BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046558
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60296|TRAK2_HUMAN Trafficking kinesin-binding protein 2 OS=Homo sapiens GN=TRAK2 PE=1
SV=2
Length = 914
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 1 EDFLAEQNNVQQSQWSPPEEGWLKVNVDDAMDRVNYLAGLGAVVKN----HKGETVAAAV 56
E FL E ++ S+ +PP+ G LK+N+ D + R+ G+ VVKN G A +
Sbjct: 809 ETFLQEMYGLRPSR-NPPDVGQLKMNLVDRLKRL----GIARVVKNPGAQENGRCQEAEI 863
Query: 57 STFKSSGDVELSEAKAVLWGMQ 78
K V L+ ++L G++
Sbjct: 864 GPQKPDSAVYLNSGSSLLGGLR 885
>sp|Q5QWY8|MAO1_IDILO NAD-dependent malic enzyme OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=maeA PE=3 SV=1
Length = 562
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 51 TVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTD 110
TV ++ + G +LSE K V G +A A ++++ ++G+ E ++ + D
Sbjct: 275 TVGTLLAACRQKGK-KLSEQKVVFVGAGSAGCGIAEQIMIQMTAEGLTEEQAKRQIFMVD 333
Query: 111 TFWVIFDIIEAKKIFQNFKAQ 131
F ++ D ++ + FQ AQ
Sbjct: 334 RFGLVMDTMDGLRDFQQALAQ 354
>sp|A0KHR8|MAO1_AERHH NAD-dependent malic enzyme OS=Aeromonas hydrophila subsp.
hydrophila (strain ATCC 7966 / NCIB 9240) GN=maeA PE=3
SV=2
Length = 564
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 51 TVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTD 110
T+ + ++ K+SG +LSE + G +A A ++ + ++G+ + R + D
Sbjct: 278 TLGSLIAACKASG-AKLSEKRVAFLGAGSAGCGIAEQIVAQMKAEGLTDAQARSRVFMVD 336
Query: 111 TFWVIFDIIEAKKIFQNFKAQHVLRM 136
F +I D I + FQ +Q V R+
Sbjct: 337 RFGLITDKIPNQLDFQRRLSQPVERI 362
>sp|P44874|ATOA_HAEIN Acetate CoA-transferase subunit beta OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=atoA PE=3
SV=1
Length = 223
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 67 LSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTDTFWVIFDIIEAKKIFQ 126
++ AK V+ GM+ AK+G++ ++ K + L +K+ + T +F+ IE + + +
Sbjct: 131 VTGAKKVIIGMEHCAKSGSSKIL----KKCTLPLTASKKVAMVVTELAVFNFIEGRLVLK 186
Query: 127 NFKAQHV 133
A HV
Sbjct: 187 E-HAPHV 192
>sp|A4SKE9|MAO1_AERS4 NAD-dependent malic enzyme OS=Aeromonas salmonicida (strain A449)
GN=maeA PE=3 SV=1
Length = 564
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 51 TVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTD 110
T+ + ++ K+SG +LSE + G +A A ++ + ++G+ + R + D
Sbjct: 278 TLGSLIAACKASG-AKLSEKRVAFLGAGSAGCGIAEQIVAQMKAEGLTDAQARGRVFMVD 336
Query: 111 TFWVIFDIIEAKKIFQNFKAQHVLRM 136
F +I D I + FQ +Q V R+
Sbjct: 337 RFGLITDKIPNQLDFQRRLSQPVGRI 362
>sp|Q8R2H7|TRAK2_RAT Trafficking kinesin-binding protein 2 OS=Rattus norvegicus GN=Trak2
PE=1 SV=2
Length = 913
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 EDFLAEQNNVQQSQWSPPEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFK 60
E FL E ++ S+ +PP+ G LK+N+ D + R+ + V G++ A + K
Sbjct: 808 ETFLQEMYGLRPSR-APPDVGQLKMNLVDRLKRLGIARVVKTPVPRENGKSREAEMGLQK 866
Query: 61 SSGDVELSEAKAVLWGMQ 78
V L+ ++L G++
Sbjct: 867 PDSAVYLNSGGSLLGGLR 884
>sp|Q11F82|PANB_MESSB 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Mesorhizobium
sp. (strain BNC1) GN=panB PE=3 SV=1
Length = 281
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 34 VNYLAGLGAVVKNHKGETVAA--AVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILE 91
