Query 046558
Match_columns 136
No_of_seqs 172 out of 1121
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 13:19:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13907 rnhA ribonuclease H; 99.9 1.9E-26 4.1E-31 150.4 12.3 112 22-136 1-112 (128)
2 PRK07708 hypothetical protein; 99.9 1.6E-21 3.5E-26 137.1 13.2 118 19-136 70-193 (219)
3 PRK07238 bifunctional RNase H/ 99.9 1.9E-21 4E-26 146.9 13.1 114 22-136 2-117 (372)
4 cd06222 RnaseH RNase H (RNase 99.8 2.1E-19 4.5E-24 114.9 13.4 111 24-135 1-112 (130)
5 COG0328 RnhA Ribonuclease HI [ 99.8 1.1E-19 2.3E-24 120.5 11.2 110 22-135 3-125 (154)
6 PF13456 RVT_3: Reverse transc 99.8 3.3E-19 7.1E-24 108.2 8.3 72 65-136 1-72 (87)
7 PRK08719 ribonuclease H; Revie 99.7 8.4E-16 1.8E-20 102.3 12.2 110 21-135 3-127 (147)
8 PF00075 RNase_H: RNase H; In 99.7 1.9E-15 4.2E-20 98.4 10.5 105 22-135 3-112 (132)
9 PRK06548 ribonuclease H; Provi 99.7 9.1E-15 2E-19 98.3 13.8 105 22-134 5-121 (161)
10 PRK00203 rnhA ribonuclease H; 99.6 5.4E-15 1.2E-19 98.8 12.3 107 22-134 3-121 (150)
11 KOG3752 Ribonuclease H [Replic 99.1 1.2E-09 2.5E-14 81.2 11.3 118 14-134 203-344 (371)
12 KOG1812 Predicted E3 ubiquitin 96.9 0.0014 2.9E-08 50.3 4.0 94 35-128 16-114 (384)
13 COG0295 Cdd Cytidine deaminase 92.5 0.94 2E-05 29.7 6.6 57 37-94 25-81 (134)
14 COG0590 CumB Cytosine/adenosin 88.0 1.9 4.1E-05 28.8 5.3 57 36-92 26-83 (152)
15 cd01285 nucleoside_deaminase N 87.8 2.6 5.7E-05 26.3 5.6 58 36-93 15-73 (109)
16 cd01284 Riboflavin_deaminase-r 87.7 2.5 5.5E-05 26.8 5.5 41 36-79 17-57 (115)
17 TIGR01354 cyt_deam_tetra cytid 86.7 1.7 3.8E-05 28.1 4.4 57 37-94 20-76 (127)
18 cd00786 cytidine_deaminase-lik 86.4 5 0.00011 24.4 6.1 43 36-78 16-60 (96)
19 COG3981 Predicted acetyltransf 83.7 6 0.00013 27.1 5.9 27 70-96 116-142 (174)
20 cd01283 cytidine_deaminase Cyt 81.7 4.7 0.0001 25.2 4.7 43 36-78 16-58 (112)
21 TIGR02571 ComEB ComE operon pr 81.6 8.9 0.00019 25.6 6.2 39 37-76 24-78 (151)
22 PF00383 dCMP_cyt_deam_1: Cyti 75.9 6.1 0.00013 23.9 3.9 45 35-79 21-66 (102)
23 PHA02588 cd deoxycytidylate de 74.6 21 0.00045 24.3 6.5 12 65-76 81-92 (168)
24 PF05830 NodZ: Nodulation prot 73.7 7.1 0.00015 29.3 4.2 66 35-104 165-233 (321)
25 PRK05578 cytidine deaminase; V 72.6 12 0.00026 24.3 4.8 56 38-94 24-79 (131)
26 PRK10860 tRNA-specific adenosi 72.4 12 0.00027 25.5 5.0 41 37-78 32-73 (172)
27 PRK12411 cytidine deaminase; P 72.2 12 0.00026 24.4 4.7 57 37-94 23-79 (132)
28 PRK06848 hypothetical protein; 67.6 18 0.00038 23.9 4.7 56 37-93 26-81 (139)
29 cd01286 deoxycytidylate_deamin 66.9 22 0.00049 22.9 5.1 41 37-78 19-81 (131)
30 KOG3139 N-acetyltransferase [G 56.7 16 0.00035 24.8 3.1 22 73-94 106-127 (165)
31 PRK15000 peroxidase; Provision 56.1 37 0.0008 23.6 5.0 44 39-84 125-168 (200)
32 COG4718 Phage-related protein 55.6 2 4.3E-05 27.0 -1.3 20 1-20 61-80 (111)
33 COG0084 TatD Mg-dependent DNas 55.0 6.2 0.00013 28.8 1.0 45 77-121 189-234 (256)
34 PRK08298 cytidine deaminase; V 53.6 49 0.0011 21.7 4.9 55 39-94 24-78 (136)
35 PRK14828 undecaprenyl pyrophos 53.2 70 0.0015 23.4 6.1 54 38-94 28-81 (256)
36 TIGR00326 eubact_ribD riboflav 53.1 20 0.00044 27.1 3.5 36 39-78 20-55 (344)
37 PF03259 Robl_LC7: Roadblock/L 52.3 45 0.00097 19.3 4.8 57 38-95 14-74 (91)
38 PRK13191 putative peroxiredoxi 51.9 42 0.00091 23.6 4.8 42 41-84 126-167 (215)
39 PF05380 Peptidase_A17: Pao re 51.3 70 0.0015 21.2 8.1 71 8-82 64-143 (159)
40 PRK10382 alkyl hydroperoxide r 49.7 51 0.0011 22.7 4.8 41 41-83 121-161 (187)
41 COG0450 AhpC Peroxiredoxin [Po 49.2 89 0.0019 21.9 5.8 48 35-84 120-167 (194)
42 PRK13190 putative peroxiredoxi 46.0 63 0.0014 22.4 4.9 43 40-84 118-160 (202)
43 PF05854 MC1: Non-histone chro 44.8 12 0.00027 22.7 1.0 20 42-61 6-25 (93)
44 PF05939 Phage_min_tail: Phage 43.9 10 0.00023 23.8 0.6 32 1-32 59-90 (109)
45 PF11080 DUF2622: Protein of u 42.4 82 0.0018 19.5 4.8 43 36-78 31-73 (96)
46 PRK11449 putative deoxyribonuc 42.2 14 0.00031 26.8 1.2 20 78-97 192-211 (258)
