPKKKGDKRKPNDIPEEERDYYLERRYPAFGNLVPRDVASRAAKERC 343 (640)
T ss_pred eeeccccccCCCcccccceEE-eccccCCceEEEcCcccccccccccccchhhhchhhhCccccCCCCcCHHHHHHHHHH
Confidence 999999765432 455 8999999999999984 56 99999988889999999999999999
Q ss_pred HhcCCCCCCCCeEEEecCC----CChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCC
Q 046556 340 REGRGVGPLKDHIYLHLNH----LPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGD 415 (633)
Q Consensus 340 ~~g~g~~~~~~~v~~d~~~----~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~ 415 (633)
++|+|+.+.+.+||+|+++ ++.+.+++++|.+.+.+..+.|+||.++||||.|++||+||||.||.+++
T Consensus 344 ~~grg~~~~~~~v~ld~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~d~~~~~i~v~p~~hy~~GGi~vd~~~~------- 416 (640)
T PRK07573 344 DAGRGVGPTGLGVYLDFADAIKRLGKDVIRERYGNLFDMYERITGENPYETPMRIYPAVHYTMGGLWVDYNLM------- 416 (640)
T ss_pred HhcCCCCCCCCEEEEeCchhhhhcCHHHHHHhChHHHHHHHHhcCCCcccCeeeeecccceecCCEEECCCCc-------
Confidence 9999874444579999985 57788999999998888766799999999999999999999999999987
Q ss_pred CCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHH-HHHHhCCCCCCCCC----c--cchhhhHHHHHHHh
Q 046556 416 DPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANR-VAEIQRPGEKQKPL----E--NNAGERTVAWLDKI 488 (633)
Q Consensus 416 ~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~-aa~~~~~~~~~~~~----~--~~~~~~~~~~~~~~ 488 (633)
|+||||||||||+ +++||+||||||||++|+|||++||++ |++++......... + ....++..+.+..+
T Consensus 417 ---T~i~GLyAaGE~~-~g~HGanRL~~nsL~e~lv~G~~ag~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (640)
T PRK07573 417 ---STIPGLFVIGEAN-FSDHGANRLGASALMQGLADGYFVLPYTIGNYLADTIGTPKVSTDHPEFKEAEAEVQDRIDRL 492 (640)
T ss_pred ---cccCCEEECcccc-ccCCCcccccchhHHHHHHHHHHHhHHHHHHHHHhhcccccCCccccchhhHHHHHHHHHHHH
Confidence 9999999999996 689999999999999999999999987 65665321111111 0 01112222333444
Q ss_pred hhcCCCCChHHHHHHHHHHhhccceEeeCHHHHHHHHHHHHHHHHHhc-cccccccccccchhhHHHHHHHHHHHHHHHH
Q 046556 489 RNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFH-DVKLTDRSLIWNTDLIETIELENLLINACIT 567 (633)
Q Consensus 489 ~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l~~~l~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~ 567 (633)
....++.+|.+++++||++||+|+|++||+++|++|+++|++|++++. .+.+.+....+|++|++++|++|||++|+++
T Consensus 493 ~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~A~~i 572 (640)
T PRK07573 493 LNIKGKRTVDSFHRELGKIMWDYCGMARNEEGLKKALEKIRALREEFWKNVRVPGSADELNQELEKAGRVADFLELGELM 572 (640)
T ss_pred hhccCCCCHHHHHHHHHHHHhcCccEEeCHHHHHHHHHHHHHHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 333344578899999999999999999999999999999999998874 4666665566789999999999999999999
Q ss_pred HHHHHhCcCCccccccCCCC------CCCcccccceEEEEee--CCeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 568 MHSAEARKESRGAHAREDFT------KRDDENWMKHTLGYWE--NEKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 568 ~~~al~R~ESRG~h~R~D~P------~~d~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
++|||+|+||||+|||+||| ++||++|.++++.+++ +|+++++++||.+ ..++|..|.|
T Consensus 573 ~~aAl~R~ESRG~H~R~D~P~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 639 (640)
T PRK07573 573 CRDALHREESCGGHFREEHQTEDGEALRDDENFAYVAAWEYKGDGKEPVLHKEPLEF-------ENVKLAQRSY 639 (640)
T ss_pred HHHHHhCcccccccCCccCCCCccccccChhhhceEEEEEecCCCCCceEEeecccc-------ceeCCCCCCC
Confidence 99999999999999999999 7888899988833323 3789999999863 4588999987
No 18
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=100.00 E-value=4.8e-94 Score=795.48 Aligned_cols=563 Identities=69% Similarity=1.126 Sum_probs=489.8
Q ss_pred HHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCCc
Q 046556 66 LSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLP 145 (633)
Q Consensus 66 aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~Gv~ 145 (633)
|++.|++|+||||....+|+|.+++||+++..+..+.|+++.|+.|+++.+.+++|+++++.+++++++.++||+++|++
T Consensus 1 ~a~~G~~VilveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~~~i~~L~~~Gv~ 80 (565)
T TIGR01816 1 LAKGGVNTACVTKLFPTRSHTVAAQGGISAALGNMEEDNWRWHMYDTVKGSDWLGDQDAIEYMCKQAPEAVLELEHMGMP 80 (565)
T ss_pred CCCCCCceEEEEcCCCCCccHHHhcchheeccCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 46789999999999988999999999999887655679999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEE
Q 046556 146 FSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALN 225 (633)
Q Consensus 146 f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~ 225 (633)
|.+..+|.+....+++++..++..+...|.++..+.+|..++..|.+++++.||+|++++.+++|+. ++|+|+||++++
T Consensus 81 f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~ 159 (565)
T TIGR01816 81 FSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYC 159 (565)
T ss_pred cccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEE
Confidence 9988888776666777765443333456888888889999999999999999999999999999999 589999999987
Q ss_pred cCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccccccccccCCcceeeeccccCCCcE
Q 046556 226 MEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGI 305 (633)
Q Consensus 226 ~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~g~~ 305 (633)
..+|+...|.|++|||||||++++|..+++++.+||||+.||+++||.+.||||+||||+.+.+.+.++ ++.+++.+++
T Consensus 160 ~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l~~me~~q~~pt~~~~~~~l~-~e~~r~~g~~ 238 (565)
T TIGR01816 160 LETGEIHRFRAKAVVLATGGYGRIYFSTTNAHTLTGDGTGMVTRAGLPLQDMEFVQFHPTGIAGAGCLI-TEGCRGEGGI 238 (565)
T ss_pred cCCCcEEEEEeCeEEECCCCccccCCCcCCCCCCccHHHHHHHHcCCcccCCcceEEccCcccCCceEE-eccccCCceE
Confidence 678988899999999999999999999999999999999999999999999999999998877666666 8889999999
Q ss_pred EECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCChhHHHHHhHHHHHHHHHHcCCCCCC
Q 046556 306 LRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTK 385 (633)
Q Consensus 306 ~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~~ 385 (633)
+||.+|+||+++|+|...++.+|+++++++..++.+++|+.+..+.+|+|+++++++.|+++++.+++.+..+.|+|+.+
T Consensus 239 lvn~~G~RF~~~y~~~~~el~~rd~v~~ai~~e~~~~~g~~~~~~~v~ld~~~~~~~~l~~~~~~~~~~~~~~~G~D~~~ 318 (565)
T TIGR01816 239 LINANGERFMERYAPTAKDLASRDVVSRSMTLEIREGRGVGPNKDHVYLDLDHLGPEVLEGRLPGISETARTFAGVDPVK 318 (565)
T ss_pred EECCCCCCCccccCccccccCchhHHHHHHHHHHHhcCCCCCCCCeEEEEccCCCHHHHHHHhhhHHHHHHHHcCCCCCC
Confidence 99999999999999987789999999999999998888764444569999999999999999999998887667999999
Q ss_pred CCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 046556 386 EPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQR 465 (633)
Q Consensus 386 ~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~ 465 (633)
+|+||.|.+||++|||.||.+++|++. .++++|+||||||||||+|+++||+||||||+|++|+|||++||++|+++++
T Consensus 319 ~~i~v~p~~h~t~GGi~id~~g~vl~~-~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 319 DPIPVLPTVHYNMGGIPTNYHGQVLRD-GNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred CcEEeeeeeeeecCCceeCCCceEccc-ccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999863 1224589999999999997799999999999999999999999999999875
Q ss_pred CCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHHHHHHHHHHHHHHHhcccccccccc
Q 046556 466 PGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSL 545 (633)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~ 545 (633)
......+.+.....+..+.+..+...+++.+|.+++++||++||+++|++|++++|+.++.+|++|+++++.+.+.+...
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~ 477 (565)
T TIGR01816 398 PGSDVKPMPPNAGEESVMRLDKLRFATGGERVAALRLELQRSMQNHAGVFRTGEVLQKGVEKISALKERYKNVKINDKSK 477 (565)
T ss_pred ccccccccccchhHHHHHHHHHHhhccCCCCHHHHHHHHHHHhhCCeeEEECHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 42211122222212222334444444445678899999999999999999999999999999999999888887777666
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEEEeeC--CeeEEeeeeccccccCCcc
Q 046556 546 IWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWEN--EKVRLDYRPVHMNTLDDEI 623 (633)
Q Consensus 546 ~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~ 623 (633)
.+|++|++++|++|||++|+++++|||+||||||+|||+|||++||++|+|+++++++. |++.++++|++..+.. +
T Consensus 478 ~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 555 (565)
T TIGR01816 478 VWNTDLVEALELQNLLECAEATAVSAEARKESRGAHAREDFPERDDENWLKHTLSYVDINTGKVLLSYKPVIFKPLT--V 555 (565)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCCCCCccccccEEEEEecCCCCcceEEeccccccccc--c
Confidence 78899999999999999999999999999999999999999999999999999887664 8899999999865332 2
Q ss_pred cccCCCCCCC
Q 046556 624 ESFPPKARVY 633 (633)
Q Consensus 624 ~~~~~~~~~~ 633 (633)
-.++|..|.|
T Consensus 556 ~~~~~~~~~~ 565 (565)
T TIGR01816 556 ADFEPKKRVY 565 (565)
T ss_pred cccCCCCCCC
Confidence 3588888887
No 19
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=2.4e-97 Score=757.01 Aligned_cols=591 Identities=77% Similarity=1.236 Sum_probs=560.7
Q ss_pred cccccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCC
Q 046556 41 YTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLG 120 (633)
Q Consensus 41 ~~~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~ 120 (633)
+...+..||.+|||+|.||+.+|+.+++.|.++.++.|..+..+++..++||+++.++++.+|+|.+|++|+.+.++|++
T Consensus 49 ~~~~~~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~ 128 (642)
T KOG2403|consen 49 YAQVDHTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLG 128 (642)
T ss_pred eeeeeeeceeEEEeccchhhhhhhhhhhcCceEEEEeccccccccchhhhhhhhhhhccCCCchhhhhhhhccccccccC
Confidence 33456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCE
Q 046556 121 DQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQ 200 (633)
Q Consensus 121 ~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~ 200 (633)
|++.+..+..+.+..+.+|+.+|.+|.+.++|++++..|++++..++++++..|++++.+++|+.+...|..+..+.+..
T Consensus 129 dqd~i~ym~~ea~~a~~el~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~~~~~ 208 (642)
T KOG2403|consen 129 DQDAIHYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLRHNTS 208 (642)
T ss_pred chhhhhHHHhhcchhHHHHHhccCccccccCCcHHHhhhhccccCcccccccccEEEeecccccHHHhhhHHHHhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred EEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccc
Q 046556 201 FFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFV 280 (633)
Q Consensus 201 i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 280 (633)
++......+|+. ..+.+.|++..+..++....++++.+|+||||+++.|...+++..+||||.+|+.++|+.+.+|||+
T Consensus 209 ~f~~yfa~dll~-~~g~~~~~va~~~~d~~i~~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d~efv 287 (642)
T KOG2403|consen 209 FFVEYFALDLLM-SQGECVGVIALNLEDGTIHRFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSDMEFV 287 (642)
T ss_pred hHHHHHHHHHHH-hccCceEEEEEEeecccceeeeeeeeEEEEeccceEEEEeccCeeEccCCCeEEeeccCCCccccee
Confidence 666666778877 4578889988888899999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCC
Q 046556 281 QFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLP 360 (633)
Q Consensus 281 ~~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~ 360 (633)
||||+++++.+.++ +++++++|++++|..|+|||++|.|...++++||++++.|..++++++|+.+.++++|+++.+++
T Consensus 288 qfhpt~i~g~Gcli-teg~rgeGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~grg~g~~kd~~~l~l~h~p 366 (642)
T KOG2403|consen 288 QFHPTGIYGAGCLI-TEGVRGEGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPNKDHVYLQLSHLP 366 (642)
T ss_pred eeeeecccccceee-eecccccccceeeccceeeccccccchhhcchhhhhhhhhhhhhHhhcccCCCCCccchhhccCC
Confidence 99999999999988 99999999999999999999999999889999999999999999999999999999999999999
Q ss_pred hhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCC
Q 046556 361 PDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANR 440 (633)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~r 440 (633)
++.+++++|.+......+.|+|..++|+||.|++||.||||.++.+++++..++.+..+.|||||||||++|.++||+||
T Consensus 367 ~e~~~~~~p~is~ta~i~agvdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~g~d~vvpGL~a~GEaac~svHGANR 446 (642)
T KOG2403|consen 367 PEPLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREVGQDQVVPGLYACGEAACASVHGANR 446 (642)
T ss_pred hhhhcccCCCcchhhhhHhhcCccccccccCCCcccccCccccCCccceeeeccccccccccceeehhHHHHHhhhhhhh
Confidence 99999999998887777899999999999999999999999999999999987777789999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHH
Q 046556 441 LGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQET 520 (633)
Q Consensus 441 lgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~ 520 (633)
||.|+|++.++||+..|..++..++.....++.+.++.++..+.+.+++..+++++-.+||..+|+.||++++|+|+...
T Consensus 447 LgaNSLLdlvvfgraca~~ia~~~~pg~~~~~~~~~~g~~sv~~ld~lr~~~gsi~TselRl~MQksMqnhaaVFR~g~~ 526 (642)
T KOG2403|consen 447 LGANSLLDLVVFGRACALSIAEELRPGDKVPPLASNAGEESVANLDKLRFADGSIRTSELRLEMQKTMQKHAAVFRVGSV 526 (642)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcccchHHHHHhhhcccCCccHHHHHHHHHHHHhhcceEEEechH
Confidence 99999999999999999999999888777777777777888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEE
Q 046556 521 LEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLG 600 (633)
Q Consensus 521 l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~ 600 (633)
|+++..+|.+|..+++++++.|..++||.+|.+.+|++||+++|..++.+|++||||||+|.|+|||.++|++|.||++.
T Consensus 527 LqEG~~kIskl~~~~k~lktfDrgmvWNsdLVETLELqNLl~cA~qTi~~AeaRkESRGAHAReDy~~R~DehWrKHTls 606 (642)
T KOG2403|consen 527 LQEGCRKISKLYGDFKDLKTFDRGMVWNSDLVETLELQNLLLCALQTIYSAEARKESRGAHAREDFPVRIDEHWRKHTLS 606 (642)
T ss_pred HHHHHHHHHHHHhHHhhhccccccceechhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhcccccchhhhhccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Eee--CCeeEEeeeeccccccCC-cccccCCCCCCC
Q 046556 601 YWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 633 (633)
Q Consensus 601 ~~~--~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 633 (633)
+++ .|+..++||||...+++. +.+++||+.|.|
T Consensus 607 y~~~~tg~Vtl~YRpVidkTLde~~~~tvPPaiRsY 642 (642)
T KOG2403|consen 607 YWDVGTGKVTLEYRPVIDKTLDEAECDTVPPAIRSY 642 (642)
T ss_pred eecCCCceEEEEEeecccccCchhhcCcCCCccCCC
Confidence 877 577999999999999985 899999999998
No 20
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=1.5e-94 Score=784.49 Aligned_cols=553 Identities=55% Similarity=0.864 Sum_probs=510.2
Q ss_pred cccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCC---cCCHHHHHHHHHhcCCCC
Q 046556 43 IVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMT---EDDWRWHMYDTVKGSDWL 119 (633)
Q Consensus 43 ~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~---~d~~~~~~~d~~~~~~~~ 119 (633)
++..++||||||||.|||+||+.|++.|++|+|+||..+.+|+|.+++||+++.+++.. .++++.|+.|+.+.++++
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l 81 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGL 81 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCc
Confidence 34578999999999999999999999999999999999999999999999999886543 368999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHh-CC
Q 046556 120 GDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMK-HN 198 (633)
Q Consensus 120 ~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~-~g 198 (633)
+|++++..+++.+++.+.+|+++|++|.+..+|.++++.+++++.. |.++.++.+|..++..|.+++.+ .+
T Consensus 82 ~dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~--------rt~~~~~~tG~~ll~~L~~~~~~~~~ 153 (562)
T COG1053 82 GDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKP--------RTCFAADKTGHELLHTLYEQLLKFSG 153 (562)
T ss_pred CCHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCC--------cceecCCCCcHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999998764 78888999999999999999988 67
Q ss_pred CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcc
Q 046556 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLE 278 (633)
Q Consensus 199 v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e 278 (633)
++++.+..+++|++++++.|.|++..+..+|+...++||+||+||||++..|..+++...+||||+.|++++|+.+.+||
T Consensus 154 ~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~~~t~~~~~tGdG~~ma~~aGa~l~dme 233 (562)
T COG1053 154 IEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYPYTTNAHIGTGDGVAMAYRAGAPLIDME 233 (562)
T ss_pred chhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEEeccCCccccCCcHHHHHHhcCCcccCCC
Confidence 89999999999998555669999999999999999999999999999998888899999999999999999999999999
Q ss_pred ccccccccccCCcceeeeccccCCCcEEECCCCCccccc--cCCccccccchhHHhHHHHHHHHhcCCC-CCCCCeEEEe
Q 046556 279 FVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMER--YAPTAKDLASRDVVSRSMTMEIREGRGV-GPLKDHIYLH 355 (633)
Q Consensus 279 ~~~~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~--~~~~~~~l~~r~~~~~~i~~e~~~g~g~-~~~~~~v~~d 355 (633)
|+||||+++.+.++++ +|++|++|++++|++|+||+++ |.|...++.||+++++++..++++|+|+ .+....+|+|
T Consensus 234 ~~Q~hpt~~~~~g~l~-~e~~RgeGG~l~N~~Gerf~e~~~~~~~~~~l~~rd~~~r~~~~ei~~G~g~~~~~~~~v~ld 312 (562)
T COG1053 234 FVQFHPTGLVGSGILI-TEAVRGEGGILLNKDGERFMERYGYAPKYKELAPRDVVSRAILMEIREGRGVDGPGGDYVYLD 312 (562)
T ss_pred ccccccceecCCceEE-eeecccCCCeEecCCcceeeccccccccccccCCcchHHHHHHHHHhcCCCcccCCCceEEEE
Confidence 9999999999988888 9999999999999999999999 6788889999999999999999999987 3445679999
Q ss_pred cCCCChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccc
Q 046556 356 LNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASV 435 (633)
Q Consensus 356 ~~~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~ 435 (633)
+.+++++.+.++++.+......+.|+||.++|+||.|+.||+||||.+|. ++ ..|.||||||||||+|...
T Consensus 313 l~hlg~~~~~~~l~~~~~~~~~~~g~D~~~~p~~v~p~~Hy~mGGi~~~~-~~--------~~t~i~GLfAaGe~~~~~~ 383 (562)
T COG1053 313 LRHLGKEELEERLPGIRELAKKFAGIDPVKEPIPVRPTVHYTMGGIPTNT-GR--------VETKIPGLFAAGEAAGVSH 383 (562)
T ss_pred hhhcChHHHHhcCchHHHHHHhhcCCCcccceeEecccceeccCCEeecc-cc--------cccCCCCeEECceeccccc
Confidence 99999988999999999888888999999999999999999999999996 44 2378999999999998788
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEe
Q 046556 436 HGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVF 515 (633)
Q Consensus 436 ~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~ 515 (633)
||+||||+|+|+++++||++||..++++++...... +.+..+...+++..++...++.++.+++++||++|+++++++
T Consensus 384 hGanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~m~~~~~i~ 461 (562)
T COG1053 384 HGANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGSP--PASAVEAERERFDALLRRGGDENPAQIREELQEVMGDNVGIF 461 (562)
T ss_pred CCcccCCccccHHHHHHHHHHHHHHHHHHHhccCCC--chhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhCCceec
Confidence 899999999999999999999999999987643222 344455677788888888888899999999999999999999
Q ss_pred eCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCccccc
Q 046556 516 RTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWM 595 (633)
Q Consensus 516 r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~ 595 (633)
|+++.|++++++|++|++++.++.+.|.+..+|.+|..++|+.+||.+|++++.+||.|+||||+|+|+|||++||+||+
T Consensus 462 R~~~~l~~~~~~i~~l~~~~~~~~~~d~~~~~n~~l~~~~el~~~l~~A~~~~~~al~R~EsRgah~r~d~p~rdD~~w~ 541 (562)
T COG1053 462 RNEEGLEKALEKLKELRERLKDIRVTDKSELFNTDLRDALELGNMLDVAEAVAASALARTESRGAHYREDYPERDDENWL 541 (562)
T ss_pred cCHHHHHHHHHHHHHHHHHhhcceecchhHhhhhhhHHHHhHHHHHHHHHHHHHHHhcCcccccccCCccCCccchHHHH
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeCCeeEEeeeeccc
Q 046556 596 KHTLGYWENEKVRLDYRPVHM 616 (633)
Q Consensus 596 ~~~~~~~~~g~~~~~~~~~~~ 616 (633)
||++..++. +++++++||.+
T Consensus 542 kht~~~~~~-~~~~~~~~v~~ 561 (562)
T COG1053 542 KHTLASYDK-KPRLEYEPVKI 561 (562)
T ss_pred HHHHHhcCC-ccceeeeeccc
Confidence 999998887 89999999864
No 21
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=100.00 E-value=2.1e-92 Score=788.01 Aligned_cols=562 Identities=56% Similarity=0.929 Sum_probs=484.8
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCC-CcCCHHHHHHHHHhcCCCCCCHHHHHH
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM-TEDDWRWHMYDTVKGSDWLGDQDAIQY 127 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~-~~d~~~~~~~d~~~~~~~~~~~~~v~~ 127 (633)
||||||+|+|||+||+.|+++|++|+||||....+|++..++||+++..+.. ..|+++.++.|++..+.+++++++++.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~~ 80 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVEY 80 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHHH
Confidence 8999999999999999999999999999999888888888889988776532 357889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEEEE
Q 046556 128 MCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFA 207 (633)
Q Consensus 128 ~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v 207 (633)
+++++++.++||+++|++|...+++.+....+++++. +|..+..+.+|..+...|.+.+++.|+++++++.+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v 152 (566)
T TIGR01812 81 MCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSK--------DRTCYAADKTGHALLHTLYEQCLKLGVSFFNEYFA 152 (566)
T ss_pred HHHHHHHHHHHHHHcCCcceecCCCcEeecccccccc--------CeeEECCCCCHHHHHHHHHHHHHHcCCEEEeccEE
Confidence 9999999999999999999988777655545555543 36677777889999999999998899999999999
Q ss_pred EEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccccccccc
Q 046556 208 LDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGI 287 (633)
Q Consensus 208 ~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~ 287 (633)
++|+. ++++|+||.+.+..+|+...+.|+.||+||||++.+|..+++++.++|||+.||+++||.+.+|||+||||+.+
T Consensus 153 ~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~~~~~~~~~tGdGi~ma~~aGa~l~~~e~~q~~p~~~ 231 (566)
T TIGR01812 153 LDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGL 231 (566)
T ss_pred EEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCCCCCCCCCcccHHHHHHHHcCCCccCCcceEEeeeee
Confidence 99998 57999999988766787778999999999999999998888889999999999999999999999999999987
Q ss_pred cCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCC-CCCeEEEecCCCChhHHHH
Q 046556 288 YGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGP-LKDHIYLHLNHLPPDVLKE 366 (633)
Q Consensus 288 ~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~-~~~~v~~d~~~~~~~~l~~ 366 (633)
.+.+.++ ++.+++.++++||.+|+||+++|+|...++.+|+++++++..++.+++++.. ....+|+|+++++++.+++
T Consensus 232 ~~~~~~~-~e~~~~~g~~lvn~~G~RF~~~~~~~~~e~~~r~~~~~ai~~~~~~~~g~~~~~~~~v~~d~~~~~~~~~~~ 310 (566)
T TIGR01812 232 YPSGILI-TEGCRGEGGYLVNKNGERFMERYAPEKMELAPRDVVSRAMWTEIREGRGVGSPPGDYVYLDLRHLGEEKIEE 310 (566)
T ss_pred CCCCcEE-eccccCCceEEECCCCCCCCcccCccccccCchhHHHHHHHHHHHhcCCCCCCCCCEEEEECCCCCHHHHHH
Confidence 7666666 8888999999999999999999998777899999999999999988776522 2235999999999888888
Q ss_pred HhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhH
Q 046556 367 RLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSL 446 (633)
Q Consensus 367 ~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l 446 (633)
+++.+.+.+....|+|+.++++||.|..||++|||.||.+++|++. |+||||||||||+|+++||+|||+||+|
T Consensus 311 ~~~~~~~~~~~~~g~d~~~~~i~v~p~~h~t~GGi~id~~~~v~~~------t~I~GLyAaGe~a~~g~hGa~rl~g~sl 384 (566)
T TIGR01812 311 RLPQIRELAKYFAGVDPVKEPIPVRPTAHYSMGGIPTDYTGRVICE------TIVKGLFAAGECACVSVHGANRLGGNSL 384 (566)
T ss_pred HchHHHHHHHHHcCCCCCCCceeeehhhcccCCCeEECcCcccccC------cccCCeeecccccccCcCcccccchhhH
Confidence 8988888777557999999999999999999999999999999863 9999999999998778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-CCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHHHHHH
Q 046556 447 LDIVVFGRACANRVAEIQRPG-EKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGC 525 (633)
Q Consensus 447 ~~a~~~G~~Ag~~aa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l~~~l 525 (633)
++|++||++||++|+++++.. ......+........+.+..+...+++.++.+++++||++||+|+|++|++++|++++
T Consensus 385 ~~a~v~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lq~~m~~~~gi~R~~~~L~~al 464 (566)
T TIGR01812 385 LELVVFGRIAGEAAAEYAAKTGNPAADIEEEAVKAEEALIDLLVESNGGERVAKIREELGDTMDDNVGIFRTEELLKKAV 464 (566)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHhccceecHHHHHHHH
Confidence 999999999999999887532 1111111111122222334333333446788899999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEEEee-C
Q 046556 526 QLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWE-N 604 (633)
Q Consensus 526 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~~-~ 604 (633)
.+|++|++++..+.+.+....++++|++++|++||+++|+++++|||+|+||||+|||+|||++||++|.+++++++. +
T Consensus 465 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~~~~~~~~~~~~~~~ 544 (566)
T TIGR01812 465 DEIEELRERYKNVRINDKSKVFNTDLLEALELGNMLDLAEVVAAGALNRKESRGAHAREDYPERDDENWLKHTLAYYDNP 544 (566)
T ss_pred HHHHHHHHHHHhhcccCcccccCHhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCCCCCCcCcccccceEEEEecCC
Confidence 999999988887777776667889999999999999999999999999999999999999999999999999987764 5
Q ss_pred CeeEEeeeeccccccCCcccccCCCCCCC
Q 046556 605 EKVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 605 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
+++++.+++++++ .++|..|.|
T Consensus 545 ~~~~~~~~~~~~~-------~~~~~~~~~ 566 (566)
T TIGR01812 545 GTPRLEYKPVTIT-------KYEPAERKY 566 (566)
T ss_pred Ccceeeeccceec-------ccCCCCCCC
Confidence 6788988888643 366777776
No 22
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=5.7e-92 Score=785.96 Aligned_cols=549 Identities=36% Similarity=0.611 Sum_probs=468.5
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCC-CcCCHHHHHHHHHhcCCCCCCHH
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM-TEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~-~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
..++||||||+|+|||+||+.|++.|++|+||||....+|+|..++||+++..+.. ..|+++.|+.|+++.+.++++++
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~ 85 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR 85 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence 35799999999999999999999999999999999888888999999998876643 45889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC------
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH------ 197 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~------ 197 (633)
+++.+++++++.++||+++|++|.+..+|.+....+++++. +|.++..+.+|..++..|.+.+++.
T Consensus 86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~ 157 (626)
T PRK07803 86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTY--------PRLAHVGDRTGLELIRTLQQKIVSLQQEDHA 157 (626)
T ss_pred HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCccc--------CeEEecCCCcHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999988888776666676654 4777777889999999999988776
Q ss_pred --C-----CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHc
Q 046556 198 --N-----TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRA 270 (633)
Q Consensus 198 --g-----v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~a 270 (633)
| |++++++.|++|+. ++++|+||.+.+..+|+...|.|+.|||||||++.+|..++++..+||||+.||+++
T Consensus 158 ~~G~~~~~v~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~a 236 (626)
T PRK07803 158 ELGDYEARIKVFAECTITELLK-DGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIGKSFKVTSNSWEYTGDGHALALRA 236 (626)
T ss_pred cccCCcCceEEEeCCEEEEEEE-ECCEEEEEEEEECCCCeEEEEEcCeEEECCCcccCCCCCcCCCCCcCcHHHHHHHHc
Confidence 6 99999999999998 578999999887678888889999999999999999998888889999999999999
Q ss_pred CCCccCccccccccccccC----CcceeeeccccCCCcEEECCCCCccccccCCc-------------------------
Q 046556 271 GLPLEDLEFVQFHPTGIYG----AGCLLLKVGSRGEGGILRNSEGERFMERYAPT------------------------- 321 (633)
Q Consensus 271 Ga~l~~~e~~~~~p~~~~~----~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~------------------------- 321 (633)
||.+.+|||+||||+++.. .++++ ++++++.|+++||.+|+||+++|.|.
T Consensus 237 Ga~l~~me~~q~~Pt~~~~~~~~~~~li-~e~~rg~g~ilvN~~G~RF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (626)
T PRK07803 237 GATLINMEFVQFHPTGMVWPPSVKGILV-TEGVRGDGGVLKNSEGKRFMFDYIPDVFKGQYAETEEEADRWYKDNDNNRR 315 (626)
T ss_pred CCcEeCCcceeecccccccCCCcCceEE-eeeccCCceEEECCCCCCccccccchhhhhhccccccchhhhhhccccccc
Confidence 9999999999999987632 23556 88999999999999999999998764
Q ss_pred cccccchhHHhHHHHHHHHhcCCCCCCCCeEEEec-CCCChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccC
Q 046556 322 AKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHL-NHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGG 400 (633)
Q Consensus 322 ~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~-~~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GG 400 (633)
..++.||+++++++..++.+|+|+. .+.+|+|+ ++++++.|+++++.+...+..+.|+|+.++||||.|.+||++||
T Consensus 316 ~~~l~prd~v~~ai~~e~~~g~g~~--~~~v~ldla~~~~~~~l~~~~~~~~~~~~~~~g~d~~~~~i~v~P~~h~~~GG 393 (626)
T PRK07803 316 PPELLPRDEVARAINSEVKAGRGSP--HGGVYLDIASRLPAEEIKRRLPSMYHQFKELADVDITKEPMEVGPTCHYVMGG 393 (626)
T ss_pred ccccccHHHHHHHHHHHHHhcCCCC--CCcEEEEccccCCHHHHHHHhHHHHHHHHHHcCCCCCCCceeeeeecceecCC
Confidence 2478899999999999999988762 24599999 79999999999998655555457999999999999999999999
Q ss_pred cccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhh
Q 046556 401 IPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGER 480 (633)
Q Consensus 401 i~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~ 480 (633)
|.||.+++ .|+||||||||||+ +|+||+|||+||+|++|+|||++||++|+++++...............
T Consensus 394 i~vd~~~~---------~t~IpGLYAaGE~a-gg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~~~~~~~~~~~~~~~ 463 (626)
T PRK07803 394 VEVDPDTG---------AATVPGLFAAGECA-GGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRGLGSRPAVSEEAVDA 463 (626)
T ss_pred EEEcCCCC---------eeecCCeeEccccc-cccCcCccccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCChHHHHH
Confidence 99998764 28999999999997 699999999999999999999999999999875421111111111111
Q ss_pred HHHHH-HHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHH
Q 046556 481 TVAWL-DKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELEN 559 (633)
Q Consensus 481 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~ 559 (633)
..+.. ..+....++.++.+++++||++||+++|++|++++|+++|.+|++|++++.++.+.+. ..+|.+|.+++|++|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~e~~~ 542 (626)
T PRK07803 464 AAREALAPFERPAGAENPYTLHAELQQTMNDLVGIIRKEDEIEQALEKLAELKERAANVSVEGH-RQYNPGWHLALDLRN 542 (626)
T ss_pred HHHHHHhhhhcccCCCCHHHHHHHHHHHHHhhceEEecHHHHHHHHHHHHHHHHHHHHhccCcc-cccchHHHHHHHHHh
Confidence 22122 2221222235788899999999999999999999999999999999998887766553 456778899999999
Q ss_pred HHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEEEee---CCeeEEeeeecccc
Q 046556 560 LLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWE---NEKVRLDYRPVHMN 617 (633)
Q Consensus 560 ~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~~~~---~g~~~~~~~~~~~~ 617 (633)
||++|+++++|||+|+||||+|||+|||++|+ +|.+++++.+. +|+++++++++...
T Consensus 543 ~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 602 (626)
T PRK07803 543 MLLVSECVARAALERTESRGGHTRDDHPGMDP-EWRRINLVCRADPVGGHVTVTRQPQPPM 602 (626)
T ss_pred HHHHHHHHHHHHHhCCCCcccEeCCCCCccCh-hhhceEEEEecCCCCCceEEEEccCCCc
Confidence 99999999999999999999999999999885 89999886544 57999999966533
No 23
>PLN02815 L-aspartate oxidase
Probab=100.00 E-value=1.7e-91 Score=772.47 Aligned_cols=528 Identities=35% Similarity=0.532 Sum_probs=444.3
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHH
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 124 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~ 124 (633)
+.++||||||+|+|||+||+.|++.| +|+||||....+|++.+++||+++..+ ..|+++.|+.|+++.+.+++|+++
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~--~~Ds~e~~~~d~~~~g~~~~d~~l 103 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLD--PSDSVESHMRDTIVAGAFLCDEET 103 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCC--CCCCHHHHHHHHHHhccCCCcHHH
Confidence 45799999999999999999999999 999999998888889999999887654 468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC-CCEEEE
Q 046556 125 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH-NTQFFV 203 (633)
Q Consensus 125 v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~-gv~i~~ 203 (633)
++.+++++++.++||+++|++|.+..+|.+....+++++. .|.++..+.+|..++..|.+.+++. |+++++
T Consensus 104 v~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~--------~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~ 175 (594)
T PLN02815 104 VRVVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSH--------HRIVHAADMTGREIERALLEAVKNDPNITFFE 175 (594)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCcc--------CceeecCCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999999999988777766555666654 3777777888999999999988765 899999
Q ss_pred EEEEEEEEEccCC---cEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccc
Q 046556 204 EYFALDLIMNSDG---TCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFV 280 (633)
Q Consensus 204 ~~~v~~L~~d~~g---~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 280 (633)
++.+++|++|+++ +|+||++.+..+|+...|.||+|||||||+++.|..+++++.+||||+.||+++||.+.||||+
T Consensus 176 ~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~~ttn~~~~tGDGi~mA~~aGA~l~~mefv 255 (594)
T PLN02815 176 HHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGIAMAHRAQAVVSNMEFV 255 (594)
T ss_pred ceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceeeCCCCCCCCCcccHHHHHHHHcCCcEecCcee
Confidence 9999999985444 3999999876788888899999999999999999888999999999999999999999999999
Q ss_pred ccccccccCCc------------ceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCC
Q 046556 281 QFHPTGIYGAG------------CLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPL 348 (633)
Q Consensus 281 ~~~p~~~~~~~------------~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~ 348 (633)
||||+.+.+.+ +++ ++.++++|++++|.+|+|||++|++. .++.+|++++++|..++.++++
T Consensus 256 QfhPt~~~~~~~~~~~~~~~~~~~l~-~ea~rg~G~ilvN~~GeRF~~~y~~~-~ela~rd~va~ai~~e~~~~~~---- 329 (594)
T PLN02815 256 QFHPTALADEGLPIKPAKARENAFLI-TEAVRGDGGILYNLAGERFMPLYDER-AELAPRDVVARSIDDQLKKRNE---- 329 (594)
T ss_pred EEeeeeecCCCcccccccccccccee-ehhhccCCcEEECCCCCCCccccCcc-cccCChHHHHHHHHHHHHhcCC----
Confidence 99998775432 455 88999999999999999999999874 5899999999999999876543
Q ss_pred CCeEEEecCCCChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeec
Q 046556 349 KDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAG 428 (633)
Q Consensus 349 ~~~v~~d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaG 428 (633)
..+|+|+++++.+.+.+++|.+.+.+.. .|+|+.++|+||.|.+||+||||.||.+++ |+||||||||
T Consensus 330 -~~v~lD~~~~~~~~~~~~~p~i~~~~~~-~GiD~~k~pi~v~P~~hyt~GGi~vD~~~~----------t~IpGLyAaG 397 (594)
T PLN02815 330 -KYVLLDISHKPREEILSHFPNIAAECLK-RGLDITKQPIPVVPAAHYMCGGVRTGLQGE----------TNVQGLYAAG 397 (594)
T ss_pred -CEEEEeCCCCCHHHHHHHCHHHHHHHHH-hCcCCCCCceeeechhcEeCCCeeECCCCc----------eecCCEEecc
Confidence 2599999999988888899998887765 799999999999999999999999999987 9999999999
Q ss_pred ccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhH-HHHHHHhhhcCCCCChHHHHHHHHHH
Q 046556 429 EAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERT-VAWLDKIRNSNGSIPTSKIRLNMQRV 507 (633)
Q Consensus 429 e~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 507 (633)
||+|+|+||+|||+||+|++|+|||++||+++++++................. ...............+.+++.+||++
T Consensus 398 E~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 477 (594)
T PLN02815 398 EVACTGLHGANRLASNSLLEALVFARRAVQPSIDHMARALRDVSAAAAWARPVAPTALADSVMDEILEWTAVVRKELQRI 477 (594)
T ss_pred cccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhccchHHHHHHHHHH
Confidence 99877999999999999999999999999999877532110000000000000 00000000001112367888999999
Q ss_pred hhccceEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCC
Q 046556 508 MQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFT 587 (633)
Q Consensus 508 m~~~~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P 587 (633)
||+|+||+|++++|+++|++|++|++++.++.. .....+|.++++++|++||+++|++|++|||+|+||||+|||+|||
T Consensus 478 m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~el~~~l~~a~~i~~aal~R~ESRG~H~R~D~P 556 (594)
T PLN02815 478 MWNYVGIVRSTERLETAERKLEELEAEWEAILF-RHGWKPTMVGLEACEMRNLFCVAKLVVSSALARKESRGLHYTTDYP 556 (594)
T ss_pred HHhcCCEEEcHHHHHHHHHHHHHHHHHHHHhhc-ccccccchhHHHHHHHHhHHHHHHHHHHHHHhCCCCcceeecCCCC
Confidence 999999999999999999999999988754221 1111235689999999999999999999999999999999999999
Q ss_pred CCCcccccceEEEEee
Q 046556 588 KRDDENWMKHTLGYWE 603 (633)
Q Consensus 588 ~~d~~~~~~~~~~~~~ 603 (633)
++||+ |+++++++..
T Consensus 557 ~~~~~-~~~~~~~~~~ 571 (594)
T PLN02815 557 ELVES-ERKPTVIFPS 571 (594)
T ss_pred ccChh-HhcCEEEeec
Confidence 99985 9988877554
No 24
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=100.00 E-value=1.8e-89 Score=758.60 Aligned_cols=525 Identities=40% Similarity=0.644 Sum_probs=450.0
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC-CCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHH
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP-TRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~-~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
..++||||||+|.|||+||+.| +.|++|+||||... .+|++..+.|++++..+ ..|+++.++.|+++.+.+++|++
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~--~~d~~~~~~~d~~~~~~~~~d~~ 81 (543)
T PRK06263 5 IMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLN--PEDSFEKHFEDTMKGGAYLNDPK 81 (543)
T ss_pred eeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCC--CCCCHHHHHHHHHHHhcCCCCHH
Confidence 4578999999999999999999 99999999999865 45667778888877654 46789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEE
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFV 203 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~ 203 (633)
+++.+++++++.++||+++|++|.+.++|.+....+++++. +|.++..+.+|..+...|.+.+++.||++++
T Consensus 82 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~--------~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~ 153 (543)
T PRK06263 82 LVEILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSF--------NRTCYAGDRTGHEMMMGLMEYLIKERIKILE 153 (543)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEc--------CeEEECCCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 99999999999999999999999988777665555565543 3777777778899999999999889999999
Q ss_pred EEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccccc
Q 046556 204 EYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFH 283 (633)
Q Consensus 204 ~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~ 283 (633)
++.+++|+.|++++|+||++.+..+|+...|+|+.||+||||+++.|..+++++.+||||+.||+++||.+.+|||+|||
T Consensus 154 ~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~~~~~~~~~~~tGdG~~ma~~aGa~l~~me~~q~~ 233 (543)
T PRK06263 154 EVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQLYPITSNPIQKTGDGFAIAYRAGAELIDMEMVQFH 233 (543)
T ss_pred CeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCcCccceeEe
Confidence 99999999854446999998875678877899999999999999988888888899999999999999999999999999
Q ss_pred ccccc----CCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCC
Q 046556 284 PTGIY----GAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHL 359 (633)
Q Consensus 284 p~~~~----~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~ 359 (633)
|+++. ..+.++ ++.+++.++++||.+|+||+++|+|...++.+|++++++++.++.+++|+. .+.+|+|.+++
T Consensus 234 p~~~~~~~~~~~~~~-~~~~~~~g~~lvn~~G~RF~~~y~~~~~e~~~~~~~~~ai~~~~~~g~g~~--~~~~~ld~~~~ 310 (543)
T PRK06263 234 PTGMVYPYSGRGILV-TEAVRGEGGILYNKNGERFMKRYDPERMELSTRDVVARAIYTEIQEGRGTN--HGGVYLDVTHL 310 (543)
T ss_pred cceeccCCCCCceEE-eeeecCCccEEECCCCCCcccccCcccccccchhHHHHHHHHHHHhcCCCC--CceEEEECCCC
Confidence 98664 233455 777888999999999999999999977789999999999999998887752 24599999999
Q ss_pred ChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCC
Q 046556 360 PPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGAN 439 (633)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~ 439 (633)
+++.++++++.+...+. ..|+|+.++|+++.|..|+++||+.||.+++ |+|||||||||++ +|+||+|
T Consensus 311 ~~~~l~~~~~~~~~~~~-~~G~D~~~~pi~v~p~~~~t~GGi~vd~~~~----------t~IpGLyAaGE~~-gg~hG~~ 378 (543)
T PRK06263 311 PDEVIEEKLETMLEQFL-DVGVDIRKEPMEVAPTAHHFMGGIRINEDCE----------TNIPGLFACGEVA-GGVHGAN 378 (543)
T ss_pred CHHHHHHHHHHHHHHHH-HhCCCCCCCCEEEeccccEecCCEEECCCCc----------ccCCCeEeccccc-cCCCCCC
Confidence 99999999988543332 2699999999999999999999999999987 9999999999997 6999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHh-hhcCCCCChHHHHHHHHHHhhccceEeeCH
Q 046556 440 RLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKI-RNSNGSIPTSKIRLNMQRVMQNNAAVFRTQ 518 (633)
Q Consensus 440 rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~ 518 (633)
|++||+|++|++||++||++|+++++.... ..... ......+.+..+ ...++..+|.+++++||++||+++|++|++
T Consensus 379 rlgG~sl~~a~v~Gr~Ag~~aa~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~R~~ 456 (543)
T PRK06263 379 RLGGNALADTQVFGAIAGKSAAKNAENNEF-KKVNR-SVEEDIARIKSEIKFLNGSINPYDLIDELKKTMWDYVSIVRNE 456 (543)
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHhhhcCC-Ccchh-hhhhhHHHHHHHhhhcccCCCHHHHHHHHHHHHHhhCcEEEcH
Confidence 999999999999999999999998753221 11111 111122223322 223345778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceE
Q 046556 519 ETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHT 598 (633)
Q Consensus 519 ~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~ 598 (633)
++|+++|.+|++|+++++++.+.+ .|+|++++|+++||++|+++++|||+|+||||+|||+|||++|| +|++|+
T Consensus 457 ~~L~~al~~l~~l~~~~~~~~~~~-----~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~h~R~D~P~~~~-~~~~~~ 530 (543)
T PRK06263 457 KGLKKALEEINELKEKLKDLKVNG-----IVDFNKALELENMILVAELVIKSALLRKESRGAHYREDYPETND-EWFGNI 530 (543)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-----chhhHHHHHHHHHHHHHHHHHHHHHhCCCCcceeccCCCCccCh-hhcCeE
Confidence 999999999999999998887776 38999999999999999999999999999999999999999998 899999
Q ss_pred EEEee
Q 046556 599 LGYWE 603 (633)
Q Consensus 599 ~~~~~ 603 (633)
++.+.
T Consensus 531 ~~~~~ 535 (543)
T PRK06263 531 ILNKN 535 (543)
T ss_pred EecCC
Confidence 77644
No 25
>PRK07395 L-aspartate oxidase; Provisional
Probab=100.00 E-value=2.3e-89 Score=753.59 Aligned_cols=522 Identities=35% Similarity=0.535 Sum_probs=439.1
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHH
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
++.++||||||+|.|||+||+.|++ |++|+||||....+|++.+++||+++..+ ..|+++.|+.|+++.+.+++|++
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~--~~ds~e~~~~d~~~~g~~~~d~~ 82 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTLKTSASDWAQGGIAAAIA--PDDSPKLHYEDTLKAGAGLCDPE 82 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCCCCCchhhhcccceeccc--CCCCHHHHHHHHHHhcCCCCCHH
Confidence 4568999999999999999999974 99999999998888888889999887665 46889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC-CCEEE
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH-NTQFF 202 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~-gv~i~ 202 (633)
+++.+++++++.++||+++|++|.+. ++.+....+++++ .+|.++..+.+|..++..|.+.+++. |++++
T Consensus 83 lv~~~~~~s~~~i~wL~~~Gv~f~~~-~~~~~~~~~~g~s--------~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~ 153 (553)
T PRK07395 83 AVRFLVEQAPEAIASLVEMGVAFDRH-GQHLALTLEAAHS--------RPRVLHAADTTGRAIVTTLTEQVLQRPNIEII 153 (553)
T ss_pred HHHHHHHHHHHHHHHHHhcCCeeecC-CCceeeecccccc--------cCeEEEeCCCChHHHHHHHHHHHhhcCCcEEE
Confidence 99999999999999999999999865 3333333344443 34777777888999999999988764 99999
Q ss_pred EEEEEEEEEEcc-CCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccc
Q 046556 203 VEYFALDLIMNS-DGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQ 281 (633)
Q Consensus 203 ~~~~v~~L~~d~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~ 281 (633)
+++.+++|+.++ +++|+||++.+ +|+...+.|+.|||||||++.+|..+++++.+||||+.||+++||.+.+|||+|
T Consensus 154 ~~~~v~~Li~~~~~g~v~Gv~~~~--~g~~~~i~AkaVILATGG~~~~~~~~tn~~~~tGdGi~mA~~aGA~l~~me~~q 231 (553)
T PRK07395 154 SQALALSLWLEPETGRCQGISLLY--QGQITWLRAGAVILATGGGGQVFAQTTNPAVSTGDGVALAWRAGAQLRDLEFFQ 231 (553)
T ss_pred ECcChhhheecCCCCEEEEEEEEE--CCeEEEEEcCEEEEcCCCCccccCCccCccchhhHHHHHHHHcCCCccCCccee
Confidence 999999999853 38999998864 677777999999999999999998888899999999999999999999999999
Q ss_pred cccccccCC---cceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCC
Q 046556 282 FHPTGIYGA---GCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNH 358 (633)
Q Consensus 282 ~~p~~~~~~---~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~ 358 (633)
|||+.+... .+++ ++.+++.|+++||.+|+||+++|+|. .++.+|+++++++++++.++.+ ....+.||+|+++
T Consensus 232 ~hpt~~~~~~~~~~l~-~e~~rg~g~ilvn~~G~RF~~~y~~~-~El~~rd~v~~ai~~e~~~~~~-~~~~~~v~ld~~~ 308 (553)
T PRK07395 232 FHPTALTKPGAPRFLI-SEAVRGEGAHLVDAQGRRFAFDYHPA-GELAPRDVVSRAIFSHLQKTAT-DPATAHVWLDLRP 308 (553)
T ss_pred EEeeeecCCCCCceee-ehhccCCcEEEECCCCCCCccccCcc-cccccHHHHHHHHHHHHHhcCC-CCCCceEEEeccc
Confidence 999877532 2455 88899999999999999999999986 5899999999999999877532 2233469999999
Q ss_pred CChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCC
Q 046556 359 LPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGA 438 (633)
Q Consensus 359 ~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga 438 (633)
++++.+++++|.+.+.+.. .|+|+.++|+||.|++||+||||.||.+++ |+||||||||||+|+|+||+
T Consensus 309 ~~~~~~~~~~p~i~~~~~~-~giD~~~~~i~v~P~~h~~~GGi~vd~~~~----------t~I~GLyAaGE~a~~G~hGa 377 (553)
T PRK07395 309 IPAERIRRRFPNIIRVCQK-WGIDVFQEPIPVAPAAHYWMGGVVTDLNNQ----------TSIPGLYAVGETASTGVHGA 377 (553)
T ss_pred cchHHHHHhhHHHHHHHHH-cCCCcCCCEeEEecceeecCCCeeECCCCc----------ccCCCEEECccccccCCCcc
Confidence 9999999999999888875 799999999999999999999999999987 99999999999987899999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCH
Q 046556 439 NRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQ 518 (633)
Q Consensus 439 ~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~ 518 (633)
||||||||++|+|||++||+.+++..... ...... .........+. .+..++.+++++||++||+++||+|++
T Consensus 378 nRL~gnsl~e~lvfG~~a~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~l~~~m~~~~gi~R~~ 450 (553)
T PRK07395 378 NRLASNSLLECLVFAAQLAQLELPIEPPA--SPDLPP---ISFIIDASQWK--NEQEQIQRIRQELPELVWQSAGICREA 450 (553)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcccC--CCcccc---hhhHHHHhhhh--ccCCCHHHHHHHHHHHHHhcccEEEcH
Confidence 99999999999999999999987542111 100100 00000111111 122457889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccc--------cc-----cchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCC
Q 046556 519 ETLEEGCQLIDKAWESFHDVKLTDRS--------LI-----WNTDLIETIELENLLINACITMHSAEARKESRGAHARED 585 (633)
Q Consensus 519 ~~l~~~l~~l~~l~~~~~~~~~~~~~--------~~-----~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D 585 (633)
++|++++.+|++|+++++++.+.+.. .. +|.+|..++|++||+++|++|++|||+||||||+|||+|
T Consensus 451 ~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~~~al~R~ESRG~H~R~D 530 (553)
T PRK07395 451 DTLERAIAQVEQWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWAETRNLLDIAYLILKSALFRTESRGGHYRLD 530 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccccccchhhHHHHHHHHhHHHHHHHHHHHHHhCCCCccceecCC
Confidence 99999999999999888766555411 11 124588889999999999999999999999999999999
Q ss_pred CCCCCcccccceEEEE
Q 046556 586 FTKRDDENWMKHTLGY 601 (633)
Q Consensus 586 ~P~~d~~~~~~~~~~~ 601 (633)
||++|+ +|+++++++
T Consensus 531 ~p~~~~-~~~~~~~~~ 545 (553)
T PRK07395 531 YPQTDP-AWQVHTLVQ 545 (553)
T ss_pred CCccCh-hhhceEEEE
Confidence 999876 799999775
No 26
>PRK07804 L-aspartate oxidase; Provisional
Probab=100.00 E-value=4.2e-86 Score=729.25 Aligned_cols=511 Identities=34% Similarity=0.492 Sum_probs=436.6
Q ss_pred cccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCH
Q 046556 43 IVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQ 122 (633)
Q Consensus 43 ~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~ 122 (633)
+++.++||||||+|+|||+||+.|++.|++|+||||....+|++..++||+++..+ ..|+++.|+.|+++.+.+++++
T Consensus 12 ~~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~--~~ds~e~~~~d~~~~g~g~~d~ 89 (541)
T PRK07804 12 GWRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLD--PGDSPEAHVADTLVAGAGLCDP 89 (541)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccC--CCCCHHHHHHHHHHhcCCCCCH
Confidence 56788999999999999999999999999999999998888888888999987664 4688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEc-cCCchHHHHHHHHHHHHhCCCEE
Q 046556 123 DAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACA-ADRTGHALLHTLYGQAMKHNTQF 201 (633)
Q Consensus 123 ~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~-~~~~g~~l~~~l~~~a~~~gv~i 201 (633)
++++.+++++++.++||+++|++|....+|.+....+++++. .|.++. .+.+|..+...|.+++++.||++
T Consensus 90 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~--------~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i 161 (541)
T PRK07804 90 DAVRSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSR--------RRIVHAGGDATGAEVQRALDAAVRADPLDI 161 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeec--------CeeEecCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999999999988888776655666543 355555 36789999999999999999999
Q ss_pred EEEEEEEEEEEccCCcEEEEEEEEc---CCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcc
Q 046556 202 FVEYFALDLIMNSDGTCQGVIALNM---EDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLE 278 (633)
Q Consensus 202 ~~~~~v~~L~~d~~g~v~Gv~~~~~---~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e 278 (633)
+.++.|++|+.+++++|+|+.+.+. .++....+.|+.||+||||++.+|..+++++.+||||+.||+++|+.+.+||
T Consensus 162 ~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me 241 (541)
T PRK07804 162 REHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYAATTNPAGSTGDGVALALRAGAAVSDLE 241 (541)
T ss_pred EECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCCCccCCCCcchHHHHHHHHcCCCCcCCc
Confidence 9999999999854579999988642 1233457899999999999999999999999999999999999999999999
Q ss_pred ccccccccccCC------cceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeE
Q 046556 279 FVQFHPTGIYGA------GCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHI 352 (633)
Q Consensus 279 ~~~~~p~~~~~~------~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v 352 (633)
|+||||+.+... .+++ ++.+++.|++++|.+|+||+++|+|. .++.+|+++++++..++.++ +. ..+
T Consensus 242 ~~q~~pt~~~~~~~~~~~~~l~-~~~~r~~g~~lvn~~G~RF~~~~~~~-~E~a~rd~v~~ai~~~~~~~-g~----~~v 314 (541)
T PRK07804 242 FVQFHPTVLFLGPAAGGQRPLI-SEAVRGEGAILVDAQGNRFMAGVHPL-ADLAPRDVVAKAIDRRMKAT-GD----DHV 314 (541)
T ss_pred ceeEecceecCCccccccccee-chhhcCCceEEECCCCCCCccccCcc-cccCcHHHHHHHHHHHHHhc-CC----CEE
Confidence 999999876521 2345 78889999999999999999999986 58999999999999988652 22 359
Q ss_pred EEecCCCChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeeccccc
Q 046556 353 YLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAAC 432 (633)
Q Consensus 353 ~~d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~ 432 (633)
|+|.+. .+.+.+++|.+.+.+.. .|+||.++++||.|..||++|||.||.+++ |+||||||||||+|
T Consensus 315 ~lD~~~--~~~~~~~~p~i~~~~~~-~gid~~~~~i~v~p~~h~t~GGi~vd~~~~----------t~i~GLyAaGe~~~ 381 (541)
T PRK07804 315 YLDARG--IEGFARRFPTITASCRA-AGIDPVRQPIPVAPAAHYSCGGVVTDVYGR----------TSVPGLYAAGEVAC 381 (541)
T ss_pred EEeCcc--HHHHHHHhhHHHHHHHH-hCcCCcCCeEEEEHHHhhcCCCEEECCCCc----------ccCCCeEEcccccc
Confidence 999884 46677888888887764 799999999999999999999999999887 99999999999987
Q ss_pred ccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccc
Q 046556 433 ASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNA 512 (633)
Q Consensus 433 ~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~ 512 (633)
+++||+||++|+++.+++++|++||++|+++.+.... +.. .. . ...+...++.+++++||++||+++
T Consensus 382 ~g~hGa~~l~~~sl~~~~v~G~~ag~~aa~~~~~~~~----~~~-~~-~-------~~~~~~~~~~~~~~~l~~~m~~~~ 448 (541)
T PRK07804 382 TGVHGANRLASNSLLEGLVVGERAGAAAAAHAAAAGR----PRA-TP-A-------VGPEPGLLPALDRAELQRAMTRGA 448 (541)
T ss_pred cccCCCcccHHHHHHHHHHHHHHHHHHHHHhhcccCc----ccc-ch-h-------hcccccCchHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999887643211 100 00 0 012234568889999999999999
Q ss_pred eEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcc
Q 046556 513 AVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDE 592 (633)
Q Consensus 513 ~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~ 592 (633)
|++|++++|+++|.+|+++.... .+++.+++|++|||++|+++++|||+||||||+|||+|||++||
T Consensus 449 gi~R~~~~L~~al~~l~~~~~~~------------~~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~- 515 (541)
T PRK07804 449 GVLRSAAGLARAADRLAAGAPAR------------VVPGRADWEDTNLTLVARALVAAALARTESRGCHWREDFPDTDD- 515 (541)
T ss_pred CeEEcHHHHHHHHHHHHHHHhhc------------ccchhHHHHHHhHHHHHHHHHHHHHhcCCCcccccCCCCCccCh-
Confidence 99999999999999998864311 13567788999999999999999999999999999999999998
Q ss_pred cccceEEEEee-CCeeEE
Q 046556 593 NWMKHTLGYWE-NEKVRL 609 (633)
Q Consensus 593 ~~~~~~~~~~~-~g~~~~ 609 (633)
+|+|++++.++ ++.+.+
T Consensus 516 ~~~~~~~~~~~~~~~~~~ 533 (541)
T PRK07804 516 EWARSIVVRLADDGNLVV 533 (541)
T ss_pred hhhceEEEEEcCCCCeee
Confidence 89999988766 455544
No 27
>PRK09077 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1.3e-85 Score=725.44 Aligned_cols=513 Identities=33% Similarity=0.504 Sum_probs=428.0
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHH
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 124 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~ 124 (633)
+.++||||||+|+|||+||+.|++. ++|+||||....+|++.+++|+++...+ ..|+++.|+.|+++.+.+++|+++
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~--~~ds~e~~~~d~~~~g~~~~d~~~ 82 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLD--ETDSIESHVEDTLIAGAGLCDEDA 82 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccC--CCccHHHHHHHHHHHccCCCCHHH
Confidence 4679999999999999999999987 8999999998888888889998877654 468899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCcccccCC--C--cccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC-CC
Q 046556 125 IQYMCREAPKAVIELENYGLPFSRTED--G--KIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH-NT 199 (633)
Q Consensus 125 v~~~~~~~~~~~~~l~~~Gv~f~~~~~--g--~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~-gv 199 (633)
++.+++++++.++||+++|++|.+..+ | .+....+++++ ..|.++..+.+|..+...|.+++++. ||
T Consensus 83 v~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~--------~~r~~~~~~~~G~~i~~~L~~~~~~~~~I 154 (536)
T PRK09077 83 VRFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHS--------HRRILHAADATGKAVQTTLVERARNHPNI 154 (536)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCcc--------CCceEecCCCCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999987654 2 23333444443 34777888889999999999888765 89
Q ss_pred EEEEEEEEEEEEEcc-----CCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCc
Q 046556 200 QFFVEYFALDLIMNS-----DGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPL 274 (633)
Q Consensus 200 ~i~~~~~v~~L~~d~-----~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l 274 (633)
++++++.+++|+.++ +++|+||.+.+..+|+...|.|+.|||||||+++.|..+++++.+||||+.||+++||.+
T Consensus 155 ~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~~~~~~~~~tGdG~~mA~~aGA~l 234 (536)
T PRK09077 155 TVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYLYTTNPDIASGDGIAMAWRAGCRV 234 (536)
T ss_pred EEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCCCCcCCCCCCcHHHHHHHHcCCcC
Confidence 999999999999843 389999999876678888899999999999999999988899999999999999999999
Q ss_pred cCccccccccccccCC---cceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCe
Q 046556 275 EDLEFVQFHPTGIYGA---GCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDH 351 (633)
Q Consensus 275 ~~~e~~~~~p~~~~~~---~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~ 351 (633)
.+|||+||||+.++.+ ++++ ++.+++.|+++||.+|+||+++|++. .++.+|+++++++..++... |. +.