+ +L G G V H G T A A ++ G E + V+ QA AKAGA SV+LE
Sbjct: 129 IRFLTGRGIPVMAHVGLTPQAVNAFGGYQVQGRGE--DGDRVMRDAQAVAKAGAFSVVLE 186
>sp|A0L3J9|SYA_MAGSM Alanine--tRNA ligase OS=Magnetococcus sp. (strain MC-1) GN=alaS
PE=3 SV=1
Length = 878
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 4 LAEQNNVQQSQWSPPEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSG 63
+ EQ ++ WS E L ++RV LG V E+ +A+V +G
Sbjct: 424 MKEQRERARAAWSGSGEASLGALYHPLLERVGASEFLGYV-----HESASASVVALIKNG 478
Query: 64 DVELSEAKAVLWGMQAAAKAGATSVILESD----SKGVIELINNKRSTLTDTFWVIFDII 119
+E +++ G + + T ES +GVI+L N R T+TDT + D+I
Sbjct: 479 ----AEVESLTAGDEGSVVCNQTPFYGESGGQVGDRGVIQLANGARFTVTDTQKPLPDLI 534
>sp|A7IF97|PANB_XANP2 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=panB PE=3
SV=1
Length = 280
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 34 VNYLAGLGAVVKNHKGETVAA--AVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILE 91
V +L G V H G T A + +FK+ G + +EA +L +A A+AGA S++LE
Sbjct: 129 VRFLVDRGVPVMGHVGLTPQAINTLGSFKARGRDD-AEASIILDDARAIAEAGAFSIVLE 187
Query: 92 S 92
+
Sbjct: 188 A 188
>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2
Length = 768
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 95 KGVIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHVLR 135
KGV L + T+ D V+F ++ K +F+ + QH+ R
Sbjct: 398 KGVKGLTEQEVETILDKAMVLFRFMQEKDVFERYYKQHLAR 438
>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1
Length = 768
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 95 KGVIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHVLR 135
KGV L + T+ D V+F ++ K +F+ + QH+ R
Sbjct: 398 KGVKGLTEQEVETILDKAMVLFRFMQEKDVFERYYKQHLAR 438
>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2
Length = 768
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 95 KGVIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHVLR 135
KGV L + T+ D V+F ++ K +F+ + QH+ R
Sbjct: 398 KGVKGLTEQEVETILDKAMVLFRFMQEKDVFERYYKQHLAR 438
>sp|B2GUY2|TFR2_RAT Transferrin receptor protein 2 OS=Rattus norvegicus GN=Tfr2 PE=2
SV=1
Length = 798
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 18 PEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGET----VAAAVSTFKSSGDVELSEAKAV 73
P+E W K + D+ R+ GL VV NH+ T + A + F + A+
Sbjct: 372 PQE-W-KGRLSDSPYRLGPGPGLRLVVNNHRTSTPISNIFACIEGFAEPDHYVVIGAQRD 429
Query: 74 LWGMQAAAKAGATSVILE 91
WG AA A T+++LE
Sbjct: 430 AWGPGAAKSAVGTAILLE 447
>sp|Q3Z8B4|PANB_DEHE1 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Dehalococcoides
ethenogenes (strain 195) GN=panB PE=3 SV=2
Length = 282
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 32 DRVNYLAGLGAVVKNHKGETVAAA--VSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVI 89
D+V + G V H G T + +S FK G L+ A A+L +A KAGA +++
Sbjct: 122 DKVKRIVDCGIPVMGHIGLTPQSVNQLSGFKVQGKT-LTAALALLEDARALEKAGAFAIV 180
Query: 90 LES 92
LE+
Sbjct: 181 LET 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,360,360
Number of Sequences: 539616
Number of extensions: 1575691
Number of successful extensions: 4152
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 4145
Number of HSP's gapped (non-prelim): 30
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)