47 cd03016 PRX_1cys Peroxiredoxin 42.2 87 0.0019 21.7 5.1 42 41-84 119-160 (203)
48 PTZ00137 2-Cys peroxiredoxin; 42.1 63 0.0014 23.7 4.5 42 41-84 190-231 (261)
49 KOG1018 Cytosine deaminase FCY 40.9 1E+02 0.0022 21.1 5.1 47 37-83 31-78 (169)
50 COG1212 KdsB CMP-2-keto-3-deox 40.7 61 0.0013 23.5 4.1 32 73-104 31-62 (247)
51 PRK12295 hisZ ATP phosphoribos 39.5 1.8E+02 0.0038 22.5 7.0 41 64-104 114-154 (373)
52 cd06908 M14_AGBL4_like Peptida 37.9 59 0.0013 23.8 3.8 58 24-93 91-149 (261)
53 PRK13189 peroxiredoxin; Provis 37.6 1E+02 0.0022 21.8 5.0 42 41-84 128-169 (222)
54 TIGR03757 conj_TIGR03757 integ 37.5 42 0.00091 21.4 2.6 64 23-88 4-85 (113)
55 cd03015 PRX_Typ2cys Peroxiredo 36.4 1.1E+02 0.0025 20.3 4.9 43 41-85 122-164 (173)
56 KOG4609 Predicted phosphoglyce 35.2 71 0.0015 23.1 3.7 38 16-61 238-275 (284)
57 PRK10786 ribD bifunctional dia 34.8 68 0.0015 24.6 3.9 36 39-78 26-61 (367)
58 KOG0833 Cytidine deaminase [Nu 34.4 1.1E+02 0.0023 21.1 4.3 40 38-77 42-81 (173)
59 PF00411 Ribosomal_S11: Riboso 34.4 1.2E+02 0.0026 19.0 4.5 51 42-93 14-69 (110)
60 PRK14835 undecaprenyl pyrophos 34.3 1.9E+02 0.0042 21.4 6.4 52 39-94 44-95 (275)
61 PRK13599 putative peroxiredoxi 33.9 1.2E+02 0.0027 21.3 4.8 42 41-84 121-162 (215)
62 PLN02807 diaminohydroxyphospho 32.9 76 0.0017 24.6 3.9 35 40-78 56-90 (380)
63 PF14437 MafB19-deam: MafB19-l 32.7 1.5E+02 0.0033 19.8 5.7 83 14-102 23-115 (146)
64 PLN02182 cytidine deaminase 32.6 98 0.0021 23.7 4.3 40 38-77 66-107 (339)
65 TIGR00443 hisZ_biosyn_reg ATP 31.0 2.2E+02 0.0048 21.1 7.8 41 64-104 121-161 (314)
66 COG3341 Predicted double-stran 30.8 1.6E+02 0.0036 21.1 4.9 83 21-105 64-153 (225)
67 PRK09027 cytidine deaminase; P 30.6 1.2E+02 0.0026 22.8 4.4 52 38-90 71-124 (295)
68 PF04775 Bile_Hydr_Trans: Acyl 30.4 21 0.00046 22.9 0.5 43 38-82 33-75 (126)
69 PLN02402 cytidine deaminase 30.1 1.2E+02 0.0026 22.9 4.4 52 38-90 46-99 (303)
70 TIGR03137 AhpC peroxiredoxin. 28.8 1.8E+02 0.0038 19.8 4.9 41 41-83 121-161 (187)
71 CHL00041 rps11 ribosomal prote 28.6 1.6E+02 0.0035 18.7 7.0 50 42-92 27-81 (116)
72 CHL00139 rpl18 ribosomal prote 28.5 1.6E+02 0.0034 18.6 6.6 53 37-90 25-84 (109)
73 PF10298 WhiA_N: WhiA N-termin 27.9 89 0.0019 18.4 2.9 34 66-102 4-41 (86)
74 PLN02706 glucosamine 6-phospha 27.5 1.1E+02 0.0024 19.4 3.6 26 71-96 105-130 (150)
75 PTZ00253 tryparedoxin peroxida 27.2 2E+02 0.0044 19.7 5.0 42 41-84 129-170 (199)
76 COG0117 RibD Pyrimidine deamin 27.0 1.1E+02 0.0023 20.5 3.3 34 39-76 29-62 (146)
77 PRK08997 isocitrate dehydrogen 27.0 2.8E+02 0.0061 21.2 5.9 52 72-133 152-203 (334)
78 PF06754 PhnG: Phosphonate met 26.8 2E+02 0.0043 19.1 5.4 68 8-79 28-100 (146)
79 PLN00118 isocitrate dehydrogen 26.6 2.7E+02 0.0058 21.7 5.8 59 64-133 182-240 (372)
80 PF03308 ArgK: ArgK protein; 26.0 1.3E+02 0.0027 22.3 3.8 28 65-92 102-129 (266)
81 TIGR00175 mito_nad_idh isocitr 25.3 2.7E+02 0.0058 21.3 5.6 51 73-133 151-201 (333)
82 PRK05309 30S ribosomal protein 25.2 2E+02 0.0043 18.6 7.0 50 42-92 31-85 (128)
83 PRK10425 DNase TatD; Provision 24.9 40 0.00086 24.5 1.1 20 79-98 189-208 (258)
84 PRK09027 cytidine deaminase; P 24.8 3.1E+02 0.0066 20.6 6.6 83 38-134 210-293 (295)
85 KOG1602 Cis-prenyltransferase 24.6 2E+02 0.0043 21.3 4.5 52 39-94 39-90 (271)
86 PF12458 DUF3686: ATPase invol 24.6 68 0.0015 25.4 2.3 34 92-125 414-447 (448)
87 PRK12292 hisZ ATP phosphoribos 24.4 3.3E+02 0.0072 21.0 7.6 41 64-104 132-172 (391)
88 PF08248 Tryp_FSAP: Tryptophyl 24.0 52 0.0011 12.0 0.8 7 12-18 2-8 (12)
89 COG1083 NeuA CMP-N-acetylneura 23.1 1.4E+02 0.003 21.5 3.5 31 73-103 31-62 (228)
90 PF07888 CALCOCO1: Calcium bin 23.1 1.6E+02 0.0034 24.2 4.1 49 14-63 57-112 (546)
91 TIGR01355 cyt_deam_dimer cytid 22.8 2E+02 0.0044 21.4 4.4 52 38-90 43-96 (283)
92 cd00225 API3 Ascaris pepsin in 22.7 2E+02 0.0044 19.3 4.0 38 8-46 85-122 (159)
93 PF06180 CbiK: Cobalt chelatas 22.0 2.3E+02 0.005 20.8 4.6 52 69-130 56-107 (262)
94 PF02348 CTP_transf_3: Cytidyl 21.9 2.2E+02 0.0049 19.3 4.5 31 73-103 27-58 (217)