T Consensus 235 ~~me~~q~~pt~~~~~~~~~~l~-~e~~rg~g~~lvn~~G~RF~~~~~~~-~el~~rd~v~~ai~~~~~~~-g~----~~ 307 (536)
T PRK09077 235 ANMEFNQFHPTCLYHPQARSFLI-TEALRGEGAYLKLPDGTRFMPDFDER-AELAPRDIVARAIDHEMKRL-GA----DC 307 (536)
T ss_pred cCccceeEecceecCCCCCceee-cHHHcCCCCEEECCCCCCcccccCcc-cccCchhHHHHHHHHHHHhc-CC----Ce
Confidence 9999999999876532 3455 88889999999999999999999885 48999999999999888652 32 35
Q ss_pred EEEecCCCChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccc
Q 046556 352 IYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAA 431 (633)
Q Consensus 352 v~~d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a 431 (633)
+|+|+++.+++.+.++++.+.+.+.. .|+|+.++|+||.|..||++|||.||.+++ |+||||||||||+
T Consensus 308 v~ld~~~~~~~~~~~~~~~~~~~~~~-~g~d~~~~pi~v~p~~h~t~GGi~vd~~~~----------t~I~GLyAaGE~a 376 (536)
T PRK09077 308 VYLDISHKPADFIRQHFPTIYERCLE-LGIDITKEPIPVVPAAHYTCGGVMVDLHGR----------TDLDGLYAIGEVS 376 (536)
T ss_pred EEEECCCCcHHHHHHHChHHHHHHHH-hCcCCCCCceeeeeeeeEecCCeeECCCCc----------cccCCEEeccccc
Confidence 99999999988888889988877765 799999999999999999999999999987 9999999999998
Q ss_pred cccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhcc
Q 046556 432 CASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNN 511 (633)
Q Consensus 432 ~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~ 511 (633)
|+|+||+||||||+|++|+|||++||++|+++..........+.. ....+. .......+...+.+||++||+|
T Consensus 377 ~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~l~~~m~~~ 449 (536)
T PRK09077 377 YTGLHGANRMASNSLLECLVYGRSAAEDILSRLPKAPMPPTLPAW----DESRVT---DSDEEVVIQHNWHELRLFMWDY 449 (536)
T ss_pred ccccCCCccchhhhHHHHHHHHHHHHHHHHHhhcccCcccccchh----hhhhhh---ccccccchhHHHHHHHHHHHhC
Confidence 779999999999999999999999999999875321101111100 000000 1111122345567999999999
Q ss_pred ceEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCc
Q 046556 512 AAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDD 591 (633)
Q Consensus 512 ~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~ 591 (633)
+|++|++++|++++.+|++|++++........ ....++|++|||++|+++++|||+||||||+|||+|||++||
T Consensus 450 ~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~------~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~~~ 523 (536)
T PRK09077 450 VGIVRTTKRLERALHRIRLLQQEIDEYYANFR------VSNNLLELRNLVQVAELIVRCAMERKESRGLHYTLDYPELLP 523 (536)
T ss_pred CCEEECHHHHHHHHHHHHHHHHHHHHHhhhcc------cCHHHHHHHHHHHHHHHHHHHHHhCCCCccceecCCCccccc
Confidence 99999999999999999999876643221110 112467999999999999999999999999999999999998
Q ss_pred ccccceEEE
Q 046556 592 ENWMKHTLG 600 (633)
Q Consensus 592 ~~~~~~~~~ 600 (633)
+ |.++++.
T Consensus 524 ~-~~~~~~~ 531 (536)
T PRK09077 524 E-AGPTILS 531 (536)
T ss_pred c-cCceEee
Confidence 6 8776643
No 28
>PRK08071 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1.7e-83 Score=703.62 Aligned_cols=503 Identities=36% Similarity=0.549 Sum_probs=421.5
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
.++||||||+|.|||+||++|++ |++|+||||....+|++.+++|+++.... ..|+++.|+.|+++.+.+++|++++
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~--~~ds~e~~~~d~~~~g~~~~d~~~v 78 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVA--TYDSPNDHFEDTLVAGCHHNNERAV 78 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceeccc--CCCCHHHHHHHHHHhccCcCCHHHH
Confidence 36899999999999999999987 89999999998888888889998877654 4688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEc-cCCchHHHHHHHHHHHHhCCCEEEEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACA-ADRTGHALLHTLYGQAMKHNTQFFVE 204 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~-~~~~g~~l~~~l~~~a~~~gv~i~~~ 204 (633)
+.+++++++.++||+++|++|.++.+|.+....+++++. .|.++. .+.+|..++..|.+.++ .||+++++
T Consensus 79 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~gd~~g~~i~~~L~~~~~-~gV~i~~~ 149 (510)
T PRK08071 79 RYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRK--------RRILHAGGDATGKNLLEHLLQELV-PHVTVVEQ 149 (510)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccC--------CeEEecCCCCcHHHHHHHHHHHHh-cCCEEEEC
Confidence 999999999999999999999987777655545555543 366665 36788899999988876 69999999
Q ss_pred EEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccccccc
Q 046556 205 YFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHP 284 (633)
Q Consensus 205 ~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p 284 (633)
+.+++|+. ++++|+||.+.+ .+|+...++|+.|||||||++.+|..+++++.+||||+.||+++|+.+.+|||+||||
T Consensus 150 ~~v~~Li~-~~g~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~~~~~t~~~~~tGdG~~ma~~aGa~l~~me~~q~~p 227 (510)
T PRK08071 150 EMVIDLII-ENGRCIGVLTKD-SEGKLKRYYADYVVLASGGCGGLYAFTSNDKTITGDGLAMAYRAGAELVDLEFIQFHP 227 (510)
T ss_pred eEhhheee-cCCEEEEEEEEE-CCCcEEEEEcCeEEEecCCCcccccCCCCCCCcccHHHHHHHHcCCceeCCcceeEee
Confidence 99999998 678999999877 4777778999999999999999998888999999999999999999999999999999
Q ss_pred ccccCCcc---eeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCCh
Q 046556 285 TGIYGAGC---LLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPP 361 (633)
Q Consensus 285 ~~~~~~~~---~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~ 361 (633)
+.+...+. ++ ++.+++++++++|.+|+||+++|+|. .++.+|+++++++..++.+++ .+|+|+++++
T Consensus 228 t~~~~~~~~~~li-~e~~rg~g~~lvn~~G~RF~~~~~~~-~e~~~rd~v~~ai~~~~~~~~-------~v~ld~~~~~- 297 (510)
T PRK08071 228 TMLYANGRCVGLV-SEAVRGEGAVLINEDGRRFMMGIHPL-ADLAPRDVVARAIHEELLSGE-------KVYLNISSIQ- 297 (510)
T ss_pred eEecCCCccceee-chhhcCCceEEECCCCCCCccccCcc-ccCCCHHHHHHHHHHHHHcCC-------eEEEeccchH-
Confidence 87655442 44 78888999999999999999999886 588999999999999887653 4899998875
Q ss_pred hHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCC
Q 046556 362 DVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRL 441 (633)
Q Consensus 362 ~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rl 441 (633)
.+.+++|.+.+.+.. .|+||.++++||.|..||++|||.||.+++ |+||||||||||+|+++||+||+
T Consensus 298 -~~~~~~~~i~~~~~~-~gid~~~~~i~v~p~~h~~~GGi~vd~~~~----------t~I~GLyAaGE~a~~g~hGanrl 365 (510)
T PRK08071 298 -NFEERFPTISALCEK-NGVDIETKRIPVVPGAHFLMGGVKTNLDGE----------TSIPGLYAIGEVACTGVHGANRL 365 (510)
T ss_pred -HHHHHhhHHHHHHHH-hCcCCCCCceeEehhheEEcCCEEECCCCc----------ccCCCeEEcccccccccCCCccc
Confidence 466788888777765 799999999999999999999999999987 99999999999987799999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHH
Q 046556 442 GANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETL 521 (633)
Q Consensus 442 gg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l 521 (633)
+||+|++|++||++||++|+.+..... ..+.. .. . .. ....++...+++||++||+|+|++|++++|
T Consensus 366 ~g~sl~~~~v~G~~Ag~~aa~~~~~~~---~~~~~--~~--~--~~----~~~~~~~~~~~~l~~~m~~~~gi~R~~~~L 432 (510)
T PRK08071 366 ASNSLLEGLVFGKRAAEHILTKATKPR---LNPFA--EK--E--KK----FIVLNHLPTKEEIQEKMMKYVGIVRTEQSL 432 (510)
T ss_pred chHHHHHHHHHHHHHHHHHHhhccCCc---ccchh--hh--h--hh----hccccchHHHHHHHHHHHhhccEEEcHHHH
Confidence 999999999999999999987653211 11100 00 0 00 000122334679999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceEEEE
Q 046556 522 EEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGY 601 (633)
Q Consensus 522 ~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~~~~ 601 (633)
++++.+|++|+.+...+... .....++|++|||++|+++++|||+|+||||+|||+|||++ +|++++++.
T Consensus 433 ~~a~~~l~~l~~~~~~~~~~-------~~~~~~~e~~~~l~~a~~~~~aal~R~ESRG~H~R~D~P~~---~~~~~~~~~ 502 (510)
T PRK08071 433 SEAKRWLEKYGVRNMILDHD-------ALTNEEIELSHMLTVAKLIVVSALQRTESRGGHYRSDYPHR---NWRGKEIVR 502 (510)
T ss_pred HHHHHHHHHHHHhhhhcccc-------ccchhHHHHHhHHHHHHHHHHHHHhCCCCccceecCCCCcc---ccCceEEEe
Confidence 99999999997332111111 01146789999999999999999999999999999999997 899888554
Q ss_pred eeCCeeE
Q 046556 602 WENEKVR 608 (633)
Q Consensus 602 ~~~g~~~ 608 (633)
.. ++++
T Consensus 503 ~~-~~~~ 508 (510)
T PRK08071 503 TK-RKLQ 508 (510)
T ss_pred cC-Ccee
Confidence 33 4443
No 29
>PRK07512 L-aspartate oxidase; Provisional
Probab=100.00 E-value=1.1e-83 Score=705.64 Aligned_cols=484 Identities=33% Similarity=0.459 Sum_probs=414.7
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC-CCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCH
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP-TRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQ 122 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~-~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~ 122 (633)
...++||||||+|+|||+||++|+ |.+|+||||... .+|++.+++||++...+ ..|+++.++.|+++.+.+++|+
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~--~~ds~e~~~~d~~~~~~g~~d~ 81 (513)
T PRK07512 6 RILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGASSAWAQGGIAAALG--PDDSPALHAADTLAAGAGLCDP 81 (513)
T ss_pred cCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcchHHhhhccccccC--CCCCHHHHHHHHHHhhCCCCCH
Confidence 456899999999999999999997 579999999876 45678888899887655 4688999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEc-cCCchHHHHHHHHHHHHhC-CCE
Q 046556 123 DAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACA-ADRTGHALLHTLYGQAMKH-NTQ 200 (633)
Q Consensus 123 ~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~-~~~~g~~l~~~l~~~a~~~-gv~ 200 (633)
++++.+++++++.++||+++|++|.+..+|.+....+++++. .|.++. .+.+|..++..|.+.+++. ||+
T Consensus 82 ~~v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~--------~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~ 153 (513)
T PRK07512 82 AVAALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSR--------RRIVHVGGDGAGAAIMRALIAAVRATPSIT 153 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccC--------CcEEEcCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 999999999999999999999999987777665544555443 366665 4678899999999988875 899
Q ss_pred EEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccc
Q 046556 201 FFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFV 280 (633)
Q Consensus 201 i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~ 280 (633)
++.++.+++|+. ++++|+||.+.+ +++...+.|+.|||||||++++|..+++++.+||||+.||+++||.+.+|||+
T Consensus 154 i~~~~~v~~Li~-~~g~v~Gv~~~~--~~~~~~i~Ak~VVLATGG~~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~me~~ 230 (513)
T PRK07512 154 VLEGAEARRLLV-DDGAVAGVLAAT--AGGPVVLPARAVVLATGGIGGLYAVTTNPAGAFGQGLALAARAGAVIADPEFV 230 (513)
T ss_pred EEECcChhheee-cCCEEEEEEEEe--CCeEEEEECCEEEEcCCCCcCCCCCCCCCCCCchHHHHHHHHcCCcEeCCcce
Confidence 999999999998 578999998864 44455789999999999999999888899999999999999999999999999
Q ss_pred ccccccccC---CcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecC
Q 046556 281 QFHPTGIYG---AGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLN 357 (633)
Q Consensus 281 ~~~p~~~~~---~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~ 357 (633)
||||+.+.. .+.++ ++.+++.|+++||.+|+||+++|+|. .++.+|+++++++..++.+++ .+|+|.+
T Consensus 231 q~~Pt~~~~~~~~~~l~-~~~~rg~g~~lvn~~G~RF~~~~~~~-~e~~~rd~v~~ai~~~~~~g~-------~v~ld~~ 301 (513)
T PRK07512 231 QFHPTAIDIGRDPAPLA-TEALRGEGAILINEDGERFMADIHPG-AELAPRDVVARAVFAEIAAGR-------GAFLDAR 301 (513)
T ss_pred EEEeeeecCCCCCccee-ehhhhCCceEEECCCCCChhhhcCCc-cccCcHHHHHHHHHHHHhcCC-------EEEEecc
Confidence 999987643 23455 88899999999999999999999886 589999999999999988764 3799999
Q ss_pred CCChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccC
Q 046556 358 HLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHG 437 (633)
Q Consensus 358 ~~~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~G 437 (633)
+.+.+.+.++++.+.+.+.. .|+||.++++||.|..||++|||.||.+++ |+||||||||||+|+|+||
T Consensus 302 ~~~~~~~~~~~~~i~~l~~~-~gid~~~~~i~v~p~~h~t~GGi~vd~~~~----------t~I~GLyAaGE~a~~G~hG 370 (513)
T PRK07512 302 AALGAHFATRFPTVYAACRS-AGIDPARQPIPVAPAAHYHMGGIAVDADGR----------SSLPGLWAAGEVASTGLHG 370 (513)
T ss_pred ccchHHHHHHhhHHHHHHHH-hCcCCCCCceEEecccCEEcCCEEECCCCc----------cccCCEEecccccccCCCc
Confidence 98877788889988887765 799999999999999999999999999987 9999999999998789999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeC
Q 046556 438 ANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRT 517 (633)
Q Consensus 438 a~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~ 517 (633)
+||++||+|++|+|||++||++|+++..... .+.... . .. ..+.+..++||++||+|+|++|+
T Consensus 371 anrl~gnsl~~~~v~G~~ag~~aa~~~~~~~--~~~~~~--~------------~~-~~~~~~~~~l~~~m~~~~gi~R~ 433 (513)
T PRK07512 371 ANRLASNSLLEAVVFAARAAEDIAGTPAAAA--APLSAA--A------------AP-ALDPADLALLRPIMSRHVGVLRD 433 (513)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhccc--cccccc--c------------cc-cccHHHHHHHHHHHHhhccEEEc
Confidence 9999999999999999999999998754321 111000 0 00 12345567899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccce
Q 046556 518 QETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKH 597 (633)
Q Consensus 518 ~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~ 597 (633)
+++|+++|.+|++|+++. .+++||+++|+++++|||+|+||||+|||+|||++||+ |.++
T Consensus 434 ~~~L~~al~~l~~l~~~~-------------------~~~~~~~~~a~~~~~aal~R~ESRG~H~R~D~p~~~~~-~~~~ 493 (513)
T PRK07512 434 ADGLRRAIAALLPLEAGA-------------------GPAADPATVALLIAVAALAREESRGAHFRTDFPLTAPA-ARRT 493 (513)
T ss_pred HHHHHHHHHHHHHHHHHH-------------------HHHHhHHHHHHHHHHHHHhCCCCccceeCCcCCccchh-hcce
Confidence 999999999999997532 13579999999999999999999999999999999987 7565
Q ss_pred EE
Q 046556 598 TL 599 (633)
Q Consensus 598 ~~ 599 (633)
++
T Consensus 494 ~~ 495 (513)
T PRK07512 494 RL 495 (513)
T ss_pred EE
Confidence 54
No 30
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=100.00 E-value=2.2e-81 Score=685.97 Aligned_cols=484 Identities=35% Similarity=0.561 Sum_probs=413.7
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
+++||||||+|+|||+||+.|++.|. |+||||....+|++.+++|++++... ..|+++.++.|+++.+.+++|++++
T Consensus 1 ~~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~--~~ds~e~~~~d~~~~~~~~~d~~~v 77 (488)
T TIGR00551 1 HSCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLA--ETDSIDSHVEDTLAAGAGICDREAV 77 (488)
T ss_pred CCccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeec--CCCCHHHHHHHHHHhcCCcCCHHHH
Confidence 36899999999999999999999998 99999998888888899999887764 4688999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHh-CCCEEEEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMK-HNTQFFVE 204 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~-~gv~i~~~ 204 (633)
+.+++++++.++||+++|++|.+..+|.+....+++++. +|.++..+.+|..+...|.+.+++ .|++++++
T Consensus 78 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~--------~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~ 149 (488)
T TIGR00551 78 EFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSY--------RRILHAADATGREVITTLVKKALNHPNIRIIEG 149 (488)
T ss_pred HHHHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCC--------CeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEEC
Confidence 999999999999999999999987777665555555543 477777777899999999999987 69999999
Q ss_pred EEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccccccc
Q 046556 205 YFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHP 284 (633)
Q Consensus 205 ~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p 284 (633)
+.|++|+. ++++|+|+.+.+. ++...+.|+.||+||||++.+|..+++++.+||||+.||+++|+.+.+|||+||||
T Consensus 150 ~~v~~l~~-~~g~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~~~~~~~~~~~~~~tGdG~~~A~~aGa~l~~me~~q~~p 226 (488)
T TIGR00551 150 ENALDLLI-ETGRVVGVWVWNR--ETVETCHADAVVLATGGAGKLYQYTTNPKISTGDGIALAWRAGVRVRDLEFNQFHP 226 (488)
T ss_pred eEeeeeec-cCCEEEEEEEEEC--CcEEEEEcCEEEECCCcccCCCCCcCCCCccCcHHHHHHHHcCCcEECCcceEEEe
Confidence 99999998 5789999988752 55567899999999999999999889999999999999999999999999999999
Q ss_pred ccccCCc---ceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCCh
Q 046556 285 TGIYGAG---CLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPP 361 (633)
Q Consensus 285 ~~~~~~~---~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~ 361 (633)
+.+...+ +++ ++.+++.+++++|.+|+||+++|+|. .++.+|+++++++..++.++.+. .+|+|.++++
T Consensus 227 t~~~~~~~~~~l~-~~~~~g~g~~lvn~~G~RF~~~~~~~-~el~~rd~v~~ai~~~~~~~~~~-----~v~ld~~~~~- 298 (488)
T TIGR00551 227 TALYKPRARYFLI-TEAVRGEGAYLVDRDGTRFMADFHPR-GELAPRDIVARAIDHEMKRGGAD-----CVFLDASGIE- 298 (488)
T ss_pred eEecCCCCcceee-ehhhcCCceEEECCCCCChhhccCcc-cccCchHHHHHHHHHHHHhcCCC-----eEEecCcchH-
Confidence 8665432 345 78888999999999999999999986 48999999999999998876432 5899999875
Q ss_pred hHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCC
Q 046556 362 DVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRL 441 (633)
Q Consensus 362 ~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rl 441 (633)
.+.++++.+.+.+.. .|+||.++|+||.|..||++|||.||.+++ |+||||||||||+|+|+||+||+
T Consensus 299 -~~~~~~~~~~~~~~~-~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~----------t~I~GLyAaGE~a~~g~hGanrl 366 (488)
T TIGR00551 299 -AFRQRFPTIYAKCLG-AGIDPTREPIPVVPAAHYTCGGISVDDHGR----------TTVPGLYAIGEVACTGLHGANRL 366 (488)
T ss_pred -HHHHHcchHHHHHHH-hCCCCCCCceecccccEEecCCEEECCCCc----------ccCCCEEECccccccccCccccc
Confidence 377788888887765 799999999999999999999999999988 99999999999987899999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHH
Q 046556 442 GANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETL 521 (633)
Q Consensus 442 gg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l 521 (633)
+||+|++|+|||++||++|+++..... . .+ .. . ..... ..........+.+++.+||++||+++|++|++++|
T Consensus 367 ~g~sl~~~~v~G~~Ag~~aa~~~~~~~-~--~~-~~-~-~~~~~-~~~~~~~~~~~~~~~~~l~~~m~~~~gi~r~~~~l 439 (488)
T TIGR00551 367 ASNSLLECLVFGWSAAEDISRRPPYAS-D--IS-TS-P-PWDEP-RSENPDDRVVLQHNMSELRSFMWDYAGIVRLTKSL 439 (488)
T ss_pred chhHHHHHHHHHHHHHHHHHhhccccC-c--cc-hh-h-hhhhh-hhcccccccchHHHHHHHHHHHhheeeEEEcHHHH
Confidence 999999999999999999987643210 0 10 00 0 00100 11111122346788899999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCC
Q 046556 522 EEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFT 587 (633)
Q Consensus 522 ~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P 587 (633)
++++.+|++|++++. .++++|||++|+++++|||+||||||+|||+|||
T Consensus 440 ~~al~~~~~l~~~~~-----------------~~~~~~~~~~a~~~~~~al~R~ESrG~H~R~D~p 488 (488)
T TIGR00551 440 ERALRRLVMLQQEID-----------------EYELRNLVQVAKLITRSALMREESRGAHFRLDYP 488 (488)
T ss_pred HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhCCCCccceecCCCC
Confidence 999999999987653 1246999999999999999999999999999999
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-81 Score=728.46 Aligned_cols=538 Identities=24% Similarity=0.328 Sum_probs=423.4
Q ss_pred cccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCC-cccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCC
Q 046556 43 IVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS-HTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGD 121 (633)
Q Consensus 43 ~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g-~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~ 121 (633)
.+..++||||||||.|||+||+.|++.|++|+||||.....+ ++....||++.... ...|+++.|+.|+++.+.+++|
T Consensus 9 ~~~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~~~sg~~~~g~~gi~~~~~-~~~ds~e~~~~Dt~~~g~gl~d 87 (897)
T PRK13800 9 ALRLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHVRHSGALAMGMDGVNNAVI-PGKAEPEDYVAEITRANDGIVN 87 (897)
T ss_pred cceeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccccCCCcccCCchhhhcccC-CCccCHHHHHHHHHhhcCCCCC
Confidence 455789999999999999999999999999999999876332 33333445543322 1258899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC----
Q 046556 122 QDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH---- 197 (633)
Q Consensus 122 ~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~---- 197 (633)
+++++.+++++++.++||+++|++|.+..+|.+....+... ......+.+|..+...|.+.+++.
T Consensus 88 ~~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~-----------~~~~~~~~tG~~i~~~L~~~l~~~~~~~ 156 (897)
T PRK13800 88 QRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRS-----------GSYVLPMPEGKDVKKALYRVLRQRSMRE 156 (897)
T ss_pred HHHHHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccC-----------CCccccCCCchhHHHHHHHHHHHhhhcC
Confidence 99999999999999999999999999887775543221100 001113457788888787776654
Q ss_pred CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC------CCC-CCCCCCCchHHHHHHHHc
Q 046556 198 NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA------YFS-ATSAHTCTGDGNAMVSRA 270 (633)
Q Consensus 198 gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~------~~~-~~~~~~~tGdg~~~a~~a 270 (633)
+|++++++.+++|+. ++|+|+||++++..+|+.+.|.||.|||||||++++ |.. +++.+.+||||++||+++
T Consensus 157 ~i~~~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~~~p~~~~~~~~~~~~~~tGDG~amA~ra 235 (897)
T PRK13800 157 RIRIENRLMPVRVLT-EGGRAVGAAALNTRTGEFVTVGAKAVILATGPCGRLGLPASGYLYGTYENPTNAGDGYSMAYHA 235 (897)
T ss_pred CcEEEeceeeEEEEe-eCCEEEEEEEEecCCCcEEEEECCEEEECCCccccCCCCCcccccCccCCCCcccHHHHHHHHc
Confidence 789999999999998 689999999988778998899999999999999987 322 233458999999999999
Q ss_pred CCCccCccccccccccccCCcceeeeccccCCCcEEECCCCCccccc-cCCccccccchhHHhHHHHHHHHhcCCCCCCC
Q 046556 271 GLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMER-YAPTAKDLASRDVVSRSMTMEIREGRGVGPLK 349 (633)
Q Consensus 271 Ga~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~-~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~ 349 (633)
||.+.+|||+||||+.....+... .+.+++.|++++|.+|+|||++ |.+ + .+...+..++.+|+|
T Consensus 236 GA~l~~me~vqfhPt~~~~~g~~~-~~~~~~~G~~lvN~~GeRFm~~~~~~-------~-~i~~~i~~ei~~g~g----- 301 (897)
T PRK13800 236 GAELSGIECFQINPLIKDYNGPAC-AYVANPFGGYQVNAQGERFVDSDYWS-------G-QMMAEVKREIESARG----- 301 (897)
T ss_pred CCcccCceeEEeeccccCCCCchh-heeecccCcEEECCCCCccccCcccc-------h-hHHHHHHHHHhcCCC-----
Confidence 999999999999998764444444 5567788999999999999974 322 2 123356677777765
Q ss_pred CeEEEecCCCChhHHHHHhHHHHHHHH--------HHcCCCCCCCCeec-----cccccccccCcccCCCCceeeecCCC
Q 046556 350 DHIYLHLNHLPPDVLKERLPGISETAA--------IFAGVDVTKEPIPV-----LPTVHYNMGGIPTNHHGEVVTIKGDD 416 (633)
Q Consensus 350 ~~v~~d~~~~~~~~l~~~~~~~~~~~~--------~~~G~d~~~~~i~v-----~p~~~~~~GGi~vd~~~~vl~~d~~~ 416 (633)
+||+|+++++++.++ +|+.+...+. ...|+||.++++++ .|..|++||||.||.+++
T Consensus 302 -~vyLD~~~l~~e~~~-~l~~~~~~~~~p~~~~~~~~~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~-------- 371 (897)
T PRK13800 302 -PIYLKVSHLPEETLS-ALESILHTTERPTRGTFHANRGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHAR-------- 371 (897)
T ss_pred -CEEEECCCCCHHHHH-HHHHhhhhcccchHHHHHHhcCCCcccccceecccccccccCCCcceEEecCCCc--------
Confidence 399999999988766 6776654431 12699999999996 455678889999999887
Q ss_pred CCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHH-HHHhhhcCCCC
Q 046556 417 PDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAW-LDKIRNSNGSI 495 (633)
Q Consensus 417 ~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 495 (633)
|+||||||||||+|+ ++|++.+|++||++||++++++++........+....+...+. +.++...+ +.
T Consensus 372 --T~v~GLfAaGE~a~~--------~~nsl~~a~v~G~~Ag~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 440 (897)
T PRK13800 372 --TTVPGLYAAGDLACV--------PHNYMIGAFVFGDLAGAHAAGTLAEVPAPGELPADQLAEAHELIYRPLRHPD-GP 440 (897)
T ss_pred --ccCCCeEechhccCc--------chhhhhhHHHhHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhchhhccC-CC
Confidence 999999999999863 2599999999999999999998753211111221111112122 22222222 24
Q ss_pred ChHHHHHHHHHHhhccceEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCc
Q 046556 496 PTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARK 575 (633)
Q Consensus 496 ~~~~~~~~l~~~m~~~~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ 575 (633)
++.+++++||++||+|+||+|++++|++||++|++|+++++++.+.+ |++|++++|++|||++|++|++|||+||
T Consensus 441 ~~~~~~~~l~~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~-----~~~l~~~~e~~n~l~~a~~i~~aAl~R~ 515 (897)
T PRK13800 441 PQPQVEYKLRRFVNDYVAPPKTAAKLSIAVETFERMAAEIAGMGART-----PHELMRCAEVSFIRDCAEMAARSSLTRT 515 (897)
T ss_pred ChHHHHHHHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56689999999999999999999999999999999999888776655 6999999999999999999999999999
Q ss_pred CCccc--cccCCCCCCCcccccceEEEEee-CCeeEEeeeeccccccC-CcccccCCCCCCC
Q 046556 576 ESRGA--HAREDFTKRDDENWMKHTLGYWE-NEKVRLDYRPVHMNTLD-DEIESFPPKARVY 633 (633)
Q Consensus 576 ESRG~--h~R~D~P~~d~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 633 (633)
||||+ |||+|||++||++|+||+++++. +|+++++++||...+.. +.++.++|..|.|
T Consensus 516 ESRG~~~H~R~DyP~~~d~~w~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 577 (897)
T PRK13800 516 ESRWGLYHDRADLPERDDASWGYHLNLRKGDDGEMEFLKRPVAPYFVPVPELDDLPPVDRTV 577 (897)
T ss_pred cccCccccccCCCCCCChHhhhhheeeeecCCCcEEEEEecccceecchhhcCCCCCCCccc
Confidence 99999 99999999999999999998654 67899999998754433 3466799999987
No 32
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=100.00 E-value=2.3e-81 Score=691.22 Aligned_cols=521 Identities=24% Similarity=0.316 Sum_probs=398.0
Q ss_pred cEEEECCchHHHHHHHHHH----hCCCcEEEEeecCCCCCccccccc--ceeeecCCC-CcCCHHHHHHHHHhcCCCCCC
Q 046556 49 DAVVVGAGGAGLRAAIGLS----EHGFNTACITKLFPTRSHTVAAQG--GINAALGNM-TEDDWRWHMYDTVKGSDWLGD 121 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa----~~G~~V~vlEk~~~~~g~t~~~~G--g~~~~~~~~-~~d~~~~~~~d~~~~~~~~~~ 121 (633)
||||||||+|||+||+.|+ ++|++|+||||....++++ .++| +++..+... ..|+++.++.+++..+.+++|
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~~s~s-~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLERSGA-VAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCCCCCc-cccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 7899999999987765554 5666 444433321 247889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccC-CCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCE
Q 046556 122 QDAIQYMCREAPKAVIELENYGLPFSRTE-DGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQ 200 (633)
Q Consensus 122 ~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~-~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~ 200 (633)
+++++.+++++++.++||+++|++|.+.. +|.+. ..+.... ...|..+...+...+++.+++
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~--~~g~~~~---------------~~gG~~~~r~l~~~l~~~~~~ 142 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYV--REGRWQI---------------MIHGESYKPIVAEAAKNALGD 142 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccc--cCCCccc---------------CcCchhHHHHHHHHHHhCCCe
Confidence 99999999999999999999999998753 44321 1111100 112445555566666667789
Q ss_pred EEEEEEEEEEEEccC--CcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCC---------CCCCCchHHHHHHHH
Q 046556 201 FFVEYFALDLIMNSD--GTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSAT---------SAHTCTGDGNAMVSR 269 (633)
Q Consensus 201 i~~~~~v~~L~~d~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~---------~~~~~tGdg~~~a~~ 269 (633)
+++++.+++|+++++ |+|+||++.+..+|+...|.|++|||||||++.+|.+++ +++.+||||+.||++
T Consensus 143 i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ly~~~~~~~~~~~~~~~~~~TGdGi~mA~~ 222 (614)
T TIGR02061 143 IFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVNVYRPRSVGEGAGRAWYAVWNAGSTYTMCAQ 222 (614)
T ss_pred EEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccccccCCcccccccccccCCCCcCcHHHHHHHH
Confidence 999999999998433 799999998777888888999999999999999887643 267899999999999
Q ss_pred cCCCccCccccccccccccC----Cc--ceeeeccccCCCcEEECCCCCccccccCCcccccc----------chhHHhH
Q 046556 270 AGLPLEDLEFVQFHPTGIYG----AG--CLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLA----------SRDVVSR 333 (633)
Q Consensus 270 aGa~l~~~e~~~~~p~~~~~----~~--~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~----------~r~~~~~ 333 (633)
+||.+.+||| ||||+.+.. .+ +++ ++ ++++|.+|+|||.+|+|...++. +||++++
T Consensus 223 aGA~l~dme~-qf~pt~~~~~~~~~~~~~l~-~e------a~l~n~~Gerf~~~~~~~~~~~~~r~~~~~~~~~rd~var 294 (614)
T TIGR02061 223 AGAEMTQMEN-RFVPARFKDGYGPVGAWFLL-FK------AKATNGKGEEYCATNRAMLKPYEGRGYAKPHVIPTCLRNH 294 (614)
T ss_pred cCCCccCCcc-ceecceeccccCCCCceEEE-ee------eEEECCCCCChhhccchhhhhcccccccccCCCcHHHHHH
Confidence 9999999999 999987632 12 344 44 78999999999998877654443 4789999
Q ss_pred HHHHHHHhcCCCCCCCCeEEEecCCCC---------------hhHHHHHhHHHHHHHHHH--cCCCCCCCCeeccccccc
Q 046556 334 SMTMEIREGRGVGPLKDHIYLHLNHLP---------------PDVLKERLPGISETAAIF--AGVDVTKEPIPVLPTVHY 396 (633)
Q Consensus 334 ~i~~e~~~g~g~~~~~~~v~~d~~~~~---------------~~~l~~~~~~~~~~~~~~--~G~d~~~~~i~v~p~~~~ 396 (633)
+|..++.+|+|+ ||+|+++++ .+.+.+.++.....+..+ .|+||.++||||.|++||
T Consensus 295 ai~~e~~~g~g~------vyLD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GiD~~~~~ipV~PaaHy 368 (614)
T TIGR02061 295 MMLREMREGRGP------IYMDTKEALQDPFATDKKQQKHLEEEAWEDFLDMTVGQANLWAATNVDPEERGSEIMPTEPY 368 (614)
T ss_pred HHHHHHHcCCCC------EEeeccccchhhhhhcccccccccHHHHHHhccccHHHHHHHHHcCCCCcCCCcccccccCe
Confidence 999999998775 999988554 444555555444333332 499999999999999999
Q ss_pred ccc------CcccC---------CCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHH
Q 046556 397 NMG------GIPTN---------HHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVA 461 (633)
Q Consensus 397 ~~G------Gi~vd---------~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa 461 (633)
+|| ||.|| .+++.. ++.+.+|+||||||||||+|+++| |++||||+++.++|..|++++.
T Consensus 369 ~mGg~~~~~Gi~vd~~~~~~~~~~~~~~~--~~~~~~T~i~gLyA~Ge~~~~~~h---~l~~nsl~eg~~ag~~a~~~~~ 443 (614)
T TIGR02061 369 LMGSHSGCCGIWVSGPEDWVPEEYKVRAA--KVYNRMTTVEGLFTCGDGVGASPH---KFSSGSFTEGRIAAKAAVRWIL 443 (614)
T ss_pred ecCCcccccceeecccccccccccccccc--cccCCccccCCEEeceecccCcch---hhHHhHHHHHHHHHHHHHHHHH
Confidence 999 89887 122210 001134999999999999887888 4889998775555555554442
Q ss_pred HHhCCCCCCCCCccchhhhHH----HHHHHhh---hc--C-C----CCChHHHHHHHHHHhhccceEe-----eCHHHHH
Q 046556 462 EIQRPGEKQKPLENNAGERTV----AWLDKIR---NS--N-G----SIPTSKIRLNMQRVMQNNAAVF-----RTQETLE 522 (633)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~--~-~----~~~~~~~~~~l~~~m~~~~~~~-----r~~~~l~ 522 (633)
......+......+... ..+..+. .. . . ..++.+++++||++||+|+|++ ||+++|+
T Consensus 444 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~Gi~~~~~~R~~~~L~ 519 (614)
T TIGR02061 444 ----DHKDFKPEFDATAEELKKEIYRPMENYEVYKNASTAPVVNPNYINPKQGLMRLQKCMDEYGGGVTTYYMTNEALLD 519 (614)
T ss_pred ----hCCCCCCCChhHHHHHHHHhhhhHHHHHhhhccccCCCcCccCCCHHHHHHHHHHHHHhhcCccccccccCHHHHH
Confidence 21111111111111111 1111111 10 1 1 1346688999999999999999 9999999
Q ss_pred HHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCc--cccccCCCCCCCcccccceEEE
Q 046556 523 EGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESR--GAHAREDFTKRDDENWMKHTLG 600 (633)
Q Consensus 523 ~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESR--G~h~R~D~P~~d~~~~~~~~~~ 600 (633)
.||.+|++|+++++++.+.+ +++|++++|++|||++|+++++|||+|+||| |+|||+|||++||++|++|+++
T Consensus 520 ~al~~l~~l~~~~~~~~~~~-----~~~~~~a~el~n~l~~a~~i~~aal~R~ESR~~G~H~R~DyP~~~d~~w~~~~~~ 594 (614)
T TIGR02061 520 TGLKLMAMLEEDLEKLAARD-----LHELLRAWELYHRLWTVEAHMQHILFRKETRWPGYYYRADFLGLDDENWKCFVNS 594 (614)
T ss_pred HHHHHHHHHHHHHhcccCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhCcCcCCCCccccCCCCCCCchhhhceEEE
Confidence 99999999998887776655 3899999999999999999999999999999 9999999999999999999987
Q ss_pred Eee--CCeeEEeeeecc
Q 046556 601 YWE--NEKVRLDYRPVH 615 (633)
Q Consensus 601 ~~~--~g~~~~~~~~~~ 615 (633)
+++ +|+++++++|+.
T Consensus 595 ~~~~~~g~~~~~~~~~~ 611 (614)
T TIGR02061 595 KYDPATGETTIEKKPYY 611 (614)
T ss_pred EEcCCCCceEEEeeccc
Confidence 764 489999999986
No 33
>PRK08275 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.3e-80 Score=684.81 Aligned_cols=520 Identities=23% Similarity=0.327 Sum_probs=411.6
Q ss_pred ccccccEEEECCchHHHHHHHHHHhC--CCcEEEEeecCCCCCccc-ccccceeeecCCCCcCCHHHHHHHHHhcCCCCC
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFPTRSHTV-AAQGGINAALGNMTEDDWRWHMYDTVKGSDWLG 120 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~~~~~g~t~-~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~ 120 (633)
...++||||||+|+|||+||+.|+++ |++|+||||....++++. ...+|++..... ..++++.|+.|+++.+.+++
T Consensus 6 ~~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~-~~d~~~~~~~d~~~~~~~~~ 84 (554)
T PRK08275 6 QEVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIP-GHATPEQYTKEITIANDGIV 84 (554)
T ss_pred eeEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhcc-CCCCHHHHHHHHHHhcCCCc
Confidence 35679999999999999999999987 689999999876544443 344555543321 24889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCE
Q 046556 121 DQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQ 200 (633)
Q Consensus 121 ~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~ 200 (633)
++++++.+++++++.++||+++|++|....+|.+..... + .+ ......+.+|..+...|.+.+++.|++
T Consensus 85 d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~--~--~~-------~~~~~~~~~G~~i~~~L~~~~~~~gv~ 153 (554)
T PRK08275 85 DQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKV--H--HM-------GSYVLPMPEGHDIKKVLYRQLKRARVL 153 (554)
T ss_pred cHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecc--c--cc-------CcccccCCChHHHHHHHHHHHHHCCCE
Confidence 999999999999999999999999998766654322110 0 00 000012346788999999999999999
Q ss_pred EEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC------CCC-CCCCCCCchHHHHHHHHcCCC
Q 046556 201 FFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA------YFS-ATSAHTCTGDGNAMVSRAGLP 273 (633)
Q Consensus 201 i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~------~~~-~~~~~~~tGdg~~~a~~aGa~ 273 (633)
+++++.|++|+.+++++|+||++.+..+|+...+.|+.|||||||++++ |.. +.+++.+||||+.||+++||.
T Consensus 154 i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~p~~~~~~~~~~~~~~tGdG~~mA~~aGA~ 233 (554)
T PRK08275 154 ITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRLGLPASGYLFGTYENPTNAGDGYAMAYHAGAE 233 (554)
T ss_pred EEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccccCCCCcCcccccccCCCccccHHHHHHHcCCc
Confidence 9999999999984378999999877667887789999999999999876 222 224568999999999999999
Q ss_pred ccCccccccccccccCCcceeeecccc-CCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeE
Q 046556 274 LEDLEFVQFHPTGIYGAGCLLLKVGSR-GEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHI 352 (633)
Q Consensus 274 l~~~e~~~~~p~~~~~~~~~~~~~~~~-g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v 352 (633)
+.+|||+||||+.....+... . .+. +.|++++|.+|+||+++|+|. ..++++|..++++|+|. |
T Consensus 234 l~~me~~q~~p~~~~~~~~~~-~-~~~~~~g~~lvn~~G~RF~~~~~~~-------~~~~~ai~~e~~~g~g~------v 298 (554)
T PRK08275 234 LANLECFQINPLIKDYNGPAC-A-YVTGPLGGYTANAKGERFIECDYWS-------GQMMWEFYQELQSGNGP------V 298 (554)
T ss_pred ccCceEEEEeceeecCCCCcc-c-eeccccCcEEeCCCCCccccccCCc-------hHHHHHHHHHHHcCCCc------E
Confidence 999999999997553322111 1 112 467899999999999988764 35788999999988653 9
Q ss_pred EEecCCCChhHHHHHhHHHHHH--------HHHHcCCCCCCCCeecccccc-----ccccCcccCCCCceeeecCCCCCC
Q 046556 353 YLHLNHLPPDVLKERLPGISET--------AAIFAGVDVTKEPIPVLPTVH-----YNMGGIPTNHHGEVVTIKGDDPDE 419 (633)
Q Consensus 353 ~~d~~~~~~~~l~~~~~~~~~~--------~~~~~G~d~~~~~i~v~p~~~-----~~~GGi~vd~~~~vl~~d~~~~~T 419 (633)
|+|+++++++.+.. ++.+... .....|+||.++|+||.|++| |+||||.||.+++ |
T Consensus 299 ~ld~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~g~D~~~~~i~v~p~~~~~~g~~~~Ggi~~d~~~~----------t 367 (554)
T PRK08275 299 FLKLDHLAEETIQT-IETILHTNERPSRGRFHEGRGTDYRQQMVEMHISEIGFCSGHSASGVWVNEKAE----------T 367 (554)
T ss_pred EEECCCCCHHHHHH-HHhhhhhcccchHHHHHHHcCCCcccCcccccCCCceeecccccCcEEECCCCc----------c
Confidence 99999999876542 4433311 112379999999999999877 4667999999887 9
Q ss_pred cccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHH
Q 046556 420 VVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSK 499 (633)
Q Consensus 420 ~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (633)
+||||||||||+|.+ +|++.+|+++|++||+.|+++++... ....+....+...+.+...+...++.+|.+
T Consensus 368 ~i~gl~a~Ge~~~~~--------~~~~~~~~~~G~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (554)
T PRK08275 368 TVPGLYAAGDMASVP--------HNYMLGAFTYGWFAGENAAEYVAGRD-LPEVDAAQVEAERARVLAPLHREDGLPPAQ 438 (554)
T ss_pred CCCCEEECcccCCch--------hHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHhccccccCCCCHHH
Confidence 999999999987422 58999999999999999999875421 111111111222222222233344567899
Q ss_pred HHHHHHHHhhccceEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCcc
Q 046556 500 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRG 579 (633)
Q Consensus 500 ~~~~l~~~m~~~~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG 579 (633)
++++||++||+|+|++|++++|++||++|++|+++++++.+.| +++|++++|++|||++|+++++|||+||||||
T Consensus 439 ~~~~lq~~m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~-----~~~~~~~~e~~n~l~~a~~i~~aal~R~ESRG 513 (554)
T PRK08275 439 VEYKLRRLVNDYLQPPKVTRKMEIGLQRFAEIREDLERIKARD-----PHELMRALEVSSIRDCAEMAARASLFRTESRW 513 (554)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHHHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999999999999888776666 38999999999999999999999999999999
Q ss_pred c--cccCCCCCCCcccccceEEEEee-CCeeEEeeeecc
Q 046556 580 A--HAREDFTKRDDENWMKHTLGYWE-NEKVRLDYRPVH 615 (633)
Q Consensus 580 ~--h~R~D~P~~d~~~~~~~~~~~~~-~g~~~~~~~~~~ 615 (633)
+ |||+|||++||++|+|++++++. +|+++++++|+.
T Consensus 514 ~~~H~R~DyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (554)
T PRK08275 514 GLYHYRVDFPERNDAEWFCHTHLRKDEDGRMVSFKRPVE 552 (554)
T ss_pred ccccccCCCCCCChhhhceeeEEEEcCCCceEEEeeccC
Confidence 8 99999999999999999988864 688999999885
No 34
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=100.00 E-value=5.2e-80 Score=687.51 Aligned_cols=527 Identities=23% Similarity=0.300 Sum_probs=405.2
Q ss_pred cccccccEEEECCchHHHHHHHHHHhC--CCcEEEEeecCCCCCccccccc--ceeeecCCCCcCCHHHHHHHHHhcCCC
Q 046556 43 IVDHTYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFPTRSHTVAAQG--GINAALGNMTEDDWRWHMYDTVKGSDW 118 (633)
Q Consensus 43 ~~~~~~DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~~~~~g~t~~~~G--g~~~~~~~~~~d~~~~~~~d~~~~~~~ 118 (633)
....++||||||+|+|||+||+.|++. |++|+||||....++++ .++| +++...+ ..++++.++.++++.+.+
T Consensus 7 ~~~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~--~~ds~e~~~~d~~~~~~~ 83 (608)
T PRK06854 7 VVEVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIG--EGETPEDYVRYVRKDLMG 83 (608)
T ss_pred cceeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccc--cCCCHHHHHHHHHHhccC
Confidence 345679999999999999999999998 99999999987655544 3333 2333232 356888999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCC
Q 046556 119 LGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHN 198 (633)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~g 198 (633)
++++++++.+++++++.++||+++|++|....+|.+.. .++. + ....|..+...|.+.+++.+
T Consensus 84 ~~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~---~g~~----------~----~~~~G~~~~~~L~~~a~~~g 146 (608)
T PRK06854 84 IVREDLVYDIARHVDSVVHLFEEWGLPIWKDENGKYVR---RGRW----------Q----IMINGESYKPIVAEAAKKAL 146 (608)
T ss_pred CCCHHHHHHHHHhHHHHHHHHHHcCCeeeecCCCCccc---cCCc----------c----CCCChHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998766654332 1100 0 01246778888888888775
Q ss_pred -CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCC---------CCCCCchHHHHHHH
Q 046556 199 -TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSAT---------SAHTCTGDGNAMVS 268 (633)
Q Consensus 199 -v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~---------~~~~~tGdg~~~a~ 268 (633)
+++++++.|++|+. ++++|+||.+++..+++...+.|+.||+||||++.+|.+++ +++.+||||+.||+
T Consensus 147 gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~~~~~~~~~~~~~~~~~~~~tGDGi~mA~ 225 (608)
T PRK06854 147 GDNVLNRVFITDLLV-DDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAGIYRPRSPGEGRGRMWYPPFNTGSGYAMGI 225 (608)
T ss_pred CCEEEeCCEEEEEEE-eCCEEEEEEEEEccCCcEEEEECCEEEECCCchhhccCCCCcccccccccCCCCCccHHHHHHH
Confidence 99999999999998 57899999887666787778999999999999998877643 25679999999999
Q ss_pred HcCCCccCccccccccccccC----CcceeeeccccCCCcEEECCCCCccccccCCccc--------cccchhHHhHHHH
Q 046556 269 RAGLPLEDLEFVQFHPTGIYG----AGCLLLKVGSRGEGGILRNSEGERFMERYAPTAK--------DLASRDVVSRSMT 336 (633)
Q Consensus 269 ~aGa~l~~~e~~~~~p~~~~~----~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~--------~l~~r~~~~~~i~ 336 (633)
++||.+.+||| ||||+.+.. .+.+ .+++|++++|.+|+|||++|+|... ++.+||+++++|.
T Consensus 226 ~aGA~l~~me~-qf~p~~~~~~~~~~~~~-----~~~~ga~lvn~~GeRFm~~y~p~~~~~~~~~~~~~~~rd~varai~ 299 (608)
T PRK06854 226 RAGAEMTTFEN-RFIPLRFKDGYGPVGAW-----FLLFKAKAVNALGEEYEAKNAAELKKYVPYADYKPIPTCLRNYATV 299 (608)
T ss_pred HhCCcccCCcc-eEeccccCCCCCCcccc-----eeecCceeeCCCCcccccCCchhhhccccccccCCCChhHHHHHHH
Confidence 99999999999 999987532 1222 2467899999999999999988543 4578999999999
Q ss_pred HHHHhcCCCCCCCCeEEEecCCCC------hhHHHHHh---HHHHHHHHHHcCCCCCCCCeeccccccccccC------c
Q 046556 337 MEIREGRGVGPLKDHIYLHLNHLP------PDVLKERL---PGISETAAIFAGVDVTKEPIPVLPTVHYNMGG------I 401 (633)
Q Consensus 337 ~e~~~g~g~~~~~~~v~~d~~~~~------~~~l~~~~---~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GG------i 401 (633)
.++++|+|+ ||+|+++++ .+.+++.+ +.....+. ..|+||.++||||.|++||+||| |
T Consensus 300 ~e~~~g~g~------v~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~giD~~~~~ipV~P~~Hy~mGG~~~~~Gi 372 (608)
T PRK06854 300 EENKAGRGP------IYMDTEEALQDKHLESELWEDFLDMTPGQALLWA-AQNIEPEEENSEIMGTEPYIVGSHSGASGY 372 (608)
T ss_pred HHHhcCCCC------eEEEcccccccchhHHHHHHHHhccCHHHHHHHH-HcCCCcccCceeeeccCCeeecCCCCceEE
Confidence 999988764 999998886 23344443 33333332 25999999999999999999998 7
Q ss_pred ccCCCCceeeec---CCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCC-CCCCCccch
Q 046556 402 PTNHHGEVVTIK---GDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGE-KQKPLENNA 477 (633)
Q Consensus 402 ~vd~~~~vl~~d---~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~-~~~~~~~~~ 477 (633)
.||....+...+ .....|+||||||||||+|++.| ++++++ +++|++||++++++++... .........
T Consensus 373 ~vd~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~---~l~~~s----~~~g~~ag~~~~~~~~~~~~~~~~~~~~~ 445 (608)
T PRK06854 373 WVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPH---KFSSGS----FAEGRIAAKAAVRYILDNKDEKPEIDDDQ 445 (608)
T ss_pred EecCcccccccccccccccccCCCCEEEeeecCCCCcc---hhHHHH----HHHHHHHHHHHHHHHHhCCcCCCCCCHHH
Confidence 888111111100 00123999999999999864443 466665 5578888888888775421 111122111
Q ss_pred hhhHHHH----HHHhhh----------cCCCCChHHHHHHHHHHhhccceEe-----eCHHHHHHHHHHHHHHHHHhccc
Q 046556 478 GERTVAW----LDKIRN----------SNGSIPTSKIRLNMQRVMQNNAAVF-----RTQETLEEGCQLIDKAWESFHDV 538 (633)
Q Consensus 478 ~~~~~~~----~~~~~~----------~~~~~~~~~~~~~l~~~m~~~~~~~-----r~~~~l~~~l~~l~~l~~~~~~~ 538 (633)
.+...+. +..+.. ..+..++.+++.+||++||+|+|++ ||+++|+++|++|++|+++++++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~gi~~~~~~R~~~~L~~al~~l~~l~~~~~~~ 525 (608)
T PRK06854 446 IEELKKEIYAPLERYEEFKDYSTDPDVNPNYISPEQLEERLQKIMDEYAGGISTNYTTNEKLLEIALELLEMLEEDSEKL 525 (608)
T ss_pred HHHHHHHHHhHHhhhhcccccccccccCCCCCCHHHHHHHHHHHHHHhCCCcchhhhhcHHHHHHHHHHHHHHHHHHHhc
Confidence 1111111 111111 1223568899999999999999998 99999999999999999888877
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCc--cccccCCCCCCCcccccceEEEEee--CCeeEEeeeec
Q 046556 539 KLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESR--GAHAREDFTKRDDENWMKHTLGYWE--NEKVRLDYRPV 614 (633)
Q Consensus 539 ~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESR--G~h~R~D~P~~d~~~~~~~~~~~~~--~g~~~~~~~~~ 614 (633)
.+.+ .++|++++|++|||++|+++++|||+||||| |+|||+|||++||++|+||++++++ +|+++++++|+
T Consensus 526 ~~~~-----~~~~~~~~el~~~l~~a~~i~~aAl~R~ESR~~G~H~R~DyP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (608)
T PRK06854 526 AARD-----LHELMRCWELKHRLLVAEAHIRHLLFRKETRWPGYYERADYPGKDDENWKCFVNSRYDPGTGEWTIRKLPY 600 (608)
T ss_pred cCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCcCCCCChhhhcEEEEEEEcCCCCcEEEEEecc
Confidence 6666 3899999999999999999999999999999 9999999999999999999988765 57777777777
Q ss_pred c
Q 046556 615 H 615 (633)
Q Consensus 615 ~ 615 (633)
.
T Consensus 601 ~ 601 (608)
T PRK06854 601 Y 601 (608)
T ss_pred c
Confidence 5
No 35
>PRK08401 L-aspartate oxidase; Provisional
Probab=100.00 E-value=5.6e-76 Score=639.14 Aligned_cols=455 Identities=31% Similarity=0.493 Sum_probs=381.5
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHHHH
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQY 127 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~ 127 (633)
.||||||+|+|||+||+.|++.|++|+||||.. ..+++..++||++.... ..|+++.++.|+++.+.+++|+++++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~-~~~~s~~a~ggi~~~~~--~~ds~e~~~~d~~~~~~~~~d~~~v~~ 78 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI-KKSNSYLAQAGIAFPIL--EGDSIRAHVLDTIRAGKYINDEEVVWN 78 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC-CCCCcHHHcCCcccccC--CCCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 699999999999999999999999999999974 56677778888876543 368889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEEEE
Q 046556 128 MCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFA 207 (633)
Q Consensus 128 ~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v 207 (633)
+++++++.++||+++|++|.... .+++++ .+|.++..+.+|..+...|.+.+++.|++++.. .+
T Consensus 79 ~~~~~~~~i~~L~~~Gv~f~~~~-------~~~g~~--------~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v 142 (466)
T PRK08401 79 VISKSSEAYDFLTSLGLEFEGNE-------LEGGHS--------FPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FA 142 (466)
T ss_pred HHHHHHHHHHHHHHcCCCcccCC-------CcCCcc--------CCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-Ee
Confidence 99999999999999999996531 123333 236666667788999999999999999999875 79
Q ss_pred EEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccccccccc
Q 046556 208 LDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGI 287 (633)
Q Consensus 208 ~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~ 287 (633)
++|+. ++++|+|+.+ +++ .+.|+.|||||||++.+|..+++++.++|||+.+++++||.+.+|||+||||+.+
T Consensus 143 ~~l~~-~~g~v~Gv~~----~g~--~i~a~~VVLATGG~~~~~~~~~~~~~~tGdg~~~a~~aGA~l~~me~~q~~p~~~ 215 (466)
T PRK08401 143 EELAI-KNGKAYGVFL----DGE--LLKFDATVIATGGFSGLFKFTAGSPLNLGTLIGDAVMKGAPARDLEFVQFHPTGF 215 (466)
T ss_pred EEEEe-eCCEEEEEEE----CCE--EEEeCeEEECCCcCcCCCCCcCCCCCCCcHHHHHHHHcCCcccCceeeEEecccc
Confidence 99988 6789999876 344 4899999999999999998888888999999999999999999999999999876
Q ss_pred cCC--cceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCChhHHH
Q 046556 288 YGA--GCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLK 365 (633)
Q Consensus 288 ~~~--~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l~ 365 (633)
... .+++ ++.++++|+++||.+|+||+++ +.+|+++++++..++.+++ .+|+|.++++ .+.
T Consensus 216 ~~~~~~~l~-~e~~r~~g~ilvN~~G~RF~~E-------~~~rd~v~~ai~~~~~~~~-------~v~ld~~~~~--~~~ 278 (466)
T PRK08401 216 IGKRGTYLI-SEAVRGAGAKLVTGDGERFVNE-------LETRDIVARAIYRKMQEGK-------GVFLDATGIE--DFK 278 (466)
T ss_pred cCCCCCeEE-eeecccCceEEECCCCCChhcc-------cccHHHHHHHHHHHHhcCC-------EEEEeCcCHH--HHH
Confidence 543 3455 8889999999999999999974 5678999999998887653 4899998863 466
Q ss_pred HHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhh
Q 046556 366 ERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANS 445 (633)
Q Consensus 366 ~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~ 445 (633)
+.++.+.+.+.. .|+|+.++++||.|..||++|||.||.+++ |+||||||||||+|+|+||+|||+||+
T Consensus 279 ~~~~~~~~~~~~-~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~----------t~IpGLyAaGE~a~~G~hG~nrl~gns 347 (466)
T PRK08401 279 RRFPQIYAFLRK-EGIDPSRDLIPVTPIAHYTIGGISVDTFYR----------TGIKNLYAIGEAASNGFHGANRLASNS 347 (466)
T ss_pred HHhHHHHHHHHH-cCCCcCCcccccccceeecCCCEEECCCCc----------ccCCCEEECccccccCCCCCCcchhHH
Confidence 677776666654 899999999999999999999999999987 999999999999877999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHHHHHHHH
Q 046556 446 LLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGC 525 (633)
Q Consensus 446 l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~~l~~~l 525 (633)
|++|+|||++||++|++.... . ... . ..... . ..+..+ .+||++||+++|++|++++|++++
T Consensus 348 l~~~~v~G~~ag~~aa~~~~~---~---~~~--~--~~~~~---~----~~~~~~-~~l~~~m~~~~gi~r~~~~l~~~~ 409 (466)
T PRK08401 348 LLECIVSGLEVARTISRERPK---L---REV--K--EPPYH---G----YELGDV-DSIREILWNHAGIVRSEESLREGL 409 (466)
T ss_pred HHHHHHHHHHHHHHHhhhCcC---c---ccc--c--hhhhh---c----cccccH-HHHHHHHhccceEEECHHHHHHHH
Confidence 999999999999999864211 0 000 0 00000 0 112233 569999999999999999999999
Q ss_pred HHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccccccCCCCCCCcccccceE
Q 046556 526 QLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHT 598 (633)
Q Consensus 526 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~h~R~D~P~~d~~~~~~~~ 598 (633)
.+|++|+++ .+|+++|++|++|||+||||||+|||+|||++|+ +|.++.
T Consensus 410 ~~~~~l~~~-----------------------~~~~~~a~~~~~~al~R~esrG~h~r~D~p~~~~-~~~~~~ 458 (466)
T PRK08401 410 KKLEGIEAD-----------------------PRLKLLAKGVLECALAREESRGAHYREDFPFMRK-EFERPS 458 (466)
T ss_pred HHHHHHHhc-----------------------cCHHHHHHHHHHHHHhcCCCccceecCCCCccCh-hhhccc
Confidence 999988632 1457799999999999999999999999999876 798876
No 36
>PRK06175 L-aspartate oxidase; Provisional
Probab=100.00 E-value=9e-62 Score=522.05 Aligned_cols=423 Identities=31% Similarity=0.498 Sum_probs=346.1
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
.++||||||+|.|||+||+.|+ .|++|+||||....++++..++||++... ..++++.++.|+++.+.+.++++++
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s~~a~ggi~~~~---~~d~~~~~~~d~~~~g~~~~d~~lv 78 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNTYLAQGGISVAR---NKDDITSFVEDTLKAGQYENNLEAV 78 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCchHHHhHhheeCC---CCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 5799999999999999999985 69999999999888888888888887543 3578899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHh-CCCEEEEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMK-HNTQFFVE 204 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~-~gv~i~~~ 204 (633)
+.+++++++.++||+++|++|....+. .....++++ +..|.++..+.+|..++..|.+++++ .||+|+++
T Consensus 79 ~~~~~~s~e~i~wL~~~Gv~f~~~~~~-~~~~~~g~~--------~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~ 149 (433)
T PRK06175 79 KILANESIENINKLIDMGLNFDKDEKE-LSYTKEGAH--------SVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIEN 149 (433)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCc-eeeeccCcc--------ccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEEC
Confidence 999999999999999999999865432 222223333 33477777788899999999988875 59999999
Q ss_pred EEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccccccc
Q 046556 205 YFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHP 284 (633)
Q Consensus 205 ~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p 284 (633)
+.+++|+. ++++|+||++.+ +++.+.+.|+.|||||||++++|..+++.+.++|||+.||+++|+.+.+|+|+|+||
T Consensus 150 t~v~~Li~-~~~~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~~~l~~~~~~~~~~tGdg~~ma~~~Ga~l~~m~~~q~~p 226 (433)
T PRK06175 150 CYLVDIIE-NDNTCIGAICLK--DNKQINIYSKVTILATGGIGGLFKNSTNQRIITGDGIAIAIRNNIKIKDLDYIQIHP 226 (433)
T ss_pred cEeeeeEe-cCCEEEEEEEEE--CCcEEEEEcCeEEEccCcccccCcCcCCCCCcchHHHHHHHHcCCCCcCCceEEEec
Confidence 99999998 578999988754 455567899999999999999988888888999999999999999999999999999
Q ss_pred ccccCC-----cceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCC
Q 046556 285 TGIYGA-----GCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHL 359 (633)
Q Consensus 285 ~~~~~~-----~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~ 359 (633)
+.+++. .+++ ++.++++++++||.+|+||++| +.+|+++++++..++.++.. ..+|+|.+.+
T Consensus 227 ~~~~~~~~~~~~~l~-~~~~~~~g~ilVN~~G~RF~~E-------~~~~~~~~~ai~~~~~~~~~-----~~v~~D~~~~ 293 (433)
T PRK06175 227 TAFYEETIEGKKFLI-SESVRGEGGKLLNSKGERFVDE-------LLPRDVVTKAILEEMKKTGS-----NYVYLDITFL 293 (433)
T ss_pred eEeccCCCCCcceEe-ehhhcCCceEEECCCCCChhhc-------cccHHHHHHHHHHHHHhcCC-----CeEEEecccC
Confidence 876532 2344 7778889999999999999985 45789999999888765432 2589999999
Q ss_pred ChhHHHHHhHHHHHHHHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCC
Q 046556 360 PPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGAN 439 (633)
Q Consensus 360 ~~~~l~~~~~~~~~~~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~ 439 (633)
+.+.+.+++|.....+.. .|+|+.++++||.|..||++|||+||.++| |+|||||||||++|+|+||+|
T Consensus 294 ~~~~~~~~~~~~yn~~~~-~G~D~~~~~i~v~p~~h~t~GGi~vd~~~~----------t~i~gLYAaGE~a~~g~hG~n 362 (433)
T PRK06175 294 DKDFLKNRFPTIYEECLK-RGIDITKDAIPVSPAQHYFMGGIKVDLNSK----------TSMKNLYAFGEVSCTGVHGAN 362 (433)
T ss_pred cHHHHHHHHHHHHHHHHH-hCcCCCCCcEEEEcceeeecCCEEECCCcc----------ccCCCeEecccccccCCCccc
Confidence 999899899775555543 799999999999999999999999999887 999999999999877999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchhhhHHHHHHHhhhcCCCCChHHHHHHHHHHhhccceEeeCHH
Q 046556 440 RLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQE 519 (633)
Q Consensus 440 rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~~~~~r~~~ 519 (633)
|++||+|++|+|||++||++|+....... ....+ .. . .......+.+.++++++.. +.|+.+
T Consensus 363 rl~gnsl~~~lvfGr~Ag~~a~~~~~~~~-~~~~~--~~-----------~--~~~~~~~~~~~~~~~~~~~--~~~~~~ 424 (433)
T PRK06175 363 RLASNSLLEGLVFSKRGAEKINSEIDNIK-LNITK--VY-----------T--LKHDVEYYSLLNKKIIIKE--IEKLRG 424 (433)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhccc-ccccc--cc-----------c--cccchhHHHHHHHHHHHHH--HHhhHH
Confidence 99999999999999999999987553211 10000 00 0 0122344556667777766 788888
Q ss_pred HHHHHHH
Q 046556 520 TLEEGCQ 526 (633)
Q Consensus 520 ~l~~~l~ 526 (633)
.|+.++.