95 PRK03437 3-isopropylmalate deh 21.7 3.2E+02 0.007 21.0 5.4 51 73-133 166-216 (344)
96 PF08675 RNA_bind: RNA binding 21.7 1.2E+02 0.0026 18.4 2.5 21 114-134 21-41 (87)
97 KOG3287 Membrane trafficking p 21.6 1.7E+02 0.0036 21.1 3.6 47 14-61 48-94 (236)
98 PRK10812 putative DNAse; Provi 21.2 53 0.0012 23.9 1.2 20 78-97 190-209 (265)
99 COG1703 ArgK Putative periplas 21.1 1.6E+02 0.0034 22.4 3.6 23 70-92 129-151 (323)
100 smart00340 HALZ homeobox assoc 20.9 31 0.00068 17.8 -0.1 32 91-122 4-35 (44)
101 PF01026 TatD_DNase: TatD rela 20.9 79 0.0017 22.6 2.0 22 76-97 188-209 (255)
102 PF00180 Iso_dh: Isocitrate/is 20.8 3.9E+02 0.0084 20.4 5.8 51 72-133 165-216 (348)
103 PRK10057 rpsV 30S ribosomal su 20.8 22 0.00047 18.2 -0.7 18 85-102 20-37 (44)
104 PHA03368 DNA packaging termina 20.6 5.1E+02 0.011 22.3 6.6 78 18-95 503-589 (738)
105 TIGR00857 pyrC_multi dihydroor 20.6 3E+02 0.0066 21.2 5.3 40 63-102 191-230 (411)
106 PF14524 Wzt_C: Wzt C-terminal 20.3 2.2E+02 0.0047 17.7 3.9 37 20-56 34-70 (142)
107 PF03481 SUA5: Putative GTP-bi 20.3 2.2E+02 0.0048 18.0 3.8 28 65-92 79-106 (125)
108 TIGR00055 uppS undecaprenyl di 20.2 2.1E+02 0.0046 20.5 4.0 48 44-94 6-53 (226)
No 1
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.94 E-value=1.9e-26 Score=150.37 Aligned_cols=112 Identities=14% Similarity=0.108 Sum_probs=100.8
Q ss_pred cEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHH
Q 046558 22 WLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELI 101 (136)
Q Consensus 22 ~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i 101 (136)
++++|||||+..+++.+|+|+|||+..|.+...+ .. ...|+++||++|+++||++|.+.|+++|+|+|||+.|++++
T Consensus 1 ~~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~--~~-~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~ 77 (128)
T PRK13907 1 MIEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSL--PL-GTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAV 77 (128)
T ss_pred CEEEEEeeCCCCCCCccEEEEEEEECCeeEEEEe--cc-cccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHH
Confidence 4789999999999999999999999988765443 22 34799999999999999999999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHhhcCCceEEEEEeCC
Q 046558 102 NNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHVLRM 136 (136)
Q Consensus 102 ~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v~Re 136 (136)
++.+.....+..++++++.++..|..+.+.||||+
T Consensus 78 ~~~~~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r~ 112 (128)
T PRK13907 78 EKEYAKNKMFAPLLEEALQYIKSFDLFFIKWIPSS 112 (128)
T ss_pred hHHHhcChhHHHHHHHHHHHHhcCCceEEEEcCch
Confidence 99776556789999999999999999999999995
No 2
>PRK07708 hypothetical protein; Validated
Probab=99.88 E-value=1.6e-21 Score=137.12 Aligned_cols=118 Identities=20% Similarity=0.206 Sum_probs=100.1
Q ss_pred CCCcEEEEeceeEecCCCeeeEeEEEecCCCcEE--EeecccccccCCHHHHHHHHHHHHHHHHHHcCCCe--EEEeech
Q 046558 19 EEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETV--AAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATS--VILESDS 94 (136)
Q Consensus 19 ~~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~--~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~--v~iesDs 94 (136)
.+..+++|||||+..+++.+|+|+||+++.|... ......+....|+++||+.|++.||+.|.++|+++ |.|++||
T Consensus 70 ep~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DS 149 (219)
T PRK07708 70 EPHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVTFRGDS 149 (219)
T ss_pred CCCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEEEEecc
Confidence 3457999999999999999999999999887543 23344566668999999999999999999999976 8999999
Q ss_pred HHHHHHHhcCCCCC-CchHHHHHHHHHHhhcCC-ceEEEEEeCC
Q 046558 95 KGVIELINNKRSTL-TDTFWVIFDIIEAKKIFQ-NFKAQHVLRM 136 (136)
Q Consensus 95 ~~vv~~i~~~~~~~-~~~~~~i~~i~~l~~~~~-~~~~~~v~Re 136 (136)
+.|++++++.+... ..+..++++++.+++.|. .+.+.||+|+
T Consensus 150 qlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~VpR~ 193 (219)
T PRK07708 150 QVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPISRK 193 (219)
T ss_pred HHHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECCch
Confidence 99999999987653 356778899999988876 4889999995
No 3
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.87 E-value=1.9e-21 Score=146.87 Aligned_cols=114 Identities=24% Similarity=0.227 Sum_probs=101.4
Q ss_pred cEEEEeceeEecCCCeeeEeEEEecCCCc-EEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHH
Q 046558 22 WLKVNVDDAMDRVNYLAGLGAVVKNHKGE-TVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIEL 100 (136)
Q Consensus 22 ~~k~n~Dgs~~~~~~~~g~G~vird~~G~-~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~ 100 (136)
.+.+|+|||+.++++.+|+|++|+++.|. ++...+..++ ..|++.||+.|++.||+++.+.|.++|.|++||+.|++.
T Consensus 2 ~~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~ 80 (372)
T PRK07238 2 KVVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQ 80 (372)
T ss_pred eEEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH
Confidence 47899999999999999999999999764 5555555565 468899999999999999999999999999999999999
Q ss_pred HhcCCCC-CCchHHHHHHHHHHhhcCCceEEEEEeCC
Q 046558 101 INNKRST-LTDTFWVIFDIIEAKKIFQNFKAQHVLRM 136 (136)
Q Consensus 101 i~~~~~~-~~~~~~~i~~i~~l~~~~~~~~~~~v~Re 136 (136)
+++.+.. ...+..++.+++.+++.|..+.+.||+|+
T Consensus 81 i~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r~ 117 (372)
T PRK07238 81 MSGRWKVKHPDMKPLAAQARELASQFGRVTYTWIPRA 117 (372)
T ss_pred hCCCCccCChHHHHHHHHHHHHHhcCCceEEEECCch
Confidence 9998754 45788899999999999999999999995
No 4
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.84 E-value=2.1e-19 Score=114.89 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=99.5
Q ss_pred EEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHHhc
Q 046558 24 KVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINN 103 (136)
Q Consensus 24 k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~ 103 (136)
+||+|||+..+.+.+|+|+++++..+.......... ...+++++|+.|++.||+.+...+.+++.|++||+.+++.+++
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~-~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~ 79 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLG-GNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTG 79 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccC-CCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhc
Confidence 589999999888899999999999998877766544 4579999999999999999999999999999999999999998
Q ss_pred CCC-CCCchHHHHHHHHHHhhcCCceEEEEEeC
Q 046558 104 KRS-TLTDTFWVIFDIIEAKKIFQNFKAQHVLR 135 (136)
Q Consensus 104 ~~~-~~~~~~~~i~~i~~l~~~~~~~~~~~v~R 135 (136)
... .......++.+++.++..+..+.|.||+|
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~ 112 (130)
T cd06222 80 WYEGKPVKNVDLWQRLLALLKRFHKVRFEWVPG 112 (130)
T ss_pred cccCCChhhHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 765 34578889999999998899999999998
No 5
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.1e-19 Score=120.55 Aligned_cols=110 Identities=22% Similarity=0.114 Sum_probs=92.8
Q ss_pred cEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHH
Q 046558 22 WLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELI 101 (136)
Q Consensus 22 ~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i 101 (136)
.+.+|+|||+.++++.+|+|+|++...+..-. +.... ..|++.+|++|+++||+.+.+.+...|.++|||++|++.|
T Consensus 3 ~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~--s~~~~-~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i 79 (154)
T COG0328 3 KVEIFTDGACLGNPGPGGWGAVLRYGDGEKEL--SGGEG-RTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGI 79 (154)
T ss_pred ceEEEecCccCCCCCCceEEEEEEcCCceEEE--eeeee-cccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHH
Confidence 57899999999999999999999977776622 22233 4899999999999999999999999999999999999999
Q ss_pred hcCC----CC---------CCchHHHHHHHHHHhhcCCceEEEEEeC
Q 046558 102 NNKR----ST---------LTDTFWVIFDIIEAKKIFQNFKAQHVLR 135 (136)
Q Consensus 102 ~~~~----~~---------~~~~~~~i~~i~~l~~~~~~~~~~~v~R 135 (136)
+ .+ .. +-+...+++++..+++.|..+.+.||+.