T Consensus 425 ~~~~~~~ 431 (433)
T PRK06175 425 DLKDELV 431 (433)
T ss_pred HHHHHhh
Confidence 7777653
No 37
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=100.00 E-value=2.8e-51 Score=449.74 Aligned_cols=395 Identities=29% Similarity=0.457 Sum_probs=304.3
Q ss_pred CCcccccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCC-----CCcCCHHHHHHHHH
Q 046556 39 GGYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN-----MTEDDWRWHMYDTV 113 (633)
Q Consensus 39 ~~~~~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~-----~~~d~~~~~~~d~~ 113 (633)
..+..++.++||||||+|+||++||+.|+++|++|+||||....+|++..+.|+++..... ...++.+.++.+++
T Consensus 53 ~~~~~~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~ 132 (506)
T PRK06481 53 TDPSELKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETL 132 (506)
T ss_pred CCCccccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHH
Confidence 3444567799999999999999999999999999999999988777787777777653321 12466778888999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEcc--CCchHHHHHHHH
Q 046556 114 KGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAA--DRTGHALLHTLY 191 (633)
Q Consensus 114 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~--~~~g~~l~~~l~ 191 (633)
+.+.+..++++++.+++++.+.++||+++|++|.... ..++.+. .|.+... ...|..++..|.
T Consensus 133 ~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~-------~~~g~~~--------~r~~~p~~g~~~g~~l~~~L~ 197 (506)
T PRK06481 133 KGGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDNLT-------ITGGMSE--------KRTHRPHDGSAVGGYLVDGLL 197 (506)
T ss_pred HhcCCCCCHHHHHHHHhccHHHHHHHHHcCceEeecc-------cCCCCCC--------CceeccCCCCCChHHHHHHHH
Confidence 8888999999999999999999999999999986421 1122111 1222221 124567889999
Q ss_pred HHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC------C------CCCCCCCCC
Q 046556 192 GQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA------Y------FSATSAHTC 259 (633)
Q Consensus 192 ~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~------~------~~~~~~~~~ 259 (633)
+.+++.|+++++++.|++|+. ++++|+||.+.. .+++...|.|+.||+|||||+.+ | ..+++++++
T Consensus 198 ~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~-~~g~~~~i~a~~VVlAtGG~~~n~~m~~~~~p~~~~~~~~~~~g~ 275 (506)
T PRK06481 198 KNVQERKIPLFVNADVTKITE-KDGKVTGVKVKI-NGKETKTISSKAVVVTTGGFGANKDMIAKYRPDLKGYVTTNQEGS 275 (506)
T ss_pred HHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEe-CCCeEEEEecCeEEEeCCCcccCHHHHHHhCccccCCccCCCCCC
Confidence 999999999999999999988 678999998864 45566679999999999999864 2 123456789
Q ss_pred chHHHHHHHHcCCCccCccccccccccccCCcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHH
Q 046556 260 TGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEI 339 (633)
Q Consensus 260 tGdg~~~a~~aGa~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~ 339 (633)
||||+.||+++||.+.+|+++|+||+.....+.++ .+..++.++++||.+|+||++|+.+ ++.+++.+..+.
T Consensus 276 tGdGi~ma~~aGA~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~i~Vn~~G~RF~nE~~~-------~~~~~~~~~~~~ 347 (506)
T PRK06481 276 TGDGIKMIEKLGGTTVDMDQIQIHPTVQQSKSYLI-GEAVRGEGAILVNQKGKRFGNELDT-------RDKVSAAINKLP 347 (506)
T ss_pred ChHHHHHHHHcCCCccCchhhhhCCCccCCCccee-hhhccCCceEEECCCCCCCCCCCcc-------HHHHHHHHHhCc
Confidence 99999999999999999999999997655444444 5666778899999999999997644 333333322110
Q ss_pred -------------------H--hcCCCCCCCCeE--EEecCCCChhHHHHHhHHHHHHHHHHcCCCC------------C
Q 046556 340 -------------------R--EGRGVGPLKDHI--YLHLNHLPPDVLKERLPGISETAAIFAGVDV------------T 384 (633)
Q Consensus 340 -------------------~--~g~g~~~~~~~v--~~d~~~~~~~~l~~~~~~~~~~~~~~~G~d~------------~ 384 (633)
. ...|.....+.+ +.+..+++++.|++++.+||+.|. .|.|+ .
T Consensus 348 ~~~~~~i~D~~~~~~~~~~~~~~~~g~~~kadTleeLA~~~gid~~~L~~tv~~yN~~~~--~g~D~~fgr~~~~~~~i~ 425 (506)
T PRK06481 348 EKYAYVVFDSGVKDRVKAIAQYEEKGFVEEGKTIDELAKKINVPAETLTKTLDTWNKAVK--NKKDEAFGRTTGMDNDLS 425 (506)
T ss_pred CCcEEEEECHHHHhhhhhhHHHHhCCcEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh--cCCCcccCCCCCCCCCCc
Confidence 0 001110000000 011245788999999999999886 45442 2
Q ss_pred CCC---eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHH
Q 046556 385 KEP---IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVA 461 (633)
Q Consensus 385 ~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa 461 (633)
+.| +++.|..|+|+||++||+++|||+. ++++|||||||||++ +++||.||++|+++++|++|||+||++|+
T Consensus 426 ~~PfYai~~~p~~~~T~GGl~in~~~qVld~----~g~pI~GLYAaGe~~-gg~~g~~~~~G~~l~~~~~~GriAg~~aa 500 (506)
T PRK06481 426 TGPYYAIKIAPGIHYTMGGVKINTNTEVLKK----DGSPITGLYAAGEVT-GGLHGENRIGGNSVADIIIFGRQAGTQSA 500 (506)
T ss_pred CCCEEEEEEecceeecccCeEECCCceEEcC----CCCEeCCeeeceecc-ccCCCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 455 7889999999999999999999987 459999999999998 69999999999999999999999999999
Q ss_pred HHhC
Q 046556 462 EIQR 465 (633)
Q Consensus 462 ~~~~ 465 (633)
++++
T Consensus 501 ~~~~ 504 (506)
T PRK06481 501 EFAK 504 (506)
T ss_pred Hhhh
Confidence 8764
No 38
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=100.00 E-value=2.4e-47 Score=414.26 Aligned_cols=379 Identities=34% Similarity=0.499 Sum_probs=288.2
Q ss_pred cEEEECCchHHHHHHHHHHhCC-CcEEEEeecCCCCCcccccccceeeecCCC-----CcCCHHHHHHHHHhcCCCCCCH
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHG-FNTACITKLFPTRSHTVAAQGGINAALGNM-----TEDDWRWHMYDTVKGSDWLGDQ 122 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G-~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~-----~~d~~~~~~~d~~~~~~~~~~~ 122 (633)
||||||+|+||++||++|+++| ++|+||||....+|.+..+.|+++...... ..++.+.++.++++.+.+..++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 999999999877777777777776543221 2467788888888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccC--CchHHHHHHHHHHHHhCCCE
Q 046556 123 DAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAAD--RTGHALLHTLYGQAMKHNTQ 200 (633)
Q Consensus 123 ~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~--~~g~~l~~~l~~~a~~~gv~ 200 (633)
++++.+++.+++.++||+ +++.|..... ...+++.. ++.++..+ ..+..+...|.+.+++.|++
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~-----~~~~~~~~--------~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~ 146 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDL-----IQLGGHSV--------PRAHRPTGGAGSGAEIVQKLYKKAKKEGID 146 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccc-----cccCCcCC--------CccccCCCCCCCHHHHHHHHHHHHHHcCCE
Confidence 999999999999999999 6776643210 01122111 12222222 35678899999999999999
Q ss_pred EEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC------CCC------CCCCCCCCchHHHHHHH
Q 046556 201 FFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR------AYF------SATSAHTCTGDGNAMVS 268 (633)
Q Consensus 201 i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~------~~~------~~~~~~~~tGdg~~~a~ 268 (633)
++++++|++|+.+++++|+||++.+ .+++...+.+|.||+|||+++. .|. .+.+++.++|||+.||+
T Consensus 147 i~~~~~v~~l~~~~~g~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~~~n~~m~~~~~p~~~~~~~~~~~~~tGdG~~ma~ 225 (439)
T TIGR01813 147 TRLNSKVEDLIQDDQGTVVGVVVKG-KGKGIYIKAAKAVVLATGGFGSNKEMIAKYDPTLKGLGSTNQPGATGDGLLMAE 225 (439)
T ss_pred EEeCCEeeEeEECCCCcEEEEEEEe-CCCeEEEEecceEEEecCCCCCCHHHHHHhCCCcCCCCcCCCCCCchHHHHHHH
Confidence 9999999999985568999998875 4666667899999999999997 342 23456789999999999
Q ss_pred HcCCCccCccccccccccccCC-cceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCC--
Q 046556 269 RAGLPLEDLEFVQFHPTGIYGA-GCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGV-- 345 (633)
Q Consensus 269 ~aGa~l~~~e~~~~~p~~~~~~-~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~-- 345 (633)
++||.+.+|+++++||....+. +.+. ....+..++++||.+|+||++|..+ ++.+.+.+..+.... ..
T Consensus 226 ~aGa~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~vn~~G~RF~~E~~~-------~~~~~~~~~~~~~~~-~~~i 296 (439)
T TIGR01813 226 KIGAALVDMDYIQAHPTASPDEGGFLI-SEAVRGYGAILVNKTGERFMNELAT-------RDTVSDAILAQPGKS-AYLI 296 (439)
T ss_pred HcCCCccCCchhheecccccCCcceee-hhhcccCcEEEECCCCCCccccCCc-------HHHHHHHHHhCCCCc-eEEE
Confidence 9999999999999998765443 3333 4556667789999999999987543 333333332211000 00
Q ss_pred --------------CCCCCeEE-E-------ecCCCChhHHHHHhHHHHHHHHHHcCCCCC------------CCC---e
Q 046556 346 --------------GPLKDHIY-L-------HLNHLPPDVLKERLPGISETAAIFAGVDVT------------KEP---I 388 (633)
Q Consensus 346 --------------~~~~~~v~-~-------d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~------------~~~---i 388 (633)
....+.++ . ...+++++.|++++.+||+.|. .|.|+. +.| +
T Consensus 297 ~d~~~~~~~~~~~~~~~~g~~~~adtleeLa~~~g~~~~~l~~tv~~yN~~~~--~g~D~~f~r~~~~~~~i~~~Pfya~ 374 (439)
T TIGR01813 297 FDDDVYKKAEMVDNYYRLGVAYKGDSLEELAKQFGIPAAALKKTVKDYNEYVA--SGKDTPFGRPMDMPDDLSKSPYYAI 374 (439)
T ss_pred ECHHHHHhhhhHHHHHhcCcEEEeCCHHHHHHHhCCCHHHHHHHHHHHHHHHh--cCCCcccCCCCCCCCCCCCCCEEEE
Confidence 00000111 1 1235788889999999999886 566542 456 7
Q ss_pred eccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHH
Q 046556 389 PVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACAN 458 (633)
Q Consensus 389 ~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~ 458 (633)
++.|..|+|+||++||+++||++. +.++|||||||||++ +++||.+|++|+++++|++||++||+
T Consensus 375 ~~~~~~~~t~GGl~~d~~~~vl~~----~g~~IpGLyAaG~~~-gg~~g~~~~~G~~~~~~~~~GriAg~ 439 (439)
T TIGR01813 375 KVTPGVHHTMGGVKINTKAEVLDA----QGKPIPGLFAAGEVT-GGVHGANRLGGNAIADCIVFGRIAGE 439 (439)
T ss_pred EEEcCccccccCeEECCCCeEECC----CCCEecccEEeeecc-cccCCCCCCchhhhhhhhhhhHhhcC
Confidence 899999999999999999999986 458999999999998 69999999999999999999999984
No 39
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=100.00 E-value=3.9e-47 Score=410.45 Aligned_cols=372 Identities=38% Similarity=0.570 Sum_probs=286.1
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCC-----CcCCHHHHHHHHHhcCCCCCCHH
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM-----TEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~-----~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
||||||+|+|||+||++|+++|++|+||||....+|++..+.|++....... ..++++.++.+++....+..+++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDPD 80 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-HH
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeecccccccccc
Confidence 8999999999999999999999999999999877777777766666544222 13668889999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEE-ccCC------chHHHHHHHHHHHHh
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCAC-AADR------TGHALLHTLYGQAMK 196 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~-~~~~------~g~~l~~~l~~~a~~ 196 (633)
+++.+++++++.++||+++|++|....++.+....++++... ++.+. ..+. .+..++..|.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~-------~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 153 (417)
T PF00890_consen 81 LVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPR-------WRSPPGNPDPPFGGLGGGKALIEALAKAAEE 153 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESST-------EEEEESSTTSSSHCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccceehhhhhhcccccccccccccccccCCcccc-------ceeeeccccccccccccHHHHHHHHHHHHhh
Confidence 999999999999999999999999866665554444444321 13333 2333 688999999999999
Q ss_pred CCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC----------CCCCCCCCCCCchHHHHH
Q 046556 197 HNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR----------AYFSATSAHTCTGDGNAM 266 (633)
Q Consensus 197 ~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~----------~~~~~~~~~~~tGdg~~~ 266 (633)
+|++|+.++++++|++ ++++|+||++.+..+|+.+.|+|++|||||||+++ .+....+++.++|||+.|
T Consensus 154 ~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~~~~~~~~~~~~~~~~~~~~Gdg~~m 232 (417)
T PF00890_consen 154 AGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELLRQYYPPGPYAMTTGPPGNTGDGIAM 232 (417)
T ss_dssp TTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHHHHH-GGGGSSSBSSGTTTSSHHHHH
T ss_pred cCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCccccccccccccccccccccCCCCcccCchhh
Confidence 9999999999999999 68899999998777899999999999999999997 444556677999999999
Q ss_pred HHHcCCCccC--ccccccccccccC----CcceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHH-HHH
Q 046556 267 VSRAGLPLED--LEFVQFHPTGIYG----AGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMT-MEI 339 (633)
Q Consensus 267 a~~aGa~l~~--~e~~~~~p~~~~~----~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~-~e~ 339 (633)
|+++|+.+.+ |++.+++|..+.+ .+.++ .......++++||.+|+||+++.. +++.+...+. .++
T Consensus 233 a~~aGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~vn~~G~Rf~~e~~-------~~~~~~~~~~~~~~ 304 (417)
T PF00890_consen 233 ALRAGAALSNDPMEFIQWGPPSVPGIRDPSGILI-TEALPGPGGIWVNADGERFMNEDA-------SYDDVAQAILQREI 304 (417)
T ss_dssp HHHTTCCEESTTTTCEEEEEEEETSTCCTTTSBH-HTHHHHTT-EEEETTSSBTHGGGS--------HHHHHHHHH-HHH
T ss_pred hhccCccccCccchhhccCCcccccccccccchh-hhhhccceeEEEcCCCcCcccccc-------cccHHHHHHHHHhh
Confidence 9999999999 9999999887653 22222 344555688999999999997543 4566776766 344
Q ss_pred HhcCCCCCCCCeEEEecCC-CChhHHHHHhHHHHHHHHHHcCCC--------CCCCCe-------eccccccccccCccc
Q 046556 340 REGRGVGPLKDHIYLHLNH-LPPDVLKERLPGISETAAIFAGVD--------VTKEPI-------PVLPTVHYNMGGIPT 403 (633)
Q Consensus 340 ~~g~g~~~~~~~v~~d~~~-~~~~~l~~~~~~~~~~~~~~~G~d--------~~~~~i-------~v~p~~~~~~GGi~v 403 (633)
....+ ...+|+++.+ ++++.|.++++.|+..+.. |.| |.+.+. ++.|..|+|+|||+|
T Consensus 305 ~~~~~----~~~~~~~~~~g~~~~~L~~tv~~yn~~~~~--g~d~~f~~~~~~~~~~~~~pfya~~~~~~~~~t~GGl~v 378 (417)
T PF00890_consen 305 REPRG----DAYVYLIFDGGIDPEGLAATVERYNEECEA--GVDEDFGRGIDPLKRPIPGPFYAVEVTPGIHYTMGGLKV 378 (417)
T ss_dssp HTTTS----ECBEEEEETTTSHHHHHHHHCHHHHHHHHH--TSTTTTS-STTTTTSEEESSEEEEEEEEEEEEES-EEEB
T ss_pred hcccC----CcceEEeeccccChhhhhhhhhHHHHhhhc--ccccccccccccccCcccccccccccccccceeeEEeee
Confidence 44433 1247999988 9999999999999998873 444 334433 488999999999999
Q ss_pred CCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhH
Q 046556 404 NHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSL 446 (633)
Q Consensus 404 d~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l 446 (633)
|+++||++. ++++|||||||||++|+++||+++++|++|
T Consensus 379 d~~~~vl~~----~g~pIpGLyAaGe~~gg~~~g~~~~gG~~l 417 (417)
T PF00890_consen 379 DEDAQVLDA----DGQPIPGLYAAGEAAGGGVHGAYRGGGNGL 417 (417)
T ss_dssp ETTSEEETT----TCEEEEEEEE-SCCEEESSSTTS--TTHHH
T ss_pred CcCcCccCC----CCCEeCCEEEEEcccccccCCccCCcccCC
Confidence 999999985 569999999999998779999999999986
No 40
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=100.00 E-value=2.2e-48 Score=373.14 Aligned_cols=374 Identities=30% Similarity=0.457 Sum_probs=290.4
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCC-----CcCCHHHHHHHHHhcCCCCCCHH
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM-----TEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~-----~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
.|+|||+|.|||+|+..+...|-.|+|+||....+|++..+..||+...... ..|+++.+..|++.....-..|+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~e 90 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVPE 90 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcHH
Confidence 4999999999999999999998889999999999999999999999876542 35889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCcccccCCCcccccccCCcccccCCCCccceeEEc--cCCchHHHHHHHHHHHHhC---
Q 046556 124 AIQYMCREAPKAVIELEN-YGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACA--ADRTGHALLHTLYGQAMKH--- 197 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~-~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~--~~~~g~~l~~~l~~~a~~~--- 197 (633)
++..++.+++.+++||.. .++.... ....+||+. +|++.. ..+.|..++..|..+.++.
T Consensus 91 Lm~~La~~S~~AvewL~~ef~lkld~-------la~lgGHSv--------pRTHr~s~plppgfei~~~L~~~l~k~as~ 155 (477)
T KOG2404|consen 91 LMEKLAANSASAVEWLRGEFDLKLDL-------LAQLGGHSV--------PRTHRSSGPLPPGFEIVKALSTRLKKKASE 155 (477)
T ss_pred HHHHHHhcCHHHHHHHhhhcccchHH-------HHHhcCCCC--------CcccccCCCCCCchHHHHHHHHHHHHhhhc
Confidence 999999999999999975 7776542 123455554 355432 2345677777777666542
Q ss_pred ---CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC-------C------CCCCCCCCCch
Q 046556 198 ---NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA-------Y------FSATSAHTCTG 261 (633)
Q Consensus 198 ---gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~-------~------~~~~~~~~~tG 261 (633)
-++|..+++|++|+. ++|+|.||+..| .+|+...+.++.||+|||||+-. | +++++.+.+||
T Consensus 156 ~pe~~ki~~nskvv~il~-n~gkVsgVeymd-~sgek~~~~~~~VVlatGGf~ysd~~lLKey~pel~~lpTTNG~~~tG 233 (477)
T KOG2404|consen 156 NPELVKILLNSKVVDILR-NNGKVSGVEYMD-ASGEKSKIIGDAVVLATGGFGYSDKELLKEYGPELFGLPTTNGAQTTG 233 (477)
T ss_pred ChHHHhhhhcceeeeeec-CCCeEEEEEEEc-CCCCccceecCceEEecCCcCcChHHHHHHhChhhccCCcCCCCcccC
Confidence 378999999999997 789999999998 57877788999999999999841 1 35778889999
Q ss_pred HHHHHHHHcCCCccCccccccccccccCCc-------ceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHH
Q 046556 262 DGNAMVSRAGLPLEDLEFVQFHPTGIYGAG-------CLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRS 334 (633)
Q Consensus 262 dg~~~a~~aGa~l~~~e~~~~~p~~~~~~~-------~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~ 334 (633)
||.+|....|+.+++|+.+|.||+++..+. ++. .|+.||.|++++|..|.||.++ |..||.+...
T Consensus 234 Dgqk~l~klga~liDmd~vqvhptgfidpndr~~~wKfLA-AEalRG~GaiLl~s~GrRF~nE-------Lg~RDyvTge 305 (477)
T KOG2404|consen 234 DGQKMLMKLGASLIDMDQVQVHPTGFIDPNDRTALWKFLA-AEALRGLGAILLNSTGRRFGNE-------LGTRDYVTGE 305 (477)
T ss_pred cHHHHHHHhCccccccceeEecccCccCCCCchhHHHHHH-HHHhccCceEEEeccchhhhcc-------cccchhhhHh
Confidence 999999999999999999999999875543 344 7899999999999999999984 4456655544
Q ss_pred HHHHHHhcCCCCCCCCeEEEec--------------------------------CCCChhHHHHHhHHHHHHHHHHcCC-
Q 046556 335 MTMEIREGRGVGPLKDHIYLHL--------------------------------NHLPPDVLKERLPGISETAAIFAGV- 381 (633)
Q Consensus 335 i~~e~~~g~g~~~~~~~v~~d~--------------------------------~~~~~~~l~~~~~~~~~~~~~~~G~- 381 (633)
|.+- . -+ ...+.+++-+ -++....|...+..|+... .|.
T Consensus 306 i~kl-~---~P-~ednrallVmnea~~e~~~n~inFY~~K~l~kK~~~~el~s~ln~t~sel~ttl~eY~~~~---~g~~ 377 (477)
T KOG2404|consen 306 IQKL-K---CP-IEDNRALLVMNEANYEAFGNNINFYMFKKLFKKYESAELASALNITESELKTTLEEYSKSF---TGKS 377 (477)
T ss_pred HHhh-c---CC-cccceeEEEecHhHHHHHhhhhhhHhHHHHHHHhhHHHHHHHhCCCHHHHHHHHHHHHHhh---cCCC
Confidence 4320 0 00 0001122211 1233444555555555432 332
Q ss_pred -CCCC------------CC---eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhh
Q 046556 382 -DVTK------------EP---IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANS 445 (633)
Q Consensus 382 -d~~~------------~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~ 445 (633)
||.. ++ -+|.|..||||||++||+..||++. .+..|.|||||||++ ||+||+|||||+|
T Consensus 378 ~D~fgrk~f~~s~is~t~~v~vgeVvPvvHyTMGGvkid~ksrVi~~----ng~vi~GlfAAGEvs-GGvHGaNRLgGsS 452 (477)
T KOG2404|consen 378 EDPFGRKVFPVSDISPTETVYVGEVVPVVHYTMGGVKIDEKSRVIDK----NGKVIVGLFAAGEVS-GGVHGANRLGGSS 452 (477)
T ss_pred CCcCCCccccCCCCCccceeEEEEEeeeEEEeccceEechhhhhhcc----CCcEeeeeeEcceec-cccccccccCccc
Confidence 3321 11 2678999999999999999999986 348899999999998 7999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 046556 446 LLDIVVFGRACANRV 460 (633)
Q Consensus 446 l~~a~~~G~~Ag~~a 460 (633)
|.+|+||||+||+.|
T Consensus 453 LLeCVVFGr~Ag~~A 467 (477)
T KOG2404|consen 453 LLECVVFGRTAGKAA 467 (477)
T ss_pred ceeeeeecccchhhH
Confidence 999999999998744
No 41
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=100.00 E-value=7.6e-47 Score=447.83 Aligned_cols=398 Identities=29% Similarity=0.398 Sum_probs=298.8
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCC-----CcCCHHHHHHHHHhcC-CC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM-----TEDDWRWHMYDTVKGS-DW 118 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~-----~~d~~~~~~~d~~~~~-~~ 118 (633)
+.++||||||+|.||++||++|++.|++|+||||....+|++..+.|+++...... ..|+.+.+..++...+ .+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~~ 486 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKGG 486 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccCC
Confidence 45799999999999999999999999999999998877777777777776643321 2466777777876654 57
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccC-------CchHHHHHHHH
Q 046556 119 LGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAAD-------RTGHALLHTLY 191 (633)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~-------~~g~~l~~~l~ 191 (633)
..|+++++.+++++++.++||+++|++|.... .+++++. .|.++..+ ..|..++..|.
T Consensus 487 ~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~-------~~gg~~~--------~r~~~~~~~~~g~~~~~G~~i~~~l~ 551 (1167)
T PTZ00306 487 HCDPGLVKTLSVKSADAISWLSSLGVPLTVLS-------QLGGASR--------KRCHRAPDKKDGTPVPIGFTIMRTLE 551 (1167)
T ss_pred CCCHHHHHHHHHhhHHHHHHHHHcCCCceeee-------ccCCCCC--------CceeecCcccCCCcCCcHHHHHHHHH
Confidence 89999999999999999999999999996421 1233222 13322211 12567778887
Q ss_pred HHHHh---CCCEEEEEEEEEEEEEccC--------CcEEEEEEEEc--CCCeEEEEEcCeEEEccCCcCCCCC-------
Q 046556 192 GQAMK---HNTQFFVEYFALDLIMNSD--------GTCQGVIALNM--EDGTLHRFRAASTILATGGYGRAYF------- 251 (633)
Q Consensus 192 ~~a~~---~gv~i~~~~~v~~L~~d~~--------g~v~Gv~~~~~--~~G~~~~i~A~~VVlAtGg~~~~~~------- 251 (633)
+.+++ .|++|++++++++|+.|++ ++|+||++.+. .+|+.+.|.||+||||||||+++..
T Consensus 552 ~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~N~e~~~m~~~ 631 (1167)
T PTZ00306 552 DHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSNDHTPNSLLRE 631 (1167)
T ss_pred HHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCcccCccHHHHHHH
Confidence 77765 4999999999999998531 38999999763 2788888999999999999997531
Q ss_pred --------CCCCCCCCchHHHHHHHHcCCCccCccccccccccccCC-------cceeeeccccCCCcEEECCCCCcccc
Q 046556 252 --------SATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGA-------GCLLLKVGSRGEGGILRNSEGERFME 316 (633)
Q Consensus 252 --------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~~~~-------~~~~~~~~~~g~g~~~vn~~G~rf~~ 316 (633)
.+++.+.+||||+.||+++||.+.+|+++|+||+++..+ ..+. .+..++.++++||.+|+||++
T Consensus 632 y~p~~~~~~~~~~~~~tGDGi~mA~~aGA~l~~m~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~g~ilVN~~GkRF~n 710 (1167)
T PTZ00306 632 YAPQLSGFPTTNGPWATGDGVKLARKLGATLVDMDKVQLHPTGLIDPKDPSNRTKYLG-PEALRGSGGVLLNKNGERFVN 710 (1167)
T ss_pred hCccccCCCCCCCCCcccHHHHHHHHcCCcCcCccceeEcceeecCCCCCCCccccee-eehhcCCceEEECCCCCCccc
Confidence 234567899999999999999999999999999754321 1222 445566789999999999998
Q ss_pred ccCCccccccchhHHhHHHHHHHHhcCC-----C---------------C------CCCCeEE-Ee-------cCCCChh
Q 046556 317 RYAPTAKDLASRDVVSRSMTMEIREGRG-----V---------------G------PLKDHIY-LH-------LNHLPPD 362 (633)
Q Consensus 317 ~~~~~~~~l~~r~~~~~~i~~e~~~g~g-----~---------------~------~~~~~v~-~d-------~~~~~~~ 362 (633)
|+. +++.+++++..+.....+ + . ...+.++ .| ..+++++
T Consensus 711 E~~-------~~~~~~~ai~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~g~~~kADTleELA~~~gid~~ 783 (1167)
T PTZ00306 711 ELD-------LRSVVSQAIIAQGNEYPGSGGSKFAYCVLNEAAAKLFGKNSLGFYWKRLGLFQRVDDVKGLAKLIGCPVE 783 (1167)
T ss_pred ccC-------cHHHHHHHHHhhcccccccccCceEEEEEchHHHhhhhhhhhhhhhhhcCeEEEeCCHHHHHHHhCCCHH
Confidence 643 344555554433211000 0 0 0001111 11 2357888
Q ss_pred HHHHHhHHHHHHHHHHcCCCC-------------CCCC---eeccccccccccCcccCCCCceeeecC----CCCCCccc
Q 046556 363 VLKERLPGISETAAIFAGVDV-------------TKEP---IPVLPTVHYNMGGIPTNHHGEVVTIKG----DDPDEVVP 422 (633)
Q Consensus 363 ~l~~~~~~~~~~~~~~~G~d~-------------~~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~----~~~~T~ip 422 (633)
.|++++.+||+.|. .|.|. .+.| +++.|..|+|+||+.||.++|||+.|. +.++++||
T Consensus 784 ~L~aTV~rYN~~~~--~G~d~~f~~~~~~p~~~~~~~PfYA~~~~p~~~~T~GGl~in~~~qVLd~dg~~~~~~~~~pIp 861 (1167)
T PTZ00306 784 NLHRTLETYERLST--KKVACPLTGKVVFPCVVGTQGPYYVAFVTPSIHYTMGGCLISPSAEMQMEDNSVNIFEDRRPIL 861 (1167)
T ss_pred HHHHHHHHHHHHHh--cCCCCccCCCccCCCcCCCCCCEEEEEEecccccccCCeEECCCceEEeccCccccccCCceeC
Confidence 99999999999986 56553 2334 478899999999999999999998642 11347999
Q ss_pred CeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 046556 423 GLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPGE 468 (633)
Q Consensus 423 GLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~~ 468 (633)
|||||||++ +++||.+|++|+++++|++||++||++|+++++...
T Consensus 862 GLYAAGe~~-gg~~g~~y~gG~sl~~a~~fGriAG~~aa~~~~~~~ 906 (1167)
T PTZ00306 862 GLFGAGEVT-GGVHGGNRLGGNSLLECVVFGKIAGDRAATILQKKK 906 (1167)
T ss_pred ceEecceec-cccccCCCCchhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999998 689999999999999999999999999999987643
No 42
>PRK07121 hypothetical protein; Validated
Probab=100.00 E-value=1.4e-45 Score=404.89 Aligned_cols=395 Identities=25% Similarity=0.288 Sum_probs=280.8
Q ss_pred cccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeec-CC------CCcCCHHHHHHHHHhc
Q 046556 43 IVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAAL-GN------MTEDDWRWHMYDTVKG 115 (633)
Q Consensus 43 ~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~-~~------~~~d~~~~~~~d~~~~ 115 (633)
.++.++||||||+|+|||+||++|+++|++|+||||....+|++..+ ||+.... +. ...++.+.++.++.+.
T Consensus 16 ~~~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~~s-gG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~ 94 (492)
T PRK07121 16 SWDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATALS-GGVIYLGGGTAVQKAAGFEDSPENMYAYLRVA 94 (492)
T ss_pred ccCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccccc-CeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999999999999987766666555 4433221 11 1246777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCcccccCCCccccc-------ccCCcc--cccCC-CCccceeEEcc---CC-
Q 046556 116 SDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQR-------AFGGQS--LDFGK-GGQAYRCACAA---DR- 181 (633)
Q Consensus 116 ~~~~~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~-------~~gg~~--~~~~~-g~~~~r~~~~~---~~- 181 (633)
+.+..++++++.+++++++.++||+++|++|.....+..... .+.+.. ..+.. ....++..... ..
T Consensus 95 ~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (492)
T PRK07121 95 VGPGVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSG 174 (492)
T ss_pred hCCCCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCC
Confidence 888899999999999999999999999999975422110000 000000 00000 00111211111 11
Q ss_pred chHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEc-CeEEEccCCcCCC------CC---
Q 046556 182 TGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRA-ASTILATGGYGRA------YF--- 251 (633)
Q Consensus 182 ~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~~------~~--- 251 (633)
.+..+...|.+.+++.|++|+++++|++|+.|++++|+||++.+ +++...|+| +.|||||||++++ |.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~--~~~~~~i~a~k~VVlAtGg~~~N~em~~~~~p~~ 252 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARR--YGETVAIRARKGVVLAAGGFAMNREMVARYAPAY 252 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEe--CCcEEEEEeCCEEEECCCCcCcCHHHHHHhCCcc
Confidence 47789999999999999999999999999985567999998853 566667899 9999999999863 22
Q ss_pred ---CCCCCCCCchHHHHHHHHcCCCccCccccccccccccCCcceeeeccccCCCcEEECCCCCccccccCCccccccch
Q 046556 252 ---SATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASR 328 (633)
Q Consensus 252 ---~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r 328 (633)
.+.+++.+||||+.||+++||.+.+|+++++++....+ .. ..++++||.+|+||++|..+.
T Consensus 253 ~~~~~~~~~~~tGdG~~ma~~aGa~l~~~~~~~~~~~~~~~-~~--------~~~~i~Vn~~G~RF~nE~~~~------- 316 (492)
T PRK07121 253 AGGLPLGTTGDDGSGIRLGQSAGGATAHMDQVFAWRFIYPP-SA--------LLRGILVNARGQRFVNEDTYG------- 316 (492)
T ss_pred cCCcCCCCCCCccHHHHHHHHhCCccccCchhhhhCcccCC-CC--------cCCeEEECCCCCEeecCCCcH-------
Confidence 23355689999999999999999999998876433211 11 125799999999999975432
Q ss_pred hHHhHHHH----------------HHHHhcC--CCCCCCCeEE-E-------ecCCCChhHHHHHhHHHHHHHHHHcCCC
Q 046556 329 DVVSRSMT----------------MEIREGR--GVGPLKDHIY-L-------HLNHLPPDVLKERLPGISETAAIFAGVD 382 (633)
Q Consensus 329 ~~~~~~i~----------------~e~~~g~--g~~~~~~~v~-~-------d~~~~~~~~l~~~~~~~~~~~~~~~G~d 382 (633)
+.++..+. ....... ......+.++ . ...+++++.|++++.+||+.|. .|.|
T Consensus 317 ~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~~~~~~~~kadtleeLA~~~gid~~~l~~tv~~yN~~~~--~G~D 394 (492)
T PRK07121 317 ARIGQFILEQPGGTAYLIVDEALFEEARAQLRPQIDGRTPGAWKAETVEELARKLGIPPGGLQATVDAYNRAAA--GGED 394 (492)
T ss_pred HHHHHHHHhccCCcEEEEEeHHHHhhhccccccccccccCcccccCCHHHHHHHhCCCHHHHHHHHHHHHHHhh--cCCC
Confidence 11222211 1110000 0000000111 1 1235788899999999999986 5666
Q ss_pred CC------------CCC---eecc----ccccccccCcccCCC-CceeeecCCCCCCcccCeeeecccccccccCCCCCC
Q 046556 383 VT------------KEP---IPVL----PTVHYNMGGIPTNHH-GEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLG 442 (633)
Q Consensus 383 ~~------------~~~---i~v~----p~~~~~~GGi~vd~~-~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlg 442 (633)
+. +.| +++. |..++|+||+.||++ +|||+. ++++|||||||||++ +++||.+|++
T Consensus 395 ~~f~r~~~~l~pi~~~PfYa~~~~~~~~~~~~~T~GGl~id~~~~qVld~----~g~pI~GLYAaG~~~-gg~~g~~y~~ 469 (492)
T PRK07121 395 PPFHKQPEWLRPLDTGPFAAIDLSLGKAPTPGFTLGGLRVDEDTGEVLRA----DGAPIPGLYAAGRCA-SGIASNGYVS 469 (492)
T ss_pred cccCCCcccccccccCCeEEEEEecccCCcceeeccCeeECCCcceEECC----CCCCcCceEeccccc-ccCCCCCCCC
Confidence 42 122 2344 499999999999999 999987 458999999999997 6899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 046556 443 ANSLLDIVVFGRACANRVAEI 463 (633)
Q Consensus 443 g~~l~~a~~~G~~Ag~~aa~~ 463 (633)
|+++++|++|||+||++|++.
T Consensus 470 G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 470 GLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred ccccchhHHHHHHHHHHHHhh
Confidence 999999999999999999864
No 43
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=100.00 E-value=2.2e-45 Score=401.72 Aligned_cols=391 Identities=20% Similarity=0.212 Sum_probs=279.6
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC--CCCcccccccceeeecCCC-----CcCCHHHHHHHHHhcCC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP--TRSHTVAAQGGINAALGNM-----TEDDWRWHMYDTVKGSD 117 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~--~~g~t~~~~Gg~~~~~~~~-----~~d~~~~~~~d~~~~~~ 117 (633)
..++||||||+|+||++||++|+++|++|+||||... .+|++..+.| +.+..+.. ..++.+.++.++.....
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRN-LRCMHDAPQDVLVGAYPEEEFWQDLLRVTG 80 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCc-eeeeCCCchhhccccccHHHHHHHHHHhhC
Confidence 3569999999999999999999999999999999864 3455554444 54443321 23456778888888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC
Q 046556 118 WLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH 197 (633)
Q Consensus 118 ~~~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~ 197 (633)
+..++++++.+++.+.+.++||.++|++|.....+...... .+... ...|..+...|.+.+++.
T Consensus 81 ~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~--------------~~~~~--~g~g~~l~~~l~~~~~~~ 144 (466)
T PRK08274 81 GRTDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVAR--------------TNAFF--WGGGKALVNALYRSAERL 144 (466)
T ss_pred CCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCC--------------CCeee--cCCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999999764433221100 01111 112678889999999999
Q ss_pred CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC------CC-C------CCCCCCCchHHH
Q 046556 198 NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA------YF-S------ATSAHTCTGDGN 264 (633)
Q Consensus 198 gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~------~~-~------~~~~~~~tGdg~ 264 (633)
|++++++++|++|+. ++++|+||++.+ .+++...++|+.||+||||++.+ +. . ..+++.++|||+
T Consensus 145 gv~i~~~t~v~~l~~-~~g~v~gv~~~~-~~g~~~~i~a~~VIlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdG~ 222 (466)
T PRK08274 145 GVEIRYDAPVTALEL-DDGRFVGARAGS-AAGGAERIRAKAVVLAAGGFESNREWLREAWGQPADNFLVRGTPYNQGDLL 222 (466)
T ss_pred CCEEEcCCEEEEEEe-cCCeEEEEEEEc-cCCceEEEECCEEEECCCCCCCCHHHHHhhcCCchhhceecCCCCcccHHH
Confidence 999999999999998 678999998853 45666678999999999999864 11 1 235678999999
Q ss_pred HHHHHcCCCccCccccccccccccCCc-----ceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHH---
Q 046556 265 AMVSRAGLPLEDLEFVQFHPTGIYGAG-----CLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMT--- 336 (633)
Q Consensus 265 ~~a~~aGa~l~~~e~~~~~p~~~~~~~-----~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~--- 336 (633)
.|++++||.+.+ +..|+||+.+.... ... .......++++||.+|+||++|..+... ..+......+.
T Consensus 223 ~ma~~~Ga~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~vn~~G~RF~nE~~~~~~--~~~~~~~~~~~~~~ 298 (466)
T PRK08274 223 KALLDAGADRIG-DPSQCHAVAIDARAPLYDGGIC-TRIDCVPLGIVVNRDGERFYDEGEDFWP--KRYAIWGRLVAQQP 298 (466)
T ss_pred HHHHHcCCCccC-CccceeeEeecCCCCccCCcce-eeecccceEEEEcCCCcEEEecCCcccc--chHHHHHHHHHcCC
Confidence 999999999876 55777876443211 111 1122234579999999999997543210 01111111111
Q ss_pred --------HHHHhcCCCCCCCCeEE--------EecCCCChhHHHHHhHHHHHHHHHHcCC--------------CCCC-
Q 046556 337 --------MEIREGRGVGPLKDHIY--------LHLNHLPPDVLKERLPGISETAAIFAGV--------------DVTK- 385 (633)
Q Consensus 337 --------~e~~~g~g~~~~~~~v~--------~d~~~~~~~~l~~~~~~~~~~~~~~~G~--------------d~~~- 385 (633)
.+.......... ..++ .+..+++++.|++++.+||+.|. .|. +|.+
T Consensus 299 ~~~~~~i~d~~~~~~~~~~~-~~~~~adtleeLA~~~gi~~~~l~~tv~~yN~~~~--~g~~~~~~~d~~~~~~~~~~~~ 375 (466)
T PRK08274 299 GQIAYQIFDAKAIGRFMPPV-FPPIQADTLEELAEKLGLDPAAFLRTVAAFNAAVR--PGPFDPTVLDDCGTEGLTPPKS 375 (466)
T ss_pred CceEEEEeCchhHhhcCccc-CCccccCCHHHHHHHhCcCHHHHHHHHHHHHHhcc--ccCCCcccccccccccCCCCcc
Confidence 000000000000 0000 01235788889999999999886 332 1111
Q ss_pred ---CC--------eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeeccccccc-ccCCCCCChhhHHHHHHHH
Q 046556 386 ---EP--------IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACAS-VHGANRLGANSLLDIVVFG 453 (633)
Q Consensus 386 ---~~--------i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g-~~Ga~rlgg~~l~~a~~~G 453 (633)
.| +++.|..|+|+||++||+++|||+. ++++||||||||||+ ++ +||+||++|++|++|++||
T Consensus 376 ~~~~~i~~~Pfya~~~~p~~~~t~GGl~~d~~~~vl~~----~g~~I~GLYAaGe~~-gg~~~g~~y~~g~~l~~~~~~G 450 (466)
T PRK08274 376 HWARPIDTPPFYAYPVRPGITFTYLGLKVDEDARVRFA----DGRPSPNLFAAGEMM-AGNVLGKGYPAGVGLTIGAVFG 450 (466)
T ss_pred cccCccCCCCeEEEEeccceeeecccEEECCCceEECC----CCCCCCCceeccccc-ccccccCCCccccchhhhhhhH
Confidence 12 4889999999999999999999986 458999999999998 46 9999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 046556 454 RACANRVAEIQRP 466 (633)
Q Consensus 454 ~~Ag~~aa~~~~~ 466 (633)
++||++|+++++.
T Consensus 451 ~iag~~aa~~~~~ 463 (466)
T PRK08274 451 RIAGEEAARHAQH 463 (466)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988654
No 44
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-45 Score=402.87 Aligned_cols=400 Identities=22% Similarity=0.258 Sum_probs=280.3
Q ss_pred cccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCccccccc-ceeeecCCC-----CcCCHHHHHHHHHhcC
Q 046556 43 IVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQG-GINAALGNM-----TEDDWRWHMYDTVKGS 116 (633)
Q Consensus 43 ~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~G-g~~~~~~~~-----~~d~~~~~~~d~~~~~ 116 (633)
.|+.++||||||+| ||++||++|++.|++|+||||....+|++..+.| ++....... ..++.+..+..+....
T Consensus 3 ~~d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 81 (513)
T PRK12837 3 AWDEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVV 81 (513)
T ss_pred CCCCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHh
Confidence 36678999999999 9999999999999999999998776777766555 343321111 1344454444555545
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-CCCcccccCCCccc----ccccCCcccccCCC---------------Cc-cc-e
Q 046556 117 DWLGDQDAIQYMCREAPKAVIELEN-YGLPFSRTEDGKIY----QRAFGGQSLDFGKG---------------GQ-AY-R 174 (633)
Q Consensus 117 ~~~~~~~~v~~~~~~~~~~~~~l~~-~Gv~f~~~~~g~~~----~~~~gg~~~~~~~g---------------~~-~~-r 174 (633)
..+.++++++.+++++.+.++||++ .|++|......... ....+++....... .. .. +
T Consensus 82 ~~~~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (513)
T PRK12837 82 GDRTPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERL 161 (513)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhh
Confidence 5567999999999999999999987 69998643211000 00001100000000 00 00 0
Q ss_pred eEEccC--CchHHHHHHHHHHHHhC-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcC-eEEEccCCcCCC-
Q 046556 175 CACAAD--RTGHALLHTLYGQAMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAA-STILATGGYGRA- 249 (633)
Q Consensus 175 ~~~~~~--~~g~~l~~~l~~~a~~~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~~~- 249 (633)
...... ..|..++..|.+.+.+. |++++++++|++|+. ++++|+||++.. +|+...|+|+ .|||||||++++
T Consensus 162 ~~~~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~-~~g~v~Gv~~~~--~g~~~~i~A~k~VIlAtGG~~~n~ 238 (513)
T PRK12837 162 GAPPPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVV-EDGRVVGAVVER--GGERRRVRARRGVLLAAGGFEQND 238 (513)
T ss_pred ccCCCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEe-cCCEEEEEEEEE--CCcEEEEEeCceEEEeCCCccCCH
Confidence 000000 13567888887777664 999999999999999 588999998853 6777789996 799999999876
Q ss_pred -----CC------CCCCCCCCchHHHHHHHHcCCCccCccccccccccccCCcceeeeccccCCCcEEECCCCCcccccc
Q 046556 250 -----YF------SATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVGSRGEGGILRNSEGERFMERY 318 (633)
Q Consensus 250 -----~~------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~ 318 (633)
|. .+.+++.+||||++||+++||.+.+|+++|++|....+.+.. ....+..++++||.+|+||++|.
T Consensus 239 ~m~~~~~~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~~~p~~~~~~~~~--~~~~~~~~~i~Vn~~GkRF~nE~ 316 (513)
T PRK12837 239 DMRARYGVPGSARDTMGGPGNTGLAHQAAIAVGADTDLMDQAWWSPGLTHPDGRS--AFALWFTGGIFVDQHGERFVNES 316 (513)
T ss_pred HHHHHhccccccCCCCCCCCCCcHHHHHHHHcCCCccccccccccceeecCCCcc--eeccccCceEEECCCCCCcccCC
Confidence 53 345667899999999999999999999999998544332211 12233457899999999999864
Q ss_pred CCccccccchhHHhHHHHHHHHhcCC--C------------------CC--------CCCeEEE--e-------cCCCCh
Q 046556 319 APTAKDLASRDVVSRSMTMEIREGRG--V------------------GP--------LKDHIYL--H-------LNHLPP 361 (633)
Q Consensus 319 ~~~~~~l~~r~~~~~~i~~e~~~g~g--~------------------~~--------~~~~v~~--d-------~~~~~~ 361 (633)
. +++.+++++..+...+.. + .+ ....+++ | ..++++
T Consensus 317 ~-------~~~~~~~a~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~g~~~kaDTleELA~k~gid~ 389 (513)
T PRK12837 317 A-------PYDRLGRAVIAEMDSGGMTLPFWMIYDDREGEVPPVKATNVSMVETAQYVAAGLWRTADTLEELAAKIGVPA 389 (513)
T ss_pred C-------cHhHHHHHHHhhcccCCCCcceEEEECchhhhccCccccCCCCcCcHHHhhcCCeeecCCHHHHHHHcCCCH
Confidence 3 445555555543322110 0 00 0001111 1 235688
Q ss_pred hHHHHHhHHHHHHHHHHcCCCCC-----------------------CCC---eeccccccccccCcccCCCCceeeecCC
Q 046556 362 DVLKERLPGISETAAIFAGVDVT-----------------------KEP---IPVLPTVHYNMGGIPTNHHGEVVTIKGD 415 (633)
Q Consensus 362 ~~l~~~~~~~~~~~~~~~G~d~~-----------------------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~ 415 (633)
+.|++++.+||+.|. .|.|+. +.| +++.|..++|+||++||+++|||+.
T Consensus 390 ~~L~~Tv~~yN~~~~--~g~D~dFgr~~~~~~~~~~~~~~~l~~i~~~PfYA~~~~p~~~~T~GGl~in~~~qVl~~--- 464 (513)
T PRK12837 390 DALTATVARFNGFAA--AGVDEDFGRGDEAYDRAFSGGASPLVPIDTPPFHAAAFGVSDLGTKGGLRTDTAARVLDT--- 464 (513)
T ss_pred HHHHHHHHHHHHHHh--cCCCccCCCCcchhhccccCCcccceecccCCeEEEEeccccceeCCCceECCCceEECC---
Confidence 889999999999986 454431 122 4677899999999999999999987
Q ss_pred CCCCcccCeeeecccccccccCCCCCC-hhhHHHHHHHHHHHHHHHHH
Q 046556 416 DPDEVVPGLMAAGEAACASVHGANRLG-ANSLLDIVVFGRACANRVAE 462 (633)
Q Consensus 416 ~~~T~ipGLyAaGe~a~~g~~Ga~rlg-g~~l~~a~~~G~~Ag~~aa~ 462 (633)
++++|||||||||++ ++++|.+|++ |++++.|++|||+||++|+.
T Consensus 465 -~g~pIpGLYAaG~~~-gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 465 -DGRPIPGLYAAGNTM-AAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred -CCCEeCCceeccccc-ccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 458999999999998 6899999986 89999999999999999864
No 45
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=4.8e-45 Score=402.50 Aligned_cols=400 Identities=21% Similarity=0.256 Sum_probs=283.1
Q ss_pred ccccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCC------CCcCCHHHHHHHHHhc
Q 046556 42 TIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN------MTEDDWRWHMYDTVKG 115 (633)
Q Consensus 42 ~~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~------~~~d~~~~~~~d~~~~ 115 (633)
+.++.++||||||+| +|++||+.|++.|++|+||||....+|.+..+.|+++. .++ ...++.+..+.++.+.
T Consensus 11 ~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~~gG~~~~-~~~~~~~~~g~~ds~e~~~~y~~~~ 88 (564)
T PRK12845 11 PVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTARSGGAFWL-PASPVLDEAGAGDTLERARTYLDSV 88 (564)
T ss_pred CCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccCcCCCEec-CChHHHHHhCcchhHHHHHHHHHHH
Confidence 356779999999999 89999999999999999999987777777666555543 221 1246777788888777
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH-CCCcccccCCC-cccccccCCc----ccc---cC------------CC-----
Q 046556 116 SDWLGDQDAIQYMCREAPKAVIELEN-YGLPFSRTEDG-KIYQRAFGGQ----SLD---FG------------KG----- 169 (633)
Q Consensus 116 ~~~~~~~~~v~~~~~~~~~~~~~l~~-~Gv~f~~~~~g-~~~~~~~gg~----~~~---~~------------~g----- 169 (633)
.....++++++.|+++++++++||++ .|+.|.....- .++....++. ... +. .+
T Consensus 89 ~~~~~~~~li~~~~~~~~~~i~wl~~~~gv~~~~~~~~~d~~~~~~g~~~~gr~~~~~~~~~~~~g~~~~~~~~~~~~~~ 168 (564)
T PRK12845 89 VGGSAPAERSAAFLDNGSATVDMLRRTTPMRFFWARGYSDYHPEQPGGSAAGRTCECRPFDTAVLGEYRPRLRPGVMEVS 168 (564)
T ss_pred hCCCCCHHHHHHHHHhhHHHHHHHHhcCCceEEECCCCCCCCCCCCCCCCCCCcccCCCCChhHhhhHHHhcCCcccccc
Confidence 77788999999999999999999988 67877432210 0111111110 000 00 00
Q ss_pred ----------------CccceeE----------------E--ccCCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccC
Q 046556 170 ----------------GQAYRCA----------------C--AADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSD 215 (633)
Q Consensus 170 ----------------~~~~r~~----------------~--~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~ 215 (633)
...++.. . .....|..++..|.+.+++.|++|++++++++|+. ++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~ 247 (564)
T PRK12845 169 IPMPVTGADYRWLNLMARVPRKALPRIAKRLAQGVGGLALGRRYAAGGQALAAGLFAGVLRAGIPIWTETSLVRLTD-DG 247 (564)
T ss_pred ccccccHHHHHHHHHhhcCcchhHHHHHHHHHHHHhhhccCCcccCChHHHHHHHHHHHHHCCCEEEecCEeeEEEe-cC
Confidence 0000000 0 00124677888999999999999999999999998 57
Q ss_pred CcEEEEEEEEcCCCeEEEEEc-CeEEEccCCcCCC------CCC-------CCCCCCCchHHHHHHHHcCCCccCccccc
Q 046556 216 GTCQGVIALNMEDGTLHRFRA-ASTILATGGYGRA------YFS-------ATSAHTCTGDGNAMVSRAGLPLEDLEFVQ 281 (633)
Q Consensus 216 g~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~~------~~~-------~~~~~~~tGdg~~~a~~aGa~l~~~e~~~ 281 (633)
|+|+||++.+ +|+...+.| +.||||||||+++ |.+ +.+++.+||||+.||+++||.+.+|++.|
T Consensus 248 g~V~GV~~~~--~g~~~~i~a~kaVILAtGGf~~n~em~~~y~p~~~~~~~~~~~~~~tGDGi~ma~~aGA~l~~m~~~~ 325 (564)
T PRK12845 248 GRVTGAVVDH--RGREVTVTARRGVVLAAGGFDHDMEMRWKFQSESLGEHASLGAEGNTGDAIRIAQDLGAAIGLMDQAW 325 (564)
T ss_pred CEEEEEEEEE--CCcEEEEEcCCEEEEecCCccccHHHHHHhCCCccccccccCCCCCCCHHHHHHHHcCCCccCCccce
Confidence 9999998764 455556776 6899999999986 332 45667999999999999999999999999
Q ss_pred cccccccCCc----ceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHH-----------------HH
Q 046556 282 FHPTGIYGAG----CLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTME-----------------IR 340 (633)
Q Consensus 282 ~~p~~~~~~~----~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e-----------------~~ 340 (633)
+||+.....+ .++ .+. ...++++||++|+||++|..++. .+.+++..+ ..
T Consensus 326 ~~p~~~~~~~~~~~~~~-~~~-~~~g~i~VN~~G~RF~nE~~~~~-------~~~~~~~~~~~~~~~~~~~~~I~D~~~~ 396 (564)
T PRK12845 326 WFPAVAPLPGGAPAVML-AER-SLPGSLIVDQTGRRFVNEATDYM-------SFGQRVLERERAGDPVESMWIVFDQQYR 396 (564)
T ss_pred EecccccCCCCCcccch-hhh-ccCceEEECCCCCEecCCCCchh-------HHHHHHHhhhccCCCCceEEEEECchhh
Confidence 9987542211 111 111 12568999999999999854431 111111110 00
Q ss_pred hcC----CCCC---------CCCeEE-E-------ecCCCChhHHHHHhHHHHHHHHHHcCCCCC---------------
Q 046556 341 EGR----GVGP---------LKDHIY-L-------HLNHLPPDVLKERLPGISETAAIFAGVDVT--------------- 384 (633)
Q Consensus 341 ~g~----g~~~---------~~~~v~-~-------d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~--------------- 384 (633)
... ...+ ..+.++ . ...++|++.|++++.+||+.|. .|.|+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~--~G~D~dFgr~~~~~~~~~gd~ 474 (564)
T PRK12845 397 NSYVFAAELFPRMPIPQAWYDAGIAHRADSLADLARKIGVPVDTFVATMRRFNEMAA--AGVDSDFGRGRSAYDRYYGDP 474 (564)
T ss_pred hhcccccccCCCCcccHhHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCCCCCCCCCchhhhhcCCC
Confidence 000 0000 001111 1 1246788999999999999986 455542
Q ss_pred ------------CCC---eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCC-hhhHHH
Q 046556 385 ------------KEP---IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLG-ANSLLD 448 (633)
Q Consensus 385 ------------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlg-g~~l~~ 448 (633)
+.| +++.|..+.|+||+.||+++|||+. ++++||||||||+++ ++++|.+|++ |++++.
T Consensus 475 ~~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~id~~~qVLd~----dg~pI~GLYAaG~~~-gg~~g~~Y~g~G~~lg~ 549 (564)
T PRK12845 475 TVTPNPNLRPLDKGPFYAVKMVLSDLGTCGGLRADERARVLRE----DGSVIDGLYAIGNTA-ANAFGATYPGAGATIGQ 549 (564)
T ss_pred cCCCCcccCccccCCEEEEEeccccceecCCeeECCCceEECC----CCCCCCCeeEeeeec-cccccCCCCCcchhhHH
Confidence 112 5677899999999999999999986 558999999999998 6899999997 999999
Q ss_pred HHHHHHHHHHHHHH
Q 046556 449 IVVFGRACANRVAE 462 (633)
Q Consensus 449 a~~~G~~Ag~~aa~ 462 (633)
|++||++||++|++
T Consensus 550 a~~fGriAg~~aa~ 563 (564)
T PRK12845 550 GLVYGYIAAQDAAA 563 (564)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999874
No 46
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=6.9e-45 Score=402.54 Aligned_cols=412 Identities=23% Similarity=0.313 Sum_probs=282.7
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCC-----CCcCCHHHHH---HHHHhc
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN-----MTEDDWRWHM---YDTVKG 115 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~-----~~~d~~~~~~---~d~~~~ 115 (633)
|+.++||||||+|++|++||+.|+++|++|+||||....+|.+..+.|+++..... ...++.+.++ .++...
T Consensus 3 ~d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 82 (557)
T PRK12844 3 WDETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGD 82 (557)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhcc
Confidence 56689999999999999999999999999999999877667666666665432111 0123344332 233222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCcccccCC-CcccccccCCcccc-------cC------------CCCc----
Q 046556 116 SDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTED-GKIYQRAFGGQSLD-------FG------------KGGQ---- 171 (633)
Q Consensus 116 ~~~~~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~-g~~~~~~~gg~~~~-------~~------------~g~~---- 171 (633)
.....++++++.+++++++.++||+++|++|...+. ..++....++++.. +. .+..
T Consensus 83 ~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (557)
T PRK12844 83 QGPASSPERREAYLRAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPG 162 (557)
T ss_pred cccCCCHHHHHHHHhhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccccccc
Confidence 223378899999999999999999999999975321 01111111221100 00 0000
Q ss_pred ----------------cc-----------eeEE------ccCCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcE
Q 046556 172 ----------------AY-----------RCAC------AADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTC 218 (633)
Q Consensus 172 ----------------~~-----------r~~~------~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v 218 (633)
.+ |+++ .....|..++..|.+.+++.|++++++++|++|+. ++++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~-~~g~v 241 (557)
T PRK12844 163 TVVMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAALAAGVPLWTNTPLTELIV-EDGRV 241 (557)
T ss_pred ccccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEE
Confidence 00 0000 00124678888999999999999999999999999 57999
Q ss_pred EEEEEEEcCCCeEEEEEcC-eEEEccCCcCCC------CCC-------CCCCCCCchHHHHHHHHcCCCccCcccccccc
Q 046556 219 QGVIALNMEDGTLHRFRAA-STILATGGYGRA------YFS-------ATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHP 284 (633)
Q Consensus 219 ~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~~~------~~~-------~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p 284 (633)
+||++.. +|+.+.|.|+ .|||||||++++ |.+ +.+++.++|||+.|++++||.+.+|++.|++|
T Consensus 242 ~Gv~~~~--~g~~~~i~A~~aVIlAtGG~~~N~em~~~~~p~~~~~~~~~~~~~~tGDGi~ma~~~GA~l~~m~~~~~~p 319 (557)
T PRK12844 242 VGVVVVR--DGREVLIRARRGVLLASGGFGHNAEMRKRYQPQPNSGDWTNANPGDTGEVIEAAMRLGAALDLMDEAWWVP 319 (557)
T ss_pred EEEEEEE--CCeEEEEEecceEEEecCCccCCHHHHHHhcCCcccCcccCCCCCCCHHHHHHHHHcCCCccccccccccC
Confidence 9998863 6777788995 799999999984 543 23456899999999999999999999999998
Q ss_pred ccccCCc---ceeeeccccCCCcEEECCCCCccccccCCcccccc----------chhHHhHHHHHHHHhcCC---CC--
Q 046556 285 TGIYGAG---CLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLA----------SRDVVSRSMTMEIREGRG---VG-- 346 (633)
Q Consensus 285 ~~~~~~~---~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~----------~r~~~~~~i~~e~~~g~g---~~-- 346 (633)
+...+.+ ..+........++++||.+|+||++|..+.. .+. ..-++...+......+.. ..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~g~i~VN~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~ 398 (557)
T PRK12844 320 GAPLPNGGPRPYMHNSERSKPGSIIVDRAGRRFVNEAGSYM-EVGRAMYAQDAVPAWMIMDSRYRKRYLFGTIPPGPTPQ 398 (557)
T ss_pred ccccCCCCcccccccccccCCcEEEECCCCCccccCCCcHH-HHHHHHHhCCCceEEEEECchHHhhcCccccCCccChH
Confidence 7654322 1111122234678999999999999865431 100 000111111100000000 00
Q ss_pred --CCCCeEE--------EecCCCChhHHHHHhHHHHHHHHHHcCCCCCC---------------------------CC--
Q 046556 347 --PLKDHIY--------LHLNHLPPDVLKERLPGISETAAIFAGVDVTK---------------------------EP-- 387 (633)
Q Consensus 347 --~~~~~v~--------~d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~~---------------------------~~-- 387 (633)
...+.++ .+..+++++.|++++.+||+.|. .|.|+.. .|
T Consensus 399 ~~~~~g~~~kadTleELA~k~gid~~~L~atv~~yN~~~~--~G~D~dFgr~~~~~~~~~~~~~~~~~~~l~pi~~~PfY 476 (557)
T PRK12844 399 EWLDSGYMKRADTIEELAGKTGIDPAGLAATVERFNGFAA--TGTDPDFHRGESAYDRYYGDPTNKPNPSLGPLDKPPFY 476 (557)
T ss_pred HHhhcCceEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCCCccCCCcchhhccccCCcCCCCcccCcCCCCCeE
Confidence 0001111 12346788899999999999986 4555421 22
Q ss_pred -eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCC-hhhHHHHHHHHHHHHHHHHHHhC
Q 046556 388 -IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLG-ANSLLDIVVFGRACANRVAEIQR 465 (633)
Q Consensus 388 -i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlg-g~~l~~a~~~G~~Ag~~aa~~~~ 465 (633)
+++.|..+.|+||+.||+++|||+. ++++||||||||+++ ++++|.+|++ |+++++|++|||+||++|++..+
T Consensus 477 A~~~~~~~~~T~GGl~in~~~qVld~----~g~pIpGLYAAG~~~-gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~ 551 (557)
T PRK12844 477 AVRMVPGDVGTSGGLLTDEHARVLRE----DGSVIPGLYATGNCT-ASVMGRTYPGAGASIGNSFVFGYIAALHAAGARS 551 (557)
T ss_pred EEEEeccccEECCCccCCCCceEECC----CCCCccceeeccccc-cccccCCCCcCccchHHHHHHHHHHHHHHHhccC
Confidence 4667889999999999999999986 458999999999997 6899999998 99999999999999999988765
Q ss_pred C
Q 046556 466 P 466 (633)
Q Consensus 466 ~ 466 (633)
.