T Consensus 80 ~-~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkg 125 (154)
T COG0328 80 T-RWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKG 125 (154)
T ss_pred H-HHHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeC
Confidence 8 33 11 2234578999999999999999999983
No 6
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=99.80 E-value=3.3e-19 Score=108.24 Aligned_cols=72 Identities=32% Similarity=0.312 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHHhcCCCCCCchHHHHHHHHHHhhcCCceEEEEEeCC
Q 046558 65 VELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHVLRM 136 (136)
Q Consensus 65 ~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v~Re 136 (136)
|++||++|++.||++|.++|+++|++||||+.+++++++....++++..++.+|+.+++.|+++.|.||+||
T Consensus 1 ~~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~r~ 72 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIPRE 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE--GG
T ss_pred CcHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEChH
Confidence 579999999999999999999999999999999999999877767999999999999999999999999996
No 7
>PRK08719 ribonuclease H; Reviewed
Probab=99.69 E-value=8.4e-16 Score=102.25 Aligned_cols=110 Identities=18% Similarity=0.130 Sum_probs=86.0
Q ss_pred CcEEEEeceeEecCCC---eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHH
Q 046558 21 GWLKVNVDDAMDRVNY---LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGV 97 (136)
Q Consensus 21 ~~~k~n~Dgs~~~~~~---~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~v 97 (136)
..+++|+|||+..+++ .+|+|+++.+..|..+...+..+....|++.||++|++.||+.+.+. ..|.|||+++
T Consensus 3 ~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~----~~i~tDS~yv 78 (147)
T PRK08719 3 ASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG----DVIYSDSDYC 78 (147)
T ss_pred ceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC----CEEEechHHH
Confidence 3578999999987765 68999999998887654444445555799999999999999998764 3799999999
Q ss_pred HHHHh--------cCCCC----CCchHHHHHHHHHHhhcCCceEEEEEeC
Q 046558 98 IELIN--------NKRST----LTDTFWVIFDIIEAKKIFQNFKAQHVLR 135 (136)
Q Consensus 98 v~~i~--------~~~~~----~~~~~~~i~~i~~l~~~~~~~~~~~v~R 135 (136)
++.++ +.+.. +-....+++.|..+.+ ..+++|.||++
T Consensus 79 i~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~-~~~i~~~~Vkg 127 (147)
T PRK08719 79 VRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRA-RKYVEVEKVTA 127 (147)
T ss_pred HHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhC-CCcEEEEEecC
Confidence 99994 33321 2235678888877776 57899999986
No 8
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.66 E-value=1.9e-15 Score=98.38 Aligned_cols=105 Identities=15% Similarity=0.067 Sum_probs=80.6
Q ss_pred cEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHH
Q 046558 22 WLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELI 101 (136)
Q Consensus 22 ~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i 101 (136)
-+.+|+|||+..+++.+|+|+++.+. . .....++ ..|++.+|++|+.+||+ +.. . ++|.|+|||+.+++.+
T Consensus 3 ~~~iytDgS~~~~~~~~~~g~v~~~~--~---~~~~~~~-~~s~~~aEl~Ai~~AL~-~~~-~-~~v~I~tDS~~v~~~l 73 (132)
T PF00075_consen 3 AIIIYTDGSCRPNPGKGGAGYVVWGG--R---NFSFRLG-GQSNNRAELQAIIEALK-ALE-H-RKVTIYTDSQYVLNAL 73 (132)
T ss_dssp SEEEEEEEEECTTTTEEEEEEEEETT--E---EEEEEEE-SECHHHHHHHHHHHHHH-THS-T-SEEEEEES-HHHHHHH
T ss_pred cEEEEEeCCccCCCCceEEEEEEECC--e---EEEeccc-ccchhhhheehHHHHHH-Hhh-c-ccccccccHHHHHHHH
Confidence 47899999999999999999977433 2 2233344 57999999999999999 552 2 9999999999999988
Q ss_pred hc-----CCCCCCchHHHHHHHHHHhhcCCceEEEEEeC
Q 046558 102 NN-----KRSTLTDTFWVIFDIIEAKKIFQNFKAQHVLR 135 (136)
Q Consensus 102 ~~-----~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v~R 135 (136)
+. ..........++.++..++.....+.|.|||.
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~v~~~~V~~ 112 (132)
T PF00075_consen 74 NKWLHGNGWKKTSNGRPIKNEIWELLSRGIKVRFRWVPG 112 (132)
T ss_dssp HTHHHHTTSBSCTSSSBHTHHHHHHHHHSSEEEEEESSS
T ss_pred HHhccccccccccccccchhheeeccccceEEeeeeccC
Confidence 87 44332222246678888888888999999986
No 9
>PRK06548 ribonuclease H; Provisional
Probab=99.65 E-value=9.1e-15 Score=98.34 Aligned_cols=105 Identities=17% Similarity=0.051 Sum_probs=81.8
Q ss_pred cEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHH
Q 046558 22 WLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELI 101 (136)
Q Consensus 22 ~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i 101 (136)
.+.+||||++.++++.+|+|+++.+. + .. .... ...|++.||++|+++||+.+. .+..+|.|.|||+++++.+
T Consensus 5 ~~~IytDGa~~gnpg~~G~g~~~~~~-~-~~---~g~~-~~~TNnraEl~Aii~aL~~~~-~~~~~v~I~TDS~yvi~~i 77 (161)
T PRK06548 5 EIIAATDGSSLANPGPSGWAWYVDEN-T-WD---SGGW-DIATNNIAELTAVRELLIATR-HTDRPILILSDSKYVINSL 77 (161)
T ss_pred EEEEEEeeccCCCCCceEEEEEEeCC-c-EE---ccCC-CCCCHHHHHHHHHHHHHHhhh-cCCceEEEEeChHHHHHHH
Confidence 48999999999999999999998752 2 22 1222 347999999999999998554 4556899999999999999
Q ss_pred hc--------CCC----CCCchHHHHHHHHHHhhcCCceEEEEEe
Q 046558 102 NN--------KRS----TLTDTFWVIFDIIEAKKIFQNFKAQHVL 134 (136)
Q Consensus 102 ~~--------~~~----~~~~~~~~i~~i~~l~~~~~~~~~~~v~ 134 (136)
+. .+. .+-....++++|..++.. ..++|.||+
T Consensus 78 ~~W~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~-~~v~~~wVk 121 (161)
T PRK06548 78 TKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMEN-RNIRMSWVN 121 (161)
T ss_pred HHHHHHHHHCCCcccCCCccccHHHHHHHHHHHhc-CceEEEEEe
Confidence 94 222 122467899999998876 479999996
No 10
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.65 E-value=5.4e-15 Score=98.78 Aligned_cols=107 Identities=19% Similarity=0.058 Sum_probs=82.4
Q ss_pred cEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHH
Q 046558 22 WLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELI 101 (136)
Q Consensus 22 ~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i 101 (136)
.+.+|||||+..+++.+|+|+++....+.... ..... ..|++.||++|++.||+.+.+ ...|.|.|||+.+++.|
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~--~~~~~-~~TN~~aEL~Ai~~AL~~~~~--~~~v~I~tDS~yvi~~i 77 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKEL--SGGEA-LTTNNRMELMAAIEALEALKE--PCEVTLYTDSQYVRQGI 77 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEE--ecCCC-CCcHHHHHHHHHHHHHHHcCC--CCeEEEEECHHHHHHHH
Confidence 48899999999999999999999865543322 22233 478999999999999998865 35899999999999988
Q ss_pred hc--------CCCC----CCchHHHHHHHHHHhhcCCceEEEEEe
Q 046558 102 NN--------KRST----LTDTFWVIFDIIEAKKIFQNFKAQHVL 134 (136)
Q Consensus 102 ~~--------~~~~----~~~~~~~i~~i~~l~~~~~~~~~~~v~ 134 (136)
+. .+.. +-....++++|..++.. ..+.|.|||
T Consensus 78 ~~w~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~~-~~v~~~wV~ 121 (150)
T PRK00203 78 TEWIHGWKKNGWKTADKKPVKNVDLWQRLDAALKR-HQIKWHWVK 121 (150)
T ss_pred HHHHHHHHHcCCcccCCCccccHHHHHHHHHHhcc-CceEEEEec
Confidence 85 1211 22346788888888765 689999997
No 11
>KOG3752 consensus Ribonuclease H [Replication, recombination and repair]
Probab=99.13 E-value=1.2e-09 Score=81.21 Aligned_cols=118 Identities=14% Similarity=0.062 Sum_probs=84.2
Q ss_pred CCcCC-CCCcEEEEeceeEecCC---CeeeEeEEEecCCCcEEEeeccccc-ccCCHHHHHHHHHHHHHHHHHHcCCCeE
Q 046558 14 QWSPP-EEGWLKVNVDDAMDRVN---YLAGLGAVVKNHKGETVAAAVSTFK-SSGDVELSEAKAVLWGMQAAAKAGATSV 88 (136)
Q Consensus 14 ~W~~P-~~~~~k~n~Dgs~~~~~---~~~g~G~vird~~G~~~~~~~~~~~-~~~s~~~aE~~Al~~aL~~a~~~g~~~v 88 (136)
.|..+ +.+...+++|||+..+. ..+|+|+.+= .|.-.-.+ .++. +..|++.||+.|+.+||+.|++.+..+|
T Consensus 203 ~~~d~e~~~~~vvytDGS~~~ng~~~~~AGyGvywg--~~~e~N~s-~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv 279 (371)
T KOG3752|consen 203 LENDREEIEIQVVYTDGSSSGNGRKSSRAGYGVYWG--PGHELNVS-GPLAGGRQTNNRAELIAAIEALKKARSKNINKV 279 (371)
T ss_pred cccccccccceEEEecCccccCCCCCCcceeEEeeC--CCCccccc-ccCCCCcccccHHHHHHHHHHHHHHHhcCCCcE
Confidence 34443 35568899999999854 3467777663 34333333 3444 7789999999999999999999999999
Q ss_pred EEeechHHHHHHHhc--------CCC--CC-------CchHHHHHHHHHHhhc--CCceEEEEEe
Q 046558 89 ILESDSKGVIELINN--------KRS--TL-------TDTFWVIFDIIEAKKI--FQNFKAQHVL 134 (136)
Q Consensus 89 ~iesDs~~vv~~i~~--------~~~--~~-------~~~~~~i~~i~~l~~~--~~~~~~~~v~ 134 (136)
.|.|||..++++|+. .+. .. -.....+.++-.|.+. -.++++.||+
T Consensus 280 ~I~TDS~~~i~~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~ 344 (371)
T KOG3752|consen 280 VIRTDSEYFINSLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVG 344 (371)
T ss_pred EEEechHHHHHHHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhhccCceEEEEec
Confidence 999999999999874 110 01 1234566667777665 3778888875
No 12
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0014 Score=50.28 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=66.8
Q ss_pred CCeeeEeEEEecC-CCcEEEeecccccc--cCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHHhcCCCCCC--
Q 046558 35 NYLAGLGAVVKNH-KGETVAAAVSTFKS--SGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLT-- 109 (136)
Q Consensus 35 ~~~~g~G~vird~-~G~~~~~~~~~~~~--~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~~~~~~-- 109 (136)
...+|.|+.+.|. +............. ..++..||++|+..+|..+..+|+.++.+.+|...+...+.++.....