T Consensus 552 ~ 552 (557)
T PRK12844 552 A 552 (557)
T ss_pred C
Confidence 4
No 47
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=9.7e-44 Score=394.61 Aligned_cols=415 Identities=23% Similarity=0.292 Sum_probs=287.1
Q ss_pred ccccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCC-----CcCCHHHHHHHHHhcC
Q 046556 42 TIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM-----TEDDWRWHMYDTVKGS 116 (633)
Q Consensus 42 ~~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~-----~~d~~~~~~~d~~~~~ 116 (633)
..|+.++||||||+|+|||+||+.|+++|++|+||||....+|++..+.|++....... ..++++.++.++....
T Consensus 6 ~~~~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t~~s~G~i~~~~~~~q~~~G~~d~~~~~~~~~~~~~ 85 (584)
T PRK12835 6 QNFDREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTALSGGGIWVPGAPAQRREGYVPDPEDVRRYLKQIT 85 (584)
T ss_pred CCccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchHHHhCCCccccCChhhhhcCCCCCHHHHHHHHHHHh
Confidence 34778899999999999999999999999999999999887888888888886543321 2577888888888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCC--CcccccCCCc-ccccccC----Cccccc----------------------C
Q 046556 117 DWLGDQDAIQYMCREAPKAVIELENYG--LPFSRTEDGK-IYQRAFG----GQSLDF----------------------G 167 (633)
Q Consensus 117 ~~~~~~~~v~~~~~~~~~~~~~l~~~G--v~f~~~~~g~-~~~~~~g----g~~~~~----------------------~ 167 (633)
.+..++++++.+++++++.++||++.+ +.|.....-. ++....+ +..+.. .
T Consensus 86 ~~~~d~~~v~~~~~~s~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 165 (584)
T PRK12835 86 GGLVSAARLRAYVDAAPQMMEFLENLSPWLEFVWKPGYADYYPELPGGSPLGSTINVPPIDLRKLGEDEQHLLPPLALAP 165 (584)
T ss_pred cccCCHHHHHHHHHHhHHHHHHHHHhCCcceeeecCCCCccCCCCCCCCCCCCccCCCCCChhhhchhHHhccccccccc
Confidence 888999999999999999999999876 4443221100 0000000 000000 0
Q ss_pred CCC--------------------c-----cceeE----Ec--cCCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCC
Q 046556 168 KGG--------------------Q-----AYRCA----CA--ADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDG 216 (633)
Q Consensus 168 ~g~--------------------~-----~~r~~----~~--~~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g 216 (633)
.+. . .++.. .. ....|..++..|.+.+++.|++|++++.+++|+.|++|
T Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g 245 (584)
T PRK12835 166 KGIWFTPKDLRLFYMVRQTWAGKAVLLKLIWRMVRARVFGRRMAAIGQSLVARLRLALKDAGVPLWLDSPMTELITDPDG 245 (584)
T ss_pred ccccccHHHHHHHHhhccCcchHHHHHHHHHHHHHhhhccCccccccHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCC
Confidence 000 0 00000 00 01235567777888888899999999999999996679
Q ss_pred cEEEEEEEEcCCCeEEEEEcC-eEEEccCCcCCC------CCC-------CCCCCCCchHHHHHHHHcCCCccCcccccc
Q 046556 217 TCQGVIALNMEDGTLHRFRAA-STILATGGYGRA------YFS-------ATSAHTCTGDGNAMVSRAGLPLEDLEFVQF 282 (633)
Q Consensus 217 ~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~~~------~~~-------~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~ 282 (633)
+|+||++. .+++.+.|+|+ .||||||||+++ |.+ +.+++.++|||+.||+++||.+.+|+..++
T Consensus 246 ~V~Gv~~~--~~~~~~~i~a~~aVilAtGGf~~N~em~~~y~p~~~~~~~~~g~~~~tGDGi~ma~~~GA~~~~~~~~~~ 323 (584)
T PRK12835 246 AVVGAVVE--REGRTLRIGARRGVILATGGFDHDMDWRKEYLPELERKDWSFGNPANTGDGIRAGEKVGAATDLLDEAWW 323 (584)
T ss_pred cEEEEEEE--eCCcEEEEEeceeEEEecCcccCCHHHHHHhCCCCCcCcccCCCCCCCcHHHHHHHHcCCCcccCcccee
Confidence 99999885 36767789997 699999999963 221 344568999999999999999999987776
Q ss_pred ccccccCCcce--eeeccccCCCcEEECCCCCccccccCCcccc---c---c--------chhHHhHHHHHHHHh-cCCC
Q 046556 283 HPTGIYGAGCL--LLKVGSRGEGGILRNSEGERFMERYAPTAKD---L---A--------SRDVVSRSMTMEIRE-GRGV 345 (633)
Q Consensus 283 ~p~~~~~~~~~--~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~---l---~--------~r~~~~~~i~~e~~~-g~g~ 345 (633)
+|....+.+.. .+.+... .++++||.+|+||++|..+...- + . ..-++...+...... +...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~-~~~i~VN~~G~RF~nE~~~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~ 402 (584)
T PRK12835 324 FPAICWPDGRMQFMLNERMM-PAQFIVNGAGKRFINEAAPYMDFVHAMIAGQRSGVGHIPCWLVTDIRSFSRYVFGGHLP 402 (584)
T ss_pred cceeecCCCceeeeeeccCC-CceEEECCCCCcCcCCcCchhhHHHHHHhhccCCCCCcceEEEEChHHHhhcCcccccC
Confidence 66543332211 1122222 35799999999999986543100 0 0 001111111110000 0000
Q ss_pred --------------CC----CCCeEEE--------ecCCCChhHHHHHhHHHHHHHHHHcCCCCC---------------
Q 046556 346 --------------GP----LKDHIYL--------HLNHLPPDVLKERLPGISETAAIFAGVDVT--------------- 384 (633)
Q Consensus 346 --------------~~----~~~~v~~--------d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~--------------- 384 (633)
.+ ..+.++. +..+++++.|++++.+||+.|. .|.|+.
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~g~~~kAdTleeLA~~~gida~~L~aTV~~yN~~~~--~G~D~dFgr~~~~~~~~~~~~ 480 (584)
T PRK12835 403 IPKIPFAPVPTGRKFPQAWLESGVVKKADTWDELAAKIGVPAENLRATAERFNGLAR--KGHDDDFNRGDSAYDNYYGDP 480 (584)
T ss_pred CCccccccccccccCcHHHHhCCCeeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhh--cCcCcccCCCCcchhcccCCC
Confidence 00 0011111 1245788899999999999986 454431
Q ss_pred -----------CCC---eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCC-hhhHHHH
Q 046556 385 -----------KEP---IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLG-ANSLLDI 449 (633)
Q Consensus 385 -----------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlg-g~~l~~a 449 (633)
+.| +++.|..+.|+||+.||+++|||+. ++++|||||||||++ ++++|.+|++ |++++.|
T Consensus 481 ~~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~----~g~pIpGLYAAGe~~-Gg~~g~~Y~g~G~slg~a 555 (584)
T PRK12835 481 TLPNPNLDPLGKPPYYAFRIELGDLGTSGGLRTDEHARVLRE----DDSVIPGLYAVGNTS-ASVMGRSYAGAGATIGPA 555 (584)
T ss_pred CCCCccccccccCCeEEEEecccccccCcCccCCCCceEECC----CCCCccceeeeeecc-cccccCCCCcCccchHHH
Confidence 122 4667899999999999999999987 559999999999997 6899999987 8899999
Q ss_pred HHHHHHHHHHHHHHhCC
Q 046556 450 VVFGRACANRVAEIQRP 466 (633)
Q Consensus 450 ~~~G~~Ag~~aa~~~~~ 466 (633)
++|||+||++|++.++.
T Consensus 556 ~~fGriAG~~aa~~~~~ 572 (584)
T PRK12835 556 MTFGYVAARHAAAVVAA 572 (584)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 99999999999987654
No 48
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=5e-44 Score=396.58 Aligned_cols=403 Identities=21% Similarity=0.233 Sum_probs=276.8
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC--CCCCcccccccceeeecCCC-----CcCCHHHHHHHHHhcCC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF--PTRSHTVAAQGGINAALGNM-----TEDDWRWHMYDTVKGSD 117 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~--~~~g~t~~~~Gg~~~~~~~~-----~~d~~~~~~~d~~~~~~ 117 (633)
..++||||||+|+|||+||+.|+++|++|+||||.. ..+|++..+.|++....... ..|+++.++.++++.+.
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~ 81 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAG 81 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccC
Confidence 357999999999999999999999999999999987 56677777778776644321 26889999999998877
Q ss_pred CCCCHH-----HHHHHHHH-HHHHHHHHHHCCCcccccCC----CcccccccCCcccccCCCCccceeEEccCCchHHHH
Q 046556 118 WLGDQD-----AIQYMCRE-APKAVIELENYGLPFSRTED----GKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALL 187 (633)
Q Consensus 118 ~~~~~~-----~v~~~~~~-~~~~~~~l~~~Gv~f~~~~~----g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~ 187 (633)
+..+++ ++..+++. +++.++||+++|++|..... +.. ..+++ +...+| .+..+.+|..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~---~~~~~------~~~~~r-~~~~~~~G~~~~ 151 (549)
T PRK12834 82 FDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGG---DAGGH------GNSVPR-FHITWGTGPGVV 151 (549)
T ss_pred CCCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCc---ccCCc------ccccCc-eecCCCCcHHHH
Confidence 766655 36777775 79999999999999965321 110 11111 112224 344445677888
Q ss_pred HHHHHHHHh---C-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCC-------------CeEEEEEcCeEEEccCCcCCCC
Q 046556 188 HTLYGQAMK---H-NTQFFVEYFALDLIMNSDGTCQGVIALNMED-------------GTLHRFRAASTILATGGYGRAY 250 (633)
Q Consensus 188 ~~l~~~a~~---~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~-------------G~~~~i~A~~VVlAtGg~~~~~ 250 (633)
..|.+.+++ . |+++++++++++|+. ++++|+||++.+..+ ++...|+||.||||||||++++
T Consensus 152 ~~l~~~~~~~~~~~gv~i~~~t~~~~Li~-~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n~ 230 (549)
T PRK12834 152 EPFERRVREAAARGLVRFRFRHRVDELVV-TDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGNH 230 (549)
T ss_pred HHHHHHHHHHHHhCCceEEecCEeeEEEE-eCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCcccCH
Confidence 888776652 3 699999999999999 579999999753211 2346789999999999999762
Q ss_pred ------CC-----------CCCCCCCchHHHHHHHHcCCCccCccccccccccccCCcceee---eccccCCCcEEECCC
Q 046556 251 ------FS-----------ATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLL---KVGSRGEGGILRNSE 310 (633)
Q Consensus 251 ------~~-----------~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~~~~~~~~~---~~~~~g~g~~~vn~~ 310 (633)
.+ ++++..+||||+.||+++||.+.+|+.++.+|........... .....+.++++||.+
T Consensus 231 em~~~~~p~~~~~~~~~~~~~~~~~~tGdGi~ma~~aGA~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vn~~ 310 (549)
T PRK12834 231 ELVRRNWPERLGTPPKDMVSGVPAHVDGRMLGIAEAAGARVINRDRMWHYTEGIRNWDPIWPNHGIRILPGPSSLWFDAT 310 (549)
T ss_pred HHHHHhCccccCCCccccccCCCCCCCcHHHHHHHHcCCcEeCcccccccccccCCCCCcCccccceeccCCCEEEECCC
Confidence 11 2344458999999999999999999977665533211110000 001123467999999
Q ss_pred CCccccccCCcccccc------------chhHHhHHHHHHH--------------------HhcCCC---CC-----CCC
Q 046556 311 GERFMERYAPTAKDLA------------SRDVVSRSMTMEI--------------------REGRGV---GP-----LKD 350 (633)
Q Consensus 311 G~rf~~~~~~~~~~l~------------~r~~~~~~i~~e~--------------------~~g~g~---~~-----~~~ 350 (633)
|+||++|..+...... ...++...+.... ...... .. ..+
T Consensus 311 GkRF~nE~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 390 (549)
T PRK12834 311 GNRLPAPLFPGFDTLGTLKHILKTGYDYSWFILTQKIIEKEFALSGSEQNPDLTGKDWKLLLRRRGKGAPGPVEAFKDHG 390 (549)
T ss_pred CCCCCCCccccccHHHHHHHHhccCCccEEEEeCHHHHHHhhccCccccCcccccchhhhhhhhhcCCCCccHHHHHhcC
Confidence 9999998532100000 0011111111100 000000 00 001
Q ss_pred e-EE-Ee-------cCC-------CChhHHHHHhHHHHHHHHHHcCCCC----------------------------CCC
Q 046556 351 H-IY-LH-------LNH-------LPPDVLKERLPGISETAAIFAGVDV----------------------------TKE 386 (633)
Q Consensus 351 ~-v~-~d-------~~~-------~~~~~l~~~~~~~~~~~~~~~G~d~----------------------------~~~ 386 (633)
. ++ .| ..+ ++++.|++++..||..+....|.|+ .+.
T Consensus 391 ~~~~kAdTleELA~k~g~~~~~~~id~~~L~~tv~~yN~~~~~~fg~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 470 (549)
T PRK12834 391 EDFVVADDLEELVAGMNALTGEPLLDYAHLRRQIEARDREVANPFSKDAQITAIRNARRYLGDRLIRVAKPHRLLDPAAG 470 (549)
T ss_pred CcEEEeCCHHHHHHHhcccccccCCCHHHHHHHHHHHhhhhcCccccchhhhhhhhhhhhcccchhcccCCccccCCCCC
Confidence 0 11 12 123 7788899999988877653223432 233
Q ss_pred C---eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeeccccc---ccccCCCCCChhhHHHHHHHHHHHHHHH
Q 046556 387 P---IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAAC---ASVHGANRLGANSLLDIVVFGRACANRV 460 (633)
Q Consensus 387 ~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~---~g~~Ga~rlgg~~l~~a~~~G~~Ag~~a 460 (633)
| +++.|..+.|+||++||+++|||+. ++++|||||||||+++ ++++|.++++|+++++|++|||+||++|
T Consensus 471 PfYA~~~~~~~~~T~GGl~id~~~qVld~----dg~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~a 546 (549)
T PRK12834 471 PLIAVRLHILTRKTLGGLETDLDSRVLGA----DGTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAA 546 (549)
T ss_pred CEEEEEEeccccEEccCEeECCCCceeCC----CCCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHH
Confidence 4 5778999999999999999999987 4589999999999983 3788989999999999999999999998
Q ss_pred HH
Q 046556 461 AE 462 (633)
Q Consensus 461 a~ 462 (633)
++
T Consensus 547 a~ 548 (549)
T PRK12834 547 AR 548 (549)
T ss_pred hh
Confidence 74
No 49
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=100.00 E-value=1.2e-42 Score=376.05 Aligned_cols=382 Identities=18% Similarity=0.180 Sum_probs=266.5
Q ss_pred EECCchHHHHHHHHHHhCCCcEEEEeecCCC-CCcccccccceeeecC--C---CCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 52 VVGAGGAGLRAAIGLSEHGFNTACITKLFPT-RSHTVAAQGGINAALG--N---MTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 52 IIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~-~g~t~~~~Gg~~~~~~--~---~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
|||+|+||++||++|+++|++|+||||.... .|+++...++...... . ...++.+.++.++.+...+..+++++
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 80 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESLS 80 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHHH
Confidence 7999999999999999999999999997642 2333322222211100 0 12345667888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEY 205 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~ 205 (633)
+.+++++++.++||+++|++|....++.. +. . .+.++ ....+..++..|.+.+++.|++|++++
T Consensus 81 ~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~--------~~--~-----~~~~~-~~~~g~~l~~~L~~~a~~~Gv~i~~~~ 144 (432)
T TIGR02485 81 RLGIGRGSRDLRWAFAHGVHLQPPAAGNL--------PY--S-----RRTAF-LRGGGKALTNALYSSAERLGVEIRYGI 144 (432)
T ss_pred HHHHhcchhHHHHHHhCCceeeecCCCCc--------cc--c-----Cceee-ecCCHHHHHHHHHHHHHHcCCEEEeCC
Confidence 99999999999999999999975433211 00 0 01111 123567899999999999999999999
Q ss_pred EEEEEEEcc-CCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCC------C-C------CCCCCCCchHHHHHHHHcC
Q 046556 206 FALDLIMNS-DGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY------F-S------ATSAHTCTGDGNAMVSRAG 271 (633)
Q Consensus 206 ~v~~L~~d~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~------~-~------~~~~~~~tGdg~~~a~~aG 271 (633)
+|++|+.++ +++|+||.+. .++ ..+.||.|||||||++.+. . . ..+.+.+||||+.|++++|
T Consensus 145 ~v~~l~~~~~~g~v~gv~~~--~~~--~~i~ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~~tGdgi~ma~~~G 220 (432)
T TIGR02485 145 AVDRIPPEAFDGAHDGPLTT--VGT--HRITTQALVLAAGGLGANRDWLRKTHGPRADGIANRGTPYQLGGLLLQLLAEG 220 (432)
T ss_pred EEEEEEecCCCCeEEEEEEc--CCc--EEEEcCEEEEcCCCcccCHHHHHhhcCCccccccccCCCCcccHHHHHHHHcC
Confidence 999999843 6889998762 222 3689999999999998641 1 1 1244688999999999999
Q ss_pred CCccCccccccccccccCC-----cceeeeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHH--------
Q 046556 272 LPLEDLEFVQFHPTGIYGA-----GCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTME-------- 338 (633)
Q Consensus 272 a~l~~~e~~~~~p~~~~~~-----~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e-------- 338 (633)
|.+.++. .+.|++...+. +... .......++++||.+|+||++|..+.. ...+..+...+..+
T Consensus 221 a~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~vn~~G~RF~~E~~~~~--~~~~~~~~~~~~~~~~~~~~~i 296 (432)
T TIGR02485 221 AQAIGDP-TDGHVVAVDARAPFHDGGIV-TRIDGMQLGIVVGRDGRRFADEGAIRG--PERYAVWGRQLASRPGQRAYIL 296 (432)
T ss_pred ccccCCC-CcceeEeecCCCCcCCCcee-eeecccccEEEECCCCCEeeecCCccc--cchHHHHHHHHHhCCCCeEEEE
Confidence 9987654 34454432211 0111 111223467999999999999864421 01111111111110
Q ss_pred ----HHhcCCCCCCCCeEEEe-------cCCCChhHHHHHhHHHHHHHHHHcCCCCC-CCC---eeccccccccccCccc
Q 046556 339 ----IREGRGVGPLKDHIYLH-------LNHLPPDVLKERLPGISETAAIFAGVDVT-KEP---IPVLPTVHYNMGGIPT 403 (633)
Q Consensus 339 ----~~~g~g~~~~~~~v~~d-------~~~~~~~~l~~~~~~~~~~~~~~~G~d~~-~~~---i~v~p~~~~~~GGi~v 403 (633)
..+.... .....+-.| ..+++++.|++++.+||+.|. .|..|- +.| +++.|..|+|+||+.|
T Consensus 297 ~D~~~~~~~~~-~~~~~~~adtleeLA~~~gid~~~l~~tv~~yN~~~~--~g~~~i~~~PfYa~~~~p~~~~T~GGl~i 373 (432)
T TIGR02485 297 LDADAAKRLPP-MACPPLSADTLEELAGLLGIDPGGLAETLDRPNAAPR--TGARMILVVPFHAYPMIPGITFTRYGLVV 373 (432)
T ss_pred ecchhhhhccc-ccCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHHHh--cCCCCCCCCCeEEEEeecccceeccceEE
Confidence 0000000 000001111 236788889999999999987 454443 444 7899999999999999
Q ss_pred CCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHh
Q 046556 404 NHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQ 464 (633)
Q Consensus 404 d~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~ 464 (633)
|+++||++. ++++|||||||||++++++||.+|++|+++++|++|||+||++|++..
T Consensus 374 d~~~~Vl~~----~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~~~ 430 (432)
T TIGR02485 374 DATARVRLN----DAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAARLA 430 (432)
T ss_pred CCCceEECC----CCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHHhh
Confidence 999999986 458999999999997567999999999999999999999999998764
No 50
>PRK12839 hypothetical protein; Provisional
Probab=100.00 E-value=3e-41 Score=373.35 Aligned_cols=410 Identities=23% Similarity=0.268 Sum_probs=271.6
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCC-----CcCCHHHHHHHHHhcCCC
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNM-----TEDDWRWHMYDTVKGSDW 118 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~-----~~d~~~~~~~d~~~~~~~ 118 (633)
.+.++||||||+|++|++||+.|+++|++|+||||....+|.+..+.|+++...... ..++.+..+.++......
T Consensus 5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 84 (572)
T PRK12839 5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWTPGNSLARADGVVEDKEEPRTYLEHRLGE 84 (572)
T ss_pred cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccccCCeeecCCchhhhhccCcCchhhHHHHHHHHhCC
Confidence 345799999999999999999999999999999998777777766655554322111 135555556566666667
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-CCCcccccCCC-cccccccC----Ccccc--------cCC----------------
Q 046556 119 LGDQDAIQYMCREAPKAVIELEN-YGLPFSRTEDG-KIYQRAFG----GQSLD--------FGK---------------- 168 (633)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~~~l~~-~Gv~f~~~~~g-~~~~~~~g----g~~~~--------~~~---------------- 168 (633)
..++++++.+++.++++++||++ .+++|.....- .++....+ +.++. ++.
T Consensus 85 ~~~~~~~~~~~~~s~e~i~wL~~~~~v~f~~~~~~~d~~~~~~~~~~~gr~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 164 (572)
T PRK12839 85 NYDADKVDALLDGAPEMVDFFEKKTALQFVPGAKIADIYGDLPGAGTGHRSVGPKPVNLRKLGPDVAALLRHQLYETSFL 164 (572)
T ss_pred CCCHHHHHHHHHhCHHHHHHHHhCCceEEEECCCCCCCCCCCCCCCCCCceecCCCCChhhcChHHHHhcCCCccccccc
Confidence 88999999999999999999998 67777421110 00000000 00000 000
Q ss_pred CCc---------------cc-----------e-----eE-Ecc--CCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEcc
Q 046556 169 GGQ---------------AY-----------R-----CA-CAA--DRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNS 214 (633)
Q Consensus 169 g~~---------------~~-----------r-----~~-~~~--~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~ 214 (633)
|.. .+ + .. ... ...|..++..|.+.+++.|++|+.++.+++|+.++
T Consensus 165 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~ 244 (572)
T PRK12839 165 GMGIMAGPDLQAFLHATQDPKGFVHAARRVIVHMWDLATHRRGMQLVNGTALTGRLLRSADDLGVDLRVSTSATSLTTDK 244 (572)
T ss_pred ccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECC
Confidence 000 00 0 00 000 01366788889999999999999999999999855
Q ss_pred CCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC-------CCCC--------CCCCCCCchHHHHHHHHcCCCccCcc-
Q 046556 215 DGTCQGVIALNMEDGTLHRFRAASTILATGGYGR-------AYFS--------ATSAHTCTGDGNAMVSRAGLPLEDLE- 278 (633)
Q Consensus 215 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~-------~~~~--------~~~~~~~tGdg~~~a~~aGa~l~~~e- 278 (633)
+++|+||++.+ .+++...+.++.||||||||++ .+.. +.+++.+||||+.|++++||.+.++.
T Consensus 245 ~g~V~GV~~~~-~~g~~~i~aak~VVLAtGGf~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGdGi~ma~~~GA~l~~~~~ 323 (572)
T PRK12839 245 NGRVTGVRVQG-PDGAVTVEATRGVVLATGGFPNDVDRRKELFPRTPTGREHWTLAPAETTGDGISLAESVGARLDRDLA 323 (572)
T ss_pred CCcEEEEEEEe-CCCcEEEEeCCEEEEcCCCcccCHHHHHHhCCCCCCCCccccCCCCCCCcHHHHHHHHhCCccccCCc
Confidence 78999999865 4666555566899999999997 2322 12456899999999999999998743
Q ss_pred -ccccccccccCC-----cceeeecccc-CCCcEEECCCCCccccccCCcccccc--------------chhHHhHHHHH
Q 046556 279 -FVQFHPTGIYGA-----GCLLLKVGSR-GEGGILRNSEGERFMERYAPTAKDLA--------------SRDVVSRSMTM 337 (633)
Q Consensus 279 -~~~~~p~~~~~~-----~~~~~~~~~~-g~g~~~vn~~G~rf~~~~~~~~~~l~--------------~r~~~~~~i~~ 337 (633)
..+++|..+.+. +.+. ....+ ..+.++||.+|+||++|..+.. ++. ..-++...+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~VN~~GkRF~nE~~~~~-~~~~~~~~~~~~~~~~~~~~I~D~~~~~ 401 (572)
T PRK12839 324 SPAAWCPVSLVPYRNGKVGTFP-HIMDRGKPGSIGVLATGKRFVNEANGYY-DYTLAMVKAAPEGEPVCSWLIADSRFVR 401 (572)
T ss_pred ccccccceecccCCCCcccccc-ccccccCCceEEECCCCCcCCCCCCccc-cHHHHHHHhccCCCCccEEEEeChHHHh
Confidence 334455433211 0000 00011 2467999999999999864431 000 00011111110
Q ss_pred HHHhcC--C----CCC--CCCeEE--------EecCCCChhHHHHHhHHHHHHHHHHcCCCCC-----------------
Q 046556 338 EIREGR--G----VGP--LKDHIY--------LHLNHLPPDVLKERLPGISETAAIFAGVDVT----------------- 384 (633)
Q Consensus 338 e~~~g~--g----~~~--~~~~v~--------~d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~----------------- 384 (633)
....+. . ... ..+.++ .+..+++++.|++++.+||+.|. .|.|+.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~k~gid~~~L~~TV~~yN~~~~--~G~D~dFgr~~~~~~~~~gd~~~ 479 (572)
T PRK12839 402 KYPLGMAKPLPVPLTPYLRSGYLTRGRTIEELAEKCGIDPAGLEATVAEFNENAR--DGEDPEFGRGTTPFNRGSGDPDN 479 (572)
T ss_pred hccccccCCCCCccHhHhhcCcEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHhh--cCCCcCcCCCcchhhcccCCccc
Confidence 000000 0 000 001111 12246788999999999999986 455432
Q ss_pred ----------CCC---eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCC-CChhhHHHHH
Q 046556 385 ----------KEP---IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANR-LGANSLLDIV 450 (633)
Q Consensus 385 ----------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~r-lgg~~l~~a~ 450 (633)
+.| +++.|..+.|+||+.||+++|||+. ++++|||||||||++ ++++|.+| ++|++++.|+
T Consensus 480 ~~~~~l~pi~~gPfYA~~~~p~~~~T~GGl~in~~~qVLd~----dg~pIpGLYAAG~~~-gg~~g~~Y~~~G~~lg~a~ 554 (572)
T PRK12839 480 GPNPSLAPLEKGPFYAVKVVPGSFGTFAGLVADGKSRVLRD----DDTPIDGLYAAGNDQ-ASVMGGHYPSGGINLGPAM 554 (572)
T ss_pred CCCcccccCCCCCeEEEEEeccccccCCCccCCCCceEECC----CCCCcCCceeccccc-cccccCCCCCcccchhHHH
Confidence 112 5677899999999999999999987 558999999999998 68888776 6799999999
Q ss_pred HHHHHHHHHHHHH
Q 046556 451 VFGRACANRVAEI 463 (633)
Q Consensus 451 ~~G~~Ag~~aa~~ 463 (633)
+||++||++|++.
T Consensus 555 ~fGriAg~~aA~~ 567 (572)
T PRK12839 555 TFGYIAGRELAGS 567 (572)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999753
No 51
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=100.00 E-value=2e-41 Score=375.40 Aligned_cols=408 Identities=25% Similarity=0.295 Sum_probs=272.5
Q ss_pred cccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCC-----CCcCCHHHHHHHHHhcCC
Q 046556 43 IVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN-----MTEDDWRWHMYDTVKGSD 117 (633)
Q Consensus 43 ~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~-----~~~d~~~~~~~d~~~~~~ 117 (633)
|++.++||||||+|++|++||+.|+++|++|+||||....+|++..+.|+++..... ...++.+....++.....
T Consensus 3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 82 (557)
T PRK07843 3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARSGGGVWIPNNEVLKRAGVPDTPEAARTYLHSIVG 82 (557)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccccCceeecCCHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 566789999999999999999999999999999999877666666665655432111 012333444444444445
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC-CCcccccCC-Cccccccc----CCcccc---cCC---CC---------------
Q 046556 118 WLGDQDAIQYMCREAPKAVIELENY-GLPFSRTED-GKIYQRAF----GGQSLD---FGK---GG--------------- 170 (633)
Q Consensus 118 ~~~~~~~v~~~~~~~~~~~~~l~~~-Gv~f~~~~~-g~~~~~~~----gg~~~~---~~~---g~--------------- 170 (633)
...+++.++.+++.+++.++|+.+. ++.+..... +.++.... .+..+. +.. |.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~ 162 (557)
T PRK07843 83 DVVPPERIDAYLDRGPEMLSFVLAHSPLKLCWVPGYSDYYPEAPGGRPGGRSIEPKPFDARKLGADLAGLEPPYGKVPLN 162 (557)
T ss_pred hhcCHHhhhhHHhcChHHHHHHHhcCCceEEecCCCCCcCCCCCCCCCCCceecCCCCChhhhhhHHHHhcccccccccc
Confidence 5578888999999999999998774 544432211 11110000 000000 000 00
Q ss_pred ---------------ccceeE-----------------EccCCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcE
Q 046556 171 ---------------QAYRCA-----------------CAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTC 218 (633)
Q Consensus 171 ---------------~~~r~~-----------------~~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v 218 (633)
..++.. ......+..+...|.+.+++.|+++++++.+++|+. ++++|
T Consensus 163 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~-~~g~v 241 (557)
T PRK07843 163 MVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYV-EDGRV 241 (557)
T ss_pred ccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-eCCEE
Confidence 000000 000012456777888888889999999999999998 57899
Q ss_pred EEEEEEEcCCCeEEEEEcC-eEEEccCCcCCC------CC-------CCCCCCCCchHHHHHHHHcCCCccCcccccccc
Q 046556 219 QGVIALNMEDGTLHRFRAA-STILATGGYGRA------YF-------SATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHP 284 (633)
Q Consensus 219 ~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~~~------~~-------~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p 284 (633)
+||++.. +++...|.|+ .|||||||+..+ |. .+.+++.+||||+.|++++||.+.+|++.|++|
T Consensus 242 ~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~aGA~l~~m~~~~~~p 319 (557)
T PRK07843 242 TGVHAAE--SGEPQLIRARRGVILASGGFEHNEQMRAKYQRAPIGTEWTVGAKANTGDGILAGEKLGAALDLMDDAWWGP 319 (557)
T ss_pred EEEEEEe--CCcEEEEEeceeEEEccCCcCcCHHHHHHhcCCcccCcccCCCCCCCcHHHHHHHHcCCCccCchhhccCC
Confidence 9998853 5667789996 699999999872 32 134567899999999999999999999999988
Q ss_pred ccccCCcce-eeeccccCCCcEEECCCCCccccccCCcccc---cc---------------chhHHhHHHHHHHHhcCCC
Q 046556 285 TGIYGAGCL-LLKVGSRGEGGILRNSEGERFMERYAPTAKD---LA---------------SRDVVSRSMTMEIREGRGV 345 (633)
Q Consensus 285 ~~~~~~~~~-~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~---l~---------------~r~~~~~~i~~e~~~g~g~ 345 (633)
+...+.... .+.+. ...++++||.+|+||++|+.+...- +. ..-++...+..... ..++
T Consensus 320 ~~~~~~~~~~~~~~~-~~~g~i~VN~~G~RF~nE~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~I~D~~~~~~~~-~~~~ 397 (557)
T PRK07843 320 TIPLPGGPWFALSER-NLPGSIIVNMSGKRFMNESAPYVEAVHHMYGGEYGQGPGPGENIPAWLVFDQRYRDRYL-FAGL 397 (557)
T ss_pred ccccCCCcchhhhhh-ccCCeEEECCCCCcccCCCCcHHHHHHHHHhhccccccCCCCCceEEEEECchHHhhcC-cCcC
Confidence 653322211 10111 1256899999999999986542100 00 00011111110000 0000
Q ss_pred C-----C----CCCeEEE--------ecCCCChhHHHHHhHHHHHHHHHHcCCCCC------------------------
Q 046556 346 G-----P----LKDHIYL--------HLNHLPPDVLKERLPGISETAAIFAGVDVT------------------------ 384 (633)
Q Consensus 346 ~-----~----~~~~v~~--------d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~------------------------ 384 (633)
. + ..+.++. +..+++++.|++++.+||+.|. .|.|+.
T Consensus 398 ~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~aTV~~yN~~~~--~G~D~~Fgr~~~~~~~~~~~~~~~~~~~l~ 475 (557)
T PRK07843 398 QPRQPIPSRWLESGVIVKADTLAELAAKIGVPADALTATVQRFNGFAR--SGVDEDFHRGESAYDRYYGDPTNKPNPNLG 475 (557)
T ss_pred CCCCCCcHHHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHhh--cCCCcccCCCCcccccccCCCCCCCCcccc
Confidence 0 0 0011111 2246788899999999999986 555532
Q ss_pred ---CCC---eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCC-hhhHHHHHHHHHHHH
Q 046556 385 ---KEP---IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLG-ANSLLDIVVFGRACA 457 (633)
Q Consensus 385 ---~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlg-g~~l~~a~~~G~~Ag 457 (633)
+.| +++.|..+.|+||+.||.++|||+. ++++|||||||||++ ++++|.+|++ |+++++|++|||+||
T Consensus 476 ~i~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~----~g~pIpGLYAaG~~~-gg~~g~~Y~~~G~~~~~a~~~GriAg 550 (557)
T PRK07843 476 ELSHAPFYAAKMVPGDLGTKGGLRTDVRGRVLRD----DGSVIEGLYAAGNVS-APVMGHTYAGPGATIGPAMTFGYLAA 550 (557)
T ss_pred cccCCCeEEEEEecccceeCCCceECCCceEECC----CCCCcCCceeccccc-cccccCCcCccccchhhHHHHHHHHH
Confidence 122 4677899999999999999999987 458999999999997 6899999998 999999999999999
Q ss_pred HHHHH
Q 046556 458 NRVAE 462 (633)
Q Consensus 458 ~~aa~ 462 (633)
++|++
T Consensus 551 ~~aa~ 555 (557)
T PRK07843 551 LDIAA 555 (557)
T ss_pred HHHhh
Confidence 99975
No 52
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=1.3e-40 Score=370.43 Aligned_cols=416 Identities=20% Similarity=0.232 Sum_probs=278.5
Q ss_pred CcccccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCC-----CCcCCHHHHHHHHHh
Q 046556 40 GYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN-----MTEDDWRWHMYDTVK 114 (633)
Q Consensus 40 ~~~~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~-----~~~d~~~~~~~d~~~ 114 (633)
.++.|+.++||||||+|++|++||+.|+++|++|+||||....+|.+..+.|+++..... ...|+++.++..+..
T Consensus 9 ~~~~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~s~g~~~~~~~~~q~~~g~~ds~e~~~~~~~~ 88 (578)
T PRK12843 9 SPERWDAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTATSAGTTWIPGTRHGLAVGPDDSLEAARTYLDA 88 (578)
T ss_pred CCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccccCceeecCCchHhhhccccccHHHHHHHHHH
Confidence 355678899999999999999999999999999999999877777777776666543211 124667666555555
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHH-CCCcccccCC-CcccccccCC----ccc------------------------
Q 046556 115 GSDWLGDQDAIQYMCREAPKAVIELEN-YGLPFSRTED-GKIYQRAFGG----QSL------------------------ 164 (633)
Q Consensus 115 ~~~~~~~~~~v~~~~~~~~~~~~~l~~-~Gv~f~~~~~-g~~~~~~~gg----~~~------------------------ 164 (633)
......++++++.+++++++.++||++ .|++|..... ..+.....++ ...
T Consensus 89 ~~~~~~d~~lv~~~~~~s~e~i~wl~~~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (578)
T PRK12843 89 LVGDRSPEELRDAFLASGPRAIAFLEANSEVKFRAYASHPDYESDLPGATLRGRALEPLPFDGRKLGADFALIRPPIPEF 168 (578)
T ss_pred hhCCCCcHHHHHHHHhccHHHHHHHHHcCCceeeeCCCCCCCCCCCCCCCCCCCcccCCCCChhhhhhHHHHhccccccc
Confidence 555567999999999999999999986 7988843210 0000000000 000
Q ss_pred ccCCCCcccee------------------------------E-EccC--CchHHHHHHHHHHHHhCCCEEEEEEEEEEEE
Q 046556 165 DFGKGGQAYRC------------------------------A-CAAD--RTGHALLHTLYGQAMKHNTQFFVEYFALDLI 211 (633)
Q Consensus 165 ~~~~g~~~~r~------------------------------~-~~~~--~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~ 211 (633)
.+..+....+. . .... ..|..++..|.+.+++.|+++++++.+++|+
T Consensus 169 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li 248 (578)
T PRK12843 169 TVLGGMMVDRTDVGHLLALTKSWRAFRHAVRLLARYARDRISYARGTRLVMGNALIGRLLYSLRARGVRILTQTDVESLE 248 (578)
T ss_pred cccccccccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 00000000000 0 0000 1367888999999999999999999999999
Q ss_pred EccCCcEEEEEEEEcCCCeEEEEEc-CeEEEccCCcCCC------------CCCCCCCCCCchHHHHHHHHcCCCccCcc
Q 046556 212 MNSDGTCQGVIALNMEDGTLHRFRA-ASTILATGGYGRA------------YFSATSAHTCTGDGNAMVSRAGLPLEDLE 278 (633)
Q Consensus 212 ~d~~g~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~~------------~~~~~~~~~~tGdg~~~a~~aGa~l~~~e 278 (633)
. ++++|+||++. .+|+...|.| +.|||||||++++ +..+++++.+||||+.|++++||.+.++.
T Consensus 249 ~-~~g~V~GV~~~--~~g~~~~i~A~~~VVlAtGg~~~n~em~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~~~~~~ 325 (578)
T PRK12843 249 T-DHGRVIGATVV--QGGVRRRIRARGGVVLATGGFNRHPQLRRELLPAAVARYSPGAPGHTGAAIDLALDAGARYGRGL 325 (578)
T ss_pred e-eCCEEEEEEEe--cCCeEEEEEccceEEECCCCcccCHHHHHHhCCCCcccccCCCCCCCcHHHHHHHHhCCCccccC
Confidence 8 57999999885 3666667887 6899999999985 33455677899999999999999987653
Q ss_pred cc--ccccccccCC--c--ceeeecc--ccC-CCcEEECCCCCccccccCCccc---cc----------cchhHHhHHHH
Q 046556 279 FV--QFHPTGIYGA--G--CLLLKVG--SRG-EGGILRNSEGERFMERYAPTAK---DL----------ASRDVVSRSMT 336 (633)
Q Consensus 279 ~~--~~~p~~~~~~--~--~~~~~~~--~~g-~g~~~vn~~G~rf~~~~~~~~~---~l----------~~r~~~~~~i~ 336 (633)
.. .+.|....+. + ... ... .++ .++++||.+|+||++|..+... .+ ...-++...+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~I~VN~~GkRF~nE~~~~~~~~~~~~~~~~~~~~~~~~~I~D~~~~ 404 (578)
T PRK12843 326 LSNAFWAPVSVRRRADGSTAVF-PHFYLDRGKPGTIAVNQQGRRFVNESTSYHLFGTAMFAAGKTSPGIPAYLITDAEFL 404 (578)
T ss_pred cccceecccccccCCCCccccc-cchhhhccCCCeEEECCCCCccccCCccHHHHHHHHHhhccCCCCccEEEEEChHHH
Confidence 21 1223221110 0 000 000 112 4679999999999997543210 00 00001111111
Q ss_pred HHHHhc------CCCCC--CCCeEE-E-------ecCCCChhHHHHHhHHHHHHHHHHcCCCCC----------------
Q 046556 337 MEIREG------RGVGP--LKDHIY-L-------HLNHLPPDVLKERLPGISETAAIFAGVDVT---------------- 384 (633)
Q Consensus 337 ~e~~~g------~g~~~--~~~~v~-~-------d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~---------------- 384 (633)
+....+ ..... ..+.++ . +..+++++.|++++.+||+.|. .|.|+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~--~G~D~dFgr~~~~~~~~~~~~~ 482 (578)
T PRK12843 405 RKYGLGMVRPGGRGLAPFLRDGYLTVASTLDELAPKLGIDPAALAATVQRHNQYAR--TGIDPDFGRGATAYQRMNGDAM 482 (578)
T ss_pred hhcCcccCCCCCcCcHhHhhcCceeecCCHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCCcccCCCcchhhcccCCcc
Confidence 110000 00000 001111 1 2246788899999999999986 455532
Q ss_pred -----------CCC---eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCC-hhhHHHH
Q 046556 385 -----------KEP---IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLG-ANSLLDI 449 (633)
Q Consensus 385 -----------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlg-g~~l~~a 449 (633)
+.| +++.|..+.|+||+.||+++|||+. ++++||||||||+++ ++++|.+|++ |++++.|
T Consensus 483 ~~~~~~l~pi~~~PfYA~~~~p~~~~T~GGl~in~~~qVld~----dg~pIpGLYAaG~~~-gg~~g~~y~~~G~~lg~a 557 (578)
T PRK12843 483 IGPNPNLGPIETAPFYAVRLYPGDIGAATGLVTDASARVLNA----DGQPISGLYACGNDM-ASIMGGTYPGPGITLGPA 557 (578)
T ss_pred cCCCCcccccCCCCeEEEEecCCccccCCCccCCCCceEECC----CCCCcCCceeccccc-cccccCCCCCcccchHHH
Confidence 122 5678899999999999999999987 458999999999998 6899999975 8899999
Q ss_pred HHHHHHHHHHHHHHhCC
Q 046556 450 VVFGRACANRVAEIQRP 466 (633)
Q Consensus 450 ~~~G~~Ag~~aa~~~~~ 466 (633)
++|||+||++|+++.+.
T Consensus 558 ~~fGriAg~~aa~~~~~ 574 (578)
T PRK12843 558 IVFAYLAARHAAKRTLA 574 (578)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 99999999999987654
No 53
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=100.00 E-value=3e-39 Score=359.96 Aligned_cols=412 Identities=21% Similarity=0.235 Sum_probs=269.2
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCC-----CCcCCHHHHHHHHHhcCCC
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN-----MTEDDWRWHMYDTVKGSDW 118 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~-----~~~d~~~~~~~d~~~~~~~ 118 (633)
.+.++||||||+|+||++||++|+++|++|+||||....+|.+..+.|.+...... ...++.+.+...+.+...+
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 85 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAFSGGVLWIPGNPHAREAGVADSREAARTYLKHETGA 85 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccceeCcEeccCCChHHHhcCcchhHHHHHHHHHHhcCC
Confidence 34679999999999999999999999999999999887766666654433322111 1245566665555555567
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-CCCcccccCCCcccccccCCc----cc---ccC--------------------CCC
Q 046556 119 LGDQDAIQYMCREAPKAVIELEN-YGLPFSRTEDGKIYQRAFGGQ----SL---DFG--------------------KGG 170 (633)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~~~l~~-~Gv~f~~~~~g~~~~~~~gg~----~~---~~~--------------------~g~ 170 (633)
..++++++.+++++.+.++||++ .|+.|.......+.....++. .. ++. .|.
T Consensus 86 ~~~~~~~~~~~~~~~~~i~wl~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~G~ 165 (574)
T PRK12842 86 FFDAAAVEAFLDNGPEMVEFFERETEVKFVPTLYPDYHPDAPGGVDIGRSILAAPYDIRGLGKDMARLRPPLKTITFIGM 165 (574)
T ss_pred CCCHHHHHHHHhccHHHHHHHHhCCCCceeeCCCCCCCCCCCCccCCCccccCCCCChhhhhhhHHhhcCCcccccccce
Confidence 78999999999999999999986 688885321100000000100 00 000 000
Q ss_pred cc----------c-----ee---------E---------Ecc--CCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccC
Q 046556 171 QA----------Y-----RC---------A---------CAA--DRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSD 215 (633)
Q Consensus 171 ~~----------~-----r~---------~---------~~~--~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~ 215 (633)
.. + +. . ... -..|..+...|.+.+++.|++|++++.|++|+. ++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~-~~ 244 (574)
T PRK12842 166 MFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTGTPARELLT-EG 244 (574)
T ss_pred ecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeCCEEEEEEe-eC
Confidence 00 0 00 0 000 014567888898889999999999999999998 57
Q ss_pred CcEEEEEEEEcCCCeEEEEEcC-eEEEccCCcCC-------CCCC--------CCCCCCCchHHHHHHHHcCCCccCcc-
Q 046556 216 GTCQGVIALNMEDGTLHRFRAA-STILATGGYGR-------AYFS--------ATSAHTCTGDGNAMVSRAGLPLEDLE- 278 (633)
Q Consensus 216 g~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~~-------~~~~--------~~~~~~~tGdg~~~a~~aGa~l~~~e- 278 (633)
++|+||++.+ .++ ...+.++ .||+|||+++. .+.. ++++..+||||+.||+++||.+.++.
T Consensus 245 g~V~GV~~~~-~~~-~~~i~a~k~VVlAtGg~~~n~~~~~~~~~~~~~~~~~~~~~~~~~tGdG~~ma~~~Ga~l~~~~~ 322 (574)
T PRK12842 245 GRVVGARVID-AGG-ERRITARRGVVLACGGFSHDLARIARAYPHLARGGEHLSPVPAGNTGDGIRLAEAVGGAVDIRFP 322 (574)
T ss_pred CEEEEEEEEc-CCc-eEEEEeCCEEEEcCCCccchHHHHHHhcccCcCCcccccCCCCCCCcHHHHHHHHhCCCcccCCc
Confidence 8999998865 334 3457774 79999999983 2221 34567899999999999999986421
Q ss_pred -ccccccccccC--Ccce--ee-eccccCCCcEEECCCCCccccccCCcccccc----------c----hhHHhHHHHHH
Q 046556 279 -FVQFHPTGIYG--AGCL--LL-KVGSRGEGGILRNSEGERFMERYAPTAKDLA----------S----RDVVSRSMTME 338 (633)
Q Consensus 279 -~~~~~p~~~~~--~~~~--~~-~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~----------~----r~~~~~~i~~e 338 (633)
...++|....+ .+.. .+ .......+.++||.+|+||++|..+.. .+. + .-++...+...
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~Vn~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~~~~~I~D~~~~~~ 401 (574)
T PRK12842 323 DAAAWMPVSKVPLGGGRTGVFPHLLDRYKPGVIGVLRNGKRFTNESNSYH-DVGAAMIRACEGQKETAMWLICDRATLRK 401 (574)
T ss_pred ccccccccccccCCCCccccccccccccCCceEEECCCCCCccCCCCcHh-HHHHHHHHhcccCCCccEEEEEcHHHHhh
Confidence 11122221100 0000 00 000112457999999999999865431 100 0 01111111110
Q ss_pred HHhc----CCCCC----CCCeEEE--------ecCCCChhHHHHHhHHHHHHHHHHcCCCCC------------------
Q 046556 339 IREG----RGVGP----LKDHIYL--------HLNHLPPDVLKERLPGISETAAIFAGVDVT------------------ 384 (633)
Q Consensus 339 ~~~g----~g~~~----~~~~v~~--------d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~------------------ 384 (633)
...+ ..... ..+.++. +..+++++.|++++.+||+.|. .|.|+.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~--~G~D~~Fgr~~~~~~~~~~~~~~~ 479 (574)
T PRK12842 402 YGLGYAKPAPMPVGPLLRNGYLIKGDTLAELAGKAGIDAAGLEATVRRYNEGAV--KGIDPAFGRGSTSFNRYLGDPDHK 479 (574)
T ss_pred cCcccCCCCCCChHHHHhcCcEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCCcccCCCcchhhhhcCCcccC
Confidence 0000 00000 0011111 2246788999999999999986 455432
Q ss_pred ---------CCC---eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCC-hhhHHHHHH
Q 046556 385 ---------KEP---IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLG-ANSLLDIVV 451 (633)
Q Consensus 385 ---------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlg-g~~l~~a~~ 451 (633)
+.| +++.|..+.|+||++||+++|||+. ++++||||||||+++ ++++|.+|++ |++++.|++
T Consensus 480 ~~~~l~~i~~~PfYA~~~~~~~~~T~GGl~id~~~qVld~----~g~pIpGLYAaG~~~-gg~~g~~y~~~G~~lg~a~~ 554 (574)
T PRK12842 480 PNPCVAPIGSGPFYAVKVIMGDLGTFDGLRTDVTGEVLDA----DGTPIAGLYAVGNDR-ASIMGGNYPGAGITLGPIMT 554 (574)
T ss_pred CCcccccCCCCCEEEEEecccccccCCCcCCCCCceEECC----CCCCcCCceeccccc-ccCccCCCCCCcccHHHHHH
Confidence 122 5678899999999999999999987 458999999999998 6899999987 999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 046556 452 FGRACANRVAEIQRP 466 (633)
Q Consensus 452 ~G~~Ag~~aa~~~~~ 466 (633)
|||+||++|++.++.
T Consensus 555 fGriAg~~aa~~~~~ 569 (574)
T PRK12842 555 FGYITGRHLAGVAGG 569 (574)
T ss_pred HHHHHHHHHHhhhcc
Confidence 999999999987754
No 54
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=100.00 E-value=2.2e-38 Score=352.85 Aligned_cols=412 Identities=24% Similarity=0.283 Sum_probs=270.5
Q ss_pred cccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCC-----CCcCCHHHHHHHHHhcCC
Q 046556 43 IVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN-----MTEDDWRWHMYDTVKGSD 117 (633)
Q Consensus 43 ~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~-----~~~d~~~~~~~d~~~~~~ 117 (633)
.++.++||||||+|++|++||+.|+++|++|+||||....+|.+..+.|.++..... ...++.+..+..+.....
T Consensus 8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 87 (581)
T PRK06134 8 PPDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRHELG 87 (581)
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccccCceeecCccHHhhhccccchHHHHHHHHHHHhC
Confidence 467789999999999999999999999999999999866666655554444432111 113455555544444445
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-CCCcccccCC-Cccc----ccccCCcccc---cC--------------------C
Q 046556 118 WLGDQDAIQYMCREAPKAVIELEN-YGLPFSRTED-GKIY----QRAFGGQSLD---FG--------------------K 168 (633)
Q Consensus 118 ~~~~~~~v~~~~~~~~~~~~~l~~-~Gv~f~~~~~-g~~~----~~~~gg~~~~---~~--------------------~ 168 (633)
...++++++.+++++.+.++||++ .|++|..... ..+. ....++.+.. +. .
T Consensus 88 ~~~~~~l~~~~~~~s~~~~~wl~~~~gv~~~~~~~~~d~~~~~~~~~~ggr~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 167 (581)
T PRK06134 88 ARYDAARIDAFLEAGPHMVAFFERHTALRFADGNAIPDYHGDTPGAATGGRSLIAAPFDGRELGALLERLRKPLRETSFM 167 (581)
T ss_pred cCCCHHHHHHHHhccHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCCCCCeeccCCCChhhhhHHHHHhcccccccccc
Confidence 667999999999999999999987 5888843210 0000 0001111110 00 0
Q ss_pred CCcc---------------c-----------e-----eEE---ccCCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEcc
Q 046556 169 GGQA---------------Y-----------R-----CAC---AADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNS 214 (633)
Q Consensus 169 g~~~---------------~-----------r-----~~~---~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~ 214 (633)
+... . | ..+ .....|..++..|.+.+++.|++|+++++|++|+. +
T Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~-~ 246 (581)
T PRK06134 168 GMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWESAPARELLR-E 246 (581)
T ss_pred ccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-e
Confidence 0000 0 0 000 00123567888999999999999999999999998 5
Q ss_pred CCcEEEEEEEEcCCCeEEEEEc-CeEEEccCCcCCC-------CCC--------CCCCCCCchHHHHHHHHcCCCccC-c
Q 046556 215 DGTCQGVIALNMEDGTLHRFRA-ASTILATGGYGRA-------YFS--------ATSAHTCTGDGNAMVSRAGLPLED-L 277 (633)
Q Consensus 215 ~g~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~~-------~~~--------~~~~~~~tGdg~~~a~~aGa~l~~-~ 277 (633)
+++|+||.+.+ +++...++| +.||||||+|+++ +.. +.+++.+||||+.|++++||.+.. +
T Consensus 247 ~g~v~GV~~~~--~~~~~~i~a~k~VVlAtGg~~~n~~~~~~~~p~~~~~~~~~~~~~~~~tGDGi~ma~~~GA~~~~~~ 324 (581)
T PRK06134 247 DGRVAGAVVET--PGGLQEIRARKGVVLAAGGFPHDPARRAALFPRAPTGHEHLSLPPPGNSGDGLRLGESAGGVVATDL 324 (581)
T ss_pred CCEEEEEEEEE--CCcEEEEEeCCEEEEcCCCcccCHHHHHHhcCCCCCCCCccccCCCCCCChHHHHHHHhCCCccCCC
Confidence 78999998864 344557889 8999999999862 211 234578999999999999999863 3
Q ss_pred -cccccccccccCC--cce--eeeccccC-CCcEEECCCCCccccccCCcccccc--------------chhHHhHHHHH
Q 046556 278 -EFVQFHPTGIYGA--GCL--LLKVGSRG-EGGILRNSEGERFMERYAPTAKDLA--------------SRDVVSRSMTM 337 (633)
Q Consensus 278 -e~~~~~p~~~~~~--~~~--~~~~~~~g-~g~~~vn~~G~rf~~~~~~~~~~l~--------------~r~~~~~~i~~ 337 (633)
.+.+++|+...+. +.. .+....++ .+.++||.+|+||++|..+.. +.. ...++...+..
T Consensus 325 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~i~VN~~G~RF~nE~~~~~-~~~~~~~~~~~~~~~~~~~~I~D~~~~~ 403 (581)
T PRK06134 325 ASPVAWAPVSLVPHADGSVGHFPHIIERGKPGLIGVLANGKRFVNEADSYH-DYVAAMFAATPPGQPVRSWLICDHRFLR 403 (581)
T ss_pred CcccccccccccCCCCCcccccccccccCCCCeEEECCCCCcccCCCcchh-hHHHHHHHhcCCCCCccEEEEECHHHHh
Confidence 3567777654221 100 00000122 467999999999999864321 000 00011111110
Q ss_pred HHHhcC--CC-CC-----CCCeEE-E-------ecCCCChhHHHHHhHHHHHHHHHHcCCCCC-----------------
Q 046556 338 EIREGR--GV-GP-----LKDHIY-L-------HLNHLPPDVLKERLPGISETAAIFAGVDVT----------------- 384 (633)
Q Consensus 338 e~~~g~--g~-~~-----~~~~v~-~-------d~~~~~~~~l~~~~~~~~~~~~~~~G~d~~----------------- 384 (633)
....+. .. .. ..+.++ . ...+++++.|++++.+||+.|. .|.|+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~g~~~kadTleELA~~~gid~~~L~~Tv~~yN~~~~--~G~D~dFgr~~~~~~~~~~~~~~ 481 (581)
T PRK06134 404 RYGLGHIRPAPLPLGPYVRSGYLKRGASLEELARACGIDPDGLEATVARYNRHAR--NGQDPDFGRGSTPYNRKQGDPAH 481 (581)
T ss_pred hcCccccCCCCCChHHHhhCCCEEecCCHHHHHHHcCCCHHHHHHHHHHHHHHHh--cCCCcccCCCCchhhcccCCccc
Confidence 000000 00 00 001111 1 1246788899999999999986 555432
Q ss_pred -----------CCC---eeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCC-CChhhHHHH
Q 046556 385 -----------KEP---IPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANR-LGANSLLDI 449 (633)
Q Consensus 385 -----------~~~---i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~r-lgg~~l~~a 449 (633)
+.| +++.|..+.|+||+.||+++|||+. ++++||||||||+++ ++++|.+| .+|+++++|
T Consensus 482 ~~~~~~l~pi~~gPfYA~~~~~~~~~T~GGl~id~~~qVld~----~g~pIpGLYAaG~~~-gg~~g~~y~~~G~~lg~a 556 (581)
T PRK06134 482 GGPNPCVAPIEHGPFYAVKVLPGCLGTFAGLKTDADARVLDQ----AGQPIPGLYAAGNDM-ASVMGGFYPSGGITLGPA 556 (581)
T ss_pred CCCCcccCcCCCCCeEEEEeeccccccCCCccCCCCCceECC----CCCCcCcceeccccc-cccccCCcCCcchhHHHH
Confidence 122 4677899999999999999999987 458999999999997 57777665 578999999
Q ss_pred HHHHHHHHHHHHHHhC
Q 046556 450 VVFGRACANRVAEIQR 465 (633)
Q Consensus 450 ~~~G~~Ag~~aa~~~~ 465 (633)
++|||+||++|++...
T Consensus 557 ~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 557 LTFGYIAGRHIAGASG 572 (581)
T ss_pred HHHHHHHHHHHhhcCC
Confidence 9999999999987553
No 55
>PF02910 Succ_DH_flav_C: Fumarate reductase flavoprotein C-term; InterPro: IPR004112 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AEF_A 3AE9_A 3AE5_A 3AEA_A 3SFD_A 3AE7_A 3AEB_A 3AE8_A 1ZP0_A 3AE6_A ....
Probab=99.97 E-value=4.2e-32 Score=240.84 Aligned_cols=128 Identities=39% Similarity=0.706 Sum_probs=112.1
Q ss_pred HHHHHHHhhccceEeeCHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhCcCCccc
Q 046556 501 RLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDLIETIELENLLINACITMHSAEARKESRGA 580 (633)
Q Consensus 501 ~~~l~~~m~~~~~~~r~~~~l~~~l~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~e~~~~l~~a~~~~~~al~R~ESRG~ 580 (633)
+++||++||+++||+|++++|+.|+++|++|++++.++.+.+....+|++|..++|+.||+++|++|+.|||+|+||||+
T Consensus 1 r~~Lq~~M~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~el~n~l~~a~~i~~aAl~R~ESRG~ 80 (129)
T PF02910_consen 1 REELQEIMWEYAGIVRNEEGLEEALEKLEELREELKNIKVPDKGRRFNHELMEALELRNMLLVAELIAKAALARKESRGA 80 (129)
T ss_dssp HHHHHHHHHHHSSSSBEHHHHHHHHHHHHHHHHHHTTBE-SCHCSTTBHHHHHHHHHHHHHHHHHHHHHHHHHS-SEBTT
T ss_pred CHHHHHHHHhCCCEEEcHHHHHHHHHHHHHHHHHHhcCeecCcccccchhHHHHHHHHhHHHHHHHHHHHHHhcccCccc
Confidence 57899999999999999999999999999999999989888887888999999999999999999999999999999999
Q ss_pred cccCCCCCCCcccccceEEEEeeCC-eeEEeeeeccccccCCcccccCCCCCCC
Q 046556 581 HAREDFTKRDDENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 633 (633)
Q Consensus 581 h~R~D~P~~d~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (633)
|||+|||++||++|++++++.++++ ++.++++||+++.+ .|+|+.|.|
T Consensus 81 H~R~D~P~~~d~~~~~~~~~~~~~~~~~~~~~~pv~~~~~-----~~~p~~r~y 129 (129)
T PF02910_consen 81 HYREDYPERDDENWLKHIIVRLDGGGEMRISYEPVPFTDI-----KIPPKERSY 129 (129)
T ss_dssp BEBTTSSSCETTTCSEEEEEEEETTTEEEEEEEE--GSCS-----SS-S---SS
T ss_pred chhccccccccccccEEEEEEEcCCCceEEEEecCCCccC-----CCCCccCCC
Confidence 9999999999999999999988854 59999999987643 489999998
No 56
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=240.78 Aligned_cols=356 Identities=19% Similarity=0.239 Sum_probs=209.5
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
..+||+|||||+|||+||+.|+++|.+|+|+|+++.. |......||-.+++++.. .+..+.... -.+...+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~-GrKil~sGgGrCN~Tn~~--~~~~~ls~~------p~~~~fl 72 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKL-GRKILMSGGGRCNFTNSE--APDEFLSRN------PGNGHFL 72 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccc-cceeEecCCCCccccccc--cHHHHHHhC------CCcchHH
Confidence 3589999999999999999999999999999998654 444444455545444321 133222111 1111222
Q ss_pred HH-HHHHH-HHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEE
Q 046556 126 QY-MCREA-PKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFV 203 (633)
Q Consensus 126 ~~-~~~~~-~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~ 203 (633)
+. +.+-. .+.++|++.+|+++.....|.+++. ......+++.|.+++++.||++++
T Consensus 73 ~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~----------------------sdkA~~Iv~~ll~~~~~~gV~i~~ 130 (408)
T COG2081 73 KSALARFTPEDFIDWVEGLGIALKEEDLGRMFPD----------------------SDKASPIVDALLKELEALGVTIRT 130 (408)
T ss_pred HHHHHhCCHHHHHHHHHhcCCeeEEccCceecCC----------------------ccchHHHHHHHHHHHHHcCcEEEe
Confidence 22 22222 3567889999999988777765541 123468999999999999999999
Q ss_pred EEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccccc
Q 046556 204 EYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFH 283 (633)
Q Consensus 204 ~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~ 283 (633)
+++|.++.. ++ . +..+ +..+|+ .|+|+++||||||.+. +. .++||+|+.+|...|..+....-...