T Consensus 16 ~~~~g~~vai~d~~d~~~~f~~k~~~~~~~~~~~~~ae~~al~~~l~ea~~~~~~~~~~~~d~~~~~~~v~~~~~~~~~~ 95 (384)
T KOG1812|consen 16 ILLAGFGVAICDEHDDDLLFQMKASDHDSDSITPLEAELMALKRGLTEALELGLNHIVIYCDDELIYESVAGREKPEQHR 95 (384)
T ss_pred hhcccCceeeeccccHHHHHHhhcCcccccccchhhHHHHHHhhccHHHHhhccccceEecccHHHHHHHhhhhhHHHHH
Confidence 3568899999886 44433333333321 267999999999999999999999999999998888887777655422
Q ss_pred chHHHHHHHHHHhhcCCce
Q 046558 110 DTFWVIFDIIEAKKIFQNF 128 (136)
Q Consensus 110 ~~~~~i~~i~~l~~~~~~~ 128 (136)
....++.+.+.+...+...
T Consensus 96 ~~~~l~~~v~~~r~~l~~~ 114 (384)
T KOG1812|consen 96 KIVLLVELVQRIREQLTSS 114 (384)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4556666665555544433
No 13
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=92.54 E-value=0.94 Score=29.70 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=44.8
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
+--+|.+++..+|++..+..-.........-||-.|+..++.. -...+..|.+.+|.
T Consensus 25 ~F~VGAa~~t~~G~i~tG~NiEnasy~~t~CAErsAI~~ais~-G~~~~~~v~v~~~~ 81 (134)
T COG0295 25 KFKVGAALRTKDGRIYTGANVENASYGLTVCAERSAIFKAISE-GKRKFDAVVVVADT 81 (134)
T ss_pred CCcEEEEEEeCCCCEEEEEeeecccccchhhHHHHHHHHHHHc-CCCcEEEEEEEcCC
Confidence 3457889999999888877655556677889999999988876 55567888898885
No 14
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=88.02 E-value=1.9 Score=28.83 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=38.8
Q ss_pred CeeeEeEEEecCCCcEEEeeccccccc-CCHHHHHHHHHHHHHHHHHHcCCCeEEEee
Q 046558 36 YLAGLGAVVKNHKGETVAAAVSTFKSS-GDVELSEAKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 36 ~~~g~G~vird~~G~~~~~~~~~~~~~-~s~~~aE~~Al~~aL~~a~~~g~~~v~ies 92 (136)
+...+|.||-+.+|.++..+....... .-..+||..|+..|-+......+....+++
T Consensus 26 ge~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tlyv 83 (152)
T COG0590 26 GEVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLYV 83 (152)
T ss_pred CCCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcEEEE
Confidence 456789999888898888665544332 234599999999999888654444444433
No 15
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=87.84 E-value=2.6 Score=26.27 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=37.3
Q ss_pred CeeeEeEEEecCCCcEEEeeccccc-ccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 36 YLAGLGAVVKNHKGETVAAAVSTFK-SSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 36 ~~~g~G~vird~~G~~~~~~~~~~~-~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
+...+|.+|.+.+|+++..+..... ......+||..|+..+.+.-....+....+++.
T Consensus 15 ~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t 73 (109)
T cd01285 15 GEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTT 73 (109)
T ss_pred CCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEe
Confidence 4556788888888988776554432 234678999999988776533222444445443
No 16
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=87.68 E-value=2.5 Score=26.84 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=30.8
Q ss_pred CeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHH
Q 046558 36 YLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQA 79 (136)
Q Consensus 36 ~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~ 79 (136)
+...+|.||-+.+|+++..+..... ...+||..|+..+.+.
T Consensus 17 ~~~pvGaviv~~~g~iv~~g~n~~~---~~~HAE~~ai~~a~~~ 57 (115)
T cd01284 17 PNPPVGCVIVDDDGEIVGEGYHRKA---GGPHAEVNALASAGEK 57 (115)
T ss_pred CCCCEEEEEEeCCCeEEEEecCCCC---CcccHHHHHHHHHhhc
Confidence 3456888888877998886655443 5689999999988764
No 17
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=86.67 E-value=1.7 Score=28.05 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=39.3
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
...+|.++++.+|++..+.........-...||..|+..+...- +..+..|.+..+.