T Consensus 131 ~~~v~~v~~-~~-~--~f~l-~t~~g~--~i~~d~lilAtGG~S~--P~----lGstg~gy~iA~~~G~~I~~~rpalv- 196 (408)
T COG2081 131 RSRVSSVEK-DD-S--GFRL-DTSSGE--TVKCDSLILATGGKSW--PK----LGSTGFGYPIARQFGHTITPLRPALV- 196 (408)
T ss_pred cceEEeEEe-cC-c--eEEE-EcCCCC--EEEccEEEEecCCcCC--CC----CCCCchhhHHHHHcCCccccCccccC-
Confidence 999999988 33 2 2222 336776 4999999999999872 22 27899999999999998875431111
Q ss_pred cccccCC--cceeeeccccCCCcEEECCCCCccccccCCccccccchhH--HhHHHHHHHHhcCCCCCCCCeEEEec-CC
Q 046556 284 PTGIYGA--GCLLLKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDV--VSRSMTMEIREGRGVGPLKDHIYLHL-NH 358 (633)
Q Consensus 284 p~~~~~~--~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~--~~~~i~~e~~~g~g~~~~~~~v~~d~-~~ 358 (633)
|..+..+ ..+. ......-...+.+.+|..|-.+..-...-+..-.+ ++.... . .+..+ ...+.+|+ -+
T Consensus 197 pft~~~~~~~~l~-gls~~~v~~~v~~~~g~~~~g~~LfTh~GiSGPavl~~Ss~~~-~-~~~~~----~~~i~iDllP~ 269 (408)
T COG2081 197 PFTLDESFLERLA-GLSLKSVPLSVTAGKGITFQGDLLFTHRGLSGPAVLQLSSYWR-L-LEKKG----GATLSIDLLPD 269 (408)
T ss_pred CccCCHHHHHHhc-CCcccceEEEEecCCCceeecceEEEecCCcHHHHHHHHHHHH-H-hccCC----CceEEEecCCC
Confidence 1111000 0000 00000011122333333332111000001111112 222222 2 22221 12477775 34
Q ss_pred CChhHHHHHhH------------------HHHHHHHHHcCCCCCCC-----------------Ceecc-------ccccc
Q 046556 359 LPPDVLKERLP------------------GISETAAIFAGVDVTKE-----------------PIPVL-------PTVHY 396 (633)
Q Consensus 359 ~~~~~l~~~~~------------------~~~~~~~~~~G~d~~~~-----------------~i~v~-------p~~~~ 396 (633)
.+.+.+.+.+. ++.+......|+ +.+. ..++. -.+..
T Consensus 270 ~~~~~l~~~l~~~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~~~A~V 348 (408)
T COG2081 270 VDAEELLRELRRANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPYREAEV 348 (408)
T ss_pred CCHHHHHHHHHhhChhhHHHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCcccceeEE
Confidence 55554433221 111112222455 2110 01221 24678
Q ss_pred cccCcccCC-CCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHh
Q 046556 397 NMGGIPTNH-HGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQ 464 (633)
Q Consensus 397 ~~GGi~vd~-~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~ 464 (633)
|.|||.+++ +.+.+. ...+||||+|||+. .++|. +||.++++|+++|+.||+.+++++
T Consensus 349 T~GGV~~~eid~kTme------sk~vPGLyf~GEvl--Dv~g~--tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 349 TAGGVDTKEIDSKTME------SKKVPGLYFAGEVL--DVTGW--TGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred ecCceehhhcCHHHHH------hhcCCCcEEEEEEE--EeccC--CCcHHHHHHHHHHHHHHHhhhhhc
Confidence 899998765 333333 27899999999998 88886 899999999999999999998764
No 57
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.94 E-value=2.1e-26 Score=243.15 Aligned_cols=348 Identities=20% Similarity=0.296 Sum_probs=180.5
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHHHH
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQY 127 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~ 127 (633)
|||+|||||+|||+||+.|++.|++|+|+||+... |......|+-.+++.+... ++..+. ..+..+++.++.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~-gkKil~tG~GrCN~tn~~~-~~~~~~------~~~~~~~~f~~~ 72 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRV-GKKILITGNGRCNLTNLNI-DPSEFL------SGYGRNPKFLKS 72 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS--HHHHHCGGGT-EEEETTS-SGGGEE------CS-TBTTTCTHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccc-ccceeecCCCCcccccccc-chhhHh------hhcccchHHHHH
Confidence 79999999999999999999999999999998654 3443444433333322111 110000 000112222222
Q ss_pred HHH--HHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEE
Q 046556 128 MCR--EAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEY 205 (633)
Q Consensus 128 ~~~--~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~ 205 (633)
... ...+.+++++++|+++...++|.+++. ......+++.|.+.+++.||++++++
T Consensus 73 ~l~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~----------------------s~~a~~Vv~~L~~~l~~~gv~i~~~~ 130 (409)
T PF03486_consen 73 ALKRFSPEDLIAFFEELGVPTKIEEDGRVFPK----------------------SDKASSVVDALLEELKRLGVEIHFNT 130 (409)
T ss_dssp HHHHS-HHHHHHHHHHTT--EEE-STTEEEET----------------------T--HHHHHHHHHHHHHHHT-EEE-S-
T ss_pred HHhcCCHHHHHHHHHhcCCeEEEcCCCEECCC----------------------CCcHHHHHHHHHHHHHHcCCEEEeCC
Confidence 221 124578899999999987777665542 12346889999999999999999999
Q ss_pred EEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcc--ccccc
Q 046556 206 FALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLE--FVQFH 283 (633)
Q Consensus 206 ~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e--~~~~~ 283 (633)
+|.+|.. +++.+..+.+ .+++ .+.||.|||||||.+ |+. .+++|+|+.+|.+.|..++..- .+++.
T Consensus 131 ~V~~i~~-~~~~~f~v~~---~~~~--~~~a~~vILAtGG~S--~p~----~GS~G~gy~~a~~lGh~i~~~~PaL~~l~ 198 (409)
T PF03486_consen 131 RVKSIEK-KEDGVFGVKT---KNGG--EYEADAVILATGGKS--YPK----TGSDGSGYRIAKKLGHTITPPYPALVPLK 198 (409)
T ss_dssp -EEEEEE-ETTEEEEEEE---TTTE--EEEESEEEE----SS--SGG----GT-SSHHHHHHHHTT--EEEEEEES--EE
T ss_pred Eeeeeee-cCCceeEeec---cCcc--cccCCEEEEecCCCC--ccc----cCCCcHHHHHHHHCCCcEecCCCccCCee
Confidence 9999998 5677777766 3444 489999999999987 322 2679999999999998876432 11110
Q ss_pred cccccCCcceeeeccccC---CCc-EEECCCCCccccccCCcc---ccccc--hhHHhHHHHHHHHhcCCCCCCCCeEEE
Q 046556 284 PTGIYGAGCLLLKVGSRG---EGG-ILRNSEGERFMERYAPTA---KDLAS--RDVVSRSMTMEIREGRGVGPLKDHIYL 354 (633)
Q Consensus 284 p~~~~~~~~~~~~~~~~g---~g~-~~vn~~G~rf~~~~~~~~---~~l~~--r~~~~~~i~~e~~~g~g~~~~~~~v~~ 354 (633)
..... +. .....| ... .++ +|+....+..+.. .-+.. --.+|+.+...+.+..+ ..+.+
T Consensus 199 ---~~~~~-~~-~~~l~Gv~~~~~~~~~--~~~~~~~~~GellfT~~GiSGp~il~lS~~~~~~l~~~~~-----~~i~i 266 (409)
T PF03486_consen 199 ---CDEPW-LF-FKELSGVRLKAVISLL--DGKKKASETGELLFTHYGISGPAILQLSRFIARALNKKKK-----VEISI 266 (409)
T ss_dssp -----HHH-HH-TGGGTT-EEEEEEEEE---ECTCEEEEEEEEE-SSEEESHHHHHHTTTHHHHHH--TT-----EEEEE
T ss_pred ---ecchh-hh-hhhhCCCceeeEEEEe--ccCCccceeeeEEEECCccchHHHHHHHHHHHHHHHhcCC-----ceEEE
Confidence 00000 00 000111 111 112 2222111110000 00111 11234444444444333 25777
Q ss_pred ecC-CCChhHHHHHhH---------------------HHHHHHHHHcCC-CCCCC-------------------Ceecc-
Q 046556 355 HLN-HLPPDVLKERLP---------------------GISETAAIFAGV-DVTKE-------------------PIPVL- 391 (633)
Q Consensus 355 d~~-~~~~~~l~~~~~---------------------~~~~~~~~~~G~-d~~~~-------------------~i~v~- 391 (633)
|+- ..+.+.+.+.+. ++........++ ++.+. ++++.
T Consensus 267 d~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk~~~~~v~g 346 (409)
T PF03486_consen 267 DFLPDLSEEELEELLQERKEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLKRFPFTVTG 346 (409)
T ss_dssp ESSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHHCEEEEESE
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHHhCceeecc
Confidence 863 555555554432 111222223566 55321 12222
Q ss_pred ----ccccccccCcccCCC-CceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHH
Q 046556 392 ----PTVHYNMGGIPTNHH-GEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANR 459 (633)
Q Consensus 392 ----p~~~~~~GGi~vd~~-~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~ 459 (633)
..+..|.|||.+++- -+.+. ...+||||+|||+. .++|. .||.+|.+||.+|++||++
T Consensus 347 ~~~~~~A~VT~GGV~~~eid~~Tme------Sk~~~gLyf~GEvL--DvdG~--~GGYNLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 347 TGGFDKAQVTAGGVDLKEIDPKTME------SKLVPGLYFAGEVL--DVDGP--CGGYNLQWAWSSGYLAGKY 409 (409)
T ss_dssp E--TTT-SEEEEEE-GGGB-TTT-B------BSSSTTEEE-GGGB--SEEE---TTTHHHHHHHHHHHHHHH-
T ss_pred cCCCceEEEECCCcCHHHCCHhhhc------ccCCCCeEEEEEEE--EeccC--cCchhHhHHHHHHHHhhCC
Confidence 247888999987652 22222 37799999999998 78875 7999999999999999975
No 58
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=99.94 E-value=1.7e-25 Score=216.82 Aligned_cols=405 Identities=23% Similarity=0.260 Sum_probs=236.2
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC--CCCCcccccccceeeecCCC-----CcCCHHHHHHHHHhcCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF--PTRSHTVAAQGGINAALGNM-----TEDDWRWHMYDTVKGSDW 118 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~--~~~g~t~~~~Gg~~~~~~~~-----~~d~~~~~~~d~~~~~~~ 118 (633)
.++||||||+|.|||.||.+++++|.+|+|+|+.. ..+|...++.||....-+.. ..|+.+...+|++....+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~F 83 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAAF 83 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhccccc
Confidence 36899999999999999999999999999999843 34566777778776543321 134444445555543332
Q ss_pred C-CCHHHHHHHHHH-----HHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHH
Q 046556 119 L-GDQDAIQYMCRE-----APKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYG 192 (633)
Q Consensus 119 ~-~~~~~v~~~~~~-----~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~ 192 (633)
- ...-+.+.+++. +.+...||.+.|+.|...-.. .+-|-....+.|++++|-+ ..-.+|..++..+.+
T Consensus 84 DRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGW-----AERGG~~A~ghGNSVPRFH-iTWGTGPgvl~pFvr 157 (552)
T COG3573 84 DRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGW-----AERGGSDAQGHGNSVPRFH-ITWGTGPGVLEPFVR 157 (552)
T ss_pred CCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccc-----hhhCCcccCCCCCCCcceE-EeecCCcchhhHHHH
Confidence 1 111223333332 245677899999876432110 0001111122344555532 233455555555555
Q ss_pred HHHh----CCCEEEEEEEEEEEEEccCCcEEEEEEEEc-----CCCe--------EEEEEcCeEEEccCCcCCC------
Q 046556 193 QAMK----HNTQFFVEYFALDLIMNSDGTCQGVIALNM-----EDGT--------LHRFRAASTILATGGYGRA------ 249 (633)
Q Consensus 193 ~a~~----~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~-----~~G~--------~~~i~A~~VVlAtGg~~~~------ 249 (633)
++++ .-+++.++++|..|.+ .+++|+||...-+ ..|+ .++++|.+||+++||++++
T Consensus 158 ~~re~~~~~~v~f~~RHrV~~l~~-t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIGGnhelVRr 236 (552)
T COG3573 158 RLREAQRRGRVTFRFRHRVDGLTT-TGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIGGNHELVRR 236 (552)
T ss_pred HHHHHHhCCceEEEeeeeccceEe-eCCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcCCCHHHHHh
Confidence 5443 3489999999999999 7899999965211 1111 2578999999999999864
Q ss_pred -CCC-----------CCCCCCCchHHHHHHHHcCCCccCccccccccccccCCcceeeecc---ccCCCcEEECCCCCcc
Q 046556 250 -YFS-----------ATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLLLKVG---SRGEGGILRNSEGERF 314 (633)
Q Consensus 250 -~~~-----------~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~~~~~~~~~~~~---~~g~g~~~vn~~G~rf 314 (633)
|+. +.-+....|..+.++..+|+.++|.+-++-+--++-+-....+..+ ..|+...|+|+.|+|+
T Consensus 237 nWP~eRlG~~Pe~m~~GVPaHVDGrmi~i~~~aGg~vIN~DRMWHYtEGirNwdPiWp~HgIRIlPGPSSlWlDa~G~RL 316 (552)
T COG3573 237 NWPTERLGRAPEQMLSGVPAHVDGRMIGIAVAAGGSVINPDRMWHYTEGIRNWDPIWPNHGIRILPGPSSLWLDAAGKRL 316 (552)
T ss_pred cCchhhcCCChHHHhcCCcccccchhHHHHHHhCCceeccccceehhhccccCCCcCcccceeeccCCcceeECCCCCcC
Confidence 220 1234466888999999999999998866443323322111111112 3567789999999986
Q ss_pred ccccCCcccccc------------chhHHhHHHHH-HH---------------------HhcCCCCCCCCeEEEecC--C
Q 046556 315 MERYAPTAKDLA------------SRDVVSRSMTM-EI---------------------REGRGVGPLKDHIYLHLN--H 358 (633)
Q Consensus 315 ~~~~~~~~~~l~------------~r~~~~~~i~~-e~---------------------~~g~g~~~~~~~v~~d~~--~ 358 (633)
---..|....+. ++-++.+.|.+ |. +.+.++ |..-..|+|.. -
T Consensus 317 p~P~~PGfdtlgTL~hi~~~G~~ysWFiLt~kiI~kEFaLSGsEQNPDLTGkd~rlll~Ra~k~p-PgPV~AFmdrGeDF 395 (552)
T COG3573 317 PVPLFPGFDTLGTLKHITSTGYDYSWFILTRKIIKKEFALSGSEQNPDLTGKDLRLLLRRAGKGP-PGPVQAFMDRGEDF 395 (552)
T ss_pred CCCcCCCcchhhHHHHHhhcCCCceeeeeeHHHHHHHhcccccccCCCccchhHHHHHHHhcCCC-CccHHHHHhcCcce
Confidence 432222211111 01111122111 11 112221 00000111110 0
Q ss_pred CChhHHHHHhHHHHHH-------------------------------------HHHH------------cCCCCCCCC-e
Q 046556 359 LPPDVLKERLPGISET-------------------------------------AAIF------------AGVDVTKEP-I 388 (633)
Q Consensus 359 ~~~~~l~~~~~~~~~~-------------------------------------~~~~------------~G~d~~~~~-i 388 (633)
+-.+.|++.+..+|+. +..+ .=.||...| |
T Consensus 396 vv~~~L~eLVa~MN~l~g~~~Ld~a~v~r~i~aRDrev~N~~sKDaQitairgARaylgdrl~R~akph~llDPa~GPLI 475 (552)
T COG3573 396 VVADTLRELVAGMNELTGGEPLDYATVEREIEARDREVVNKYSKDAQITAIRGARAYLGDRLTRVAKPHRLLDPANGPLI 475 (552)
T ss_pred ehhhhHHHHHHHhhccCCCCcccHHHHHHHHHhhhhhhhcccccchhhhhHHHHHHHhhhhhhhccCcccccCcccCceE
Confidence 0011111111111100 0000 113444444 2
Q ss_pred --eccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccc---cccccCCCCCChhhHHHHHHHHHHHHHHHHH
Q 046556 389 --PVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAA---CASVHGANRLGANSLLDIVVFGRACANRVAE 462 (633)
Q Consensus 389 --~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a---~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~ 462 (633)
++.-...-|.||+.+|.+++||+. +++++|||||+||++ ++|+||.+-|-|..|+.|+.+|+.||+.++.
T Consensus 476 AVrLhiLTRKtLGGl~TdL~~rVl~A----~GqPvpgLyAaGEvAGFGGGG~HGY~ALEGTFLGgCiFSGRaAGRaaa~ 550 (552)
T COG3573 476 AVRLHILTRKTLGGLETDLDARVLGA----DGQPVPGLYAAGEVAGFGGGGVHGYRALEGTFLGGCIFSGRAAGRAAAG 550 (552)
T ss_pred EEEEEeeeehhccCcccchhhhhhCC----CCCCCcchhhcchhcccCCCcccchhhhccceecceeecchhhhhhhcc
Confidence 222334567899999999999986 569999999999998 4679999999999999999999999998864
No 59
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.91 E-value=2.8e-22 Score=214.09 Aligned_cols=346 Identities=21% Similarity=0.279 Sum_probs=201.5
Q ss_pred EEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 046556 51 VVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCR 130 (633)
Q Consensus 51 lIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~ 130 (633)
+|||||+||++||+.|+++|++|+|+||....++......+|. ++..+.. ....+.... ..++..+.....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~gr-cn~tn~~--~~~~~~~~~------~~~~~~~~~~l~ 71 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGR-CNLTNSC--PTPEFVAYY------PRNGKFLRSALS 71 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCce-EEccCCC--cchhHHHhc------CCCcHHHHHHHH
Confidence 5999999999999999999999999999876544433333343 3333211 111111111 112232322222
Q ss_pred --HHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEEEEE
Q 046556 131 --EAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFAL 208 (633)
Q Consensus 131 --~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v~ 208 (633)
...+.++|+.++|+++.....+.+++ .......+...|.+.+++.|++++.++.|+
T Consensus 72 ~~~~~d~~~~~~~~Gv~~~~~~~g~~~p----------------------~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~ 129 (400)
T TIGR00275 72 RFSNKDLIDFFESLGLELKVEEDGRVFP----------------------CSDSAADVLDALLNELKELGVEILTNSKVK 129 (400)
T ss_pred hCCHHHHHHHHHHcCCeeEEecCCEeEC----------------------CCCCHHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 24567789999999887654443221 112346788899999999999999999999
Q ss_pred EEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcccccccccccc
Q 046556 209 DLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIY 288 (633)
Q Consensus 209 ~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~~ 288 (633)
++.. +++ ...+.+ +++ .+.||.||+|+|+++. + ..+++|+|+.++.++|+.+..+.- ...|....
T Consensus 130 ~i~~-~~~-~~~v~~----~~~--~i~ad~VIlAtG~~s~--p----~~gs~G~g~~la~~lG~~i~~~~P-~l~~l~~~ 194 (400)
T TIGR00275 130 SIKK-DDN-GFGVET----SGG--EYEADKVILATGGLSY--P----QLGSTGDGYEIAESLGHTIVPPVP-ALVPLTLD 194 (400)
T ss_pred EEEe-cCC-eEEEEE----CCc--EEEcCEEEECCCCccc--C----CCCCCcHHHHHHHHCCCCEecccc-eEeEEEeC
Confidence 9976 344 333433 233 3789999999999873 2 247899999999999998764321 11111111
Q ss_pred CCcceeeeccccCCCcEEECCCCCccccccCCcc---ccccchhH--HhHHHHHHHHhcCCCCCCCCeEEEecC-CCChh
Q 046556 289 GAGCLLLKVGSRGEGGILRNSEGERFMERYAPTA---KDLASRDV--VSRSMTMEIREGRGVGPLKDHIYLHLN-HLPPD 362 (633)
Q Consensus 289 ~~~~~~~~~~~~g~g~~~vn~~G~rf~~~~~~~~---~~l~~r~~--~~~~i~~e~~~g~g~~~~~~~v~~d~~-~~~~~ 362 (633)
....-. ..+++-...+.+..+|++|.++..+.. ..+....+ +++.+...+..+.+. .+.+|+. .++.+
T Consensus 195 ~~~~~~-l~Gv~~~~~~~~~~~~~~~~~~~g~llft~~gisG~~vl~~s~~~~~~~~~~~~~-----~~~id~~p~~~~~ 268 (400)
T TIGR00275 195 ESFLKE-LSGISLDGVVLSLVNGKKVLEEFGDLLFTHFGLSGPAILDLSAFAARALLKHKGV-----ELEIDLLPDLSEE 268 (400)
T ss_pred Cccccc-CCCCcCccEEEEecCCcEEEeecccEEEECCCcCHHHHHHHHHHHHHHhhcCCCc-----EEEEEcCCCCCHH
Confidence 100000 111221222333356666665422211 01111112 233333333222222 4778864 45555
Q ss_pred HHHHHhH---------------------HHHHHHHHHcCCCCCCC-------------------Ceecc-----cccccc
Q 046556 363 VLKERLP---------------------GISETAAIFAGVDVTKE-------------------PIPVL-----PTVHYN 397 (633)
Q Consensus 363 ~l~~~~~---------------------~~~~~~~~~~G~d~~~~-------------------~i~v~-----p~~~~~ 397 (633)
.+.+.+. ++........|+++.+. ++++. -.+..|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~~~g~~~~~~a~vt 348 (400)
T TIGR00275 269 ELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQLLKNWPFTVSGTRGFKEAEVT 348 (400)
T ss_pred HHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHHHhCCEEEecCcCccceeEEe
Confidence 4443221 11112222357765432 12221 246788
Q ss_pred ccCcccCCCC-ceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHH
Q 046556 398 MGGIPTNHHG-EVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACAN 458 (633)
Q Consensus 398 ~GGi~vd~~~-~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~ 458 (633)
.|||.+++-. +.+. ..-+||||+|||+. .++|. .||.+|.+||.+|++||+
T Consensus 349 ~GGv~~~ei~~~~m~------~k~~~gly~~GE~l--Dv~g~--~GGyNlq~a~~sg~~ag~ 400 (400)
T TIGR00275 349 AGGVSLKEINPKTME------SKLVPGLYFAGEVL--DVDGD--TGGYNLQWAWSSGYLAGK 400 (400)
T ss_pred cCcccchhcChhhhh------hcCCCCeEEEEEEE--ecCCC--CCchHHHHHHHHHHHhcC
Confidence 9999876532 2222 26799999999997 78875 799999999999999983
No 60
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.74 E-value=1.2e-15 Score=158.69 Aligned_cols=327 Identities=16% Similarity=0.194 Sum_probs=184.4
Q ss_pred CCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHHHHHHHHHCCCccc
Q 046556 70 GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCRE--APKAVIELENYGLPFS 147 (633)
Q Consensus 70 G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~~~Gv~f~ 147 (633)
|++|+|+||+.. -|......|+-.+++++.... ..+. . .+..+++.++..... ..+.++|+++.|+++.
T Consensus 1 g~~V~ilEkn~~-~GkKil~TG~GRCN~TN~~~~--~~~~----~--~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~ 71 (376)
T TIGR03862 1 GLEVDVFEAKPS-VGRKFLMAGKSGLNLTHSEPL--PRFI----E--RYGDAAEWLAPWLEAFDAVALQDWARGLGIETF 71 (376)
T ss_pred CCeEEEEeCCCC-ccceeEEcCCCCcccCCCCch--HHHH----H--hcCCchHHHHHHHHhCCHHHHHHHHHHCCCceE
Confidence 578999999854 456666677777766653221 1111 1 111345545444333 2467889999999998
Q ss_pred ccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcC
Q 046556 148 RTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNME 227 (633)
Q Consensus 148 ~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~ 227 (633)
..++|.+++. ......+++.|...+++.||+|++++.|+++ . ++ . .++.+ .
T Consensus 72 ~e~~grvfP~----------------------S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~-~~-~-~~v~~---~ 122 (376)
T TIGR03862 72 VGSSGRVFPV----------------------EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q-GG-T-LRFET---P 122 (376)
T ss_pred ECCCCEECCC----------------------CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE-e-CC-c-EEEEE---C
Confidence 8777776542 1234689999999999999999999999998 3 33 2 33433 2
Q ss_pred CCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCcc--ccccccccccCCccee-eeccccCCCc
Q 046556 228 DGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLE--FVQFHPTGIYGAGCLL-LKVGSRGEGG 304 (633)
Q Consensus 228 ~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e--~~~~~p~~~~~~~~~~-~~~~~~g~g~ 304 (633)
++. ..++|++|||||||.+ |+. .+.+|+|+.+|...|..++.+- .+++. ......+. ...+++-...
T Consensus 123 ~~~-~~~~a~~vIlAtGG~s--~p~----~Gs~g~gy~la~~lGh~i~~~~PaL~pl~---~~~~~~~~~~L~Gv~~~~~ 192 (376)
T TIGR03862 123 DGQ-STIEADAVVLALGGAS--WSQ----LGSDGAWQQVLDQRGVSVAPFAPANCGFL---VDWSAHFASRFAGEPLKRV 192 (376)
T ss_pred CCc-eEEecCEEEEcCCCcc--ccc----cCCCcHHHHHHHHCCCcccCCcCeeceEE---ccCchhhHhhcCCCcccce
Confidence 222 2489999999999987 222 2679999999999999887532 11111 10000000 0001111111
Q ss_pred -EEECC---CCCccccccCCccccccchh--HHhHHHHHHHHhcCCCCCCCCeEEEecC-CCChhHHHHHhHH------H
Q 046556 305 -ILRNS---EGERFMERYAPTAKDLASRD--VVSRSMTMEIREGRGVGPLKDHIYLHLN-HLPPDVLKERLPG------I 371 (633)
Q Consensus 305 -~~vn~---~G~rf~~~~~~~~~~l~~r~--~~~~~i~~e~~~g~g~~~~~~~v~~d~~-~~~~~~l~~~~~~------~ 371 (633)
+.++. .|+-....|. +..-. -+++.+...+..+. ...+.+|+. .++.+.+.+.+.. +
T Consensus 193 ~~~~~~~~~~GellFTh~G-----iSGpavl~lS~~~~~~~~~~~-----~~~i~idf~P~~~~~~l~~~l~~~~~~k~l 262 (376)
T TIGR03862 193 NATAGTQQTRGEIVITARG-----LEGGLIYALSAALREQIKAGG-----SANLFLDLLPDLSLEQVTKRLAAPRGKQSL 262 (376)
T ss_pred EEEeCCeeEeeeEEEECCC-----ccHHHHHHHHHHHHHHHhcCC-----ceEEEEECCCCCCHHHHHHHHHhhcccchH
Confidence 11111 1211111111 11111 12333322222111 123677763 3445444432211 0
Q ss_pred HHHHHHHcCCCCC-------------------------CCCeecc-----ccccccccCcccCCCCceeeecCCCCCCcc
Q 046556 372 SETAAIFAGVDVT-------------------------KEPIPVL-----PTVHYNMGGIPTNHHGEVVTIKGDDPDEVV 421 (633)
Q Consensus 372 ~~~~~~~~G~d~~-------------------------~~~i~v~-----p~~~~~~GGi~vd~~~~vl~~d~~~~~T~i 421 (633)
........|+++. .-++++. ..+..|.|||.+++-..-+ +..-+
T Consensus 263 ~~~L~~~~gi~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~v~g~~~~~~A~VT~GGV~~~EI~~~~------~Sk~~ 336 (376)
T TIGR03862 263 SNHLRKALGLDGVKRALLREVFPKAAWSQPETLAQTIKALPLPLDGTRPIDEAISTAGGVRQDALDESL------MLKAR 336 (376)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhccCHHHHHHHHHHHhCCeeeecccCCcceEEEeCCcccHHHcChhh------hcccC
Confidence 0111111222210 0112222 2467889999776532211 23679
Q ss_pred cCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHh
Q 046556 422 PGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQ 464 (633)
Q Consensus 422 pGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~ 464 (633)
||||+|||+. .++|. .||.+|.+||.+|++||++|+.++
T Consensus 337 pgLYf~GEvL--DvdG~--~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 337 PGVFCAGEML--DWEAP--TGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred CCeEEEEEEE--eeccC--CCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999997 78885 799999999999999999999875
No 61
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.71 E-value=6.7e-17 Score=172.21 Aligned_cols=36 Identities=42% Similarity=0.526 Sum_probs=33.5
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
+.+||++|||+|+||..||++|++.|.+|+|+|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 357999999999999999999999999999999974
No 62
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.60 E-value=1.5e-14 Score=144.43 Aligned_cols=144 Identities=23% Similarity=0.283 Sum_probs=101.3
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
.++||+|||||+||++||+.|++.|++|+|+||....+++.. .|+.. .+...+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~--~gg~~-------------------------~~~~~v 76 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMW--GGGML-------------------------FNKIVV 76 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccc--cCccc-------------------------cccccc
Confidence 468999999999999999999999999999999765443321 11110 000000
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEY 205 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~ 205 (633)
..+..+++.++|++|....++.+ .. .+..+...|.+++.+.|+++++++
T Consensus 77 ------~~~~~~~l~~~gv~~~~~~~g~~-----------------------~v--d~~~l~~~L~~~A~~~Gv~I~~~t 125 (257)
T PRK04176 77 ------QEEADEILDEFGIRYKEVEDGLY-----------------------VA--DSVEAAAKLAAAAIDAGAKIFNGV 125 (257)
T ss_pred ------hHHHHHHHHHCCCCceeecCcce-----------------------ec--cHHHHHHHHHHHHHHcCCEEEcCc
Confidence 11345677889998764322210 01 236788889999999999999999
Q ss_pred EEEEEEEccCCcEEEEEEEEcC------CCeEEEEEcCeEEEccCCcC
Q 046556 206 FALDLIMNSDGTCQGVIALNME------DGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 206 ~v~~L~~d~~g~v~Gv~~~~~~------~G~~~~i~A~~VVlAtGg~~ 247 (633)
.|++|..+++++|+|+++.... +.+...|+|+.||+|||+++
T Consensus 126 ~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 126 SVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred eeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 9999988444589999874311 12345799999999999776
No 63
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.60 E-value=6.4e-15 Score=160.11 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=32.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
++|||+|||||+||+.||+.|++.|.+|+|+||.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 4699999999999999999999999999999996
No 64
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.56 E-value=1.5e-14 Score=157.41 Aligned_cols=33 Identities=39% Similarity=0.573 Sum_probs=31.9
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
+|||+|||||+||++||+.|++.|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 599999999999999999999999999999985
No 65
>PLN02546 glutathione reductase
Probab=99.56 E-value=3.4e-14 Score=156.90 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=83.2
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC-CCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHH
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP-TRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~-~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
..+|||+|||+|++|+.||..|++.|++|+|+||... ..+......||.|.+.+ |.|.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~G---------------------CiPs 135 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRG---------------------CVPK 135 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcc---------------------hHHH
Confidence 3569999999999999999999999999999997210 01111122356655554 3343
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEE
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFV 203 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~ 203 (633)
.....+......++....+|+.+.... .+.+. ......+..-..+...+.+.+++.||+++.
T Consensus 136 K~l~~aa~~~~~~~~~~~~g~~~~~~~--~~d~~----------------~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~ 197 (558)
T PLN02546 136 KLLVYASKYSHEFEESRGFGWKYETEP--KHDWN----------------TLIANKNAELQRLTGIYKNILKNAGVTLIE 197 (558)
T ss_pred HHHHHHHHHHHHHHhhhhcCcccCCCC--CCCHH----------------HHHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 333333333344444455666432110 00000 000000001123344455556678999886
Q ss_pred EEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 204 EYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 204 ~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
+. ++.+ +...+ .+ +|+ .+.+|.||||||+...
T Consensus 198 G~-a~~v---d~~~V---~v----~G~--~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 198 GR-GKIV---DPHTV---DV----DGK--LYTARNILIAVGGRPF 229 (558)
T ss_pred eE-EEEc---cCCEE---EE----CCE--EEECCEEEEeCCCCCC
Confidence 53 2222 12222 22 354 4899999999997653
No 66
>PTZ00058 glutathione reductase; Provisional
Probab=99.55 E-value=1.6e-14 Score=159.45 Aligned_cols=48 Identities=25% Similarity=0.381 Sum_probs=38.6
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccce
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGI 93 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~ 93 (633)
...+|||+|||||+||++||+.|++.|++|+||||.. -|+++.+.|++
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~--~GGtCln~GCi 92 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY--LGGTCVNVGCV 92 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc--ccccccccCCC
Confidence 3467999999999999999999999999999999862 34444444433
No 67
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.7e-13 Score=134.01 Aligned_cols=187 Identities=22% Similarity=0.266 Sum_probs=109.2
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHH
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 124 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~ 124 (633)
+.+||.||||||.+||+||-+|+..|++|.++|--.+..-+++|-.||.|.+.+.. |+.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCI---------------------PKK 75 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCI---------------------PKK 75 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccc---------------------cHH
Confidence 46799999999999999999999999999999976566678888889999988743 222
Q ss_pred HHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCC--CEEE
Q 046556 125 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHN--TQFF 202 (633)
Q Consensus 125 v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~g--v~i~ 202 (633)
...-+.-..+.+....++|...... ++. + .-..+.+...+..+..+ .++.
T Consensus 76 LMHQAallG~al~da~kyGW~~~e~---~ik--------h-----------------dW~~l~~sVqnhI~s~NW~yRv~ 127 (503)
T KOG4716|consen 76 LMHQAALLGEALHDARKYGWNVDEQ---KIK--------H-----------------DWNKLVKSVQNHIKSLNWGYRVQ 127 (503)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCccc---ccc--------c-----------------cHHHHHHHHHHHhhhccceEEEE
Confidence 2222333445555566666654321 000 0 11345555555555543 2333
Q ss_pred EEEEEEEEEEccCCcEEE---EEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCC--CCCCchHHHHHH-------HHc
Q 046556 203 VEYFALDLIMNSDGTCQG---VIALNMEDGTLHRFRAASTILATGGYGRAYFSATS--AHTCTGDGNAMV-------SRA 270 (633)
Q Consensus 203 ~~~~v~~L~~d~~g~v~G---v~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~--~~~~tGdg~~~a-------~~a 270 (633)
.+..-+..+. .=+..++ +...+ ..|+...+.|..+|+|||...+ |+...+ .-+.|.|-+... +-+
T Consensus 128 LreKkV~Y~N-sygeFv~~h~I~at~-~~gk~~~~ta~~fvIatG~RPr-Yp~IpG~~Ey~ITSDDlFsl~~~PGkTLvV 204 (503)
T KOG4716|consen 128 LREKKVEYIN-SYGEFVDPHKIKATN-KKGKERFLTAENFVIATGLRPR-YPDIPGAKEYGITSDDLFSLPYEPGKTLVV 204 (503)
T ss_pred eccceeeeee-cceeecccceEEEec-CCCceEEeecceEEEEecCCCC-CCCCCCceeeeecccccccccCCCCceEEE
Confidence 3222222221 1122222 12222 4567778999999999998764 322111 112333332221 126
Q ss_pred CCCccCccccccc
Q 046556 271 GLPLEDLEFVQFH 283 (633)
Q Consensus 271 Ga~l~~~e~~~~~ 283 (633)
||.++.+|...|.
T Consensus 205 Ga~YVaLECAgFL 217 (503)
T KOG4716|consen 205 GAGYVALECAGFL 217 (503)
T ss_pred ccceeeeehhhhH
Confidence 7777777766554
No 68
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.54 E-value=1.5e-13 Score=150.36 Aligned_cols=36 Identities=33% Similarity=0.585 Sum_probs=33.2
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
+.+|||+|||||+||+.||..|++.|++|+|+|+..
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 346999999999999999999999999999999863
No 69
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.54 E-value=4.8e-14 Score=138.47 Aligned_cols=180 Identities=21% Similarity=0.315 Sum_probs=101.2
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHH
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
..++||.+|||||..|+++|.++++.|++|.|+|-.. . .||.|.+.+ |-|+
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f-~-------lGGTCVn~G---------------------CVPK 67 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF-G-------LGGTCVNVG---------------------CVPK 67 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC-C-------cCceEEeec---------------------cccc
Confidence 4568999999999999999999999999999999752 2 244444444 2233
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHH---HHHHHH-HHhCCC
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALL---HTLYGQ-AMKHNT 199 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~---~~l~~~-a~~~gv 199 (633)
.+..++....+.++....+|.+.... +.+.+.. .-. .+ .+++ ..+++. +.+.+|
T Consensus 68 Kvm~~~a~~~~~~~da~~yG~~~~~~--~~fdW~~-----------------ik~-kr--dayi~RLngIY~~~L~k~~V 125 (478)
T KOG0405|consen 68 KVMWYAADYSEEMEDAKDYGFPINEE--GSFDWKV-----------------IKQ-KR--DAYILRLNGIYKRNLAKAAV 125 (478)
T ss_pred eeEEehhhhhHHhhhhhhcCCccccc--cCCcHHH-----------------HHh-hh--hHHHHHHHHHHHhhccccce
Confidence 33333333334444455666665321 1111110 000 00 1111 223332 334577
Q ss_pred EEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHH-------cCC
Q 046556 200 QFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSR-------AGL 272 (633)
Q Consensus 200 ~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~-------aGa 272 (633)
+++.+..- + . +++.|. |.. .+|+...++|+.+++|+||......-.....+.+.||..-.-. +||
T Consensus 126 ~~i~G~a~--f-~-~~~~v~-V~~---~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gidSDgff~Lee~Pkr~vvvGa 197 (478)
T KOG0405|consen 126 KLIEGRAR--F-V-SPGEVE-VEV---NDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVVGA 197 (478)
T ss_pred eEEeeeEE--E-c-CCCceE-EEe---cCCeeEEEecceEEEEeCCccCCCCCCchhhccccccccchhhcCceEEEEcc
Confidence 77665421 1 2 344432 333 5777778999999999999763221111223556666654433 677
Q ss_pred CccCcccccc
Q 046556 273 PLEDLEFVQF 282 (633)
Q Consensus 273 ~l~~~e~~~~ 282 (633)
.++..||...
T Consensus 198 GYIavE~Agi 207 (478)
T KOG0405|consen 198 GYIAVEFAGI 207 (478)
T ss_pred ceEEEEhhhH
Confidence 7777776543
No 70
>PLN02507 glutathione reductase
Probab=99.53 E-value=8.3e-14 Score=152.98 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=32.2
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEee
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITK 78 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk 78 (633)
..+|||+|||+|++|+.||.+|++.|++|+|+||
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4579999999999999999999999999999997
No 71
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.52 E-value=1.3e-12 Score=138.90 Aligned_cols=61 Identities=20% Similarity=0.162 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
|..+.+.|.+.+++.|++++.++.|+++.. +++++.++.. .+|+...+.||.||+|||++.
T Consensus 258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~-~~~~V~~v~~---~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 258 GLRLQNALRRAFERLGGRIMPGDEVLGAEF-EGGRVTAVWT---RNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEE-eCCEEEEEEe---eCCceEEEECCEEEEeCCCcc
Confidence 334567788888889999999999999987 5667766543 356566799999999999764
No 72
>PRK06116 glutathione reductase; Validated
Probab=99.52 E-value=5.1e-14 Score=153.59 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=32.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.+|||+|||||+||++||+.|+++|++|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4699999999999999999999999999999985
No 73
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.52 E-value=2.7e-13 Score=135.02 Aligned_cols=144 Identities=24% Similarity=0.332 Sum_probs=99.3
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
.++||+|||||+|||+||+.|+++|.+|+|+||....++++. .|+.... .. ...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~--~gg~~~~--------------~~------~~~---- 73 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW--GGGMLFS--------------KI------VVE---- 73 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc--CCCccee--------------cc------ccc----
Confidence 469999999999999999999999999999999866544321 1221100 00 000
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEY 205 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~ 205 (633)
....++++++|+++....++.+. . ....+...|.+++.+.|++++.++
T Consensus 74 -------~~~~~~l~~~gi~~~~~~~g~~~-----------------------~--~~~el~~~L~~~a~e~GV~I~~~t 121 (254)
T TIGR00292 74 -------KPAHEILDEFGIRYEDEGDGYVV-----------------------A--DSAEFISTLASKALQAGAKIFNGT 121 (254)
T ss_pred -------chHHHHHHHCCCCeeeccCceEE-----------------------e--eHHHHHHHHHHHHHHcCCEEECCc
Confidence 12334667788887543222110 1 125788889999999999999999
Q ss_pred EEEEEEEccCC-cEEEEEEEEc---CCC---eEEEEEcCeEEEccCCcC
Q 046556 206 FALDLIMNSDG-TCQGVIALNM---EDG---TLHRFRAASTILATGGYG 247 (633)
Q Consensus 206 ~v~~L~~d~~g-~v~Gv~~~~~---~~G---~~~~i~A~~VVlAtGg~~ 247 (633)
.|.+|+.++++ +|+|+++... ..| +...++|+.||.|||..+
T Consensus 122 ~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 122 SVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred EEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 99999984332 7999987321 011 356799999999999665
No 74
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.51 E-value=1.3e-13 Score=150.49 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=31.9
Q ss_pred ccccEEEECCchHHHHHHHHHHhC-CCcEEEEeec
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKL 79 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~-G~~V~vlEk~ 79 (633)
++|||+|||||++|..||++|++. |.+|+||||.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 569999999999999999999997 9999999984
No 75
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.50 E-value=3e-13 Score=148.02 Aligned_cols=53 Identities=30% Similarity=0.430 Sum_probs=42.8
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN 99 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~ 99 (633)
+|||||||+|++|+.||+.|++.|++|+|+|+..+..+++....||.|.+.+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GC 54 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGC 54 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCc
Confidence 58999999999999999999999999999998644333444456777776664
No 76
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.49 E-value=4e-13 Score=124.61 Aligned_cols=140 Identities=24% Similarity=0.335 Sum_probs=100.0
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
.+.||+|||+||+||+||++|+++|+||+|+|+....+|+.. .||+...- -.+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w--~GGmlf~~-------------------------iVv 81 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW--GGGMLFNK-------------------------IVV 81 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc--ccccccce-------------------------eee
Confidence 357999999999999999999999999999999765544432 23332110 000
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEY 205 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~ 205 (633)
+. +.-+.|.+.|+++...++|.+.. ....+...|..++.+.|++|+..+
T Consensus 82 ~~------~a~~iL~e~gI~ye~~e~g~~v~-------------------------ds~e~~skl~~~a~~aGaki~n~~ 130 (262)
T COG1635 82 RE------EADEILDEFGIRYEEEEDGYYVA-------------------------DSAEFASKLAARALDAGAKIFNGV 130 (262)
T ss_pred cc------hHHHHHHHhCCcceecCCceEEe-------------------------cHHHHHHHHHHHHHhcCceeeecc
Confidence 00 12235778899988776653321 235677888888999999999999
Q ss_pred EEEEEEEccCC-cEEEEEEEEcC---CC---eEEEEEcCeEEEccC
Q 046556 206 FALDLIMNSDG-TCQGVIALNME---DG---TLHRFRAASTILATG 244 (633)
Q Consensus 206 ~v~~L~~d~~g-~v~Gv~~~~~~---~G---~~~~i~A~~VVlAtG 244 (633)
.|.+++. .++ +|+|+++.=.. .+ .+..++|+.||-|||
T Consensus 131 ~veDvi~-r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTG 175 (262)
T COG1635 131 SVEDVIV-RDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATG 175 (262)
T ss_pred eEEEEEE-ecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCC
Confidence 9999998 555 89999763110 11 245689999999999
No 77
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.6e-13 Score=139.66 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 182 TGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 182 ~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
.|..+++.+.+++...++++.. ..|.++.. .++ ..-+.+ .+|+ ++||.||+|||....
T Consensus 59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~-~~~-~F~v~t---~~~~---~~ak~vIiAtG~~~~ 116 (305)
T COG0492 59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVEL-EGG-PFKVKT---DKGT---YEAKAVIIATGAGAR 116 (305)
T ss_pred chHHHHHHHHHHHhhcCeEEEE-EEEEEEee-cCc-eEEEEE---CCCe---EEEeEEEECcCCccc
Confidence 4678899999999989999877 66777765 222 222222 4554 899999999997664
No 78
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.49 E-value=1.2e-13 Score=151.06 Aligned_cols=33 Identities=36% Similarity=0.737 Sum_probs=31.5
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
+|||+|||+|+||+.||+.|++.|++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 599999999999999999999999999999974
No 79
>PRK06370 mercuric reductase; Validated
Probab=99.49 E-value=1.7e-13 Score=149.96 Aligned_cols=37 Identities=35% Similarity=0.492 Sum_probs=33.9
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
++.+|||+|||||+||++||+.|++.|++|+|+||..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 3457999999999999999999999999999999863
No 80
>PLN02661 Putative thiazole synthesis
Probab=99.49 E-value=6.2e-13 Score=135.80 Aligned_cols=143 Identities=24% Similarity=0.328 Sum_probs=95.5
Q ss_pred ccccEEEECCchHHHHHHHHHHhC-CCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 124 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~-G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~ 124 (633)
.++||+|||+|++|++||+.|+++ |++|+|+||....+|+.. . ||... +.-
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~-~-gg~l~-------------------------~~~- 142 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW-L-GGQLF-------------------------SAM- 142 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee-e-Ccccc-------------------------ccc-
Confidence 468999999999999999999986 899999999755433221 1 11100 000
Q ss_pred HHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHh-CCCEEEE
Q 046556 125 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMK-HNTQFFV 203 (633)
Q Consensus 125 v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~-~gv~i~~ 203 (633)
.++. ...++|+++|++|... ++ +.. .. ....+...|.+++.+ .|++++.
T Consensus 143 ---vv~~--~a~e~LeElGV~fd~~-dg-y~v------------------v~-----ha~e~~stLi~ka~~~~gVkI~~ 192 (357)
T PLN02661 143 ---VVRK--PAHLFLDELGVPYDEQ-EN-YVV------------------IK-----HAALFTSTIMSKLLARPNVKLFN 192 (357)
T ss_pred ---cccc--HHHHHHHHcCCCcccC-CC-eeE------------------ec-----chHHHHHHHHHHHHhcCCCEEEe
Confidence 0000 1234678899998643 21 110 00 123556677776664 6899999
Q ss_pred EEEEEEEEEccCCcEEEEEEE------EcCC---CeEEEEEcCeEEEccCCcC
Q 046556 204 EYFALDLIMNSDGTCQGVIAL------NMED---GTLHRFRAASTILATGGYG 247 (633)
Q Consensus 204 ~~~v~~L~~d~~g~v~Gv~~~------~~~~---G~~~~i~A~~VVlAtGg~~ 247 (633)
++.+++|+. ++++|.||++. +..+ .+...|+||+||+|||+.+
T Consensus 193 ~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 193 AVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred CeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 999999999 67899999862 1112 1345799999999999544
No 81
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.45 E-value=1.6e-11 Score=134.13 Aligned_cols=153 Identities=27% Similarity=0.391 Sum_probs=88.0
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcc--cccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT--VAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t--~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
.+|||||||||+||+.||+.|++.|.+|+|+|+....-|.. ..+.||+.. .+..+.+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~ak-----------g~lvrEida-------- 63 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAK-----------GHLVREIDA-------- 63 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchh-----------hHHHHHHHh--------
Confidence 46999999999999999999999999999999863221211 111122100 000000000
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC-CCEEE
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH-NTQFF 202 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~-gv~i~ 202 (633)
............++.|...... +|...+.. ........+...+.+.+.+. |++++
T Consensus 64 -------lGg~~g~~~d~~giq~r~ln~s---------------kGpAV~s~--RaQiDr~ly~kaL~e~L~~~~nV~I~ 119 (618)
T PRK05192 64 -------LGGEMGKAIDKTGIQFRMLNTS---------------KGPAVRAL--RAQADRKLYRAAMREILENQPNLDLF 119 (618)
T ss_pred -------cCCHHHHHHhhccCceeecccC---------------CCCceeCc--HHhcCHHHHHHHHHHHHHcCCCcEEE
Confidence 0001111223334443211000 00000000 01112245667777777765 78875
Q ss_pred EEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 203 VEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 203 ~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
+..|++++. ++++|+||.+ .+|. .|.|+.||+|||.|.+
T Consensus 120 -q~~V~~Li~-e~grV~GV~t---~dG~--~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 120 -QGEVEDLIV-ENGRVVGVVT---QDGL--EFRAKAVVLTTGTFLR 158 (618)
T ss_pred -EeEEEEEEe-cCCEEEEEEE---CCCC--EEECCEEEEeeCcchh
Confidence 667999998 6789999987 4564 4899999999998864
No 82
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.44 E-value=1.4e-12 Score=144.97 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=110.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCC--HHHH------HHHH----H
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDD--WRWH------MYDT----V 113 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~--~~~~------~~d~----~ 113 (633)
.++||+|||||+.|+++|+.|+++|++|+||||.....|.|..+.|-+.........+. .... +.++ .
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~ 84 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV 84 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence 46999999999999999999999999999999987666666655554432221111111 0000 0110 0
Q ss_pred hcCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccC--CchHHHHHH
Q 046556 114 KGSDW--LGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAAD--RTGHALLHT 189 (633)
Q Consensus 114 ~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~--~~g~~l~~~ 189 (633)
..... +..++. .+ ......++.+...|++......... ...++..... .....+..+ .....++..
T Consensus 85 ~~~g~l~~~~~~~--~~-~~~~~~~~~~~~~Gi~~~~l~~~e~-~~~eP~l~~~------~~ga~~~~dg~vdp~rl~~a 154 (546)
T PRK11101 85 EPTDGLFITLPED--DL-AFQATFIRACEEAGIEAEAIDPQQA-LILEPAVNPA------LIGAVKVPDGTVDPFRLTAA 154 (546)
T ss_pred cccCCceEEeccc--cH-HHHHHHHHHHHHcCCCcEEECHHHH-HHhCCCcCcc------ceEEEEecCcEECHHHHHHH
Confidence 00000 000000 00 0011123344556665432111100 0001110000 001111111 124677888
Q ss_pred HHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 190 LYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 190 l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
+...++++|++++++++|+++.. ++++++||.+.+..+++...|+|+.||+|+|.|+
T Consensus 155 l~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 155 NMLDAKEHGAQILTYHEVTGLIR-EGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred HHHHHHhCCCEEEeccEEEEEEE-cCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence 88889999999999999999998 6789999998775667666799999999999886
No 83
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.43 E-value=7.3e-13 Score=147.56 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=32.5
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
..|||+|||||+|||+||+.|+++|++|+|+|+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 35999999999999999999999999999999863
No 84
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.43 E-value=8.8e-13 Score=145.02 Aligned_cols=54 Identities=31% Similarity=0.465 Sum_probs=39.8
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGN 99 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~ 99 (633)
..|||+|||||+||++||+.|+++|++|+|||+.......+....||.|.+.+.
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gc 57 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGC 57 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccc
Confidence 358999999999999999999999999999997432111222224666655543
No 85
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.43 E-value=2.4e-12 Score=141.22 Aligned_cols=33 Identities=42% Similarity=0.745 Sum_probs=31.8
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEee
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITK 78 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk 78 (633)
.+|||+|||||+||++||++|++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 469999999999999999999999999999998
No 86
>PRK10015 oxidoreductase; Provisional
Probab=99.43 E-value=4.5e-11 Score=129.07 Aligned_cols=58 Identities=26% Similarity=0.188 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+-..|.+++++.|++++.+++|+++.. ++++++++.. ++. .+.|+.||+|+|..+.
T Consensus 108 ~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~~----~~~--~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 108 NRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQA----GDD--ILEANVVILADGVNSM 165 (429)
T ss_pred hHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEEe----CCe--EEECCEEEEccCcchh
Confidence 45666788889999999999999999987 5677777653 222 5899999999997653
No 87
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.42 E-value=1.2e-12 Score=122.60 Aligned_cols=142 Identities=27% Similarity=0.328 Sum_probs=87.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
.++||+|||+|++||+||+.|+++|+||+|+|+....+|+.. .||+...-- .-+.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~--~Gg~lf~~i-VVq~---------------------- 70 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW--GGGMLFNKI-VVQE---------------------- 70 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT--S-CTT---E-EEET----------------------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc--ccccccchh-hhhh----------------------
Confidence 469999999999999999999999999999999755443322 122211000 0000
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEY 205 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~ 205 (633)
+....|++.|+++....+|.+.. .+..+...|..++.+.|++|+..+
T Consensus 71 --------~a~~iL~elgi~y~~~~~g~~v~-------------------------d~~~~~s~L~s~a~~aGakifn~~ 117 (230)
T PF01946_consen 71 --------EADEILDELGIPYEEYGDGYYVA-------------------------DSVEFTSTLASKAIDAGAKIFNLT 117 (230)
T ss_dssp --------TTHHHHHHHT---EE-SSEEEES--------------------------HHHHHHHHHHHHHTTTEEEEETE
T ss_pred --------hHHHHHHhCCceeEEeCCeEEEE-------------------------cHHHHHHHHHHHHhcCCCEEEeee
Confidence 01123567788887654432211 235677788888888999999999
Q ss_pred EEEEEEEccCCcEEEEEEEEc---C---CCeEEEEEcCeEEEccCC
Q 046556 206 FALDLIMNSDGTCQGVIALNM---E---DGTLHRFRAASTILATGG 245 (633)
Q Consensus 206 ~v~~L~~d~~g~v~Gv~~~~~---~---~G~~~~i~A~~VVlAtGg 245 (633)
.|.+|+..++++|.|+++.-. . .=.+..|+|+.||-|||-
T Consensus 118 ~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGH 163 (230)
T PF01946_consen 118 SVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGH 163 (230)
T ss_dssp EEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---S
T ss_pred eeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCC
Confidence 999998833489999987421 1 113567999999999994
No 88
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.42 E-value=2e-11 Score=133.14 Aligned_cols=152 Identities=24% Similarity=0.347 Sum_probs=86.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCC--cccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS--HTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g--~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
|||+|||+|+||+.||..+++.|.+|+|+|+.....| .+..+.||+.... +.+-+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~-----------l~rEida---------- 59 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGI-----------LVKEIDA---------- 59 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccch-----------hhhhhhc----------
Confidence 6999999999999999999999999999998632222 2222233331110 0000000
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC-CCEEEEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH-NTQFFVE 204 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~-gv~i~~~ 204 (633)
+ ...........++.|..... ..+. ..+... .......+...+.+.+++. |++++.
T Consensus 60 --L---GG~~~~~~d~~~i~~r~ln~------skgp---------AV~~~R--aQVDr~~y~~~L~e~Le~~pgV~Ile- 116 (617)
T TIGR00136 60 --L---GGLMGKAADKAGLQFRVLNS------SKGP---------AVRATR--AQIDKVLYRKAMRNALENQPNLSLFQ- 116 (617)
T ss_pred --c---cchHHHHHHhhceeheeccc------CCCC---------cccccH--HhCCHHHHHHHHHHHHHcCCCcEEEE-
Confidence 0 00001111222232221100 0000 000000 1112356777788888777 778764
Q ss_pred EEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 205 YFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 205 ~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..|++++.+++++++||.+ .+|. .|.|+.||+|||.|.+
T Consensus 117 ~~Vv~li~e~~g~V~GV~t---~~G~--~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 117 GEVEDLILEDNDEIKGVVT---QDGL--KFRAKAVIITTGTFLR 155 (617)
T ss_pred eEEEEEEEecCCcEEEEEE---CCCC--EEECCEEEEccCcccC
Confidence 5788888734789999987 4564 4899999999999964
No 89
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.41 E-value=1.4e-12 Score=142.86 Aligned_cols=33 Identities=45% Similarity=0.666 Sum_probs=31.9
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
+|||+|||||+||++||++|++.|++|+|+|++
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 599999999999999999999999999999986
No 90
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.41 E-value=3.3e-12 Score=140.14 Aligned_cols=35 Identities=37% Similarity=0.569 Sum_probs=33.0
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
...|||+|||||+||++||++|++.|++|+|+|+.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 35799999999999999999999999999999986
No 91
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.41 E-value=1.2e-12 Score=146.60 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=37.1
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCccccccc
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQG 91 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~G 91 (633)
+.+|||+|||+|++|..||+.|++.|++|+|||+....-|+++...|
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~G 160 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVG 160 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeC
Confidence 34799999999999999999999999999999974222344443333
No 92
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.41 E-value=5.8e-12 Score=137.99 Aligned_cols=37 Identities=35% Similarity=0.433 Sum_probs=33.8
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
+..|||+|||||+||+.||+.|++.|++|+|+||...
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~ 39 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN 39 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 3569999999999999999999999999999999643
No 93
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.40 E-value=2.7e-12 Score=140.55 Aligned_cols=35 Identities=37% Similarity=0.566 Sum_probs=33.0
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
.+|||+|||||+||++||..|++.|.+|+|+||..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999999999999864
No 94
>PRK14694 putative mercuric reductase; Provisional
Probab=99.40 E-value=4.4e-12 Score=138.94 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=34.3
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
.+..|||+|||||+||++||+.|++.|.+|+|+|++.
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 4578999999999999999999999999999999963
No 95
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.40 E-value=6.9e-11 Score=126.64 Aligned_cols=151 Identities=23% Similarity=0.249 Sum_probs=85.8
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI 125 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v 125 (633)
.+|||+|||+||||++||+.|+++|++|+|+||....+..... .+++.. ...+... . ....+ +
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~-~~~~~~-------~~l~~l~----~----~~~~~-i 64 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC-GGGLSP-------RALEELI----P----DFDEE-I 64 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc-cceech-------hhHHHhC----C----Ccchh-h
Confidence 4699999999999999999999999999999998665443332 111110 0000000 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEE
Q 046556 126 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEY 205 (633)
Q Consensus 126 ~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~ 205 (633)
.. ... +..+.. .+....+.... ...+..+ -..+.+.|.+++++.|++++.++
T Consensus 65 ~~----------~v~--~~~~~~-----------~~~~~~~~~~~---~~~y~v~--R~~fd~~La~~A~~aGae~~~~~ 116 (396)
T COG0644 65 ER----------KVT--GARIYF-----------PGEKVAIEVPV---GEGYIVD--RAKFDKWLAERAEEAGAELYPGT 116 (396)
T ss_pred he----------eee--eeEEEe-----------cCCceEEecCC---CceEEEE--hHHhhHHHHHHHHHcCCEEEece
Confidence 00 000 000000 00000000000 0000111 24677789999999999999999
Q ss_pred EEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 206 FALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 206 ~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
+++++..++++.++++.. ++ .+++|+.||.|+|..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~----~~--~e~~a~~vI~AdG~~s 152 (396)
T COG0644 117 RVTGVIREDDGVVVGVRA----GD--DEVRAKVVIDADGVNS 152 (396)
T ss_pred EEEEEEEeCCcEEEEEEc----CC--EEEEcCEEEECCCcch
Confidence 999999844454444432 22 5699999999999554
No 96
>PRK14727 putative mercuric reductase; Provisional
Probab=99.37 E-value=1.2e-11 Score=135.76 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=34.2
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
.+..|||+|||+|++|+.||+.|++.|.+|+|+|+...
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~ 50 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV 50 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence 34569999999999999999999999999999998633
No 97
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.36 E-value=6.3e-13 Score=146.96 Aligned_cols=58 Identities=26% Similarity=0.242 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
+..+...+.+.+++.|++++.+++|+++.. +++.. .+.+ .+|+ .+.++.+|+|||...
T Consensus 266 ~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~-~~~~~-~v~~---~~g~--~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 266 GSQLAANLEEHIKQYPIDLMENQRAKKIET-EDGLI-VVTL---ESGE--VLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHHHhCCeEEcCCEEEEEEe-cCCeE-EEEE---CCCC--EEEeCEEEECCCCCc
Confidence 456777788888888999999999999977 33322 2222 4554 489999999999764
No 98
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.36 E-value=2.4e-11 Score=132.86 Aligned_cols=32 Identities=25% Similarity=0.383 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
||+|||+|++|+.||..|++.|.+|+|+||..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999999999999864
No 99
>PRK07846 mycothione reductase; Reviewed
Probab=99.36 E-value=7.8e-12 Score=135.98 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=28.2
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
+|||+|||+|++|..||.++ .|++|+|+||..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC
Confidence 38999999999999999774 599999999853
No 100
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=3.7e-12 Score=117.94 Aligned_cols=120 Identities=21% Similarity=0.284 Sum_probs=80.5
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHH
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 124 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~ 124 (633)
.+...|+|||+|||+..||++|+++.+|.+|+|-.... + .+.||.......
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~-~---i~pGGQLtTTT~------------------------- 56 (322)
T KOG0404|consen 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN-G---IAPGGQLTTTTD------------------------- 56 (322)
T ss_pred eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeecc-C---cCCCceeeeeec-------------------------
Confidence 34567999999999999999999999999999974321 1 112333221110
Q ss_pred HHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEE
Q 046556 125 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVE 204 (633)
Q Consensus 125 v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~ 204 (633)
...|+|.+ ....|..+++.+++++.+.|.+|+.+
T Consensus 57 -------------------------------veNfPGFP---------------dgi~G~~l~d~mrkqs~r~Gt~i~tE 90 (322)
T KOG0404|consen 57 -------------------------------VENFPGFP---------------DGITGPELMDKMRKQSERFGTEIITE 90 (322)
T ss_pred -------------------------------cccCCCCC---------------cccccHHHHHHHHHHHHhhcceeeee
Confidence 00111211 12256899999999999999999886
Q ss_pred EEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 205 YFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 205 ~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
+ |.++.. .+++.-+++ ..+ .+.|++||+|||+.++
T Consensus 91 t-Vskv~~--sskpF~l~t---d~~---~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 91 T-VSKVDL--SSKPFKLWT---DAR---PVTADAVILATGASAK 125 (322)
T ss_pred e-hhhccc--cCCCeEEEe---cCC---ceeeeeEEEeccccee
Confidence 5 777755 344444443 222 3899999999998764
No 101
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.34 E-value=1.7e-12 Score=142.10 Aligned_cols=34 Identities=41% Similarity=0.511 Sum_probs=32.0
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.+|||+|||||+||++||..|++.|++|+|+|+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3599999999999999999999999999999994
No 102
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.34 E-value=1.6e-11 Score=131.55 Aligned_cols=199 Identities=19% Similarity=0.133 Sum_probs=110.0
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHH------HhcCCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDT------VKGSDWL 119 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~------~~~~~~~ 119 (633)
.++||+|||||+.|+-+|..|+.+|++|+|+||+....|.|+.+.+-+...+.+...+.+....+.. .+....+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH~ 90 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPHL 90 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCccc
Confidence 6799999999999999999999999999999999888787777654433322222222221111100 1111111
Q ss_pred CCHH----------HHHHHHHHHHHHHHHHHHC--CCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHH
Q 046556 120 GDQD----------AIQYMCREAPKAVIELENY--GLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALL 187 (633)
Q Consensus 120 ~~~~----------~v~~~~~~~~~~~~~l~~~--Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~ 187 (633)
..|. .-..+....-...+++... -.+-.+.-+..-.....+........|+..+- ........+.
T Consensus 91 v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~---D~~vddaRLv 167 (532)
T COG0578 91 VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYP---DGVVDDARLV 167 (532)
T ss_pred cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEc---cceechHHHH
Confidence 1000 0000000011111111100 00000000000000000000000000000000 0011124677
Q ss_pred HHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC
Q 046556 188 HTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA 249 (633)
Q Consensus 188 ~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 249 (633)
..+...|.+.|.++++.++|+.++. +++ |+||.+.|..+|+.+.|+|+.||.|||.|...
T Consensus 168 ~~~a~~A~~~Ga~il~~~~v~~~~r-e~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 168 AANARDAAEHGAEILTYTRVESLRR-EGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHhcccchhhcceeeeeee-cCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 7778888899999999999999999 667 99999999889999999999999999998743
No 103
>PRK13748 putative mercuric reductase; Provisional
Probab=99.34 E-value=3.8e-11 Score=134.81 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=32.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.+|||+|||+|+||++||+.|++.|.+|+|+|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999986
No 104
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.33 E-value=3.7e-11 Score=126.69 Aligned_cols=180 Identities=18% Similarity=0.252 Sum_probs=99.9
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcC-CHHH-------HHHHHHhcCC--C
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTED-DWRW-------HMYDTVKGSD--W 118 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d-~~~~-------~~~d~~~~~~--~ 118 (633)
||+|||||++|+++|+.|++.|.+|+|+|++.+..+.|..+ +|+.........+ .... .+.++..... .
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~-~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRS-GGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPV 79 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSS-SEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccc-cccccccccccccccccchhhhhccchhhhhhhcCccc
Confidence 89999999999999999999999999999995555555444 4443322000011 0000 0111111000 0
Q ss_pred ---------C-CCHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCC---chHH
Q 046556 119 ---------L-GDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADR---TGHA 185 (633)
Q Consensus 119 ---------~-~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~---~g~~ 185 (633)
+ .++.... ......+.+...|+++.......+. ..++.... ......+..+. ....
T Consensus 80 ~~~~~g~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~------~~~~~~~~~~~g~i~~~~ 148 (358)
T PF01266_consen 80 GFRPCGSLYLAEDEEDAE----SLERLLDRLRRNGIPYELLSPEELR-ELFPFLNP------RIEGGVFFPEGGVIDPRR 148 (358)
T ss_dssp EEEECEEEEEESSHHHHH----HHHHHHHHHHHTTTTEEEEEHHHHH-HHSTTSST------TTEEEEEETTEEEEEHHH
T ss_pred ccccccccccccchhhhh----hccccccccccccccccccchhhhh-hhhccccc------chhhhhcccccccccccc
Confidence 0 0122111 1122333445555543221110000 00000000 00011111111 2478
Q ss_pred HHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 186 LLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 186 l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
++..|.+.+++.|++++++++|++|.. +++++.||.+ .+|+ ++||.||+|+|.++
T Consensus 149 l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~---~~g~---i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 149 LIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRT---SDGE---IRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEE---TTEE---EEECEEEE--GGGH
T ss_pred hhhhhHHHHHHhhhhccccccccchhh-cccccccccc---cccc---cccceeEecccccc
Confidence 999999999999999999999999999 6888888887 5663 89999999999876
No 105
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.31 E-value=6.3e-11 Score=130.70 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
...++..+...+++.|++++++++|+++.. +++ .+++.+.+..+|+...|+|+.||+|+|.|+.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~-~~~-~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARR-ENG-LWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEE-eCC-EEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 456777888888999999999999999987 444 3567776545676667999999999998873
No 106
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.31 E-value=3.2e-12 Score=141.54 Aligned_cols=113 Identities=28% Similarity=0.348 Sum_probs=78.0
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHH
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 124 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~ 124 (633)
...|||+|||||+||++||.+|++.|++|+|+++. . ||...... .
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~--------GG~~~~~~-----~-------------------- 253 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--F--------GGQVLDTM-----G-------------------- 253 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--C--------CCeeeccC-----c--------------------
Confidence 34699999999999999999999999999999863 1 22211000 0
Q ss_pred HHHHHHHHHHHHHHHHH-CCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEE
Q 046556 125 IQYMCREAPKAVIELEN-YGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFV 203 (633)
Q Consensus 125 v~~~~~~~~~~~~~l~~-~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~ 203 (633)
+.. .+++ ...+..+...+.+.+++.|++++.
T Consensus 254 --------------~~~~~~~~----------------------------------~~~~~~l~~~l~~~~~~~gv~i~~ 285 (517)
T PRK15317 254 --------------IENFISVP----------------------------------ETEGPKLAAALEEHVKEYDVDIMN 285 (517)
T ss_pred --------------ccccCCCC----------------------------------CCCHHHHHHHHHHHHHHCCCEEEc
Confidence 000 0000 113457788888888899999999
Q ss_pred EEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 204 EYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 204 ~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
+++|+++.. +++. ..+.+ .+|+ .+.++.||+|||+..
T Consensus 286 ~~~V~~I~~-~~~~-~~V~~---~~g~--~i~a~~vViAtG~~~ 322 (517)
T PRK15317 286 LQRASKLEP-AAGL-IEVEL---ANGA--VLKAKTVILATGARW 322 (517)
T ss_pred CCEEEEEEe-cCCe-EEEEE---CCCC--EEEcCEEEECCCCCc
Confidence 999999977 3332 22222 4554 489999999999854
No 107
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.31 E-value=2.6e-11 Score=131.91 Aligned_cols=42 Identities=31% Similarity=0.447 Sum_probs=35.3
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccc
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVA 88 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~ 88 (633)
+|||+|||||+||++||+.|+++|++|+|+|+.....|+++.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 599999999999999999999999999999996432344433
No 108
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.30 E-value=4.1e-11 Score=131.29 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=31.4
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
+|||+|||||+||+.||.+|++.|.+|+|+|+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 389999999999999999999999999999993
No 109
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.30 E-value=4.2e-11 Score=130.86 Aligned_cols=32 Identities=38% Similarity=0.465 Sum_probs=30.4
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
+|+|||||+||++||.+|++.|.+|+|+||..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 69999999999999999999999999999964
No 110
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.30 E-value=7.1e-12 Score=137.28 Aligned_cols=33 Identities=36% Similarity=0.541 Sum_probs=31.6
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
|||+|||||+||++||+.|++.|++|+|+||..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 799999999999999999999999999999864
No 111
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.30 E-value=3.1e-11 Score=135.76 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEcc-CCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNS-DGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
...+...|...+++.|++++++++|++|..++ +++++||.+.+..+++.+.|.|+.||+|+|.|+.
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~ 297 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD 297 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH
Confidence 46788889999999999999999999998843 5789999887766776667899999999999874
No 112
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.29 E-value=1.3e-11 Score=134.14 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=32.5
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
+|||+|||||+||++||..|++.|.+|+|+||..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 6999999999999999999999999999999974
No 113
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.28 E-value=3.1e-11 Score=131.39 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=27.8
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
+|||+|||+|++|..||..+ .|.+|+|+|+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC
Confidence 58999999999999987554 699999999853
No 114
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.26 E-value=2.1e-11 Score=134.54 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
...++..+...+++.|++++.+++|+++.. +++ .+++.+.+.. |+...++|+.||.|+|.|+.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~-~~~-~~~v~~~~~~-g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARR-EGG-LWRVETRDAD-GETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEE-cCC-EEEEEEEeCC-CCEEEEEecEEEECCCccHH
Confidence 467777888889999999999999999988 444 4567665533 76778999999999998874
No 115
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.23 E-value=5e-11 Score=122.78 Aligned_cols=33 Identities=39% Similarity=0.587 Sum_probs=31.4
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
|||+|||||+||++||..|++.|.+|+|+|+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 699999999999999999999999999999874
No 116
>PLN02697 lycopene epsilon cyclase
Probab=99.23 E-value=8.6e-10 Score=120.77 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+.+.|.+++.+.|+++ .++.|+++.. +++.+..+.+ .+|. .+.|+.||.|+|..+.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~-~~~~~~vv~~---~dG~--~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITE-ASDGLRLVAC---EDGR--VIPCRLATVASGAASG 249 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEE-cCCcEEEEEE---cCCc--EEECCEEEECCCcChh
Confidence 577888999988899998 6778999887 4444432322 3454 4899999999998773
No 117
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.23 E-value=5e-09 Score=107.98 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY 250 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~ 250 (633)
-..+++.+.+.+++.|++|+++++|.++.. +++.+.+|.. .+|+. |.|+.||+|.|-.++.|
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~---~~g~~--i~~~~vvlA~Grsg~dw 233 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKL---TKGEE--IEADYVVLAPGRSGRDW 233 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEc---cCCcE--EecCEEEEccCcchHHH
Confidence 367888999999999999999999999999 7777777776 56654 99999999999766543
No 118
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.22 E-value=2.3e-10 Score=123.32 Aligned_cols=193 Identities=15% Similarity=0.129 Sum_probs=103.8
Q ss_pred cccccEEEECCchHHHHHHHHHHhC-CC-cEEEEeecCCCCCcccccccceeeecCCCCcCCHHH----HHHHHHhc-C-
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEH-GF-NTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRW----HMYDTVKG-S- 116 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~-G~-~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~----~~~d~~~~-~- 116 (633)
..++||+|||||++|+++|+.|+++ |. +|+|+||..+..+.|..+.|.+.............. .+.++.+. +
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~~~ 107 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLNY 107 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHHHHHhCC
Confidence 3578999999999999999999995 85 999999987666666555554433222111111111 01111111 0
Q ss_pred C--CC--------CCHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEc---cCCch
Q 046556 117 D--WL--------GDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACA---ADRTG 183 (633)
Q Consensus 117 ~--~~--------~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~---~~~~g 183 (633)
. +. .+++.. +.....++.+...|++........+. ..++.....-..........+. .....
T Consensus 108 ~~~~~~~G~l~~a~~~~~~----~~l~~~~~~~~~~g~~~~~l~~~el~-~~~P~l~~~~~~~~~~~ga~~~~~~g~v~p 182 (407)
T TIGR01373 108 NVMFSQRGVLNLCHSTADM----DDGARRVNAMRLNGVDAELLSPEQVR-RVIPILDFSPDARFPVVGGLLQRRGGTARH 182 (407)
T ss_pred CcCEEeccEEEEeCCHHHH----HHHHHHHHHHHHcCCCeEEeCHHHHH-HhCCCCccccccccceeEEEEcCCCCcCCH
Confidence 0 00 011111 11122233344567664332111110 1111110000000000011111 11122
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+++.|++++.+++|+++..++++++.++.+ .+| .+.|+.||+|+|++..
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t---~~g---~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVET---TRG---FIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEe---CCc---eEECCEEEECCChhhH
Confidence 4566778888999999999999999997634577777765 455 3899999999999873
No 119
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.21 E-value=2.6e-11 Score=121.02 Aligned_cols=145 Identities=23% Similarity=0.308 Sum_probs=82.5
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCC--HHHHHHHHHhcCCCCCCHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDD--WRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~--~~~~~~d~~~~~~~~~~~~ 123 (633)
.+|||+|||+||+|..||+.|++.|++.+++||.... |+++.+.|.+ +... ...|++..+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L-GGTcLnvGcI-------PSKALL~nSh~yh~~q--------- 100 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL-GGTCLNVGCI-------PSKALLNNSHLYHEAQ--------- 100 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc-Cceeeecccc-------ccHHHhhhhHHHHHHh---------
Confidence 5899999999999999999999999999999996432 3343333333 1100 0111111110
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEE
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFV 203 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~ 203 (633)
+ +.+++.|+...... +... ......+..-..+...+...+++.+|+++.
T Consensus 101 -------~-----~~~~~rGi~vs~~~---~dl~----------------~~~~~k~~~vk~Lt~gi~~lfkknkV~~~k 149 (506)
T KOG1335|consen 101 -------H-----EDFASRGIDVSSVS---LDLQ----------------AMMKAKDNAVKQLTGGIENLFKKNKVTYVK 149 (506)
T ss_pred -------h-----hHHHhcCcccccee---cCHH----------------HHHHHHHHHHHHHhhHHHHHhhhcCeEEEe
Confidence 0 13556676653110 0000 000001111234555566666777888776
Q ss_pred EEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCc
Q 046556 204 EYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGY 246 (633)
Q Consensus 204 ~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 246 (633)
++- -.. +..+|. + ...+|+...+.||.+|+|||.-
T Consensus 150 G~g---sf~-~p~~V~---v-~k~dg~~~ii~aKnIiiATGSe 184 (506)
T KOG1335|consen 150 GFG---SFL-DPNKVS---V-KKIDGEDQIIKAKNIIIATGSE 184 (506)
T ss_pred eeE---eec-CCceEE---E-eccCCCceEEeeeeEEEEeCCc
Confidence 542 223 233332 2 2257888899999999999973
No 120
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.20 E-value=6.8e-10 Score=121.25 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
...++..|.+.+++.|++++++++|+++..++++.+. +.+.+..+|+...++|+.||+|+|+++.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWT-VTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEE-EEEeeccCCceEEEECCEEEECCCcchH
Confidence 4688999999999999999999999999873334332 3333334554446899999999999873
No 121
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.20 E-value=6.4e-10 Score=120.01 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCC-eEEEEEcCeEEEccCCcC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDG-TLHRFRAASTILATGGYG 247 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G-~~~~i~A~~VVlAtGg~~ 247 (633)
...++..|.+.+++.|++++++++|+++.. +++.++ +.+.+ .++ +...++|+.||+|+|.++
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~-~~~~~~-v~~~~-~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKT-DGGGVV-LTVQP-SAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEE-eCCEEE-EEEEc-CCCCccceEecCEEEECCCcCh
Confidence 356778888999999999999999999987 455443 33322 111 022489999999999886
No 122
>PRK12831 putative oxidoreductase; Provisional
Probab=99.20 E-value=4.8e-09 Score=114.37 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=33.9
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 82 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~ 82 (633)
....||+|||||+|||+||+.|++.|++|+|+|+....
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 34579999999999999999999999999999986543
No 123
>PRK10262 thioredoxin reductase; Provisional
Probab=99.20 E-value=1.6e-11 Score=127.95 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=32.5
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
+..+||+|||||+|||+||..|+++|.+|+|+|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 45789999999999999999999999999999965
No 124
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.19 E-value=4.3e-10 Score=122.93 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=40.2
Q ss_pred cccccEEEECCchHHHHHHHHHHhC--CCcEEEEeecCCCCCccccccc
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFPTRSHTVAAQG 91 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~~~~~g~t~~~~G 91 (633)
+.++||+|||||++|+++|++|+++ |.+|+|||++....|.|..+.|
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn~G 70 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGG 70 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccccccccccCc
Confidence 4578999999999999999999998 8999999998766666655554
No 125
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.19 E-value=2.6e-10 Score=123.30 Aligned_cols=57 Identities=30% Similarity=0.307 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
..+...|.+++++.|++++.++.|+++.. ++++++++.. +|+ .+.|+.||+|+|..+
T Consensus 108 ~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~~----~g~--~i~A~~VI~A~G~~s 164 (428)
T PRK10157 108 SKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVEA----DGD--VIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEEc----CCc--EEECCEEEEEeCCCH
Confidence 46677888889999999999999999987 5677766542 344 489999999999654
No 126
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.19 E-value=4.2e-10 Score=121.69 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
...++..|.+.+++.|++|+++++|+++.. +++++.++.+ .++ .+.|+.||+|+|.++
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~t---~~~---~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLV-EGGRITGVQT---GGG---VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCEEEEEEe---CCc---EEeCCEEEECCCcch
Confidence 457788898989999999999999999987 5666766654 334 388999999999876
No 127
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=4.5e-10 Score=117.82 Aligned_cols=152 Identities=24% Similarity=0.316 Sum_probs=87.0
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCccc--ccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTV--AAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~--~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
.+|||||||||-||+-||+.+++.|++++|+......-|..+ .+-||+....--..-|. +.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDA--------LG--------- 65 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDA--------LG--------- 65 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehh--------cc---------
Confidence 359999999999999999999999999999987543333222 23344321100000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHh-CCCEEE
Q 046556 124 AIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMK-HNTQFF 202 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~-~gv~i~ 202 (633)
..+-....+.|+.|.-... ++|..++......|+ ..+...+.+.++. .|+.++
T Consensus 66 ---------G~Mg~~~D~~~IQ~r~LN~---------------sKGPAVra~RaQaDk--~~Y~~~mk~~le~~~NL~l~ 119 (621)
T COG0445 66 ---------GLMGKAADKAGIQFRMLNS---------------SKGPAVRAPRAQADK--WLYRRAMKNELENQPNLHLL 119 (621)
T ss_pred ---------chHHHhhhhcCCchhhccC---------------CCcchhcchhhhhhH--HHHHHHHHHHHhcCCCceeh
Confidence 0000111234455432110 011111111111222 3445556666554 377775
Q ss_pred EEEEEEEEEEccCC-cEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 203 VEYFALDLIMNSDG-TCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 203 ~~~~v~~L~~d~~g-~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
. ..|++|+. +++ +|+||++ .+|.. |.|++|||+||.|=
T Consensus 120 q-~~v~dli~-e~~~~v~GV~t---~~G~~--~~a~aVVlTTGTFL 158 (621)
T COG0445 120 Q-GEVEDLIV-EEGQRVVGVVT---ADGPE--FHAKAVVLTTGTFL 158 (621)
T ss_pred H-hhhHHHhh-cCCCeEEEEEe---CCCCe--eecCEEEEeecccc
Confidence 4 56899998 555 6999988 56764 99999999999874
No 128
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.16 E-value=2.6e-11 Score=131.00 Aligned_cols=147 Identities=25% Similarity=0.230 Sum_probs=34.6
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHHHHH
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYM 128 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~~~ 128 (633)
||||||||+||++||+.|++.|++|+||||....+|... .++....... .... ..+..+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t--~~~~~~~~~~---~~~~----------------~~~~gi 59 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT--SGGVSPFDGN---HDED----------------QVIGGI 59 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG--GSSS-EETTE---EHHH----------------HHHHHH
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce--ECCcCChhhc---chhh----------------ccCCCH
Confidence 899999999999999999999999999999866544332 2333222211 0000 001111
Q ss_pred HHHHHHHHHHHHHCCCc-ccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhCCCEEEEEEEE
Q 046556 129 CREAPKAVIELENYGLP-FSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFA 207 (633)
Q Consensus 129 ~~~~~~~~~~l~~~Gv~-f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~gv~i~~~~~v 207 (633)
..+.++.+...|-. .. ...+ + ...... ....+...|.+.+.+.|++++.++.|
T Consensus 60 ---~~e~~~~~~~~~~~~~~-~~~~---------~-----------~~~~~~--~~~~~~~~l~~~l~e~gv~v~~~t~v 113 (428)
T PF12831_consen 60 ---FREFLNRLRARGGYPQE-DRYG---------W-----------VSNVPF--DPEVFKAVLDEMLAEAGVEVLLGTRV 113 (428)
T ss_dssp ---HHHHHHST---------------------------------------------------------------------
T ss_pred ---HHHHHHHHhhhcccccc-cccc---------c-----------cccccc--cccccccccccccccccccccccccc
Confidence 11111111111100 00 0000 0 000000 00122233444556789999999999
Q ss_pred EEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCC
Q 046556 208 LDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGG 245 (633)
Q Consensus 208 ~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 245 (633)
++++. ++++|+||.+.+. .| ...|+|+.||-|||-
T Consensus 114 ~~v~~-~~~~i~~V~~~~~-~g-~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 114 VDVIR-DGGRITGVIVETK-SG-RKEIRAKVFIDATGD 148 (428)
T ss_dssp --------------------------------------
T ss_pred ccccc-ccccccccccccc-cc-ccccccccccccccc
Confidence 99999 6889999999763 35 568999999999994
No 129
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.15 E-value=9.7e-10 Score=115.65 Aligned_cols=192 Identities=19% Similarity=0.136 Sum_probs=102.9
Q ss_pred ccccEEEECCchHHHHHHHHHHhCC--CcEEEEeecCCCCCccccc-ccceeeecCCCCcCCHHH--------HHHHHHh
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHG--FNTACITKLFPTRSHTVAA-QGGINAALGNMTEDDWRW--------HMYDTVK 114 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G--~~V~vlEk~~~~~g~t~~~-~Gg~~~~~~~~~~d~~~~--------~~~d~~~ 114 (633)
..+||+|||||+.|+++|+.|++.+ ++|+|+||....+..++.. +|-+.+.+.+ ++.+... ..+++.+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y-~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYY-TPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccC-CCcchhhHHHHHHHHHHHHHHH
Confidence 3589999999999999999999998 9999999976555444433 3333322222 1222110 0112211
Q ss_pred cCC--CCCCHHHHHH----HHHHHHHHHHHHHHCCCc-ccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHH
Q 046556 115 GSD--WLGDQDAIQY----MCREAPKAVIELENYGLP-FSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALL 187 (633)
Q Consensus 115 ~~~--~~~~~~~v~~----~~~~~~~~~~~l~~~Gv~-f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~ 187 (633)
.-. +...+.++-. -.+......+.+.+.|++ +... +..-.....+..... .................++
T Consensus 81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~l-d~~~i~~~eP~l~~~---~~aal~~p~~giV~~~~~t 156 (429)
T COG0579 81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEIL-DKEEIKELEPLLNEG---AVAALLVPSGGIVDPGELT 156 (429)
T ss_pred HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeec-CHHHHHhhCcccccc---ceeeEEcCCCceEcHHHHH
Confidence 110 1111111110 111122233344455655 1111 110000011110000 0000000001122346788
Q ss_pred HHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 188 HTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 188 ~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
..|.+.+.+.|+++.++++|++|..+.+| + ...+..+|+.. ++|+.||.|+|+++
T Consensus 157 ~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~---~~~~~~~g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 157 RALAEEAQANGVELRLNTEVTGIEKQSDG-V---FVLNTSNGEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HHHHHHHHHcCCEEEecCeeeEEEEeCCc-e---EEEEecCCcEE-EEeeEEEECCchhH
Confidence 99999999999999999999999984444 2 33333677665 99999999999876
No 130
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.15 E-value=4.1e-10 Score=117.06 Aligned_cols=150 Identities=24% Similarity=0.312 Sum_probs=83.4
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCc--ccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHHHH
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH--TVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ 126 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~--t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~v~ 126 (633)
||+|||||.||+.||+.|++.|++|+|+......-+. +..+.||+ ....+++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~--------------------------~kg~L~~ 54 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGI--------------------------AKGHLVR 54 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEEST--------------------------THHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccc--------------------------cccchhH
Confidence 8999999999999999999999999999432111111 11111111 0011111
Q ss_pred HHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHh-CCCEEEEEE
Q 046556 127 YMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMK-HNTQFFVEY 205 (633)
Q Consensus 127 ~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~-~gv~i~~~~ 205 (633)
.+-.....+.......++.|...... +|...+......|+ ..+...+.+.++. .+++++ +.
T Consensus 55 Eidalgg~m~~~aD~~~i~~~~lN~s---------------kGpav~a~r~qvDr--~~y~~~~~~~l~~~~nl~i~-~~ 116 (392)
T PF01134_consen 55 EIDALGGLMGRAADETGIHFRMLNRS---------------KGPAVHALRAQVDR--DKYSRAMREKLESHPNLTII-QG 116 (392)
T ss_dssp HHHHTT-SHHHHHHHHEEEEEEESTT---------------S-GGCTEEEEEE-H--HHHHHHHHHHHHTSTTEEEE-ES
T ss_pred HHhhhhhHHHHHHhHhhhhhhccccc---------------CCCCccchHhhccH--HHHHHHHHHHHhcCCCeEEE-Ec
Confidence 11111112222333444544322110 01111111112222 4566667777776 478885 67
Q ss_pred EEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 206 FALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 206 ~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
+|++|+. ++++|+||.+ .+|+. +.|+.||+|||.|.+
T Consensus 117 ~V~~l~~-e~~~v~GV~~---~~g~~--~~a~~vVlaTGtfl~ 153 (392)
T PF01134_consen 117 EVTDLIV-ENGKVKGVVT---KDGEE--IEADAVVLATGTFLN 153 (392)
T ss_dssp -EEEEEE-CTTEEEEEEE---TTSEE--EEECEEEE-TTTGBT
T ss_pred ccceEEe-cCCeEEEEEe---CCCCE--EecCEEEEecccccC
Confidence 8999999 7899999988 57764 999999999999654
No 131
>PLN02463 lycopene beta cyclase
Probab=99.14 E-value=7.8e-09 Score=111.52 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
...+.+.|.+++.+.|++++ ...|+++.. +++. +.|.+ .+|+ .+.|+.||.|+|..+.
T Consensus 113 R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~-~~~~-~~V~~---~dG~--~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 113 RKKLKSKMLERCIANGVQFH-QAKVKKVVH-EESK-SLVVC---DDGV--KIQASLVLDATGFSRC 170 (447)
T ss_pred HHHHHHHHHHHHhhcCCEEE-eeEEEEEEE-cCCe-EEEEE---CCCC--EEEcCEEEECcCCCcC
Confidence 35777888888888899986 578999887 4443 33444 4564 4899999999997653
No 132
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.13 E-value=3.9e-10 Score=116.10 Aligned_cols=58 Identities=24% Similarity=0.368 Sum_probs=44.3
Q ss_pred HHHHHHhC-CCEEEEEEEEEEEEEc-cCCcEEEEEEEEcCCC-eEEEEEcCeEEEccCCcC
Q 046556 190 LYGQAMKH-NTQFFVEYFALDLIMN-SDGTCQGVIALNMEDG-TLHRFRAASTILATGGYG 247 (633)
Q Consensus 190 l~~~a~~~-gv~i~~~~~v~~L~~d-~~g~v~Gv~~~~~~~G-~~~~i~A~~VVlAtGg~~ 247 (633)
++..+.+. |++|++++.|++|+.+ ++++++||.+.+.... ....+.++.||||+|++.
T Consensus 198 ~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 198 YLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp HHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHH
T ss_pred ccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCC
Confidence 33344444 9999999999999873 4689999999885444 356778899999999876
No 133
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.12 E-value=2e-08 Score=109.37 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=33.9
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 82 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~ 82 (633)
....+|+|||+|+|||+||..|++.|++|+|+|+....
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34679999999999999999999999999999996543
No 134
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.11 E-value=2e-09 Score=115.37 Aligned_cols=57 Identities=12% Similarity=0.029 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
...+...|.+.+++.|+++++++.|+++.. +++.+ .+.+ .+| .+.|+.||+|+|.++
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~-~~~~~-~V~~---~~g---~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDE-HANGV-VVRT---TQG---EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEe-cCCeE-EEEE---CCC---EEEeCEEEECCCcch
Confidence 467888999999999999999999999987 44543 3433 344 489999999999876
No 135
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.11 E-value=3.7e-11 Score=124.90 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=111.4
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCccccc----ccceeeecCCCCcCCHHHH---HH------H
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAA----QGGINAALGNMTEDDWRWH---MY------D 111 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~----~Gg~~~~~~~~~~d~~~~~---~~------d 111 (633)
..++||||||||+.|.-||+-++-+|++|.|+|++....|.++.+ .||....-.....-+++++ .+ .
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkSTKLiHGGVRYLekAi~~lD~~qyrlV~eaL~ER~~ 144 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKSTKLIHGGVRYLEKAISNLDYEQYRLVKEALNERAN 144 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccchhhhcccHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999998776666543 4555321100011122111 00 1
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHHHHHH----CCCcccccCCCcccccccCC-------cccccCCCCccc--eeEEc
Q 046556 112 TVKGSDWLGDQDAIQYMCREAPKAVIELEN----YGLPFSRTEDGKIYQRAFGG-------QSLDFGKGGQAY--RCACA 178 (633)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~----~Gv~f~~~~~g~~~~~~~gg-------~~~~~~~g~~~~--r~~~~ 178 (633)
+++....++.+-.+. -..+.|++- .|+.+-.--.|.-.....-- .-++........ -.++.
T Consensus 145 lle~APhLs~~lPIm------lPvy~wwQvpYyw~G~K~YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga~VYyD 218 (680)
T KOG0042|consen 145 LLEIAPHLSQPLPIM------LPVYKWWQVPYYWVGLKIYDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGAMVYYD 218 (680)
T ss_pred HhhcCccccCCccee------eehhhhhhhhheeecceeeeeeccccccccceeecHHHHHHhCccccccCceeEEEEec
Confidence 111111121110000 012233321 13322111111100000000 000000000000 11222
Q ss_pred cCCchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 179 ADRTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 179 ~~~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
++..-..+.-.+.-.|.++|..+...++|.+|++|+++++.|+.+.|.-+|+.+.|+|+.||-|||-|+.
T Consensus 219 GQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 219 GQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSD 288 (680)
T ss_pred CCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccH
Confidence 2222234555555567789999999999999999888999999999988999999999999999998874
No 136
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.09 E-value=3.4e-10 Score=114.15 Aligned_cols=169 Identities=22% Similarity=0.290 Sum_probs=100.2
Q ss_pred cccccccEEEECCchHHHHHHHHHHhC------CCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcC
Q 046556 43 IVDHTYDAVVVGAGGAGLRAAIGLSEH------GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGS 116 (633)
Q Consensus 43 ~~~~~~DVlIIGgG~AGl~AA~~aa~~------G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~ 116 (633)
....++||+|||+|+|||+||++|.+. .++|.|+||+...+|++.. |.+ + ++..+...+.++-..+
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS--Gav---i---ep~aldEL~P~wke~~ 143 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS--GAV---I---EPGALDELLPDWKEDG 143 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec--cee---e---ccchhhhhCcchhhcC
Confidence 345679999999999999999999873 4689999998877766542 211 1 1112222221211111
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccC--CCCccceeEEccCCchHHHHHHHHHHH
Q 046556 117 DWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFG--KGGQAYRCACAADRTGHALLHTLYGQA 194 (633)
Q Consensus 117 ~~~~~~~~v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~--~g~~~~r~~~~~~~~g~~l~~~l~~~a 194 (633)
.-++.+- ..+.+..|.. + +..+.+.. ........+ .=..++..|-++|
T Consensus 144 apl~t~v--------T~d~~~fLt~---------~--------~~i~vPv~~pm~NhGNYvv-----~L~~~v~wLg~kA 193 (621)
T KOG2415|consen 144 APLNTPV--------TSDKFKFLTG---------K--------GRISVPVPSPMDNHGNYVV-----SLGQLVRWLGEKA 193 (621)
T ss_pred Ccccccc--------cccceeeecc---------C--------ceeecCCCcccccCCcEEE-----EHHHHHHHHHHHH
Confidence 1111110 0000111110 0 00111000 000000000 1146888999999
Q ss_pred HhCCCEEEEEEEEEEEEEccCCcEEEEEEEEc---CCCe-------EEEEEcCeEEEccCCcCCC
Q 046556 195 MKHNTQFFVEYFALDLIMNSDGTCQGVIALNM---EDGT-------LHRFRAASTILATGGYGRA 249 (633)
Q Consensus 195 ~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~---~~G~-------~~~i~A~~VVlAtGg~~~~ 249 (633)
++.|++|+-+..+.+++.|++|.|.|+.+.|. .+|. -..|.|+..|.|-|-.+.+
T Consensus 194 Ee~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 194 EELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred HhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchh
Confidence 99999999999999999989999999988653 2332 1468999999999987754
No 137
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.09 E-value=3.2e-09 Score=116.10 Aligned_cols=65 Identities=23% Similarity=0.254 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhCC-CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 183 GHALLHTLYGQAMKHN-TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 183 g~~l~~~l~~~a~~~g-v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
...+...|.+.+++.| ++++++++|+++..++++.+. +.+.+..+|+...+.|+.||+|+|+++.
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~-v~~~~~~~G~~~~i~A~~VVvaAGg~s~ 247 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWT-VTVKDLKTGEKRTVRAKFVFIGAGGGAL 247 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEE-EEEEEcCCCceEEEEcCEEEECCCcchH
Confidence 3578889999888876 899999999999874444432 4443334564445899999999999873
No 138
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.9e-10 Score=110.54 Aligned_cols=60 Identities=23% Similarity=0.239 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHHhCCCEEEEEEEEEEEEEc-cCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCc
Q 046556 182 TGHALLHTLYGQAMKHNTQFFVEYFALDLIMN-SDGTCQGVIALNMEDGTLHRFRAASTILATGGY 246 (633)
Q Consensus 182 ~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 246 (633)
.|..+...|.+..+++.|.++.-.++++|..- ..+...-|.. .+|.. ++++.||||||+.
T Consensus 264 eGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l---~nGav--LkaktvIlstGAr 324 (520)
T COG3634 264 EGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVEL---ANGAV--LKARTVILATGAR 324 (520)
T ss_pred cchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEe---cCCce--eccceEEEecCcc
Confidence 35678888888899999999988889998761 1233444444 56764 8999999999974
No 139
>PRK06126 hypothetical protein; Provisional
Probab=99.07 E-value=4.7e-09 Score=117.47 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHh-CCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 185 ALLHTLYGQAMK-HNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 185 ~l~~~l~~~a~~-~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
.+...|.+.+++ .+++++++++|+++.. +++.|+ +.+.+..+|+...++||.||.|+|+.+.
T Consensus 127 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~-~~~~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 127 YLEPILLEHAAAQPGVTLRYGHRLTDFEQ-DADGVT-ATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHHhCCCceEEeccEEEEEEE-CCCeEE-EEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 456677777765 4899999999999988 455555 4555556777778999999999998874
No 140
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.07 E-value=9.4e-10 Score=117.45 Aligned_cols=185 Identities=17% Similarity=0.137 Sum_probs=94.3
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCC-CcccccccceeeecCCCCcCCHHH-------HHHHHHhcCC-C
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTR-SHTVAAQGGINAALGNMTEDDWRW-------HMYDTVKGSD-W 118 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~-g~t~~~~Gg~~~~~~~~~~d~~~~-------~~~d~~~~~~-~ 118 (633)
+||+|||||++|+++|+.|+++|.+|+|+||..... ++++...+++..... ..+.+.. .+.++.+... .
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~--~~~~~~~l~~~s~~~~~~l~~~~~~~ 78 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAY--PEDFYTPMMLECYQLWAQLEKEAGTK 78 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeecc--CchhHhHHHHHHHHHHHHHHHHhCCe
Confidence 699999999999999999999999999999975532 222222223221111 1111100 0111111000 0
Q ss_pred CCCHHHHHHHH----HHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEcc---CCchHHHHHHHH
Q 046556 119 LGDQDAIQYMC----REAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAA---DRTGHALLHTLY 191 (633)
Q Consensus 119 ~~~~~~v~~~~----~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~---~~~g~~l~~~l~ 191 (633)
...+.-...++ +......+.+.+.|++........+. ..++..... ......+.. ......+...|.
T Consensus 79 ~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~-~~~P~l~~~-----~~~~~~~~~~~g~i~p~~~~~~l~ 152 (380)
T TIGR01377 79 LHRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLK-QRFPNIRVP-----RNEVGLLDPNGGVLYAEKALRALQ 152 (380)
T ss_pred eEeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHH-HhCCCCcCC-----CCceEEEcCCCcEEcHHHHHHHHH
Confidence 00000000000 11222334455566554321111100 011110000 000011111 112357778888
Q ss_pred HHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 192 GQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 192 ~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
+.+++.|++++.+++|+++.. +++.+ .+.+ .++ .+.|+.||+|+|++..
T Consensus 153 ~~~~~~g~~~~~~~~V~~i~~-~~~~~-~v~~---~~~---~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 153 ELAEAHGATVRDGTKVVEIEP-TELLV-TVKT---TKG---SYQANKLVVTAGAWTS 201 (380)
T ss_pred HHHHHcCCEEECCCeEEEEEe-cCCeE-EEEe---CCC---EEEeCEEEEecCcchH
Confidence 888889999999999999987 45544 3433 344 3899999999998863
No 141
>PRK06185 hypothetical protein; Provisional
Probab=99.07 E-value=2.4e-09 Score=115.40 Aligned_cols=62 Identities=27% Similarity=0.240 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+.+.|.+.+.+. |++++.+++|+++.. ++++++++.+.. .+|+ ..++|+.||.|+|+++.
T Consensus 108 ~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~-~~~~v~~v~~~~-~~g~-~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 108 WDFLDFLAEEASAYPNFTLRMGAEVTGLIE-EGGRVTGVRART-PDGP-GEIRADLVVGADGRHSR 170 (407)
T ss_pred HHHHHHHHHHHhhCCCcEEEeCCEEEEEEE-eCCEEEEEEEEc-CCCc-EEEEeCEEEECCCCchH
Confidence 46777788877664 899999999999998 577888877643 3443 46899999999998874
No 142
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.07 E-value=2.6e-09 Score=116.40 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHh----CC--CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 183 GHALLHTLYGQAMK----HN--TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 183 g~~l~~~l~~~a~~----~g--v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
...+...|.+.+++ .| ++++++++|++|.. +++.+..|.+ .+| .++|+.||+|+|+|+.
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-~~~~~~~V~T---~~G---~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-SNDSLYKIHT---NRG---EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-cCCCeEEEEE---CCC---EEEeCEEEECcChhHH
Confidence 35788889999988 77 78999999999988 5455555544 455 3899999999999873
No 143
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.06 E-value=4.4e-09 Score=120.13 Aligned_cols=60 Identities=20% Similarity=0.117 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY 250 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~ 250 (633)
...++..|.+.+++ |+++++++.|+++.. +++.++ +.+ .+|. .+.|+.||+|+|.++...
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~-~~~~~~-v~t---~~g~--~~~ad~VV~A~G~~s~~l 466 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLER-EDDGWQ-LDF---AGGT--LASAPVVVLANGHDAARF 466 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEE-eCCEEE-EEE---CCCc--EEECCEEEECCCCCcccc
Confidence 35788899999888 999999999999987 455443 332 4554 368999999999987543
No 144
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.04 E-value=2e-08 Score=118.46 Aligned_cols=37 Identities=27% Similarity=0.368 Sum_probs=33.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 82 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~ 82 (633)
...+|+|||||+|||+||..|+++|++|+|+|+....
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3568999999999999999999999999999987543
No 145
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.03 E-value=3.2e-09 Score=113.19 Aligned_cols=57 Identities=11% Similarity=0.202 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..++..+.+.+.+.|++++++++|+++.. +++.+ .+.+ .+| .+.||.||+|+|+++.
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~-~v~~---~~g---~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEA-DGDGV-TVTT---ADG---TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEe-eCCeE-EEEe---CCC---EEEeeEEEEecCcchh
Confidence 56777788888889999999999999987 44432 3332 455 4899999999998864
No 146
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.03 E-value=2.4e-09 Score=109.82 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+.+.|.+.+.+.|++++.+++|+++.. +++.+. +.+ .++ ...++||.||+|+|..+.
T Consensus 91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~-~~~~~~-~~~---~~~-~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 91 DAFDEQLAERAQEAGAELRLGTTVLDVEI-HDDRVV-VIV---RGG-EGTVTAKIVIGADGSRSI 149 (295)
T ss_pred HHHHHHHHHHHHHcCCEEEeCcEEeeEEE-eCCEEE-EEE---cCc-cEEEEeCEEEECCCcchH
Confidence 46778888889889999999999999987 445432 222 222 235899999999998763
No 147
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.03 E-value=2.7e-09 Score=113.25 Aligned_cols=46 Identities=28% Similarity=0.478 Sum_probs=39.0
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccce
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGI 93 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~ 93 (633)
+||+|||||++|+++|+.|+++|.+|+|+|+.....|.|..+.|.+
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~ 46 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQV 46 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceE
Confidence 6999999999999999999999999999999876556555554444
No 148
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.03 E-value=3.5e-09 Score=122.10 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=32.6
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
...+|+|||||+||++||..|+++|++|+|+|+...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 346899999999999999999999999999998643
No 149
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.03 E-value=1.8e-08 Score=106.11 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=51.3
Q ss_pred chHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCc-C
Q 046556 182 TGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGY-G 247 (633)
Q Consensus 182 ~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~-~ 247 (633)
.|..+.+.|.+.+++.|++++.+++|+++.. ++++++++.+ .++....+.||.||||||+| +
T Consensus 261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t---~~g~~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHT---RNHRDIPLRADHFVLASGSFFS 323 (419)
T ss_pred cHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEe---cCCccceEECCEEEEccCCCcC
Confidence 4677888999999999999999999999988 6788888765 23323358999999999998 5
No 150
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.02 E-value=2.2e-09 Score=113.00 Aligned_cols=62 Identities=18% Similarity=0.132 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
..+.+.|.+.+++.|++++.+++++++.. +.+.+.... .+..+|+..+++||.||-|.|..+
T Consensus 111 ~~l~~~L~~~~~~~gv~i~~~~~v~~~~~-d~~~~~~~~-~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 111 PELDRALREEAEERGVDIRFGTRVVSIEQ-DDDGVTVVV-RDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHHHTEEEEESEEEEEEEE-ETTEEEEEE-EETCTCEEEEEEESEEEE-SGTT-
T ss_pred HHHHHhhhhhhhhhhhhheeeeecccccc-ccccccccc-ccccCCceeEEEEeeeecccCccc
Confidence 46778889999999999999999999988 455555433 344578877899999999999776
No 151
>PLN02985 squalene monooxygenase
Probab=99.02 E-value=9.4e-09 Score=113.23 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC
Q 046556 184 HALLHTLYGQAMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA 249 (633)
Q Consensus 184 ~~l~~~l~~~a~~~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 249 (633)
..+...|.+++.+. |++++.+ .+++++. +++.++||.+.+ .+|+...+.||.||.|+|.++..
T Consensus 147 ~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-~~~~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 147 GRFVQRLRQKASSLPNVRLEEG-TVKSLIE-EKGVIKGVTYKN-SAGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred HHHHHHHHHHHHhCCCeEEEee-eEEEEEE-cCCEEEEEEEEc-CCCCEEEEECCEEEECCCCchHH
Confidence 46788888888776 7888755 6888877 567888988754 46776678999999999998853
No 152
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.02 E-value=1.4e-08 Score=110.30 Aligned_cols=65 Identities=23% Similarity=0.136 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHh-CCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 183 GHALLHTLYGQAMK-HNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 183 g~~l~~~l~~~a~~-~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
...+.+.|.+.+.+ .|+++++++.|++|..++++.++ +.+.+..+++...++|+.||+|+|+++.
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~ 248 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAI 248 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence 45788888888864 58999999999999873255443 2322223453335899999999999873
No 153
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.02 E-value=4.2e-09 Score=123.08 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=32.4
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
..+|+|||||||||+||..|+++|++|+|+|+...
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~ 340 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD 340 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence 56899999999999999999999999999999643
No 154
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.01 E-value=1.1e-09 Score=118.92 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=29.0
Q ss_pred cEEEECCchHHHHHHHHHHhC--CCcEEEEeecC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEH--GFNTACITKLF 80 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~~ 80 (633)
.|||||||+||+.||..|++. +.+|+|+|+..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 599999999999999999886 57999999964
No 155
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.01 E-value=4.3e-08 Score=111.73 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=33.3
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 82 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~ 82 (633)
...+|+|||+|+|||+||..|++.|++|+|+|+....
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3568999999999999999999999999999997543
No 156
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.00 E-value=5.1e-09 Score=112.02 Aligned_cols=189 Identities=19% Similarity=0.179 Sum_probs=101.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcC-C------HHH-HHHHHHhcCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTED-D------WRW-HMYDTVKGSD 117 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d-~------~~~-~~~d~~~~~~ 117 (633)
.++||+|||||++|+++|+.|+++|.+|+|+|+.....|++..+.+++.........+ . ... .+........
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEELG 82 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999999999998877777777777766554431100 0 011 1111111110
Q ss_pred ---CCCCHHHHHHHH-------HHHHHHHHHHHHCCCcc---cccCCCcccccccCCcccccCCCCccceeEEccCCchH
Q 046556 118 ---WLGDQDAIQYMC-------REAPKAVIELENYGLPF---SRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGH 184 (633)
Q Consensus 118 ---~~~~~~~v~~~~-------~~~~~~~~~l~~~Gv~f---~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~ 184 (633)
.+.....+.... .......+.++...... ...+.....+. .+..... + .............
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-l~~~~~~---~--a~~~~~~~~~~p~ 156 (387)
T COG0665 83 TGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPA-LGPDFVC---G--GLFDPTGGHLDPR 156 (387)
T ss_pred cchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCC-CCcccce---e--eEecCCCCcCCHH
Confidence 011111111111 01122222333333221 00000000000 0000000 0 0000001112236
Q ss_pred HHHHHHHHHHHhCCC-EEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 185 ALLHTLYGQAMKHNT-QFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 185 ~l~~~l~~~a~~~gv-~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
.++..|.+.+++.|+ .+..++.++.+.. +. ++.+|.+ .+|+ +.|+.||+|+|+++.
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~-~~-~~~~v~t---~~g~---i~a~~vv~a~G~~~~ 213 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLER-DG-RVVGVET---DGGT---IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEe-cC-cEEEEEe---CCcc---EEeCEEEEcCchHHH
Confidence 788899999999994 5666888888877 33 6666665 4564 899999999998874
No 157
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.99 E-value=3.5e-09 Score=104.65 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEE-ccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIM-NSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSA 253 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~-d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~ 253 (633)
...++.|...+++.|+.++.+..|+.+.. ++++..++|.+ .+|.. +.||++|+++|.|-+.++++
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~T---t~gs~--Y~akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQT---TDGSI--YHAKKIIFTVGAWINKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEe---ccCCe--eecceEEEEecHHHHhhcCc
Confidence 45678899999999999999998887753 35566677766 45654 89999999999998777665
No 158
>PRK02106 choline dehydrogenase; Validated
Probab=98.99 E-value=3.3e-09 Score=118.84 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=42.7
Q ss_pred hCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 196 KHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 196 ~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
+.|++|+.++.|++|+. ++++++||.+.+ ..+....+.|+.||||+|++..
T Consensus 213 ~~nl~i~~~a~V~rI~~-~~~~a~GV~~~~-~~~~~~~~~ak~VILaaGai~T 263 (560)
T PRK02106 213 RPNLTIVTHALTDRILF-EGKRAVGVEYER-GGGRETARARREVILSAGAINS 263 (560)
T ss_pred CCCcEEEcCCEEEEEEE-eCCeEEEEEEEe-CCcEEEEEeeeeEEEccCCCCC
Confidence 56899999999999999 578999999876 3455556788999999999864
No 159
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.98 E-value=8.1e-08 Score=111.30 Aligned_cols=36 Identities=28% Similarity=0.480 Sum_probs=32.8
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
...+|+|||||+|||+||..|++.|++|+|+|+...
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 456999999999999999999999999999998643
No 160
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.98 E-value=3.4e-09 Score=102.33 Aligned_cols=31 Identities=42% Similarity=0.627 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
||+|||||+||+.||.+|++.|.+|+|+|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecc
Confidence 7999999999999999999999999999875
No 161
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.97 E-value=1.3e-08 Score=109.21 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+++.|++++.+++|+++.. +++.+. +.+ .+|+ .+.|+.||.|+|..+.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~~~v~-v~~---~~g~--~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQ-DADRVR-LRL---DDGR--RLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEe-cCCeEE-EEE---CCCC--EEEeCEEEEecCCCch
Confidence 46778888888889999999999999987 444432 333 4565 4899999999998763
No 162
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.97 E-value=1e-08 Score=110.78 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+.+.|.+.+.+. +++++++++++++.. +++.+. +.+. .+++...++||.||.|+|..+.
T Consensus 121 ~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~-~~~~~~-v~~~--~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 121 QVLLEALQEFLQSCPNITWLCPAEVVSVEY-QQDAAT-VTLE--IEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEe-cCCeeE-EEEc--cCCcceEEeeeEEEEeCCCCch
Confidence 35677788877765 799999999999977 444332 4332 2344446999999999998774
No 163
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.95 E-value=2.6e-07 Score=101.27 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=33.6
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 82 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~ 82 (633)
...+|+|||+|+||++||..|++.|++|+|+|+....
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999997543
No 164
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.93 E-value=3.5e-08 Score=105.89 Aligned_cols=33 Identities=27% Similarity=0.420 Sum_probs=29.5
Q ss_pred cccEEEECCchHHHHHHHHHHhCCC--cEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGF--NTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~--~V~vlEk~ 79 (633)
+.+|||||||+||+.||..|++.|. +|+|+++.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e 37 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDE 37 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCC
Confidence 3479999999999999999999876 79999985
No 165
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.93 E-value=3.1e-09 Score=115.93 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=28.7
Q ss_pred cEEEECCchHHHHHHHHHHhCC--CcEEEEeecC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHG--FNTACITKLF 80 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G--~~V~vlEk~~ 80 (633)
.|||||||+||++||..|++.+ .+|+|+|+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 5999999999999999999875 5899999964
No 166
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.93 E-value=2.3e-08 Score=108.42 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=34.6
Q ss_pred cccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 43 IVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 43 ~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
+....+||+||||||||++||+.|+++|++|+|+||..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44567999999999999999999999999999999964
No 167
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.92 E-value=1.6e-08 Score=108.17 Aligned_cols=59 Identities=17% Similarity=0.107 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHN-TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~g-v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+.+.+ ++++.+++|+.+.. +++.++ +.. +. +|+ ++.|+.||-|.|..+.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~-~~~~v~-v~l-~~-dG~--~~~a~llVgADG~~S~ 163 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQ-DGDGVT-VTL-SF-DGE--TLDADLLVGADGANSA 163 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEE-cCCceE-EEE-cC-CCc--EEecCEEEECCCCchH
Confidence 578888999888775 99999999999998 556666 444 22 676 6999999999998773
No 168
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.91 E-value=2.5e-08 Score=115.69 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=32.9
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
...+|+|||||+||++||+.|++.|++|+|+|+...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 357999999999999999999999999999998743
No 169
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.90 E-value=3.8e-08 Score=105.55 Aligned_cols=62 Identities=18% Similarity=0.073 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+.+.|++.+.+.|++++++++++++.. .++..+.|.+. .+|+...++||.||-|.|..+.
T Consensus 103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~-~~~~~~~V~~~--~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 103 TEVTRDLMAARLAAGGPIRFEASDVALHD-FDSDRPYVTYE--KDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeEEEEEe-cCCCceEEEEE--cCCeEEEEEeCEEEECCCCCCc
Confidence 35667788877888999999999999875 23333345442 3677667999999999997774
No 170
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.90 E-value=2e-07 Score=98.17 Aligned_cols=34 Identities=29% Similarity=0.230 Sum_probs=31.6
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
.||+|||||++|+.||+.|++.|++|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 4899999999999999999999999999998643
No 171
>PRK06834 hypothetical protein; Provisional
Probab=98.89 E-value=2.2e-08 Score=109.97 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+++.|++++.+++++++.. +++.+. +.+ .+|+ .++|+.||.|+|+.+.
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~-~~~~v~-v~~---~~g~--~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQ-DDTGVD-VEL---SDGR--TLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEE-cCCeEE-EEE---CCCC--EEEeCEEEEecCCCCC
Confidence 35667777888888999999999999988 444332 222 4554 5899999999998874
No 172
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.89 E-value=2.3e-08 Score=107.68 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+++.|++++.+++++++.. +++.+. +.+ .+|+ .+.||.||.|+|.++.
T Consensus 112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~-~~~~v~-v~~---~~g~--~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 112 RVVQDALLERLHDSDIGLLANARLEQMRR-SGDDWL-LTL---ADGR--QLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHHhcCCCEEEcCCEEEEEEE-cCCeEE-EEE---CCCC--EEEeCEEEEecCCCch
Confidence 45667888888888999999999999987 344332 332 4564 4899999999998874
No 173
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.89 E-value=3e-08 Score=105.97 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHN-TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~g-v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+.+.+ ++++.++.|+++.. +++.+. +.. .+|+. +.+|.||.|+|..+.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~-~~~~~~-v~~---~~g~~--~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPR-HSDHVE-LTL---DDGQQ--LRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEe-cCCeeE-EEE---CCCCE--EEeeEEEEeCCCCCH
Confidence 467888888888887 99999999999987 455432 333 46653 899999999997763
No 174
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.88 E-value=8.8e-08 Score=104.17 Aligned_cols=66 Identities=11% Similarity=0.106 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEc-cC--CcEEEEEEEEcCCCe-EEEEEcCeEEEccCCcCCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMN-SD--GTCQGVIALNMEDGT-LHRFRAASTILATGGYGRA 249 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d-~~--g~v~Gv~~~~~~~G~-~~~i~A~~VVlAtGg~~~~ 249 (633)
..++..|.+.++++||+|+++++|++|+.+ ++ ++|+|+.+.....++ .....+|.||+++||+...
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 578889999999999999999999999984 23 689999886312222 2334578999999999754
No 175
>PRK08244 hypothetical protein; Provisional
Probab=98.88 E-value=3.7e-08 Score=108.89 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 185 ALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 185 ~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
.+...|.+.+++.|++++.+++++++.. +++.+. +.+.+ .+| ...++|+.||.|+|..+.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~-~~~~v~-v~~~~-~~g-~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQ-DGDGVE-VVVRG-PDG-LRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEE-cCCeEE-EEEEe-CCc-cEEEEeCEEEECCCCChH
Confidence 4566677777788999999999999987 444443 33332 345 346899999999998773
No 176
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.87 E-value=5.3e-08 Score=104.25 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHN-TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~g-v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+++.| ++++ ++.++++.. +++.+ .+.+ .+|+ .++|+.||.|+|.++.
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~-~~~~~-~v~~---~~g~--~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEV-DPDAA-TLTL---ADGQ--VLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEe-cCCeE-EEEE---CCCC--EEEeeEEEEeCCCCch
Confidence 567788888888887 9988 889999977 44443 2333 4554 4899999999998774
No 177
>PRK07045 putative monooxygenase; Reviewed
Probab=98.87 E-value=3.5e-08 Score=105.73 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMK-HNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~-~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+.+.|.+++.+ .|++++++++++++..++++.++.+.+ .+|+ ++.++.||.|+|..+.
T Consensus 106 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 106 EQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTL---SDGE--RVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEe---CCCC--EEECCEEEECCCCChH
Confidence 3566777777754 589999999999998855565556654 4565 4899999999998873
No 178
>PRK06184 hypothetical protein; Provisional
Probab=98.87 E-value=4.4e-08 Score=108.51 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 185 ALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 185 ~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
.+...|.+.+.+.|++++.+++++++.. +++.|+. .+.+..++ ..++||.||.|+|+.+.
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~-~~~~v~v-~~~~~~~~--~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQ-DADGVTA-RVAGPAGE--ETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEE-cCCcEEE-EEEeCCCe--EEEEeCEEEECCCCchH
Confidence 4566778888888999999999999988 4444432 22221222 36999999999998874
No 179
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.86 E-value=6.1e-08 Score=108.26 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhC-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 185 ALLHTLYGQAMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 185 ~l~~~l~~~a~~~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
.+.+.|.+.+.+. |++++.+++|+++..+ ++.|+ +.+.+ .+|+..+++||.||.|+|..+.
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~-~~~v~-v~~~~-~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQD-DDGVT-VTLTD-ADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEc-CCeEE-EEEEc-CCCCEEEEEEEEEEecCCCchh
Confidence 4556677777664 8999999999999884 44443 33332 3676667999999999998874
No 180
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.84 E-value=4.8e-08 Score=104.72 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEc-cCCcEEEEEEEEcC----CCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMN-SDGTCQGVIALNME----DGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d-~~g~v~Gv~~~~~~----~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+-+.|.+++.+.|++++..+ ++++..+ +.+...++.+.... +|+...++|+.||.|+|..+.
T Consensus 93 ~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~ 161 (398)
T TIGR02028 93 EVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSR 161 (398)
T ss_pred HHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchH
Confidence 4566778888999999998775 7776531 22344555543211 255457999999999997763
No 181
>PRK09126 hypothetical protein; Provisional
Probab=98.84 E-value=6e-08 Score=104.01 Aligned_cols=35 Identities=40% Similarity=0.461 Sum_probs=32.9
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
++||+|||||++|+++|+.|+++|++|+|+||...
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 58999999999999999999999999999999754
No 182
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.84 E-value=6.3e-08 Score=103.83 Aligned_cols=58 Identities=21% Similarity=0.183 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+.+. |++++.++.++++.. +++.+ .+.+ .+|+ .++|+.||.|+|..+.
T Consensus 112 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~-~~~~~-~v~~---~~g~--~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 112 RVLQLALWQALEAHPNVTLRCPASLQALQR-DDDGW-ELTL---ADGE--EIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHHcCCCcEEEcCCeeEEEEE-cCCeE-EEEE---CCCC--EEEeCEEEEeCCCCch
Confidence 46677788887776 999999999999987 34432 2332 4554 4899999999998774
No 183
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.84 E-value=1.7e-08 Score=101.33 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=93.7
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHH
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
.+..+||||||+|.+|.+.|+.|++.|.+|.||||.-.. ++...-+++.-|..+
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~E----------------------PdRivGEllQPGG~~---- 95 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSE----------------------PDRIVGELLQPGGYL---- 95 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccccc----------------------chHHHHHhcCcchhH----
Confidence 356799999999999999999999999999999996321 111122222222111
Q ss_pred HHHHHHHH-HHHHHHHHHH---CCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHHHHHHhC-C
Q 046556 124 AIQYMCRE-APKAVIELEN---YGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKH-N 198 (633)
Q Consensus 124 ~v~~~~~~-~~~~~~~l~~---~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~~~a~~~-g 198 (633)
.+.+- ..++++.++. .|..... +|+-..-.++-.+ +.. ...-|..| ...+++.|++++... +
T Consensus 96 ---~L~~LGl~Dcve~IDAQ~v~Gy~ifk--~gk~v~~pyP~~~--f~~-d~~GrsFh-----nGRFvq~lR~ka~slpN 162 (509)
T KOG1298|consen 96 ---ALSKLGLEDCVEGIDAQRVTGYAIFK--DGKEVDLPYPLKN--FPS-DPSGRSFH-----NGRFVQRLRKKAASLPN 162 (509)
T ss_pred ---HHHHhCHHHHhhcccceEeeeeEEEe--CCceeeccCCCcC--CCC-Ccccceee-----ccHHHHHHHHHHhcCCC
Confidence 00000 0112222211 2221111 1111110000000 000 00012222 236788888887654 7
Q ss_pred CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC
Q 046556 199 TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA 249 (633)
Q Consensus 199 v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 249 (633)
|++. +-.|.+|+. ++|.|.||...+ ..|+..+..|...|+|.|-|++.
T Consensus 163 V~~e-eGtV~sLle-e~gvvkGV~yk~-k~gee~~~~ApLTvVCDGcfSnl 210 (509)
T KOG1298|consen 163 VRLE-EGTVKSLLE-EEGVVKGVTYKN-KEGEEVEAFAPLTVVCDGCFSNL 210 (509)
T ss_pred eEEe-eeeHHHHHh-ccCeEEeEEEec-CCCceEEEecceEEEecchhHHH
Confidence 8864 456899998 788999999987 45555788899999999999864
No 184
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.83 E-value=7.8e-09 Score=110.20 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=28.2
Q ss_pred ccEEEECCchHHHHHHHHHHhC--CCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEH--GFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~ 79 (633)
.+|||||||+||+.+|..+.+. ..+|+|+++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~ 36 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITAD 36 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCC
Confidence 4899999999999999999875 4589999985
No 185
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.83 E-value=5.1e-08 Score=104.98 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+.+.|++++.+++|+++.. +++.+. +.+ .+|+ .+.||.||.|+|..+.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~-~~~~v~-v~~---~~g~--~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFET-RDEGVT-VTL---SDGS--VLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEE-cCCEEE-EEE---CCCC--EEEeCEEEEcCCCChH
Confidence 57788898888888999999999999987 444432 333 4564 4899999999997663
No 186
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.83 E-value=7.7e-08 Score=103.00 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEc---CCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNM---EDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~---~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+.+.|.+++.+.|++++.. .|+++.. +++.+ .+.+.+. .+|+...++|+.||.|+|..+.
T Consensus 92 ~~fd~~L~~~a~~~G~~v~~~-~v~~v~~-~~~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 92 EVFDSYLRERAQKAGAELIHG-LFLKLER-DRDGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred HHHHHHHHHHHHhCCCEEEee-EEEEEEE-cCCeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 467778888888899999765 5899877 44443 3444321 1334457999999999997763
No 187
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.83 E-value=5.2e-07 Score=102.56 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=33.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 82 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~ 82 (633)
...+|+|||+|++||+||..|++.|++|+|+|+....
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 3568999999999999999999999999999997544
No 188
>PRK07190 hypothetical protein; Provisional
Probab=98.83 E-value=4.8e-08 Score=107.18 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 185 ALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 185 ~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
.+...|.+.+++.|++++.+++|+++..+ ++.++ +.+ .+|+ .++|+.||.|+|+.+
T Consensus 110 ~le~~L~~~~~~~Gv~v~~~~~v~~l~~~-~~~v~-v~~---~~g~--~v~a~~vVgADG~~S 165 (487)
T PRK07190 110 YVEKLLDDKLKEAGAAVKRNTSVVNIELN-QAGCL-TTL---SNGE--RIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeeE-EEE---CCCc--EEEeCEEEECCCCCH
Confidence 45556777788889999999999999884 44332 122 3554 589999999999876
No 189
>PRK11445 putative oxidoreductase; Provisional
Probab=98.82 E-value=7.3e-08 Score=101.63 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+ +.+.|++++.++.++++.. +++.+ .+.+. .+|+...++|+.||.|+|..+.
T Consensus 99 ~~~~~~L~~-~~~~gv~v~~~~~v~~i~~-~~~~~-~v~~~--~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 99 HKFDLWLKS-LIPASVEVYHNSLCRKIWR-EDDGY-HVIFR--ADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred HHHHHHHHH-HHhcCCEEEcCCEEEEEEE-cCCEE-EEEEe--cCCcEEEEEeCEEEECCCCCcH
Confidence 344455554 4567899999999999987 34432 23332 3565556899999999998774
No 190
>PRK06847 hypothetical protein; Provisional
Probab=98.81 E-value=1.1e-07 Score=101.26 Aligned_cols=60 Identities=22% Similarity=0.137 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA 249 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 249 (633)
...+.+.|.+.+.+.|++++.++.|+++.. +++.+ .+.+ .+|+ .+.||.||.|+|.++..
T Consensus 106 r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~-~~~~~-~v~~---~~g~--~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 106 RPALARILADAARAAGADVRLGTTVTAIEQ-DDDGV-TVTF---SDGT--TGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHHHHHhCCEEEeCCEEEEEEE-cCCEE-EEEE---cCCC--EEEcCEEEECcCCCcch
Confidence 356778888888888999999999999977 34433 2333 4565 38899999999987743
No 191
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.81 E-value=8.7e-08 Score=104.07 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHhCCCE--EEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 183 GHALLHTLYGQAMKHNTQ--FFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~--i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
+..+.+.|...++..|+. |.++++|+++.. .+++. -|.+.+ .++......+|+||+|||.++
T Consensus 110 ~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~-~~~~w-~V~~~~-~~~~~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 110 HREVLAYLQDFAREFKIEEMVRFETEVVRVEP-VDGKW-RVQSKN-SGGFSKDEIFDAVVVCNGHYT 173 (461)
T ss_pred HHHHHHHHHHHHHHcCCcceEEecCEEEEEee-cCCeE-EEEEEc-CCCceEEEEcCEEEEeccCCC
Confidence 467888899999888987 889999999987 44432 233322 223334567899999999765
No 192
>PRK13984 putative oxidoreductase; Provisional
Probab=98.81 E-value=5.2e-07 Score=102.22 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=33.9
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTR 83 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~ 83 (633)
...+|+|||+|+||++||..|+++|++|+|+|+....+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g 319 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG 319 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 45689999999999999999999999999999975543
No 193
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.81 E-value=1.4e-08 Score=117.52 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=28.1
Q ss_pred cEEEECCchHHHHHHHHHHhC----CCcEEEEeecC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEH----GFNTACITKLF 80 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~----G~~V~vlEk~~ 80 (633)
.|||||+|+||+.+|..+.+. +++|+|+++.+
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~ 40 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEP 40 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCC
Confidence 699999999999999999764 47899999864
No 194
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.80 E-value=8.7e-08 Score=102.48 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
...+..+|...|++.|+.|++++.|++|.. +.+++.||.+ ..|. |++..||-|||-|++
T Consensus 186 P~~lC~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT---~~G~---iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 186 PAGLCQALARAASALGALVIENCPVTGLHV-ETDKFGGVET---PHGS---IETECVVNAAGVWAR 244 (856)
T ss_pred HHHHHHHHHHHHHhcCcEEEecCCcceEEe-ecCCccceec---cCcc---eecceEEechhHHHH
Confidence 467889999999999999999999999998 6677778877 4563 899999999998874
No 195
>PLN02785 Protein HOTHEAD
Probab=98.80 E-value=1.3e-08 Score=113.49 Aligned_cols=58 Identities=21% Similarity=0.446 Sum_probs=42.3
Q ss_pred HHHHHHhCCCEEEEEEEEEEEEEccC---CcEEEEEEEEcCCCeEEE-E----EcCeEEEccCCcCC
Q 046556 190 LYGQAMKHNTQFFVEYFALDLIMNSD---GTCQGVIALNMEDGTLHR-F----RAASTILATGGYGR 248 (633)
Q Consensus 190 l~~~a~~~gv~i~~~~~v~~L~~d~~---g~v~Gv~~~~~~~G~~~~-i----~A~~VVlAtGg~~~ 248 (633)
+...+.+.|++++.++.|++|+.|++ ++++||++.+ .+|..+. + .++.||||+|+++.
T Consensus 226 l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~-~~g~~~~~~~~~~~~~eVILsAGai~s 291 (587)
T PLN02785 226 LLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKD-ENGNQHQAFLSNNKGSEIILSAGAIGS 291 (587)
T ss_pred HHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEE-CCCceEEEEeecccCceEEecccccCC
Confidence 33444567899999999999999532 3899999876 3454333 2 23679999999873
No 196
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.80 E-value=9.5e-09 Score=112.33 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=32.7
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
...+|+|||||+||++||..|++.|++|+|+|+...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 456899999999999999999999999999998643
No 197
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.80 E-value=1.4e-07 Score=105.27 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=42.5
Q ss_pred HHHH-hCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 192 GQAM-KHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 192 ~~a~-~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
..++ +.|++|+.++.|++|+. ++++++||.+.+ .++....+.||.||||+|++.
T Consensus 201 ~~a~~r~nl~i~~~~~V~rI~~-~~~ra~GV~~~~-~~~~~~~~~ak~VIlaAGai~ 255 (532)
T TIGR01810 201 HPAMKRPNLEVQTRAFVTKINF-EGNRATGVEFKK-GGRKEHTEANKEVILSAGAIN 255 (532)
T ss_pred hhhccCCCeEEEeCCEEEEEEe-cCCeEEEEEEEe-CCcEEEEEEeeeEEEccCCCC
Confidence 3344 56899999999999999 578999999865 233344567899999999865
No 198
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.79 E-value=9.5e-08 Score=102.29 Aligned_cols=62 Identities=16% Similarity=0.029 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+.+.|+.+++++.++.+.. .++..++|.+. .+|+...++||.||-|.|..+.
T Consensus 103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~-~~~~~~~V~~~--~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 103 TEVTRDLMEAREAAGLTTVYDADDVRLHD-LAGDRPYVTFE--RDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHHHHHhcCCeEEEeeeeEEEEe-cCCCccEEEEE--ECCeEEEEEeCEEEECCCCchh
Confidence 35667788888888999999988888765 23323345542 2676667999999999998874
No 199
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.78 E-value=1.1e-07 Score=101.99 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC
Q 046556 184 HALLHTLYGQAMKHN-TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA 249 (633)
Q Consensus 184 ~~l~~~l~~~a~~~g-v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 249 (633)
..+...|.+.+.+.+ ++++.++.++++.. +++.+. +.. .+|+ .+.||.||.|+|..+..
T Consensus 109 ~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~-~~~~v~-v~~---~~g~--~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 109 ADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ-DGDGVT-VFD---QQGN--RWTGDALIGCDGVKSVV 168 (396)
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCEEEEEec-CCCceE-EEE---cCCC--EEecCEEEECCCcChHH
Confidence 457778888887764 99999999999987 444332 322 4564 38999999999988754
No 200
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.78 E-value=2.5e-07 Score=91.30 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCc
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGY 246 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 246 (633)
|-.+.+.|..+.++.|+.++.+-.|.+... .+++|+.+.+. +....-++|+..|||||+|
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~tr---n~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTR---NHADIPLRADFYVLASGSF 316 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEec---ccccCCCChhHeeeecccc
Confidence 455677888888999999999999999988 78999998885 4444568999999999986
No 201
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.78 E-value=9.9e-08 Score=101.61 Aligned_cols=58 Identities=9% Similarity=0.153 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCC-CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC
Q 046556 184 HALLHTLYGQAMKHN-TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA 249 (633)
Q Consensus 184 ~~l~~~l~~~a~~~g-v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 249 (633)
..+...|.+++.+.+ ++++.+++++++.. +++.+. +.+ .++ .++||.||.|.|..+..
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~-~~~~v~-v~~---~~~---~~~adlvIgADG~~S~v 162 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVIS-HNDYSI-IKF---DDK---QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEE-cCCeEE-EEE---cCC---EEeeCEEEEeCCCCchh
Confidence 577888888888774 89999999999987 444432 333 334 48999999999988743
No 202
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.77 E-value=1.4e-06 Score=95.19 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=33.3
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 82 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~ 82 (633)
...+|+|||+|++|++||..|++.|++|+|+|+....
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 4568999999999999999999999999999997543
No 203
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.76 E-value=4.5e-07 Score=100.22 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
..+.+.|.+.+++.|++|++++.|++|.. +++++.||.+ .+|+. +.|+.||+|+|.+.
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~---~~g~~--~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKL---ADGEK--IYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEe---CCCCE--EEcCEEEECCChHH
Confidence 57888999999999999999999999998 5788888877 45653 78999999999764
No 204
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.76 E-value=9.6e-08 Score=102.06 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 184 HALLHTLYGQAMK-HNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 184 ~~l~~~l~~~a~~-~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
..+.+.|.+.+.+ .|++++.+++|+++.. +++.+ .+.+ .+|+ .+.||.||.|+|..+
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~-~~~~~-~v~~---~~g~--~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIR-NQDYV-RVTL---DNGQ--QLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEE-cCCeE-EEEE---CCCC--EEEeeEEEEecCCCh
Confidence 5678888888887 4999999999999987 34433 2332 4554 489999999999775
No 205
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.75 E-value=1.8e-07 Score=99.94 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=32.1
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
++||+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 4899999999999999999999999999999864
No 206
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.74 E-value=1.4e-06 Score=94.31 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=29.6
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
..+|||||||.||+.+|..|...+.+|+||++.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~ 42 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPR 42 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCC
Confidence 457999999999999999998777899999985
No 207
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.73 E-value=1.2e-07 Score=103.77 Aligned_cols=53 Identities=13% Similarity=0.208 Sum_probs=45.6
Q ss_pred hCCCEEEEEEEEEEEEEccC--CcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 196 KHNTQFFVEYFALDLIMNSD--GTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 196 ~~gv~i~~~~~v~~L~~d~~--g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+++++.++.|++|+.|++ ++|+||.+.+..+|+.+.++|+.||||+|+...
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIet 280 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHN 280 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhh
Confidence 44699999999999998654 479999999865788888999999999999874
No 208
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.73 E-value=3.2e-08 Score=95.67 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 182 TGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 182 ~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
.+..+.+.|...+++.+++++++++|+++..+ +++ .-+.+ .++ ..++|+.||+|||.++.
T Consensus 80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~-~~~-w~v~~---~~~--~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRD-GDG-WTVTT---RDG--RTIRADRVVLATGHYSH 139 (203)
T ss_dssp BHHHHHHHHHHHHHHTTGGEETS--EEEEEEE-TTT-EEEEE---TTS---EEEEEEEEE---SSCS
T ss_pred CHHHHHHHHHHHHhhcCcccccCCEEEEEEEe-ccE-EEEEE---Eec--ceeeeeeEEEeeeccCC
Confidence 34677788888888899999999999999984 444 22333 566 35889999999997653
No 209
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.73 E-value=1.6e-07 Score=100.52 Aligned_cols=37 Identities=38% Similarity=0.522 Sum_probs=33.8
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
+..+||+|||||++|+++|+.|+++|.+|+|+|+...
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 4568999999999999999999999999999999743
No 210
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.73 E-value=4.5e-07 Score=93.13 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
..+..++.+-+++.|.+|+++..|.+|+. ++|+++||.+ .+|+. ++++.||--++-|.
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Ill-d~gka~GV~L---~dG~e--v~sk~VvSNAt~~~ 321 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILL-DSGKAVGVRL---ADGTE--VRSKIVVSNATPWD 321 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheec-cCCeEEEEEe---cCCcE--EEeeeeecCCchHH
Confidence 36777888889999999999999999999 5799999998 57865 78888888877654
No 211
>PRK08013 oxidoreductase; Provisional
Probab=98.72 E-value=2.4e-07 Score=99.61 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+.+. |++++.+++|+++..+ ++.+ -+.+ .+|+ .++||.||-|.|..+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v-~v~~---~~g~--~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 111 SVIHYALWQKAQQSSDITLLAPAELQQVAWG-ENEA-FLTL---KDGS--MLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCeE-EEEE---cCCC--EEEeeEEEEeCCCCcH
Confidence 45677888888775 8999999999999874 3333 2222 4565 4899999999998774
No 212
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.69 E-value=1.9e-07 Score=102.51 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGG 245 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 245 (633)
..+.+.|.+.+++.|++|+++++|.+|++ ++|+.+++.. .+| ..+.+|.||.+..-
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~---~~g--~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRT---SDG--ENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEec---ccc--ceeccceeEecCch
Confidence 57899999999999999999999999999 7787555544 445 45889988888775
No 213
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.69 E-value=1.8e-07 Score=106.38 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=32.7
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
...+|+|||+|+||++||..|++.|++|+|+|+...
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 346899999999999999999999999999998644
No 214
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.69 E-value=7.6e-08 Score=101.54 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=32.5
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
...+|+|||+|++|+.+|..|++.|.+|+|+|+...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 345899999999999999999999999999999644
No 215
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.69 E-value=2.5e-07 Score=91.59 Aligned_cols=55 Identities=31% Similarity=0.489 Sum_probs=44.9
Q ss_pred ccccccEEEECCchHHHHHHHHHHhC----CCcEEEEeecCC-CCCcccccccceeeecC
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEH----GFNTACITKLFP-TRSHTVAAQGGINAALG 98 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~----G~~V~vlEk~~~-~~g~t~~~~Gg~~~~~~ 98 (633)
+...+||+|||||..|.+.|+.|.++ |++|+|+|+... ..++|..+.||++.-.+
T Consensus 83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS 142 (509)
T KOG2853|consen 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS 142 (509)
T ss_pred cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecc
Confidence 34579999999999999999999874 799999999754 34566777899987654
No 216
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.68 E-value=2.2e-06 Score=91.00 Aligned_cols=56 Identities=18% Similarity=0.118 Sum_probs=37.8
Q ss_pred cCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCC
Q 046556 399 GGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPG 467 (633)
Q Consensus 399 GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~ 467 (633)
|++.+|+..+ .+++||+||+|||+ .+.... .......|...|+++|+++...+.+.
T Consensus 258 g~i~vd~~l~---------~~~~~~Iya~GD~~--~~~~~~--~~~~~~~A~~~g~~~a~ni~~~l~g~ 313 (364)
T TIGR03169 258 GFLRVDPTLQ---------SLSHPHVFAAGDCA--VITDAP--RPKAGVYAVRQAPILAANLRASLRGQ 313 (364)
T ss_pred CeEEECCccc---------cCCCCCEEEeeeee--ecCCCC--CCCchHHHHHhHHHHHHHHHHHhcCC
Confidence 5666665544 13899999999997 332211 11233467889999999998887653
No 217
>PRK09897 hypothetical protein; Provisional
Probab=98.68 E-value=6.8e-07 Score=98.15 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=31.3
Q ss_pred ccEEEECCchHHHHHHHHHHhCC--CcEEEEeecCCCCCc
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHG--FNTACITKLFPTRSH 85 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G--~~V~vlEk~~~~~g~ 85 (633)
.+|+|||+|++|+++|.+|.+.+ .+|+|+|+....+.+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G 41 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVG 41 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcc
Confidence 36999999999999999998864 589999996544433
No 218
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.68 E-value=1.7e-07 Score=100.29 Aligned_cols=58 Identities=19% Similarity=0.108 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
...+.+.|.+.+.+.|++++ ...|+++.. +++....+.+ .+|+ .++|+.||.|+|..+
T Consensus 84 ~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~-~~~~~~~v~~---~~g~--~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 84 STRLHEELLQKCPEGGVLWL-ERKAIHAEA-DGVALSTVYC---AGGQ--RIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHHhcCcEEE-ccEEEEEEe-cCCceeEEEe---CCCC--EEEeCEEEECCCCch
Confidence 36788888888888899886 557888876 3333334443 4553 489999999999876
No 219
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.67 E-value=9.5e-08 Score=110.77 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=33.8
Q ss_pred HHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 194 AMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 194 a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
+.+.|++++.++.|+.+.. +...| .+ .+|+ .+.+|.+|||||+...
T Consensus 64 ~~~~gv~~~~g~~V~~Id~-~~k~V---~~---~~g~--~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDT-DQKQV---IT---DAGR--TLSYDKLILATGSYPF 109 (785)
T ss_pred HHHCCCEEEcCCeEEEEEC-CCCEE---EE---CCCc--EeeCCEEEECCCCCcC
Confidence 4567999999999999976 33332 22 4554 4899999999998653
No 220
>PRK07538 hypothetical protein; Provisional
Probab=98.67 E-value=3.6e-07 Score=98.72 Aligned_cols=63 Identities=16% Similarity=-0.000 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHh-CC-CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMK-HN-TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~-~g-v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+.+ .| .+++.+++|+++..++++.++. +.+..+|+..+++||.||-|.|..+.
T Consensus 102 ~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~--~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 102 GELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVF--LGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEE--EeccCCCccceEEeeEEEECCCCCHH
Confidence 4667778877765 46 4799999999998744443332 22323455567999999999998774
No 221
>PRK07236 hypothetical protein; Provisional
Probab=98.66 E-value=5.6e-07 Score=96.29 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=32.0
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
..||+|||||++||++|+.|++.|++|+|+||..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4789999999999999999999999999999974
No 222
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.64 E-value=5.6e-07 Score=100.81 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=33.5
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
+..+||+|||+|++||++|+.|++.|.+|+|+||..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 356899999999999999999999999999999974
No 223
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.63 E-value=6e-07 Score=96.35 Aligned_cols=34 Identities=35% Similarity=0.539 Sum_probs=31.9
Q ss_pred ccccEEEECCchHHHHHHHHHHhC---CCcEEEEeec
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEH---GFNTACITKL 79 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~---G~~V~vlEk~ 79 (633)
..+||+|||||+||+++|+.|+++ |.+|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 358999999999999999999998 9999999995
No 224
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.63 E-value=5.9e-07 Score=97.67 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhCC---CEEEEEEEEEEEEEc-----cCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC
Q 046556 184 HALLHTLYGQAMKHN---TQFFVEYFALDLIMN-----SDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA 249 (633)
Q Consensus 184 ~~l~~~l~~~a~~~g---v~i~~~~~v~~L~~d-----~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 249 (633)
..+...|.+.+.+.+ ++++++++|+++..+ +++.-+.+.+ .+|+ .++|+.||.|.|..+..
T Consensus 117 ~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~---~~g~--~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 117 DNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITL---SDGQ--VLYTKLLIGADGSNSNV 185 (437)
T ss_pred HHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEE---cCCC--EEEeeEEEEecCCCChh
Confidence 456677888777764 999999999999752 1222223333 4665 49999999999988743
No 225
>PRK07208 hypothetical protein; Provisional
Probab=98.62 E-value=1.4e-06 Score=95.99 Aligned_cols=62 Identities=19% Similarity=0.118 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCc
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGY 246 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 246 (633)
..+.+.|.+.+++.|++|+++++|++|..++++.++++.. +..+|+...+.||.||+|+-..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~-~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVV-NDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEE-EcCCCCEEEEEcCEEEECCCHH
Confidence 4678889888888999999999999999843444444443 3235655568999999998754
No 226
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.62 E-value=6e-07 Score=96.72 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+...|.+.+.+. |++++.+++|+++.. +++.+ .+.+ .+|+ .++||.||.|.|..+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~-~~~~~-~v~~---~~g~--~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 111 RVIQLALLEQVQKQDNVTLLMPARCQSIAV-GESEA-WLTL---DNGQ--ALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeEEEEe-eCCeE-EEEE---CCCC--EEEeCEEEEeCCCCCh
Confidence 34666777777664 799999999999987 33332 2333 4565 4899999999997763
No 227
>PTZ00367 squalene epoxidase; Provisional
Probab=98.62 E-value=7.9e-07 Score=98.71 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=33.3
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
..++||+|||||++|+++|+.|+++|.+|+|+|+..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 356999999999999999999999999999999963
No 228
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.62 E-value=1.2e-06 Score=98.08 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=33.4
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
.+..+|+|||||++||++|+.|+++|++|+|+||..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999964
No 229
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.62 E-value=2.5e-06 Score=95.79 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=32.7
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 82 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~ 82 (633)
.-+|+|||+|++||++|..|++.|++|+|+|+....
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 457999999999999999999999999999997544
No 230
>PRK07588 hypothetical protein; Provisional
Probab=98.59 E-value=9.8e-07 Score=94.62 Aligned_cols=32 Identities=28% Similarity=0.284 Sum_probs=30.7
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
||+|||||++||++|+.|+++|.+|+|+||..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 79999999999999999999999999999974
No 231
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.58 E-value=4.7e-06 Score=88.61 Aligned_cols=33 Identities=36% Similarity=0.477 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHHH--HhCCCcEEEEeecCC
Q 046556 49 DAVVVGAGGAGLRAAIGL--SEHGFNTACITKLFP 81 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~a--a~~G~~V~vlEk~~~ 81 (633)
||||||+|+||+++|.+| ++.|.+|+|||+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 899999999999999999 778999999998643
No 232
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.56 E-value=2.1e-06 Score=94.33 Aligned_cols=34 Identities=32% Similarity=0.372 Sum_probs=31.8
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
..+|+|||+|++|++||..|++.|++|+|+|+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 3689999999999999999999999999999864
No 233
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.56 E-value=8.1e-07 Score=105.59 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=33.9
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
...+||+|||||+|||+||+.|++.|++|+|+|+...
T Consensus 161 ~~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 161 NAHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred cccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3568999999999999999999999999999999754
No 234
>PRK06996 hypothetical protein; Provisional
Probab=98.55 E-value=1.2e-06 Score=94.23 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCc
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGY 246 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 246 (633)
..+...|.+.+.+.|++++.+++++++.. ++..++ +.. ...+|+ ..++|+.||.|.|+.
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~-~~~~v~-v~~-~~~~g~-~~i~a~lvIgADG~~ 173 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQ-DADGVT-LAL-GTPQGA-RTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeee-cCCeEE-EEE-CCCCcc-eEEeeeEEEECCCCC
Confidence 46778888989889999999999999976 333332 222 111232 359999999999964
No 235
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.55 E-value=1.5e-06 Score=93.47 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATG 244 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 244 (633)
..+.+.|.+.++..|.+++.++.|.+|..++++++++|.+ .+|+. ++|+.||....
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~---~~Ge~--i~a~~VV~~~s 287 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKS---EGGEV--AKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEE---CCCcE--EECCEEEECcc
Confidence 5788999999999999999999999999855678888876 56764 88999988554
No 236
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.55 E-value=2.3e-06 Score=96.94 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCC--CEEEEEEEEEEEEEccCC-cEEEEEEEEc---CCCeEEEEEcCeEEEccCCcCCC
Q 046556 185 ALLHTLYGQAMKHN--TQFFVEYFALDLIMNSDG-TCQGVIALNM---EDGTLHRFRAASTILATGGYGRA 249 (633)
Q Consensus 185 ~l~~~l~~~a~~~g--v~i~~~~~v~~L~~d~~g-~v~Gv~~~~~---~~G~~~~i~A~~VVlAtGg~~~~ 249 (633)
.+.+.|.+.+.+.+ +++..+++++++..++++ ..+.|.+.+. .+|+..+++||.||-|.|+.+..
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence 45667777777765 477889999999874322 2234555442 14655679999999999988743
No 237
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.54 E-value=1.8e-06 Score=93.44 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=34.8
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCCCc-EEEEeecCCC
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHGFN-TACITKLFPT 82 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G~~-V~vlEk~~~~ 82 (633)
....+||+|||||++|+++|++|.++|.. ++|+||....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~ 44 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc
Confidence 34568999999999999999999999998 9999998544
No 238
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.54 E-value=1.2e-06 Score=97.27 Aligned_cols=54 Identities=15% Similarity=0.163 Sum_probs=43.3
Q ss_pred HHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCC-eEEEEEcCeEEEccCCcCC
Q 046556 194 AMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDG-TLHRFRAASTILATGGYGR 248 (633)
Q Consensus 194 a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G-~~~~i~A~~VVlAtGg~~~ 248 (633)
.+..+++|.+++.|+.|+. +.++++|+.+.....+ ....+.++.||||+|++..
T Consensus 213 ~~~~nl~v~t~a~v~ri~~-~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~S 267 (542)
T COG2303 213 LKRPNLTLLTGARVRRILL-EGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINS 267 (542)
T ss_pred hcCCceEEecCCEEEEEEE-ECCeeEEEEEEeCCCCceEEEecCceEEEeccccCC
Confidence 4456799999999999999 7899999988753332 3555678899999999874
No 239
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.52 E-value=7.1e-06 Score=90.79 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCc
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGY 246 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 246 (633)
...+.+.|.+.+++.|++|++++.|++|.. ++++++|+++.+..+|+...+.||.||+++...
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 357889999999999999999999999998 677888888754223333458999999998853
No 240
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.52 E-value=3.5e-06 Score=92.22 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGG 245 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 245 (633)
..+.+.|.+.+++.|++|++++.|++|..+++++++|+.+.+...++...+.||.||+|+..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 46778888888888999999999999987456788898875422222235899999999874
No 241
>PRK05868 hypothetical protein; Validated
Probab=98.51 E-value=2.4e-06 Score=90.84 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=31.1
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
||+|||||++|+++|+.|+++|++|+|+||.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 799999999999999999999999999999743
No 242
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.50 E-value=3.3e-06 Score=93.64 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGG 245 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 245 (633)
...+.+.|.+.+++.|++|+.++.|++|.. ++++++||.+ .+|+. +.||.||+|++.
T Consensus 218 ~~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~---~~g~~--~~ad~VI~a~~~ 274 (502)
T TIGR02734 218 TGALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHL---ADGER--LDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEE---CCCCE--EECCEEEECCcH
Confidence 357888999999999999999999999998 5778888876 45653 789999998885
No 243
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.45 E-value=1.3e-05 Score=84.08 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhC-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 184 HALLHTLYGQAMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 184 ~~l~~~l~~~a~~~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
..+.+.|.+.+.+. |++++++++|++|....+|+ .-|.+.+..+|+...++|+.|++.+||.+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCchHh
Confidence 36777888888776 99999999999999855553 34556666788888999999999999876
No 244
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.44 E-value=8.2e-07 Score=92.53 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=48.6
Q ss_pred CCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCCh-hhHHHHHHHHHHHHH
Q 046556 380 GVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGA-NSLLDIVVFGRACAN 458 (633)
Q Consensus 380 G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg-~~l~~a~~~G~~Ag~ 458 (633)
|+-|.+...+. ....-..|+|.||+.+| |++||+||+||++...+++.+.... --...|..+|+.|+.
T Consensus 310 G~~p~t~~~~~-g~~~~~~G~i~V~~~f~----------t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ 378 (478)
T KOG1336|consen 310 GIKPNTSFLEK-GILLDSKGGIKVDEFFQ----------TSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVK 378 (478)
T ss_pred ccccccccccc-cceecccCCEeehhcee----------eccCCcccccceeecccccccccccchHHHHHHHHHHhhhh
Confidence 45555554444 22223458888888877 9999999999998667777765543 445567778887776
Q ss_pred HHH
Q 046556 459 RVA 461 (633)
Q Consensus 459 ~aa 461 (633)
++-
T Consensus 379 ai~ 381 (478)
T KOG1336|consen 379 AIK 381 (478)
T ss_pred hhh
Confidence 664
No 245
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=3.5e-07 Score=94.26 Aligned_cols=37 Identities=38% Similarity=0.510 Sum_probs=33.3
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
+..|||||||||-|||-||..+++.|.+.+|+.....
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld 62 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD 62 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence 3569999999999999999999999999999987543
No 246
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.42 E-value=1.9e-06 Score=93.74 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
..+-+.|++.|++.||+++.++ |+++..+++|.|++|.+ .+|+ +++||.||-|||-.+.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~---~~g~--~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRL---DDGR--TIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEE---TTSE--EEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEE---CCCC--EEEEeEEEECCCccch
Confidence 5677889999999999998875 77777767888888877 5665 4899999999996553
No 247
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.39 E-value=7.4e-06 Score=88.09 Aligned_cols=62 Identities=10% Similarity=0.012 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCC
Q 046556 184 HALLHTLYGQAMK-HNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRA 249 (633)
Q Consensus 184 ~~l~~~l~~~a~~-~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~ 249 (633)
..+...|.+.+.+ .+++++++++|+++.. +++.+ .+.+.+..+++ .+.||.||-|.|..+..
T Consensus 107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~-~~~~v-~v~~~~~~~~~--~~~adlvIgADG~~S~v 169 (400)
T PRK06475 107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQ-TGNSI-TATIIRTNSVE--TVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEec-CCCce-EEEEEeCCCCc--EEecCEEEECCCccHhH
Confidence 4677888887766 4899999999999977 44443 23333222332 48999999999988743
No 248
>PRK06753 hypothetical protein; Provisional
Probab=98.39 E-value=2.3e-06 Score=91.18 Aligned_cols=33 Identities=33% Similarity=0.417 Sum_probs=31.2
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
||+|||||++||++|+.|+++|++|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 799999999999999999999999999999754
No 249
>PRK07233 hypothetical protein; Provisional
Probab=98.37 E-value=3.4e-06 Score=91.65 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGG 245 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 245 (633)
..+.+.|.+.+++.|++|+++++|++|.. ++++++++.. +++ .+.||.||+|+..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~-~~~~~~~~~~----~~~--~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVI-DGGGVTGVEV----DGE--EEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEE-cCCceEEEEe----CCc--eEECCEEEECCCH
Confidence 46788888888889999999999999988 5666655542 343 4889999999985
No 250
>PLN02612 phytoene desaturase
Probab=98.36 E-value=1.8e-05 Score=88.71 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGG 245 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 245 (633)
..+...|.+.+++.|++|+++++|++|..+++++++++.+ .+|+. +.||.||+|+..
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~---~~G~~--~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLL---TNGSV--VEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEE---CCCcE--EECCEEEECCCH
Confidence 4677888888888999999999999999855677777766 45654 889999999864
No 251
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.30 E-value=8e-06 Score=88.27 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=30.0
Q ss_pred cEEEECCchHHHHHHHHHHhCC-CcEEEEeecCC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHG-FNTACITKLFP 81 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G-~~V~vlEk~~~ 81 (633)
.|+|||||++||++|+.|+++| .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 4999999999999999999998 59999999643
No 252
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.30 E-value=5.1e-06 Score=92.35 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
...++..+...++++|++++++++|+++.. ++++++||.+.+..+|+...|.|+.||+|+|.|+.
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~-~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIR-EGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 467888889999999999999999999998 67889999987656776677999999999998863
No 253
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.30 E-value=4.2e-06 Score=81.33 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=97.6
Q ss_pred ccEEEECCchHHHHHHHHHHhCC------CcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHG------FNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGD 121 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G------~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~ 121 (633)
..|+|||||+.|+++|+.|++++ ..|+|+|+..+.++.+..+. |+.+-+ ++
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkas-gfLa~w----------------------c~ 67 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKAS-GFLAKW----------------------CQ 67 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccc-hhhHhh----------------------hC
Confidence 56999999999999999999987 78999999877666555443 332211 22
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHCCCc----ccccCCCcccccccCCcccccCCCCcc--ce----eEEccCCchH
Q 046556 122 QDAIQYMCREAPKAVIEL-------ENYGLP----FSRTEDGKIYQRAFGGQSLDFGKGGQA--YR----CACAADRTGH 184 (633)
Q Consensus 122 ~~~v~~~~~~~~~~~~~l-------~~~Gv~----f~~~~~g~~~~~~~gg~~~~~~~g~~~--~r----~~~~~~~~g~ 184 (633)
+..+..++.-+....+.| .+||.. +.-..+.........+...++-.+... +. .-..++...+
T Consensus 68 ~s~~~~La~lsfkLh~~LsdeydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~ 147 (380)
T KOG2852|consen 68 PSIIQPLATLSFKLHEELSDEYDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPY 147 (380)
T ss_pred CcccchhhHHHHHHHHHHHHhhcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHH
Confidence 222223333333333333 223321 000000000000000000111000000 00 0001122346
Q ss_pred HHHHHHHHHHHhCC-CEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCC
Q 046556 185 ALLHTLYGQAMKHN-TQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSA 253 (633)
Q Consensus 185 ~l~~~l~~~a~~~g-v~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~ 253 (633)
.+...++.++++.| |+++.+. |.++. |+.+|+.++.... ..+......++.||+|.|-|...+.+.
T Consensus 148 lFc~~i~sea~k~~~V~lv~Gk-v~ev~-dEk~r~n~v~~ae-~~~ti~~~d~~~ivvsaGPWTskllp~ 214 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFGK-VKEVS-DEKHRINSVPKAE-AEDTIIKADVHKIVVSAGPWTSKLLPF 214 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEee-eEEee-cccccccccchhh-hcCceEEeeeeEEEEecCCCchhhccc
Confidence 78888888888764 8888765 66776 4778888876532 234455577889999999998765543
No 254
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.27 E-value=2.1e-06 Score=79.58 Aligned_cols=140 Identities=26% Similarity=0.340 Sum_probs=82.1
Q ss_pred cccEEEECCchHHHHHHHHHHhC--CCcEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHHH
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 124 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~ 124 (633)
+.||+|||+|.+||+||+..+++ ..+|.+||..-.++|+. |. ||.. |..+.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa-WL-GGQL--------------FSAMv----------- 128 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA-WL-GGQL--------------FSAMV----------- 128 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc-cc-cchh--------------hhhhh-----------
Confidence 57999999999999999999865 67999999864443332 21 1110 00000
Q ss_pred HHHHHHHHHHHHHHHHHCCCcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHHHH-HHHHhCCCEEEE
Q 046556 125 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLY-GQAMKHNTQFFV 203 (633)
Q Consensus 125 v~~~~~~~~~~~~~l~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~l~-~~a~~~gv~i~~ 203 (633)
+ +. ..--+|.+.|+++....+ +.. .. ...-++.... +.+..-+++++.
T Consensus 129 v----RK--PAhLFL~EigvpYedegd--YVV------------------VK-----HAALFtSTvmsk~LalPNVKLFN 177 (328)
T KOG2960|consen 129 V----RK--PAHLFLQEIGVPYEDEGD--YVV------------------VK-----HAALFTSTVMSKVLALPNVKLFN 177 (328)
T ss_pred h----cC--hHHHHHHHhCCCcccCCC--EEE------------------Ee-----eHHHHHHHHHHHHhcCCcceeec
Confidence 0 00 011246788998864322 111 00 1123333333 333446999999
Q ss_pred EEEEEEEEEccCC----cEEEEEEE----EcCCCe-----EEEEEcCeEEEccC
Q 046556 204 EYFALDLIMNSDG----TCQGVIAL----NMEDGT-----LHRFRAASTILATG 244 (633)
Q Consensus 204 ~~~v~~L~~d~~g----~v~Gv~~~----~~~~G~-----~~~i~A~~VVlAtG 244 (633)
-+.|.+|+..++. +|.||++. ....|. .-.+.|+.||-+||
T Consensus 178 AtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~vvS~tG 231 (328)
T KOG2960|consen 178 ATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVVVSTTG 231 (328)
T ss_pred hhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEEEEccC
Confidence 9999999873222 67787641 112332 23578888888887
No 255
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.25 E-value=6.2e-06 Score=76.11 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=27.1
Q ss_pred EEECCchHHHHHHHHHHhC-----CCcEEEEeecCC
Q 046556 51 VVVGAGGAGLRAAIGLSEH-----GFNTACITKLFP 81 (633)
Q Consensus 51 lIIGgG~AGl~AA~~aa~~-----G~~V~vlEk~~~ 81 (633)
+|||+|++|++++.+|.+. ..+|+|+|+...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 4999999999999999987 468999999544
No 256
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.24 E-value=6.1e-06 Score=89.55 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=40.4
Q ss_pred hCCCEEEEEEEEEEEEEcc-CCcEEEEEEEEcCCCeEEEEEcC-eEEEccCCcCC
Q 046556 196 KHNTQFFVEYFALDLIMNS-DGTCQGVIALNMEDGTLHRFRAA-STILATGGYGR 248 (633)
Q Consensus 196 ~~gv~i~~~~~v~~L~~d~-~g~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~~ 248 (633)
+.+..+..++.|+.++.|. +.+..|++... ..|+.+.++|+ -|||++|+++.
T Consensus 266 R~NL~~~~~~~vtrvl~D~~~~~a~gv~~~~-~~~~~~~v~a~kEVILSAGAi~S 319 (623)
T KOG1238|consen 266 RPNLHISRNAAVTRVLIDPAGKRAKGVEFVR-DGGKEHTVKARKEVILSAGAINS 319 (623)
T ss_pred CccccccccceEEEEEEcCCCceEEEEEEEe-cCceeeeecccceEEEeccccCC
Confidence 3477888889999999964 45788998864 33788888885 49999999874
No 257
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.22 E-value=3.1e-05 Score=84.95 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEcc--CC--cEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNS--DG--TCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~--~g--~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
+..+.+.+.+.+++.|++|+.+++|++|..++ ++ +++|+.+.+ .++ ...+.||+||+|+....
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~-g~~-~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK-PEG-KKVIKADAYVAACDVPG 284 (474)
T ss_pred chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEec-CCc-ceEEECCEEEECCChHH
Confidence 44566778888888999999999999998843 23 377877632 122 12488999999999653
No 258
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.19 E-value=2e-06 Score=67.10 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=30.9
Q ss_pred EECCchHHHHHHHHHHhCCCcEEEEeecCCCCCccc
Q 046556 52 VVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTV 87 (633)
Q Consensus 52 IIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~ 87 (633)
|||+|++||+||+.|+++|.+|+|+||....+|...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 899999999999999999999999999876655443
No 259
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.16 E-value=1.1e-05 Score=82.91 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=34.7
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCc
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 85 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~ 85 (633)
+.+|+|||||++||++|+.++++|.+|+|+|+....++.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 357999999999999999999999999999997666554
No 260
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.15 E-value=1.3e-05 Score=88.50 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHhCCC--EEEEEEEEEEEEEccCCcEEEEE-EEEcCCCeEEEEEcCeEEEccCCcCCCC
Q 046556 183 GHALLHTLYGQAMKHNT--QFFVEYFALDLIMNSDGTCQGVI-ALNMEDGTLHRFRAASTILATGGYGRAY 250 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv--~i~~~~~v~~L~~d~~g~v~Gv~-~~~~~~G~~~~i~A~~VVlAtGg~~~~~ 250 (633)
...+.+.|...|+..++ .|.++|+|+++..+++....|-+ +....+|+...-..|+||+|||.+...+
T Consensus 83 ~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~ 153 (531)
T PF00743_consen 83 HSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPN 153 (531)
T ss_dssp HHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCES
T ss_pred HHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCC
Confidence 46788888888887776 68899999999874443333322 2223466665666899999999887433
No 261
>PLN02487 zeta-carotene desaturase
Probab=98.09 E-value=9.3e-05 Score=82.26 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=49.1
Q ss_pred CchHHHHHHHHHHHHhCCCEEEEEEEEEEEEEcc--CC--cEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 181 RTGHALLHTLYGQAMKHNTQFFVEYFALDLIMNS--DG--TCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 181 ~~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~--~g--~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
..+..+.+.+.+.+++.|++|++++.|.+|..+. ++ +++|+.+.+ +++...+.||.||+|++-..
T Consensus 292 g~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~--~~~~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 292 SPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK--ATEKEIVKADAYVAACDVPG 360 (569)
T ss_pred CchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec--CCCceEEECCEEEECCCHHH
Confidence 3444688899999999999999999999998842 22 488887731 23333488999999999653
No 262
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.07 E-value=6.3e-05 Score=80.67 Aligned_cols=36 Identities=33% Similarity=0.422 Sum_probs=33.0
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 82 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~ 82 (633)
.-+|+|||+|+|||++|..|.+.|.+|+|+||....
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i 41 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI 41 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc
Confidence 468999999999999999999999999999997554
No 263
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.05 E-value=7.2e-05 Score=60.45 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=29.4
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
|+|||||..|+-.|..+++.|.+|+|+++.+
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence 8999999999999999999999999999863
No 264
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.01 E-value=4.2e-05 Score=80.40 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=29.1
Q ss_pred ccEEEECCchHHHHHHHHHHhCC--CcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHG--FNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G--~~V~vlEk~ 79 (633)
..|||||||.+|+.+|..|.++- .+|+|||+.
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~ 37 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR 37 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCC
Confidence 35999999999999999999974 899999996
No 265
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.97 E-value=3.2e-05 Score=76.21 Aligned_cols=38 Identities=37% Similarity=0.442 Sum_probs=33.3
Q ss_pred cccccEEEECCchHHHHHHHHHHhC--CCcEEEEeecCCC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFPT 82 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~~~~ 82 (633)
..+||++|||||+.||+.|.++.-+ +.+|.|+||....
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 4579999999999999999999877 8999999996543
No 266
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.94 E-value=9e-05 Score=77.53 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCC
Q 046556 183 GHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY 250 (633)
Q Consensus 183 g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~ 250 (633)
...++..|.+.+++.|++++.+++|++|.. +++++++|.+ .+| .++|+.||+|+|.++..+
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~---~~g---~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVT---PSG---DVQADQVVLAAGAWAGEL 196 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEc---CCC---EEECCEEEEcCChhhhhc
Confidence 468889999999999999999999999988 5777877764 445 389999999999987544
No 267
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.92 E-value=4.4e-05 Score=80.93 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=31.2
Q ss_pred cEEEECCchHHHHHHHHHHhC--CCcEEEEeecCCC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFPT 82 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~~~~ 82 (633)
||+|||||+||+++|+.|++. |.+|+|+|+....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 899999999999999999987 9999999997543
No 268
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.91 E-value=0.00018 Score=76.85 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCC
Q 046556 182 TGHALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY 250 (633)
Q Consensus 182 ~g~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~ 250 (633)
....++..|.+.+++ |+++++++.|+++.. ++++ +++.+ .+|.. +.|+.||+|+|.++...
T Consensus 133 dp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~-~~~~-~~v~t---~~g~~--~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 133 SPPQLCRALLAHAGI-RLTLHFNTEITSLER-DGEG-WQLLD---ANGEV--IAASVVVLANGAQAGQL 193 (381)
T ss_pred ChHHHHHHHHhccCC-CcEEEeCCEEEEEEE-cCCe-EEEEe---CCCCE--EEcCEEEEcCCcccccc
Confidence 346888999999988 999999999999987 4554 33433 45643 78999999999987543
No 269
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.83 E-value=7.2e-05 Score=86.84 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=30.4
Q ss_pred cEEEECCchHHHHHHHHHHhC--CCcEEEEeecCC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFP 81 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~~~ 81 (633)
+|+|||||+|||+||+.|++. |++|+|+||...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 599999999999999999998 899999999753
No 270
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.73 E-value=0.0004 Score=76.41 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=30.1
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||.+|+-+|..+++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~ 212 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAA 212 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 47999999999999999999999999999986
No 271
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.69 E-value=0.00023 Score=74.38 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEccCC--cEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNSDG--TCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g--~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
..+.+.+.-.+.+..-.+.++++|++|..++++ ...-|.+.+ .+|+...+.|+.||||+|+..
T Consensus 95 ~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 95 REFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp HHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEESEEEE----EE
T ss_pred HHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeCeEEECcCCCC
Confidence 455555555566666558889999999874333 345555555 577777899999999999654
No 272
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.66 E-value=0.0006 Score=74.83 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=30.2
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-+|+|||||.+|+.+|..+++.|.+|+|+++.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~ 202 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEML 202 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47999999999999999999999999999985
No 273
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.64 E-value=5.6e-05 Score=73.27 Aligned_cols=32 Identities=41% Similarity=0.443 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
+|+|||+|+||++||..|+++|.+|+|+||+.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 69999999999999999999999999999974
No 274
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.63 E-value=5.8e-05 Score=79.50 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=34.6
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcc
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 86 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t 86 (633)
+||+|||||++|+++|..|++.|.+|+|+|+....+|.+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~ 40 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNC 40 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCce
Confidence 699999999999999999999999999999976555543
No 275
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.58 E-value=7.7e-05 Score=81.40 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=35.1
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCC
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 84 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g 84 (633)
.+..+|||||+|+|||+||..|.+.|.+|+|+|.....+|
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 3567899999999999999999999999999997655544
No 276
>PLN02576 protoporphyrinogen oxidase
Probab=97.55 E-value=8.4e-05 Score=82.36 Aligned_cols=40 Identities=33% Similarity=0.385 Sum_probs=35.2
Q ss_pred ccccEEEECCchHHHHHHHHHHhC-CCcEEEEeecCCCCCc
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKLFPTRSH 85 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~-G~~V~vlEk~~~~~g~ 85 (633)
.++||+|||||++||+||+.|+++ |.+|+|+|+....+|-
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 457899999999999999999999 9999999998665543
No 277
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.50 E-value=0.00011 Score=76.70 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=35.5
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCc
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 85 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~ 85 (633)
+.+-++||||||+||+.||+.|++.|.+|.|+||.+..+|.
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 34567999999999999999999999999999998665443
No 278
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.48 E-value=0.0016 Score=71.44 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=29.5
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~ 204 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEAL 204 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 6999999999999999999999999999985
No 279
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.48 E-value=0.001 Score=73.31 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=35.8
Q ss_pred HHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCC
Q 046556 194 AMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAY 250 (633)
Q Consensus 194 a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~ 250 (633)
.+++||+++.+.+|+.+.. ++..|+ . ..|.. +..|.+|||||++....
T Consensus 69 y~~~~i~L~~~~~v~~idr-~~k~V~---t---~~g~~--~~YDkLilATGS~pfi~ 116 (793)
T COG1251 69 YEENGITLYTGEKVIQIDR-ANKVVT---T---DAGRT--VSYDKLIIATGSYPFIL 116 (793)
T ss_pred HHHcCcEEEcCCeeEEecc-CcceEE---c---cCCcE--eecceeEEecCcccccc
Confidence 4578999999999999976 333221 1 56654 78899999999988543
No 280
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.48 E-value=0.00012 Score=74.79 Aligned_cols=46 Identities=28% Similarity=0.447 Sum_probs=35.2
Q ss_pred CcccCeeeeccccc--ccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 046556 419 EVVPGLMAAGEAAC--ASVHGANRLGANSLLDIVVFGRACANRVAEIQRP 466 (633)
Q Consensus 419 T~ipGLyAaGe~a~--~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~ 466 (633)
..-.|||+|||++| .++-|+.|+.. --.|+++||+||++++...+.
T Consensus 475 ~ar~NvwvAGdaacF~D~~LGrRRVeh--hdhavvSGRLAGENMtgAakp 522 (659)
T KOG1346|consen 475 KARENVWVAGDAACFEDGVLGRRRVEH--HDHAVVSGRLAGENMTGAAKP 522 (659)
T ss_pred ecccceeeecchhhhhcccccceeccc--cccceeeceecccccccccCC
Confidence 45679999999986 35678877653 335699999999999876554
No 281
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.47 E-value=0.0018 Score=71.14 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=29.7
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-.|..+++.|.+|+|+|+.
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~ 206 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYL 206 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC
Confidence 36999999999999999999999999999985
No 282
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.47 E-value=0.0018 Score=71.20 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=29.4
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||+|..|+-+|..+++.|.+|.|+|+.
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~ 204 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFL 204 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEecC
Confidence 6999999999999999999999999999975
No 283
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.46 E-value=0.0018 Score=70.87 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=29.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||.+|+-+|..+++.|.+|+|+++.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~ 202 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMA 202 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 36999999999999999999999999999985
No 284
>PLN02268 probable polyamine oxidase
Probab=97.46 E-value=0.00012 Score=79.55 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=34.2
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcc
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 86 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t 86 (633)
+|+|||+|+|||+||..|.++|.+|+|+|+....+|..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri 39 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCcee
Confidence 69999999999999999999999999999987666543
No 285
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.45 E-value=0.00012 Score=79.91 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.5
Q ss_pred cEEEECCchHHHHHHHHHHhCC--CcEEEEeecCCCCC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHG--FNTACITKLFPTRS 84 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G--~~V~vlEk~~~~~g 84 (633)
+|+|||||+|||+||+.|+++| .+|+|+|+....+|
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 5999999999999999999988 89999999766554
No 286
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.44 E-value=0.0021 Score=70.81 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 189 TLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 189 ~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
.+.+.+++.|++++.+++|+++.. +++.+ .+...+ .+|+...+.+|.||+|+|...
T Consensus 229 ~~~~~l~~~gi~i~~~~~v~~i~~-~~~~v-~v~~~~-~~g~~~~i~~D~vl~a~G~~p 284 (475)
T PRK06327 229 EAAKAFTKQGLDIHLGVKIGEIKT-GGKGV-SVAYTD-ADGEAQTLEVDKLIVSIGRVP 284 (475)
T ss_pred HHHHHHHHcCcEEEeCcEEEEEEE-cCCEE-EEEEEe-CCCceeEEEcCEEEEccCCcc
Confidence 344555678999999999999976 34433 233333 346556799999999999543
No 287
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.44 E-value=0.0012 Score=73.51 Aligned_cols=48 Identities=8% Similarity=0.163 Sum_probs=39.1
Q ss_pred CCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCC
Q 046556 197 HNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGG 245 (633)
Q Consensus 197 ~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 245 (633)
.||+++.++.++++.. +++++.++.+.+..+|+...+.+|.||+|+|-
T Consensus 401 ~gV~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 401 PNVDILTSAQTTEIVG-DGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred CCCEEEECCeeEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 5899999999999976 55788888876644566667999999999993
No 288
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.42 E-value=0.00015 Score=79.60 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=34.1
Q ss_pred ccEEEECCchHHHHHHHHHHhC----CCcEEEEeecCCCCCc
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEH----GFNTACITKLFPTRSH 85 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~----G~~V~vlEk~~~~~g~ 85 (633)
.||+|||||++||+||+.|+++ |.+|+|+|+....+|.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 5899999999999999999998 9999999998665543
No 289
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=97.42 E-value=0.0016 Score=69.17 Aligned_cols=236 Identities=7% Similarity=-0.206 Sum_probs=132.7
Q ss_pred CCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCCCCCCCCCCCCCchHHHHHHHHcCCCccCccccccccccccCCccee
Q 046556 215 DGTCQGVIALNMEDGTLHRFRAASTILATGGYGRAYFSATSAHTCTGDGNAMVSRAGLPLEDLEFVQFHPTGIYGAGCLL 294 (633)
Q Consensus 215 ~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~~~tGdg~~~a~~aGa~l~~~e~~~~~p~~~~~~~~~~ 294 (633)
..++.+.++.....|..+.+.+..-+.+++|.+..+......+..++++..+--..|+.. +...+...
T Consensus 240 ~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d~efvqfhpt~i~g~Gc------------liteg~rg 307 (642)
T KOG2403|consen 240 RFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSDMEFVQFHPTGIYGAGC------------LITEGVRG 307 (642)
T ss_pred eeeeeeeEEEEeccceEEEEeccCeeEccCCCeEEeeccCCCcccceeeeeeecccccce------------eeeecccc
Confidence 456666666554677777777788888888887655444444444444443333333322 11111111
Q ss_pred eeccccCCCcEEECCCCCccccccCCccccccchhHHhHHHHHHHHhcCCCCCCCCeEEEecCCCChhHHHHHhHHHHHH
Q 046556 295 LKVGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISET 374 (633)
Q Consensus 295 ~~~~~~g~g~~~vn~~G~rf~~~~~~~~~~l~~r~~~~~~i~~e~~~g~g~~~~~~~v~~d~~~~~~~~l~~~~~~~~~~ 374 (633)
..+.....+...+..+++++.++.+-...++.+..+...+-..+..+++-.....+.+.-....++.......+.+...
T Consensus 308 -eGG~l~n~~~erfme~y~~~akdla~rdvvsrs~tmei~~grg~g~~kd~~~l~l~h~p~e~~~~~~p~is~ta~i~ag 386 (642)
T KOG2403|consen 308 -EGGILINSNGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPNKDHVYLQLSHLPPEPLKERLPGISETAAIFAG 386 (642)
T ss_pred -cccceeeccceeeccccccchhhcchhhhhhhhhhhhhHhhcccCCCCCccchhhccCChhhhcccCCCcchhhhhHhh
Confidence 2222234455667788888887766544444444454444444444333222211121111011110011122333333
Q ss_pred HHHHcCCCCCCCCeeccccccccccCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHH
Q 046556 375 AAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGR 454 (633)
Q Consensus 375 ~~~~~G~d~~~~~i~v~p~~~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~ 454 (633)
+....+.+|...++.+.+..+.++++.++....++ ..|. .----.++.+||+..+++..+.++...=+.+..+-+++.
T Consensus 387 vdVt~epiPv~ptvhy~~ggi~t~~~g~~~~~~~~-g~d~-vvpGL~a~GEaac~svHGANRLgaNSLLdlvvfgraca~ 464 (642)
T KOG2403|consen 387 VDVTKEPIPVLPTVHYNMGGIPTNYNGEVLTIREV-GQDQ-VVPGLYACGEAACASVHGANRLGANSLLDLVVFGRACAL 464 (642)
T ss_pred cCccccccccCCCcccccCccccCCccceeeeccc-cccc-cccceeehhHHHHHhhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 44457788888889999999999887766544433 2111 122568999999999887787666666688999999999
Q ss_pred HHHHHHHHHhC
Q 046556 455 ACANRVAEIQR 465 (633)
Q Consensus 455 ~Ag~~aa~~~~ 465 (633)
..++....-.+
T Consensus 465 ~ia~~~~pg~~ 475 (642)
T KOG2403|consen 465 SIAEELRPGDK 475 (642)
T ss_pred HHHHhcCCCCC
Confidence 88888765443
No 290
>PRK06370 mercuric reductase; Validated
Probab=97.41 E-value=0.0018 Score=71.15 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=30.0
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~ 203 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERG 203 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 36999999999999999999999999999985
No 291
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.40 E-value=0.0002 Score=71.25 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=37.1
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcccc
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVA 88 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~~ 88 (633)
+|+||||+|.+|+..|-.|++.|.+|+||||....+|++.-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 79999999999999999999999999999998777776653
No 292
>PLN02568 polyamine oxidase
Probab=97.39 E-value=0.00019 Score=79.71 Aligned_cols=41 Identities=27% Similarity=0.266 Sum_probs=35.4
Q ss_pred cccccEEEECCchHHHHHHHHHHhCC-----CcEEEEeecCCCCCc
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHG-----FNTACITKLFPTRSH 85 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G-----~~V~vlEk~~~~~g~ 85 (633)
.+..||+|||+|++||+||..|++.| .+|+|+|+....+|.
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 34579999999999999999999887 899999997766553
No 293
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.38 E-value=0.0014 Score=67.17 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=38.0
Q ss_pred HHhC-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccC
Q 046556 194 AMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATG 244 (633)
Q Consensus 194 a~~~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 244 (633)
+++. |++++.+++++++.. + +++.++.+.+..+|+...+.+|.||+|+|
T Consensus 186 l~~~~gv~~~~~~~v~~i~~-~-~~~~~v~~~~~~~g~~~~i~~D~vi~a~G 235 (300)
T TIGR01292 186 LRKNPNIEFLWNSTVKEIVG-D-NKVEGVKIKNTVTGEEEELKVDGVFIAIG 235 (300)
T ss_pred HHhCCCeEEEeccEEEEEEc-c-CcEEEEEEEecCCCceEEEEccEEEEeeC
Confidence 3445 899999999999975 3 46777776654556667799999999999
No 294
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.36 E-value=0.0014 Score=72.87 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=40.1
Q ss_pred CCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccC
Q 046556 197 HNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATG 244 (633)
Q Consensus 197 ~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 244 (633)
.||+++.++.++++.. +++++.++.+.+..+|+...+.+|.|++|+|
T Consensus 400 ~gI~i~~~~~v~~i~~-~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G 446 (517)
T PRK15317 400 PNVTIITNAQTTEVTG-DGDKVTGLTYKDRTTGEEHHLELEGVFVQIG 446 (517)
T ss_pred CCcEEEECcEEEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeEC
Confidence 5899999999999987 5678888888765567767899999999999
No 295
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.34 E-value=0.0025 Score=67.95 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=29.9
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~ 173 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNA 173 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecC
Confidence 36999999999999999999999999999985
No 296
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.32 E-value=0.003 Score=69.32 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=30.1
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~ 198 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRS 198 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 47999999999999999999999999999985
No 297
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.30 E-value=0.0076 Score=62.54 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=29.9
Q ss_pred cccccccEEEECCchHHHHHHHHHHhCCCcEEEEee
Q 046556 43 IVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITK 78 (633)
Q Consensus 43 ~~~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk 78 (633)
...+.-.|||+|+|=+|++..-.+-..-++|+||.-
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSP 86 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSP 86 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEecc
Confidence 344567899999999999998888777789999975
No 298
>PRK06116 glutathione reductase; Validated
Probab=97.30 E-value=0.003 Score=69.08 Aligned_cols=32 Identities=28% Similarity=0.177 Sum_probs=29.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-.|..+++.|.+|++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 199 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG 199 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 36999999999999999999999999999985
No 299
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.28 E-value=0.0026 Score=68.33 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=29.9
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~ 176 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELA 176 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 36999999999999999999999999999985
No 300
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.0056 Score=64.92 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=30.7
Q ss_pred ccEEEECCchHHHHHHHHHHhC--C-CcEEEEeecCCCCCcc
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEH--G-FNTACITKLFPTRSHT 86 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~--G-~~V~vlEk~~~~~g~t 86 (633)
++|+|||||++|++.|.+|.+. . ..|.|+|+....+++.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gi 43 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGI 43 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCc
Confidence 5799999999999999999885 1 2399999875544433
No 301
>PRK10262 thioredoxin reductase; Provisional
Probab=97.25 E-value=0.0037 Score=65.03 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=39.4
Q ss_pred HHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcC-CCeEEEEEcCeEEEccC
Q 046556 191 YGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNME-DGTLHRFRAASTILATG 244 (633)
Q Consensus 191 ~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~-~G~~~~i~A~~VVlAtG 244 (633)
.+.+++.||+++.++.++++.. +++.+.++.+.+.. +++...+.+|.||+|+|
T Consensus 192 ~~~l~~~gV~i~~~~~v~~v~~-~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G 245 (321)
T PRK10262 192 MDKVENGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 245 (321)
T ss_pred HhhccCCCeEEEeCCEEEEEEc-CCccEEEEEEEEcCCCCeEEEEECCEEEEEeC
Confidence 3445677999999999999976 45567788775432 23445799999999999
No 302
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.24 E-value=0.0039 Score=68.37 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=30.0
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-.|..+++.|.+|+|+++.
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~ 207 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTR 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 36999999999999999999999999999985
No 303
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.23 E-value=0.0039 Score=68.10 Aligned_cols=32 Identities=28% Similarity=0.250 Sum_probs=30.0
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||..|+-.|..+++.|.+|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~ 198 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRH 198 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 36999999999999999999999999999985
No 304
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.00033 Score=74.72 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=34.1
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcc
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 86 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t 86 (633)
.|+|+|+|+|||+||+.|+++|++|+|+|.+...+|..
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCcee
Confidence 48999999999999999999999999999987766543
No 305
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.23 E-value=0.0035 Score=68.24 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||||.+|+.+|..+++.|.+|+|+++.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~ 189 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAA 189 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 6999999999999999999999999999985
No 306
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.19 E-value=0.0039 Score=67.33 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=30.1
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
.++|||||..|+--|..+++.|.+|+|+|+..
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~ 206 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGD 206 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 49999999999999999999999999999963
No 307
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00051 Score=72.02 Aligned_cols=41 Identities=32% Similarity=0.426 Sum_probs=35.8
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCc
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 85 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~ 85 (633)
.+.+||||||+|.+||+||+.+.+.|++|+|+|.....+|-
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 46789999999999999999999999999999976554443
No 308
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.16 E-value=0.0045 Score=67.54 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=29.5
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~ 181 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLE 181 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCC
Confidence 46999999999999999999999999999875
No 309
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.14 E-value=0.00045 Score=73.58 Aligned_cols=33 Identities=27% Similarity=0.223 Sum_probs=31.0
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
+||+|||||.+|+.||+.|+++|.+|+|+|+.+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 489999999999999999999999999999864
No 310
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.12 E-value=0.00048 Score=73.62 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=31.7
Q ss_pred EEEECCchHHHHHHHHHHhCC--CcEEEEeecCCCCC
Q 046556 50 AVVVGAGGAGLRAAIGLSEHG--FNTACITKLFPTRS 84 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G--~~V~vlEk~~~~~g 84 (633)
|+|||||++||+||++|++++ .+|+|+|++...+|
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG 39 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG 39 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCc
Confidence 899999999999999999999 99999999855443
No 311
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.11 E-value=0.00066 Score=74.00 Aligned_cols=37 Identities=30% Similarity=0.375 Sum_probs=32.4
Q ss_pred ccccEEEECCchHHHHHHHHHHh--CCCcEEEEeecCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPT 82 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~--~G~~V~vlEk~~~~ 82 (633)
....|+||||||||+.||..|++ .|++|+|+|+.+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 34579999999999999999987 79999999997544
No 312
>PLN02676 polyamine oxidase
Probab=97.11 E-value=0.00055 Score=75.29 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=35.3
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCCCCCc
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFPTRSH 85 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~~~g~ 85 (633)
..+||+|||+|++||+||..|+++|. +|+|+|+....+|.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~ 65 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGR 65 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCc
Confidence 46799999999999999999999998 69999998766553
No 313
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.10 E-value=0.004 Score=72.83 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 189 TLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 189 ~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
.+.+.+++.||++++++.++++..+.++.+..+.+ .+|+. +.+|.||+|+|-..
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~---~dG~~--i~~D~Vv~A~G~rP 245 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF---ADGSE--LEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE---CCCCE--EEcCEEEECCCccc
Confidence 35556678899999999999997632344555544 46654 89999999999654
No 314
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.08 E-value=0.00051 Score=75.40 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=31.9
Q ss_pred cEEEECCchHHHHHHHHHHhC------CCcEEEEeecCCCCCc
Q 046556 49 DAVVVGAGGAGLRAAIGLSEH------GFNTACITKLFPTRSH 85 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~------G~~V~vlEk~~~~~g~ 85 (633)
+|+|||||++||+||+.|+++ |.+|+|+|+....+|-
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 599999999999999999986 3799999998665553
No 315
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.08 E-value=0.0037 Score=72.93 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=38.5
Q ss_pred HHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 190 LYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 190 l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
+.+.+++.||++++++.++++.. ++++.++.+ .+|+ .+.+|.||+|+|-..
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~---~dG~--~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVG--ATKADRIRF---KDGS--SLEADLIVMAAGIRP 238 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEc--CCceEEEEE---CCCC--EEEcCEEEECCCCCc
Confidence 44556678999999999998865 355666665 4565 489999999999544
No 316
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.06 E-value=0.0057 Score=66.40 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=29.7
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|.+|+-+|..+++.|.+|+++++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~ 169 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRS 169 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 36999999999999999999999999999985
No 317
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.05 E-value=0.0068 Score=66.63 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=30.0
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||..|+-.|..+++.|.+|+|+|+.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~ 206 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMF 206 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 36999999999999999999999999999985
No 318
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.02 E-value=0.0084 Score=65.43 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=29.3
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||+|..|+-.|..+++.|.+|.|++++
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~ 198 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRG 198 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeC
Confidence 5999999999999999999999999999985
No 319
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.01 E-value=0.017 Score=61.79 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEcc--CC-cEEEEEEEEcCCCeEEEEE--c-CeEEEccCCcC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNS--DG-TCQGVIALNMEDGTLHRFR--A-ASTILATGGYG 247 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~--~g-~v~Gv~~~~~~~G~~~~i~--A-~~VVlAtGg~~ 247 (633)
..++..|.+.+++.||++.++++|++|..+. +. .++++... .+|+...|. . |.|++..|...
T Consensus 207 eSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~--~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 207 ESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE--QDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE--cCCCeeEEEeCCCCEEEEECCccc
Confidence 3678889999999999999999999998742 22 34455444 456554454 3 56777777654
No 320
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.00 E-value=0.0075 Score=66.37 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCC
Q 046556 187 LHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGG 245 (633)
Q Consensus 187 ~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 245 (633)
...+.+.+++.|+++++++.++++..+ ++....+.+ .+|+ .+.+|.||+|+|-
T Consensus 234 ~~~l~~~L~~~GI~i~~~~~v~~i~~~-~~~~~~v~~---~~g~--~i~~D~vl~a~G~ 286 (486)
T TIGR01423 234 RKELTKQLRANGINIMTNENPAKVTLN-ADGSKHVTF---ESGK--TLDVDVVMMAIGR 286 (486)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEEc-CCceEEEEE---cCCC--EEEcCEEEEeeCC
Confidence 344555667789999999999999763 333333433 3454 4899999999993
No 321
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.00 E-value=0.0074 Score=66.23 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=29.3
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||+|..|+-.|..+++.|.+|+|+++.
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~ 209 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSR 209 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 6999999999999999999999999999975
No 322
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.98 E-value=0.0044 Score=64.77 Aligned_cols=140 Identities=18% Similarity=0.244 Sum_probs=75.2
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC--cEEEEeecCCCCCcccccccceeeecCCCCcCCHHHHHHHHHhcCCCCCCHH
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF--NTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQD 123 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~--~V~vlEk~~~~~g~t~~~~Gg~~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~ 123 (633)
....|+|||||.++.-.+..|.+.+. +|.++-|... ... . +...+ ...+.+|+
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~-----------~~~-~---d~s~f----------~ne~f~P~ 243 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG-----------FFP-M---DDSPF----------VNEIFSPE 243 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS------------EB--------CC----------HHGGGSHH
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc-----------cCC-C---ccccc----------hhhhcCch
Confidence 45679999999999999999999864 7999988531 110 0 00000 11235666
Q ss_pred HHHHHHHHHHHHHHHHHH-CC-CcccccCCCcccccccCCcccccCCCCccceeEEccCCchHHHHHH----HHHH-HH-
Q 046556 124 AIQYMCREAPKAVIELEN-YG-LPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHT----LYGQ-AM- 195 (633)
Q Consensus 124 ~v~~~~~~~~~~~~~l~~-~G-v~f~~~~~g~~~~~~~gg~~~~~~~g~~~~r~~~~~~~~g~~l~~~----l~~~-a~- 195 (633)
.+..|.....+.-..+.+ .. .. .++. ...+++. ++++ +.
T Consensus 244 ~v~~f~~l~~~~R~~~l~~~~~~n-------------y~~i--------------------~~~~l~~iy~~lY~~~v~g 290 (341)
T PF13434_consen 244 YVDYFYSLPDEERRELLREQRHTN-------------YGGI--------------------DPDLLEAIYDRLYEQRVSG 290 (341)
T ss_dssp HHHHHHTS-HHHHHHHHHHTGGGT-------------SSEB---------------------HHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhcCCHHHHHHHHHHhHhhc-------------CCCC--------------------CHHHHHHHHHHHHHHHhcC
Confidence 666665555444433322 10 00 0111 1233333 3322 21
Q ss_pred hCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccC
Q 046556 196 KHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATG 244 (633)
Q Consensus 196 ~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 244 (633)
+..++++.+++|+++..++++++. +.+.+..+++...+.+|.||+|||
T Consensus 291 ~~~~~l~~~~~v~~~~~~~~~~~~-l~~~~~~~~~~~~~~~D~VilATG 338 (341)
T PF13434_consen 291 RGRLRLLPNTEVTSAEQDGDGGVR-LTLRHRQTGEEETLEVDAVILATG 338 (341)
T ss_dssp ---SEEETTEEEEEEEEES-SSEE-EEEEETTT--EEEEEESEEEE---
T ss_pred CCCeEEeCCCEEEEEEECCCCEEE-EEEEECCCCCeEEEecCEEEEcCC
Confidence 224889999999999884445443 555666778888899999999999
No 323
>PLN02507 glutathione reductase
Probab=96.98 E-value=0.0086 Score=66.22 Aligned_cols=32 Identities=22% Similarity=0.142 Sum_probs=29.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-.|..+++.|.+|.|+++.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~ 235 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRK 235 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEec
Confidence 36999999999999999999999999999985
No 324
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.97 E-value=0.0078 Score=65.93 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=29.2
Q ss_pred ccEEEECCchHHHHHHHHHHhCCC-cEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGF-NTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~ 79 (633)
-.|+|||||..|+-+|..|.+.|. +|.++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 469999999999999999999998 89999874
No 325
>PRK14694 putative mercuric reductase; Provisional
Probab=96.97 E-value=0.0097 Score=65.39 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=29.3
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-.|..+++.|.+|+|+++.
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 36999999999999999999999999999863
No 326
>PLN02529 lysine-specific histone demethylase 1
Probab=96.96 E-value=0.001 Score=75.85 Aligned_cols=39 Identities=31% Similarity=0.362 Sum_probs=34.7
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 84 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g 84 (633)
.+.||+|||+|++||+||..|+++|++|+|+|+....+|
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 567999999999999999999999999999999755444
No 327
>PTZ00058 glutathione reductase; Provisional
Probab=96.94 E-value=0.011 Score=66.10 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=29.9
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-.|..+++.|.+|.|++++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~ 269 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARG 269 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEec
Confidence 36999999999999999999999999999985
No 328
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.93 E-value=0.0099 Score=65.18 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=30.0
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|..|+-.|..+++.|.+|.|+++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~ 201 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERG 201 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 36999999999999999999999999999985
No 329
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.92 E-value=0.0011 Score=75.94 Aligned_cols=39 Identities=36% Similarity=0.389 Sum_probs=34.9
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 84 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g 84 (633)
...+|+|||+|++|++||+.|++.|.+|+|+|+....+|
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 457899999999999999999999999999999765544
No 330
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.88 E-value=0.013 Score=63.80 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=29.4
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||+|..|+-.|..+++.|.+|+|++++
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~ 190 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAA 190 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 6999999999999999999999999999985
No 331
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.86 E-value=0.012 Score=64.79 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=29.0
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.++|||||..|+-.|..+++.|.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 5999999999999999999999999999863
No 332
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.85 E-value=0.0087 Score=64.30 Aligned_cols=33 Identities=39% Similarity=0.429 Sum_probs=31.3
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
.+|+|||+|.+|+.+|..|+++|.+|+++|+..
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~ 169 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAAD 169 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEccc
Confidence 689999999999999999999999999999863
No 333
>PRK14727 putative mercuric reductase; Provisional
Probab=96.80 E-value=0.017 Score=63.73 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=28.9
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||+|..|+-.|..+++.|.+|+|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 6999999999999999999999999999863
No 334
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.72 E-value=0.013 Score=63.83 Aligned_cols=31 Identities=35% Similarity=0.467 Sum_probs=29.5
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||||..|+-.|..+++.|.+|.|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 180 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRS 180 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecc
Confidence 6999999999999999999999999999985
No 335
>PRK13748 putative mercuric reductase; Provisional
Probab=96.72 E-value=0.016 Score=65.26 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=29.2
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||+|..|+-.|..+++.|.+|+|+++.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 6999999999999999999999999999874
No 336
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.72 E-value=0.016 Score=64.12 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=28.7
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEee
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITK 78 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk 78 (633)
.|+|||+|..|+-.|..+++.|.+|.|+++
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 699999999999999999999999999986
No 337
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.71 E-value=0.018 Score=65.28 Aligned_cols=31 Identities=19% Similarity=0.086 Sum_probs=29.4
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||||..|+-.|..+++.|.+|+|+|+.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~ 344 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYS 344 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 6999999999999999999999999999985
No 338
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.69 E-value=0.012 Score=60.22 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=46.2
Q ss_pred HHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCc
Q 046556 189 TLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGY 246 (633)
Q Consensus 189 ~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 246 (633)
.+.+.+.+.|+.+++++.|+....+.+| .+-+.+.+..+++..++.||.+++|+|-.
T Consensus 257 ~~qr~L~kQgikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~DvlLVsiGRr 313 (506)
T KOG1335|consen 257 AFQRVLQKQGIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECDVLLVSIGRR 313 (506)
T ss_pred HHHHHHHhcCceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence 3444455679999999999999886566 55678888889999999999999999954
No 339
>PRK07846 mycothione reductase; Reviewed
Probab=96.68 E-value=0.021 Score=62.43 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=30.1
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||..|+-.|..+++.|.+|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 198 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRS 198 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC
Confidence 47999999999999999999999999999985
No 340
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.66 E-value=0.014 Score=69.19 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=29.5
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||..|+-+|..|.+.|++|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 36999999999999999999999999999874
No 341
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.61 E-value=0.0026 Score=73.65 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.9
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
....|+|||+||||++||..|++.|++|+|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 34579999999999999999999999999999853
No 342
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.60 E-value=0.021 Score=60.21 Aligned_cols=31 Identities=29% Similarity=0.258 Sum_probs=28.5
Q ss_pred cEEEECCchHHHHHHHHHHhCCCc-EEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFN-TACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~-V~vlEk~ 79 (633)
.|+|||+|..|+-+|..+.+.|.+ |.|+++.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 699999999999999999999987 9999874
No 343
>PLN02546 glutathione reductase
Probab=96.54 E-value=0.029 Score=62.66 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=29.7
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||..|+-.|..+++.|.+|.|+++.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~ 284 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQ 284 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEec
Confidence 37999999999999999999999999999985
No 344
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.53 E-value=0.0026 Score=64.06 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=35.1
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCccc
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTV 87 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t~ 87 (633)
...+|.|||+|++||+||+.|+++ .+|+|+|.+...+|++.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccc
Confidence 345799999999999999999997 79999999877766554
No 345
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.45 E-value=0.035 Score=60.70 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=29.9
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.++|||+|..|+-.|..+++.|.+|+|+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~ 201 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRS 201 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 36999999999999999999999999999985
No 346
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.41 E-value=0.0043 Score=65.32 Aligned_cols=39 Identities=33% Similarity=0.400 Sum_probs=32.3
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCCCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFPTRS 84 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~~~g 84 (633)
....|+|||+|+|||+||.+|-+.|. +|+|+|.....+|
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 34579999999999999999998765 8999998655443
No 347
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.38 E-value=0.004 Score=67.21 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=30.9
Q ss_pred ccEEEECCchHHHHHHHHH-HhCCCcEEEEeecCCCC
Q 046556 48 YDAVVVGAGGAGLRAAIGL-SEHGFNTACITKLFPTR 83 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~a-a~~G~~V~vlEk~~~~~ 83 (633)
.-|+|||||||||.||..+ ++.|++|.|+||.+.++
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 4599999999999999976 46799999999986653
No 348
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.37 E-value=0.025 Score=59.75 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 188 HTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 188 ~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
+......+++||+++.++.+.++..+.+|+++-|.. .+|+. +.||.||+.+|.-.
T Consensus 259 ~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l---~dg~~--l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 259 QFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKL---KDGKT--LEADLVVVGIGIKP 313 (478)
T ss_pred HHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEe---ccCCE--eccCeEEEeecccc
Confidence 344455678899999999999999877799988877 45654 89999999999654
No 349
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.35 E-value=0.031 Score=60.55 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=39.6
Q ss_pred cCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCC
Q 046556 399 GGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPG 467 (633)
Q Consensus 399 GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~ 467 (633)
|+|.||+..|+ |++||+||+|||+ .+.+... ......|.-.|+.+|+++...+.+.
T Consensus 295 G~I~Vd~~l~~---------~~~~~IfAiGD~a--~~~~~~~--~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 295 GRISVDDHLRV---------KPIPNVFALGDCA--ANEERPL--PTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CcEEeCCCccc---------CCCCCEEEEeccc--cCCCCCC--CCchHHHHHHHHHHHHHHHHHhcCC
Confidence 78888877651 6899999999997 3322111 1233456888999999999887653
No 350
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.31 E-value=0.016 Score=61.28 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCc
Q 046556 185 ALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGY 246 (633)
Q Consensus 185 ~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 246 (633)
.+.....+.+++.||++++++.|+++.. + ++.+ .+|+. .|.++.||-|+|-.
T Consensus 210 ~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~----~v~~---~~g~~-~I~~~tvvWaaGv~ 261 (405)
T COG1252 210 KLSKYAERALEKLGVEVLLGTPVTEVTP--D----GVTL---KDGEE-EIPADTVVWAAGVR 261 (405)
T ss_pred HHHHHHHHHHHHCCCEEEcCCceEEECC--C----cEEE---ccCCe-eEecCEEEEcCCCc
Confidence 3344445566788999999999999954 2 3444 34543 69999999999943
No 351
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.28 E-value=0.029 Score=62.99 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=29.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||..|+-.|..+++.|.+|+++++.
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~ 175 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVRE 175 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeC
Confidence 36999999999999999999999999999985
No 352
>PLN03000 amine oxidase
Probab=96.26 E-value=0.0053 Score=70.68 Aligned_cols=39 Identities=31% Similarity=0.384 Sum_probs=34.9
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 84 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g 84 (633)
...+|+|||+|++||.||..|++.|++|+|+|+....+|
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 357899999999999999999999999999999766554
No 353
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.23 E-value=0.0051 Score=63.80 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=31.4
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcE--EEEeecCCCCC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNT--ACITKLFPTRS 84 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V--~vlEk~~~~~g 84 (633)
..+|+|||||++||+||++|++++-+| +|+|+....+|
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 468999999999999999999997655 56898765544
No 354
>PLN02976 amine oxidase
Probab=96.21 E-value=0.0058 Score=72.97 Aligned_cols=40 Identities=33% Similarity=0.436 Sum_probs=35.3
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCc
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 85 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~ 85 (633)
...||+|||+|++|+++|+.|++.|.+|+|+|+....+|.
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 3579999999999999999999999999999997655543
No 355
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.79 E-value=0.067 Score=64.22 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=38.4
Q ss_pred HHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 193 QAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 193 ~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
.+++.||+++.++.++++.. ++++.+|.+.. .+|+...+.||.|+++.|-..
T Consensus 360 ~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~-~~g~~~~i~~D~V~va~G~~P 411 (985)
T TIGR01372 360 EARELGIEVLTGHVVAATEG--GKRVSGVAVAR-NGGAGQRLEADALAVSGGWTP 411 (985)
T ss_pred HHHHcCCEEEcCCeEEEEec--CCcEEEEEEEe-cCCceEEEECCEEEEcCCcCc
Confidence 34567999999999988854 45677777653 234445699999999999544
No 356
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=95.65 E-value=0.028 Score=65.33 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=44.5
Q ss_pred HHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcC------C------C-------------eEEEEEcCeEEEccCCc
Q 046556 192 GQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNME------D------G-------------TLHRFRAASTILATGGY 246 (633)
Q Consensus 192 ~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~------~------G-------------~~~~i~A~~VVlAtGg~ 246 (633)
+.|.+.||++.+.+..++++.|++|++.|+.+.... . + ....|.||.||+|.|--
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~ 727 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE 727 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccC
Confidence 456788999999999999998677999999886432 1 2 44679999999999954
Q ss_pred C
Q 046556 247 G 247 (633)
Q Consensus 247 ~ 247 (633)
.
T Consensus 728 ~ 728 (1028)
T PRK06567 728 N 728 (1028)
T ss_pred C
Confidence 3
No 357
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.64 E-value=0.01 Score=64.25 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=31.6
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
-.|.|||||||||+||..|+++|++|+++|+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 5799999999999999999999999999998644
No 358
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.085 Score=53.38 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHh-CCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccC
Q 046556 192 GQAMK-HNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATG 244 (633)
Q Consensus 192 ~~a~~-~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 244 (633)
++++. .+++|+.+..-+++.- ++.+|+|....+..+|+.+.+.=..|++--|
T Consensus 397 ~kl~sl~Nv~ii~na~Ttei~G-dg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIG 449 (520)
T COG3634 397 DKLRSLPNVTIITNAQTTEVKG-DGDKVTGLEYRDRVSGEEHHLELEGVFVQIG 449 (520)
T ss_pred HHHhcCCCcEEEecceeeEEec-CCceecceEEEeccCCceeEEEeeeeEEEEe
Confidence 33333 4899999999999987 5689999999988888876665565665555
No 359
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.13 Score=52.81 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=38.1
Q ss_pred HHhC-CCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCC
Q 046556 194 AMKH-NTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGG 245 (633)
Q Consensus 194 a~~~-gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 245 (633)
+++. ++++++++.+.++.- ++ +.+|...+.. |+...+..+.|+++.|.
T Consensus 188 l~~~~~i~~~~~~~i~ei~G-~~--v~~v~l~~~~-~~~~~~~~~gvf~~iG~ 236 (305)
T COG0492 188 LKKNVKIEVLTNTVVKEILG-DD--VEGVVLKNVK-GEEKELPVDGVFIAIGH 236 (305)
T ss_pred HHhcCCeEEEeCCceeEEec-Cc--cceEEEEecC-CceEEEEeceEEEecCC
Confidence 3444 899999999999976 33 8888887644 77778999999999993
No 360
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.37 E-value=0.019 Score=61.60 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEc
Q 046556 185 ALLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILA 242 (633)
Q Consensus 185 ~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlA 242 (633)
++.+.+.+.+.-.|..++.++.|.++..|++++++||.. +|+. ++|+.||..
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s----~ge~--v~~k~vI~d 284 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS----EGEV--VKAKKVIGD 284 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE----TTEE--EEESEEEEE
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec----CCEE--EEcCEEEEC
Confidence 888889888888899999999999999877799998764 5664 899999854
No 361
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.23 E-value=0.16 Score=53.78 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=33.4
Q ss_pred HHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 190 LYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 190 l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
+.+.+++.||+++.++.++++.. + ++.+ .+|+ .+.+|.||+|+|...
T Consensus 197 ~~~~l~~~gV~v~~~~~v~~i~~---~---~v~~---~~g~--~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 197 VLRLLARRGIEVHEGAPVTRGPD---G---ALIL---ADGR--TLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHCCCEEEeCCeeEEEcC---C---eEEe---CCCC--EEecCEEEEccCCCh
Confidence 44556678999999999888732 2 2333 4565 489999999999543
No 362
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.03 E-value=0.24 Score=56.82 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=33.1
Q ss_pred CcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCCC
Q 046556 419 EVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRPG 467 (633)
Q Consensus 419 T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~~ 467 (633)
|++||+||+||++ .+. .....|+..|++||.+|..++.+.
T Consensus 464 Ts~pgVfA~GDv~-~g~--------~~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 464 TSVAGVFAGGDCV-TGA--------DIAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred CCCCCEEEcCCcC-CCc--------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999997 221 345688999999999999999753
No 363
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.56 E-value=0.28 Score=51.09 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHH---hCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccC
Q 046556 184 HALLHTLYGQAM---KHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATG 244 (633)
Q Consensus 184 ~~l~~~l~~~a~---~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 244 (633)
.++...|+++-. +..+.++..++|..+....+|+ .-+.+....+|+..++..|+||+|||
T Consensus 275 ~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D~vIlATG 337 (436)
T COG3486 275 EEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETDAVILATG 337 (436)
T ss_pred HHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEeeEEEEecc
Confidence 355566666633 2368999999999998744455 44555555678888899999999999
No 364
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.56 E-value=0.8 Score=47.86 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=32.6
Q ss_pred ccccccEEEECCchHHHHHHHHHHhCC-CcEEEEeecC
Q 046556 44 VDHTYDAVVVGAGGAGLRAAIGLSEHG-FNTACITKLF 80 (633)
Q Consensus 44 ~~~~~DVlIIGgG~AGl~AA~~aa~~G-~~V~vlEk~~ 80 (633)
+...+|++.||-||+-|+.|+.+.+.+ .+++.+||.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp 39 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKP 39 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCC
Confidence 446799999999999999999999975 7899999964
No 365
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=94.55 E-value=0.041 Score=63.22 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=33.2
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPT 82 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~ 82 (633)
.-..|.|||+|||||+||-.|-+.|+.|+|.||....
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 3457999999999999999999999999999997654
No 366
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.32 E-value=0.5 Score=52.11 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=32.6
Q ss_pred CcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 046556 419 EVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRP 466 (633)
Q Consensus 419 T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~ 466 (633)
|++||+||+|||+ ++ ......|+..|++||.+|..++.+
T Consensus 442 Ts~~gVfAaGD~~-~g--------~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 442 TSIPGVFAAGDCR-RG--------QSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred ECCCCEEEeeccC-CC--------cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999997 32 134567899999999999999865
No 367
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.25 E-value=0.055 Score=55.49 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=31.3
Q ss_pred cEEEECCchHHHHHHHHHHhC--CCcEEEEeecCCCCC
Q 046556 49 DAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFPTRS 84 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~~~~~g 84 (633)
-|.|||+||||+.+|..|-++ +++|.|+||.+.+.|
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 599999999999999999884 689999999876544
No 368
>PLN02852 ferredoxin-NADP+ reductase
Probab=94.11 E-value=0.65 Score=50.93 Aligned_cols=48 Identities=13% Similarity=0.204 Sum_probs=37.0
Q ss_pred CCCEEEEEEEEEEEEEc--cCCcEEEEEEEEc--------------CCCeEEEEEcCeEEEccC
Q 046556 197 HNTQFFVEYFALDLIMN--SDGTCQGVIALNM--------------EDGTLHRFRAASTILATG 244 (633)
Q Consensus 197 ~gv~i~~~~~v~~L~~d--~~g~v~Gv~~~~~--------------~~G~~~~i~A~~VVlAtG 244 (633)
.++.+++....++++.+ ++++|.|+.+... .+|+...+.++.||.|.|
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG 351 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIG 351 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeec
Confidence 47888888888999842 2378999988631 156677899999999998
No 369
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.049 Score=54.73 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=29.6
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.-|.|||+|.||.-||+.++++|.+|.|.|-.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMR 35 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMR 35 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcc
Confidence 34899999999999999999999999999964
No 370
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.81 E-value=0.079 Score=54.98 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=29.1
Q ss_pred ccccEEEECCchHHHHHHHHHHhC----CCcEEEEeec
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEH----GFNTACITKL 79 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~----G~~V~vlEk~ 79 (633)
..|||||||||+.|++.|..+... -.||+|+|.+
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 469999999999998888888764 4699999976
No 371
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=92.89 E-value=0.78 Score=54.49 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=28.0
Q ss_pred ccEEEECCchHHHHHHHHHHhC-CC-cEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEH-GF-NTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~-G~-~V~vlEk~ 79 (633)
-.|+|||||..|+-+|..+.+. |. +|.|+++.
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr 700 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEcc
Confidence 3699999999999999998876 86 79999875
No 372
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=92.85 E-value=0.87 Score=53.94 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=27.7
Q ss_pred ccEEEECCchHHHHHHHHHHhC-C-CcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEH-G-FNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~-G-~~V~vlEk~ 79 (633)
-.|+|||||..|+-+|..+.+. | .+|.|+.+.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr 702 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 702 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEcc
Confidence 3699999999999999998887 5 389999875
No 373
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=92.52 E-value=0.46 Score=53.17 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 190 LYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 190 l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
|.+...+.|++++++...+.+.. .+++.++.. .+|.. +.|+-||.|+|-..+
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~---~DG~~--i~ad~VV~a~GIrPn 244 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRF---ADGTE--IPADLVVMAVGIRPN 244 (793)
T ss_pred HHHHHHhhcceeecccchhhhhc--CcceeeEee---cCCCc--ccceeEEEecccccc
Confidence 44556678999999877766654 578888877 56754 899999999996553
No 374
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=90.66 E-value=0.35 Score=43.90 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=29.0
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
|+|+|+|..|+..|..|++.|.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999863
No 375
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=90.49 E-value=0.31 Score=48.71 Aligned_cols=44 Identities=39% Similarity=0.582 Sum_probs=37.3
Q ss_pred CcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHh
Q 046556 419 EVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQ 464 (633)
Q Consensus 419 T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~ 464 (633)
.-+||||++|=.+ ..+||.+|+| --++..+.+|+.||+.|.+.+
T Consensus 210 ~~~~g~~~~gm~~-~~~~~~~rmg-p~fg~m~~sg~~~a~~~~~~~ 253 (254)
T TIGR00292 210 EVVPNLYVAGMAV-AAVHGLPRMG-PIFGGMLLSGKHVAEQILEKL 253 (254)
T ss_pred cccCCEEEechhh-hhhcCCCCcC-chHHHHHHhhHHHHHHHHHHh
Confidence 5699999999987 5899999997 456677899999999987754
No 376
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=90.47 E-value=0.28 Score=45.14 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=28.4
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
|.|||+|..|.+.|..++++|.+|.|..+.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 789999999999999999999999999874
No 377
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.98 E-value=0.28 Score=41.57 Aligned_cols=32 Identities=31% Similarity=0.316 Sum_probs=29.4
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||..|..-+..|.+.|++|+|+.+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 46999999999999999999999999999875
No 378
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.91 E-value=0.3 Score=53.49 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=28.8
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
|+|||.|++|++||..|.++|++|++.|+.
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~ 32 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRN 32 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 899999999999999999999999999985
No 379
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=89.80 E-value=0.23 Score=53.92 Aligned_cols=50 Identities=12% Similarity=-0.002 Sum_probs=32.6
Q ss_pred HhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcCC
Q 046556 195 MKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYGR 248 (633)
Q Consensus 195 ~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~ 248 (633)
.+.|++++.++.|+++.. ++..+ .+.+..+++...+.+|.||+|||+...
T Consensus 55 ~~~gv~~~~~~~V~~id~-~~~~v---~~~~~~~~~~~~~~yd~lIiATG~~p~ 104 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVND-ERQTV---VVRNNKTNETYEESYDYLILSPGASPI 104 (427)
T ss_pred HhcCCeEEecCEEEEEEC-CCCEE---EEEECCCCCEEecCCCEEEECCCCCCC
Confidence 567999988899999876 44432 333212333322339999999998553
No 380
>PRK04148 hypothetical protein; Provisional
Probab=89.69 E-value=1.4 Score=38.99 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=27.6
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.+++||.| .|...|..|++.|.+|+.+|..
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEEECC
Confidence 59999999 9998899999999999999975
No 381
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=89.63 E-value=0.3 Score=49.09 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=29.5
Q ss_pred cccccEEEECCchHHHHHHHHHHhC-CC-cEEEEeec
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEH-GF-NTACITKL 79 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~-G~-~V~vlEk~ 79 (633)
..++.|||||||.+|+..|....++ |. +|.|+|-.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~ 73 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA 73 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence 4678999999999999999999875 43 78898864
No 382
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=89.61 E-value=0.36 Score=46.13 Aligned_cols=45 Identities=36% Similarity=0.580 Sum_probs=37.6
Q ss_pred CcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 046556 419 EVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQR 465 (633)
Q Consensus 419 T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~ 465 (633)
.-.||||++|=.+ .-+||++|+| --++..+.+|+.||+.+.+.++
T Consensus 216 eV~pgL~vaGMa~-~av~G~pRMG-PiFGgMllSGkkaAe~i~e~L~ 260 (262)
T COG1635 216 EVYPGLYVAGMAV-NAVHGLPRMG-PIFGGMLLSGKKAAEEILEKLK 260 (262)
T ss_pred cccCCeEeehhhH-HhhcCCcccC-chhhhhhhchHHHHHHHHHHhh
Confidence 5699999999988 4899999997 4456678899999998887664
No 383
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=89.45 E-value=0.39 Score=48.11 Aligned_cols=45 Identities=38% Similarity=0.574 Sum_probs=38.3
Q ss_pred CcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 046556 419 EVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQR 465 (633)
Q Consensus 419 T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~ 465 (633)
.-.||||++|=.+ ..+||.+|+| --++..+.+|+.||+.|.+.++
T Consensus 211 ~~~~g~~~~gm~~-~~~~~~~rmg-~~fg~m~~sg~~~a~~~~~~~~ 255 (257)
T PRK04176 211 EVYPGLYVAGMAA-NAVHGLPRMG-PIFGGMLLSGKKVAELILEKLK 255 (257)
T ss_pred eEcCCEEEeehhh-hhhcCCCccC-chhHhHHHhHHHHHHHHHHHhh
Confidence 5699999999988 5899999997 4566778999999999988764
No 384
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.36 E-value=0.4 Score=52.85 Aligned_cols=31 Identities=32% Similarity=0.367 Sum_probs=29.2
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||+|.+|+.+|..|+++|.+|+++|+.
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5999999999999999999999999999974
No 385
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.03 E-value=0.44 Score=45.52 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=28.7
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
.-.|+|||+|.++.-+|..|++.|.+|.++-|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 3579999999999999999999999999998864
No 386
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.76 E-value=0.52 Score=45.45 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=29.1
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||||..|...+..|.+.|++|+|++..
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5999999999999999999999999999864
No 387
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=88.62 E-value=0.39 Score=51.51 Aligned_cols=47 Identities=21% Similarity=0.175 Sum_probs=33.4
Q ss_pred HHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCc
Q 046556 193 QAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGY 246 (633)
Q Consensus 193 ~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 246 (633)
.+...|.+|+++++|++|.. ++++|. +.. .+|+ .+.||.||+|+...
T Consensus 218 ~~~~~g~~i~l~~~V~~I~~-~~~~v~-v~~---~~g~--~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 218 AAEELGGEIRLNTPVTRIER-EDGGVT-VTT---EDGE--TIEADAVISAVPPS 264 (450)
T ss_dssp HHHHHGGGEESSEEEEEEEE-ESSEEE-EEE---TTSS--EEEESEEEE-S-HH
T ss_pred HHhhcCceeecCCcceeccc-cccccc-ccc---ccce--EEecceeeecCchh
Confidence 33445779999999999999 566654 333 5666 58999999999854
No 388
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=88.06 E-value=2.8 Score=40.22 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=41.0
Q ss_pred HHHHh-CCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccC
Q 046556 192 GQAMK-HNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATG 244 (633)
Q Consensus 192 ~~a~~-~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtG 244 (633)
+++++ -+|++++++.+.+.+- +.+.+-|+.+.+..+|+...+..+.++.|-|
T Consensus 200 ~ra~~npnI~v~~nt~~~ea~g-d~~~l~~l~ikn~~tge~~dl~v~GlFf~IG 252 (322)
T KOG0404|consen 200 QRAEKNPNIEVLYNTVAVEALG-DGKLLNGLRIKNVKTGEETDLPVSGLFFAIG 252 (322)
T ss_pred HHHhcCCCeEEEechhhhhhcc-CcccccceEEEecccCcccccccceeEEEec
Confidence 34443 4899999998888877 4566777888888899988899998988887
No 389
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=87.46 E-value=0.41 Score=46.80 Aligned_cols=30 Identities=33% Similarity=0.348 Sum_probs=26.2
Q ss_pred EEEECCchHHHHHHHHHHhC--CCcEEEEeec
Q 046556 50 AVVVGAGGAGLRAAIGLSEH--GFNTACITKL 79 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~--G~~V~vlEk~ 79 (633)
.||||||+||.+||-.++.. .+.|+|+...
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 68999999999999999975 5689998865
No 390
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=87.42 E-value=0.78 Score=42.68 Aligned_cols=32 Identities=28% Similarity=0.204 Sum_probs=28.5
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
..|+|+|+|.+|..||..|...|++|+++|..
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 56999999999999999999999999999974
No 391
>PLN02661 Putative thiazole synthesis
Probab=87.29 E-value=0.65 Score=48.34 Aligned_cols=45 Identities=27% Similarity=0.526 Sum_probs=39.1
Q ss_pred CcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 046556 419 EVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQR 465 (633)
Q Consensus 419 T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~ 465 (633)
.-+||||++|=.+ ..+||.+|+| --++..+.+|+.||+.|.+.++
T Consensus 284 ev~pgl~~~gm~~-~~~~g~~rmg-p~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 284 EVVPGMIVTGMEV-AEIDGSPRMG-PTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred cccCCEEEeccch-hhhcCCCccC-chhHhHHhhhHHHHHHHHHHHc
Confidence 5699999999987 5899999997 4566778999999999998875
No 392
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=87.26 E-value=0.33 Score=50.33 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=35.8
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCc
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 85 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~ 85 (633)
+.+|||+|+|.|.-=|..+..|+..|.+|+.+||+...++-
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~ 42 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGE 42 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcc
Confidence 34699999999999999999999999999999998665443
No 393
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.19 E-value=0.77 Score=43.26 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.6
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
|.|||+|..|..-|..++..|++|.++|..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 789999999999999999999999999985
No 394
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=86.97 E-value=0.66 Score=46.30 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=27.5
Q ss_pred ccEEEECCchHHHHHHHHHHhCC-------CcEEEEeecCCC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHG-------FNTACITKLFPT 82 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G-------~~V~vlEk~~~~ 82 (633)
.+|+|||+|..||++|+.+.+.. ++|.|++-....
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 57999999999999998888743 578888654333
No 395
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=86.78 E-value=0.9 Score=48.02 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=30.4
Q ss_pred CcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 046556 419 EVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRP 466 (633)
Q Consensus 419 T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~ 466 (633)
..+||||+||+.+ |+.| ..+|..+|.+||.+|+.++++
T Consensus 353 k~~~~lf~AGqi~--G~~G--------y~eaaa~G~~ag~na~~~~~g 390 (392)
T PF01134_consen 353 KKIPGLFFAGQIN--GTEG--------YEEAAAQGLIAGINAARRLQG 390 (392)
T ss_dssp SSSBTEEE-GGGG--TB-S--------HHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCceECCCCc--chhH--------HHHHHHHHHHHHHHHHHHHcC
Confidence 4599999999997 4443 568899999999999998865
No 396
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.78 E-value=0.66 Score=48.17 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=36.1
Q ss_pred cccccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCc
Q 046556 45 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 85 (633)
Q Consensus 45 ~~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~ 85 (633)
+.++||||||.|..=...|..+++.|.+|+=+|.....+|+
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~ 46 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN 46 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCc
Confidence 45799999999999999999999999999999998665554
No 397
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.70 E-value=1.1 Score=40.00 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=29.4
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCc-EEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFN-TACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~-V~vlEk~ 79 (633)
...++|||+|.+|-.++..|++.|.+ |.|+.|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35699999999999999999999986 8888874
No 398
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.27 E-value=0.95 Score=44.33 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.++|||+|-.|...|-.|.+.|..|+++|+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 4899999999999999999999999999986
No 399
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=86.07 E-value=1.1 Score=46.23 Aligned_cols=37 Identities=27% Similarity=0.209 Sum_probs=33.8
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecCCCC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTR 83 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~ 83 (633)
.|||+|+|.|+-=+..+..|+..|.+|+.+||+...+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccC
Confidence 6999999999999999999999999999999986543
No 400
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=85.79 E-value=0.92 Score=48.05 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=30.3
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
..+|+|||+|.+|+.+|..|...|++|.++++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 356999999999999999999999999999874
No 401
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=85.79 E-value=0.99 Score=43.40 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=29.3
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||-.|...|..|.+.|++|+|+++.
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 46999999999999999999999999999763
No 402
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.78 E-value=1 Score=41.38 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=28.9
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEee
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITK 78 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk 78 (633)
.-.|+|||||..|..-|..|.+.|++|+|+..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 34699999999999999999999999999954
No 403
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.65 E-value=0.89 Score=49.66 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=29.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|.+|+.+|..|++.|++|+++|+.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45999999999999999999999999999885
No 404
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.42 E-value=0.97 Score=49.66 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=30.1
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.-.|+|+|+|++|+.|+..|...|++|.++|..
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456999999999999999999999999999874
No 405
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=84.85 E-value=0.89 Score=43.04 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=25.2
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
|.|||.|-.||..|..+++.|++|+.+|..
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence 889999999999999999999999999974
No 406
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.59 E-value=0.83 Score=45.92 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=31.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
..-+|+|||||.+|..||--|.-.|++|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 3468999999999999999999999999999985
No 407
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=84.21 E-value=2.4 Score=43.18 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=29.0
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
..||||+|-.+|-||-.|+--|++|+|+-|.
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRS 230 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRS 230 (503)
T ss_pred ceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence 4799999999999999999999999999885
No 408
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=83.58 E-value=1.6 Score=44.97 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=29.3
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||+|+-|...|..|++.|.+|.++.+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 5999999999999999999999999999985
No 409
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=82.92 E-value=1.7 Score=43.57 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=31.5
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
....|+|||.|..|..+|..|++.|. +++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 35679999999999999999999995 8999997643
No 410
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=82.77 E-value=1.9 Score=44.53 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=29.3
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|||+|.-|..-|..|+++|.+|.++.+.
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 4999999999999999999999999999885
No 411
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=82.68 E-value=1.5 Score=45.20 Aligned_cols=31 Identities=23% Similarity=0.243 Sum_probs=29.3
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|.-|...|..++++|++|+++++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 4999999999999999999999999999985
No 412
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=82.63 E-value=0.43 Score=48.24 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=32.7
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
++||+|||||.||++||++|+++|++++||.++..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 58999999999999999999999999999998754
No 413
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.61 E-value=1.5 Score=46.83 Aligned_cols=32 Identities=28% Similarity=0.231 Sum_probs=29.6
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|+|.|+.|+.+|..|...|++|+++|..
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d 234 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD 234 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 46999999999999999999999999999875
No 414
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=82.45 E-value=8.3 Score=40.80 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=34.4
Q ss_pred HHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCcC
Q 046556 190 LYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGYG 247 (633)
Q Consensus 190 l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~ 247 (633)
..++..+.|+++..++.|.++.- ..+ .+.+ .+|+...|..--+|=|||--.
T Consensus 279 ae~~f~~~~I~~~~~t~Vk~V~~---~~I---~~~~-~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 279 AENQFVRDGIDLDTGTMVKKVTE---KTI---HAKT-KDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred HHHHhhhccceeecccEEEeecC---cEE---EEEc-CCCceeeecceEEEecCCCCC
Confidence 34455677999999998888732 222 2222 478877788888888988433
No 415
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=82.10 E-value=1.6 Score=47.67 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=29.9
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||..|+-+|..|.+.|.+|+|+++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 36999999999999999999999999999985
No 416
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=81.91 E-value=1.7 Score=44.55 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=28.3
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEee
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITK 78 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk 78 (633)
.|+|||+|..|+..|..|+++|.+|.++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 389999999999999999999999999987
No 417
>PRK12831 putative oxidoreductase; Provisional
Probab=81.74 E-value=1.6 Score=47.87 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=29.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||||..|+-+|..|.+.|.+|+|+++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 37999999999999999999999999999874
No 418
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.46 E-value=2.3 Score=36.43 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=27.1
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
|+|+|.|..|...+-.|.+.+.+|+++|+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 789999999999999999987799999986
No 419
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=81.38 E-value=1.3 Score=47.42 Aligned_cols=33 Identities=36% Similarity=0.566 Sum_probs=31.4
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
+||+|||+|++|+++|+.+++.|.+|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 699999999999999999999999999999874
No 420
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=80.97 E-value=4.7 Score=43.17 Aligned_cols=55 Identities=9% Similarity=0.049 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCEEEEEEEEEEEEEccCCcEEEEEEEEcCCCeEEEEEcCeEEEccCCc
Q 046556 186 LLHTLYGQAMKHNTQFFVEYFALDLIMNSDGTCQGVIALNMEDGTLHRFRAASTILATGGY 246 (633)
Q Consensus 186 l~~~l~~~a~~~gv~i~~~~~v~~L~~d~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~ 246 (633)
+...|.+.+++.|++|+++++|++|.. ++++++.+.. .+|+ .+.||.||+|+-..
T Consensus 199 ~~~~l~~~l~~~g~~i~~~~~V~~i~~-~~~~~~~~~~---~~g~--~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 199 FPEPARRWLDSRGGEVRLGTRVRSIEA-NAGGIRALVL---SGGE--TLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHHHcCCEEEcCCeeeEEEE-cCCcceEEEe---cCCc--cccCCEEEEcCCHH
Confidence 345577788888999999999999998 4555443222 2454 37899999987744
No 421
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=80.91 E-value=2.1 Score=41.01 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=31.0
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLF 80 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~ 80 (633)
....|+|||+|.-|...|..|++.|. +++|+|...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 34679999999999999999999998 699999863
No 422
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=80.90 E-value=2.5 Score=41.83 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=31.8
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFPT 82 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~~ 82 (633)
....|+|||.|..|..+|..|++.|. +++|+|.....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 34679999999999999999999997 88888886543
No 423
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=80.61 E-value=2 Score=43.97 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=28.4
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
|+|||+|..|...|..|++.|.+|+++++.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 899999999999999999999999999974
No 424
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=79.93 E-value=2.3 Score=43.35 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=28.1
Q ss_pred cEEEECCchHHHHHHHHHHhCCCc-EEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFN-TACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~-V~vlEk~ 79 (633)
-++|+|+|.+|.++|..+++.|++ |.|+.+.
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 589999999999999999999986 9998874
No 425
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=79.83 E-value=2.5 Score=44.08 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=31.4
Q ss_pred cccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
+..|+|||+|..|..+|..|++.|. +++|+|....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4569999999999999999999998 8999998754
No 426
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=79.36 E-value=2.2 Score=37.89 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=29.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
.-|+|||+|.-|...|..|++.|. ++.|+|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 459999999999999999999998 7999998643
No 427
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.32 E-value=2.4 Score=43.16 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=28.9
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|..|...|..++++|.+|.+++..
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 4999999999999999999999999999974
No 428
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.20 E-value=2.5 Score=43.04 Aligned_cols=31 Identities=35% Similarity=0.409 Sum_probs=29.0
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|.-|...|..++++|.+|+++++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3899999999999999999999999999975
No 429
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=79.02 E-value=2.3 Score=43.30 Aligned_cols=32 Identities=31% Similarity=0.329 Sum_probs=28.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCCC-cEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGF-NTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~ 79 (633)
..|+|||+|.+|.++|..|++.|. +|.|+++.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 469999999999999999999997 78898874
No 430
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=78.76 E-value=2.4 Score=46.48 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=30.2
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
...|+|+|+|.+|+.++..|...|.+|++++..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999999875
No 431
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.43 E-value=2.2 Score=46.55 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=28.8
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-|+|+|+|..|+++|..|++.|++|++.|+.
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~ 37 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGK 37 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4899999999999999999999999999864
No 432
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=78.42 E-value=2.7 Score=43.89 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=32.0
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
.+..|+|||+|.-|..+|..|++.|. ++.|+|....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 34679999999999999999999998 8999998644
No 433
>PRK08328 hypothetical protein; Provisional
Probab=78.31 E-value=2.9 Score=41.08 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=31.0
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
....|+|||.|..|..+|..|++.|. ++.|+|....
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 34679999999999999999999997 7888887643
No 434
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=77.78 E-value=1.6 Score=45.01 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCEEEEEEEEEEEEEcc-CCc-EEEEEEEEcCCCeEEEEEcC-eEEEccCCcC
Q 046556 184 HALLHTLYGQAMKHNTQFFVEYFALDLIMNS-DGT-CQGVIALNMEDGTLHRFRAA-STILATGGYG 247 (633)
Q Consensus 184 ~~l~~~l~~~a~~~gv~i~~~~~v~~L~~d~-~g~-v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~ 247 (633)
..++..|...++.+||.+-.++.|.++..|. .|+ +.-++- ...+++...+.-+ .|++..|...
T Consensus 227 eSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih-~~~d~~~ieLt~dDlVfvTNgsiT 292 (587)
T COG4716 227 ESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIH-VLGDAETIELTPDDLVFVTNGSIT 292 (587)
T ss_pred HHHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHH-HhcCcceeecCCCceEEEecceec
Confidence 3567788888899999999999999998743 242 221111 1146666666665 5777777654
No 435
>PRK08223 hypothetical protein; Validated
Probab=77.56 E-value=3.4 Score=41.83 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=31.7
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
.+..|+|||.|.-|..+|..|+..|. ++.|+|....
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF 62 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 45679999999999999999999997 7888887644
No 436
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=77.41 E-value=2.7 Score=44.24 Aligned_cols=31 Identities=32% Similarity=0.297 Sum_probs=25.9
Q ss_pred cEEEECCchHHHHHHHHHHhCCC-cEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGF-NTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~ 79 (633)
.|+|+|+|+.||.++..++..|+ +|+++|..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~ 202 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS 202 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 59999999999999888888897 56666653
No 437
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=77.37 E-value=3.1 Score=40.46 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=29.4
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
...|||||||..++.=+..|.+.|++|+|+...
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 345999999999999999999999999999753
No 438
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=76.84 E-value=3.6 Score=40.33 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=28.9
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCc---EEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFN---TACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~---V~vlEk~ 79 (633)
..|+|+|+|.+|..+|..+.+.|.+ +.|+++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 4699999999999999999999975 8899985
No 439
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.37 E-value=3.2 Score=43.84 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=29.3
Q ss_pred cEEEECCchHHHHHHHHHHhCC-CcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHG-FNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G-~~V~vlEk~ 79 (633)
+|||||+|-.|..+|..|+++| .+|+|.+|.
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 5999999999999999999998 799999986
No 440
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=75.95 E-value=3.9 Score=39.31 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=31.6
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
.+..|+|||.|..|..+|..|++.|. +++|+|....
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 45679999999999999999999997 8999998643
No 441
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.55 E-value=4.1 Score=41.62 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=29.1
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|.-|...|..++++|.+|+++++.
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4999999999999999999999999999974
No 442
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=75.25 E-value=3.9 Score=41.26 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=28.2
Q ss_pred cEEEECCchHHHHHHHHHHhCCC-cEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGF-NTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~ 79 (633)
.|+|+|+|.++.++++.|++.|. +|.|+.|.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 69999999999999999999997 58898874
No 443
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.24 E-value=3.7 Score=42.47 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=28.9
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|.-|..-|..++.+|++|+++|..
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3999999999999999999999999999974
No 444
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=75.23 E-value=3.7 Score=41.93 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=28.9
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|.-|...|..++.+|.+|+++|+.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3999999999999999999999999999974
No 445
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=75.20 E-value=4.6 Score=36.23 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=29.1
Q ss_pred EEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
|+|||.|.-|...|..|++.|. ++.|+|....
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 8999999999999999999998 7999997644
No 446
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=75.15 E-value=3.7 Score=40.72 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=31.5
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
.+..|+|||.|.-|..+|..|+..|. +++|+|....
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 45789999999999999999999997 8899987643
No 447
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=75.02 E-value=3.7 Score=42.94 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=29.1
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|.-|...|..++++|.+|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 4999999999999999999999999999974
No 448
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=74.95 E-value=3.9 Score=39.23 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=28.5
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|+|.|-.|..+|..|.+.|++|++.+..
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4999999999999999999999999988753
No 449
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=74.58 E-value=3.8 Score=43.75 Aligned_cols=34 Identities=21% Similarity=0.081 Sum_probs=30.5
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
.-.|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3469999999999999999999999999998753
No 450
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=74.50 E-value=4.5 Score=39.17 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=31.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
....|+|||+|..|...|..|++.|. ++.|+|....
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 45679999999999999999999998 5999998643
No 451
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=74.35 E-value=4.8 Score=37.65 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=28.5
Q ss_pred EEEECCchHHHHHHHHHHhCCC-cEEEEeecC
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGF-NTACITKLF 80 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~ 80 (633)
|+|||.|..|...|..|++.|. ++.|+|...
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 8999999999999999999998 599999863
No 452
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.29 E-value=4.5 Score=41.18 Aligned_cols=31 Identities=26% Similarity=0.258 Sum_probs=29.2
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|.-|..-|..++.+|++|+++|..
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 37 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETT 37 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECC
Confidence 4999999999999999999999999999985
No 453
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=74.27 E-value=4 Score=41.79 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.4
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
...|+|||.|.+|..+|..|...|.+|.++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 457999999999999999999999999999885
No 454
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=73.89 E-value=4 Score=42.74 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=29.2
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|-.||+.|.-+++.|++|+.+|..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 3789999999999999999999999999985
No 455
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.77 E-value=4.2 Score=41.93 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=28.1
Q ss_pred cEEEECCchHHHHHHHHHHhCC--CcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHG--FNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G--~~V~vlEk~ 79 (633)
.|.|||+|..|.++|+.++..| ..|+++|+.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 4899999999999999999999 479999975
No 456
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=73.74 E-value=5 Score=37.26 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=29.6
Q ss_pred ccccEEEECCch-HHHHHHHHHHhCCCcEEEEeec
Q 046556 46 HTYDAVVVGAGG-AGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 46 ~~~DVlIIGgG~-AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
....|+|||+|- +|..+|..|.++|.+|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 346799999996 7999999999999999998874
No 457
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.14 E-value=4.6 Score=41.05 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=28.8
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEee
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITK 78 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk 78 (633)
.-..|||.|+||.||.+-+.|.-.|+ +|++.|-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence 34679999999999999999999997 7888775
No 458
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.93 E-value=4.3 Score=44.24 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=28.9
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|+|.|.+|+++|..|+++|++|++.|..
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~ 37 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAE 37 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4999999999999999999999999999864
No 459
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=72.84 E-value=4.2 Score=47.58 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=39.1
Q ss_pred cCcccCCCCceeeecCCCCCCcccCeeeecccccccccCCCCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 046556 399 GGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIQRP 466 (633)
Q Consensus 399 GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a~~g~~Ga~rlgg~~l~~a~~~G~~Ag~~aa~~~~~ 466 (633)
|.|.+|++.+ |++||+||+|||+ .+ ...+..|+..|++||.+|.+++.+
T Consensus 703 G~i~vd~~~~----------Ts~~gVfA~GD~~-~g--------~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 703 GTIVVDEEMQ----------SSIPGIYAGGDIV-RG--------GATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CCEEeCCCCC----------CCCCCEEEeCCcc-CC--------cHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5677776654 9999999999997 22 235678899999999999998753
No 460
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.73 E-value=4 Score=45.11 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=28.5
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|+|.|.+|++++..|...|++|++.|..
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4999999999999999999999999998853
No 461
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=72.69 E-value=3.5 Score=36.83 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=26.7
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
++|+|+|..+...|.-++..|++|+|+|-.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 589999999999999999999999999965
No 462
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=72.57 E-value=3.9 Score=45.52 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=28.7
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|+|+|.+|.++|..|++.|.+|+++.+.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35999999999999999999999999988763
No 463
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=71.85 E-value=4.7 Score=40.95 Aligned_cols=32 Identities=34% Similarity=0.404 Sum_probs=28.0
Q ss_pred ccEEEECCchHHHHHHHHHHhCCC-cEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGF-NTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~ 79 (633)
..|+|+|+|.++-++++.|++.|. ++.|+.|.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 359999999999999999999997 67888774
No 464
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.55 E-value=5.2 Score=40.57 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=28.9
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|..|...|..++++|.+|+++|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCC
Confidence 4999999999999999999999999999874
No 465
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=71.19 E-value=5.3 Score=41.11 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=27.6
Q ss_pred cEEEECCchHHHHHHHHHHhCCC-cEEEEee
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGF-NTACITK 78 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk 78 (633)
.|.|||+|..|...|..++..|. +|+++|.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999886 8999997
No 466
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.18 E-value=5.1 Score=41.63 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=28.4
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
|.|||+|.-|..-|..|+++|.+|.++.+.
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 899999999999999999999999999874
No 467
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=71.06 E-value=4.9 Score=43.18 Aligned_cols=32 Identities=25% Similarity=0.160 Sum_probs=29.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|+|.|..|..+|..|...|.+|+++|..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~d 244 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVD 244 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 46999999999999999999999999999875
No 468
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=70.81 E-value=4.5 Score=44.07 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=31.1
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecCC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 81 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~ 81 (633)
-+|+|||+|.+|.-.|-.|++.|.+|.++-+.+.
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 4799999999999999999999999999988643
No 469
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=70.71 E-value=5.3 Score=40.57 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=28.4
Q ss_pred ccEEEECCchHHHHHHHHHHhCCC-cEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGF-NTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~ 79 (633)
..|+|||+|.++-+++..|++.|. +|.|+.|.
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 469999999999999999999997 68888774
No 470
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=70.49 E-value=5.4 Score=40.41 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=28.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCC-CcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHG-FNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G-~~V~vlEk~ 79 (633)
..|+|+|+|.+|.+++..|++.| .+|.|+.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46999999999999999999999 689999874
No 471
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=70.45 E-value=5.7 Score=38.92 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=30.1
Q ss_pred cccEEEECCchHHHHHHHHHHhCCC-cEEEEeecC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLF 80 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~ 80 (633)
+..|+|||.|..|...|..|++.|. +++|+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4579999999999999999999997 788888753
No 472
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=70.42 E-value=5.4 Score=40.61 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=30.2
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
...|+|||.|..|...|..|+..|.+|.++++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence 356999999999999999999999999999885
No 473
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=70.30 E-value=5.7 Score=41.83 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=31.6
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
.+..|+|||.|..|..+|..|+..|. ++.|+|....
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~v 63 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTV 63 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 44679999999999999999999997 8999998644
No 474
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=70.17 E-value=5.5 Score=40.15 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=28.8
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.++|+|+|.+|.+.|..+++.|.+|.++++.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35999999999999999999999999998764
No 475
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=70.04 E-value=4.9 Score=36.85 Aligned_cols=33 Identities=24% Similarity=0.169 Sum_probs=26.5
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeecC
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 80 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~ 80 (633)
-.++|+|-|-.|-.+|.+|+..|++|+|.|..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 359999999999999999999999999999863
No 476
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=69.94 E-value=7.1 Score=37.35 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=30.8
Q ss_pred cccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
+..|+|||.|.-|...|..|+..|. +++|+|....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 4679999999999999999999998 6899987643
No 477
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=69.91 E-value=6.4 Score=37.40 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=28.4
Q ss_pred ccEEEECC-chHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGA-GGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGg-G~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
..++|+|+ |..|..+|..+++.|.+|.++.+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999996 999999999999999999998764
No 478
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=69.48 E-value=5.5 Score=39.37 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=28.8
Q ss_pred ccccEEEECCchHHHHHHHHHHhCC-----------CcEEEEeecC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHG-----------FNTACITKLF 80 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G-----------~~V~vlEk~~ 80 (633)
....|+|||+|.-|+..+..|++.| .+++|+|...
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 4567999999999999999999974 2777777653
No 479
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=69.27 E-value=6 Score=38.90 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=28.8
Q ss_pred EEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
|+|||+|.-|+..+..|+..|. ++.|+|....
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 8999999999999999999997 8889887643
No 480
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=68.83 E-value=6.5 Score=38.59 Aligned_cols=34 Identities=32% Similarity=0.367 Sum_probs=30.0
Q ss_pred cccEEEECCchHHHHHHHHHHhCCC-cEEEEeecC
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLF 80 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~ 80 (633)
+.-|+|||.|..|..+|..|++.|. +++|+|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4569999999999999999999997 888888753
No 481
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=68.78 E-value=5.7 Score=44.57 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.6
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
...-|+|||+|.-|+.+|..|+..|. +++++|.+..
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~V 373 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKV 373 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEE
Confidence 35789999999999999999999997 7889887643
No 482
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.69 E-value=5.3 Score=43.93 Aligned_cols=30 Identities=33% Similarity=0.359 Sum_probs=28.1
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
|+|+|.|.+|+++|..|.+.|++|.+.|+.
T Consensus 18 v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 18 VLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 999999999999999999999999998863
No 483
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=68.67 E-value=7.9 Score=31.29 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=27.4
Q ss_pred ccEEEECCchHHHHHHHHHHhC-CCcEEEEee
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEH-GFNTACITK 78 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~-G~~V~vlEk 78 (633)
..++|+|.|..|..+|..+.+. +.+|.++++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4599999999999999999998 568888877
No 484
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=68.39 E-value=7.7 Score=42.95 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=33.6
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeecCCCCCcc
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT 86 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~~~~~g~t 86 (633)
|||||||++||+||..|+++|++|+|+||....+|.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~ 37 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRA 37 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCce
Confidence 6899999999999999999999999999987766644
No 485
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.34 E-value=7.4 Score=40.09 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=28.7
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|.-|...|..+++.|.+|++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4999999999999999999999999999874
No 486
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=68.32 E-value=8.1 Score=40.04 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=29.0
Q ss_pred ccEEEECCchHHHHHHHHHHhCCC-cEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGF-NTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~ 79 (633)
..|.|||+|..|...|..++..|+ +++|+|..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 469999999999999999999996 89999975
No 487
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=68.20 E-value=3.7 Score=40.40 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=21.1
Q ss_pred cccccCcccCCCCceeeecCCCCCCcccCeeeecccc
Q 046556 395 HYNMGGIPTNHHGEVVTIKGDDPDEVVPGLMAAGEAA 431 (633)
Q Consensus 395 ~~~~GGi~vd~~~~vl~~d~~~~~T~ipGLyAaGe~a 431 (633)
....||+.+|+.++ |+.|.+|||||+.
T Consensus 294 ~~edggikvdd~m~----------tslpdvFa~gDvc 320 (334)
T KOG2755|consen 294 ITEDGGIKVDDAME----------TSLPDVFAAGDVC 320 (334)
T ss_pred hccccCeeehhhcc----------ccccceeeeccee
Confidence 33457777777665 9999999999984
No 488
>PRK06720 hypothetical protein; Provisional
Probab=68.13 E-value=9.3 Score=35.50 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=27.5
Q ss_pred ccEEEECCc-hHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAG-GAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG-~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
..++|.|++ ..|...|..++++|++|+++++.
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~ 49 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDID 49 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECC
Confidence 468888865 59999999999999999999874
No 489
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.07 E-value=5.7 Score=43.64 Aligned_cols=31 Identities=23% Similarity=0.059 Sum_probs=29.1
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|+|.|-+|.+||..|.+.|++|++.|..
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 4999999999999999999999999999964
No 490
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=68.05 E-value=5.8 Score=42.72 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=28.9
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||.|..|+..|..++++|++|+++++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECC
Confidence 3889999999999999999999999999975
No 491
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.01 E-value=5.8 Score=43.45 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=29.1
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|+|+|.|.+|+++|..|.+.|++|.+.|+.
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 46 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKK 46 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCC
Confidence 5999999999999999999999999999975
No 492
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=67.69 E-value=6.7 Score=41.94 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=31.8
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecCC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLFP 81 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~~ 81 (633)
.+..|+|||.|.-|..+|..|+..|. ++.|+|....
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~v 77 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVV 77 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 46789999999999999999999997 7889987644
No 493
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=67.56 E-value=6.8 Score=40.50 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=28.9
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|.-|...|..+++.|.+|.++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 4999999999999999999999999999874
No 494
>PLN02494 adenosylhomocysteinase
Probab=67.49 E-value=6.9 Score=42.39 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=30.1
Q ss_pred cccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 47 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 47 ~~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.-.|+|+|.|..|..+|..|...|.+|+++|..
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~d 286 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEID 286 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 346999999999999999999999999999875
No 495
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=67.26 E-value=6.8 Score=40.30 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=27.9
Q ss_pred cEEEECCchHHHHHHHHHHhCCC--cEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGF--NTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~--~V~vlEk~ 79 (633)
.|.|||+|..|.+.|..|+..|. .++|+++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~ 34 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN 34 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 38999999999999999999984 79999985
No 496
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=67.18 E-value=6.4 Score=42.45 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=29.1
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||.|..|+..|..++++|.+|++++..
T Consensus 5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred EEEEECcchhhHHHHHHHHhCCCEEEEEeCC
Confidence 4999999999999999999999999999974
No 497
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=67.06 E-value=7.2 Score=40.13 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=27.3
Q ss_pred EEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 50 AVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 50 VlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
|.|+|+|.-|+..|+.|++.|..|+++-+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~ 32 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRS 32 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecH
Confidence 899999999999999999999878887764
No 498
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=66.87 E-value=7.8 Score=40.28 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=29.0
Q ss_pred cEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 49 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 49 DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
.|.|||+|.-|...|..|+++|.+|.++++.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4999999999999999999999999999884
No 499
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=66.77 E-value=8.1 Score=36.93 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=30.4
Q ss_pred ccccEEEECCchHHHHHHHHHHhCCC-cEEEEeecC
Q 046556 46 HTYDAVVVGAGGAGLRAAIGLSEHGF-NTACITKLF 80 (633)
Q Consensus 46 ~~~DVlIIGgG~AGl~AA~~aa~~G~-~V~vlEk~~ 80 (633)
.+.-|+|||.|.-|+..|..|+..|. ++.|+|...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 34669999999999999999999998 688888753
No 500
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=66.58 E-value=5.5 Score=43.59 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=29.7
Q ss_pred ccEEEECCchHHHHHHHHHHhCCCcEEEEeec
Q 046556 48 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 79 (633)
Q Consensus 48 ~DVlIIGgG~AGl~AA~~aa~~G~~V~vlEk~ 79 (633)
-.|+|||+|.+|+-.|..+++.+.+|.++.+.
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 46999999999999999999999999999885
Done!