T Consensus 20 ~~~vgAa~~~~~G~i~~G~n~e~~~~~~s~~AE~~Ai~~a~~~g-~~~i~~i~vv~~~ 76 (127)
T TIGR01354 20 NFKVGAALLTKDGRIFTGVNVENASYPLTICAERSAIGKAISAG-YRKFVAIAVADSA 76 (127)
T ss_pred CCeEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcC-CCCeEEEEEEeCC
Confidence 34578888888999888655444344556789999988877542 2356777776654
No 18
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=86.39 E-value=5 Score=24.39 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=27.6
Q ss_pred CeeeEeEEEecC-CCcEEEeeccc-ccccCCHHHHHHHHHHHHHH
Q 046558 36 YLAGLGAVVKNH-KGETVAAAVST-FKSSGDVELSEAKAVLWGMQ 78 (136)
Q Consensus 36 ~~~g~G~vird~-~G~~~~~~~~~-~~~~~s~~~aE~~Al~~aL~ 78 (136)
+...+|.++.+. +|.++..+... ........+||..|+..+.+
T Consensus 16 ~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~ 60 (96)
T cd00786 16 SNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGS 60 (96)
T ss_pred CCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHH
Confidence 455677777765 56666654332 22234678999999987654
No 19
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=83.67 E-value=6 Score=27.08 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeechHH
Q 046558 70 AKAVLWGMQAAAKAGATSVILESDSKG 96 (136)
Q Consensus 70 ~~Al~~aL~~a~~~g~~~v~iesDs~~ 96 (136)
-..|..||+.|.++|+++|.+-.|...
T Consensus 116 ~emLkl~L~~ar~lgi~~Vlvtcd~dN 142 (174)
T COG3981 116 KEMLKLALEKARELGIKKVLVTCDKDN 142 (174)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 356889999999999999999888543
No 20
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=81.72 E-value=4.7 Score=25.16 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=31.6
Q ss_pred CeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHH
Q 046558 36 YLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQ 78 (136)
Q Consensus 36 ~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~ 78 (136)
+...+|.++...+|+++.+.............||..|+..+..
T Consensus 16 ~~~~vga~i~~~~g~i~~G~n~e~~~~~~~~hAE~~ai~~~~~ 58 (112)
T cd01283 16 SNFTVGAALLTKDGRIFTGVNVENASYGLTLCAERTAIGKAVS 58 (112)
T ss_pred CCCeEEEEEEECCCCEEEeEEeecCCCCCCcCHHHHHHHHHHH
Confidence 4566788888888988866655444455678999999877764
No 21
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=81.57 E-value=8.9 Score=25.60 Aligned_cols=39 Identities=15% Similarity=0.096 Sum_probs=25.0
Q ss_pred eeeEeEEEecCCCcEEEeeccccccc----------------CCHHHHHHHHHHHH
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSS----------------GDVELSEAKAVLWG 76 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~----------------~s~~~aE~~Al~~a 76 (136)
...+|.||.. +|+++..+....+.. .-..+||..||+.+
T Consensus 24 ~~~VGAVIV~-d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a 78 (151)
T TIGR02571 24 RLSVGATIVR-DKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQC 78 (151)
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHH
Confidence 3456666664 577877665544321 12469999999876
No 22
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=75.87 E-value=6.1 Score=23.92 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=29.2
Q ss_pred CCeeeEeEEEecCCCcEEEeeccccc-ccCCHHHHHHHHHHHHHHH
Q 046558 35 NYLAGLGAVVKNHKGETVAAAVSTFK-SSGDVELSEAKAVLWGMQA 79 (136)
Q Consensus 35 ~~~~g~G~vird~~G~~~~~~~~~~~-~~~s~~~aE~~Al~~aL~~ 79 (136)
.+...+|.+|.+++|..+..+..... ......+||..|+..+-+.
T Consensus 21 ~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~ 66 (102)
T PF00383_consen 21 CGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARN 66 (102)
T ss_dssp TTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHT
T ss_pred cCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhh
Confidence 45677899999976666665544332 2223568999988777765
No 23
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=74.62 E-value=21 Score=24.30 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q 046558 65 VELSEAKAVLWG 76 (136)
Q Consensus 65 ~~~aE~~Al~~a 76 (136)
..+||..|++.+
T Consensus 81 ~~HAE~nAi~~a 92 (168)
T PHA02588 81 EIHAELNAILFA 92 (168)
T ss_pred CccHHHHHHHHH
Confidence 569999999876
No 24
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=73.73 E-value=7.1 Score=29.30 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=31.1
Q ss_pred CCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHc---CCCeEEEeechHHHHHHHhcC
Q 046558 35 NYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKA---GATSVILESDSKGVIELINNK 104 (136)
Q Consensus 35 ~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~---g~~~v~iesDs~~vv~~i~~~ 104 (136)
.+..-+|+-||--+|+-+....... .+...+ +.-+..++..++.. .-.+|.+-|||+.|++.+++.
T Consensus 165 ~g~~~IGVHVRhGngeD~~~h~~~~---~D~e~~-L~~V~~ai~~ak~~~~~k~~~IFLATDSaeVid~fr~~ 233 (321)
T PF05830_consen 165 AGYSVIGVHVRHGNGEDIMDHAPYW---ADEERA-LRQVCTAIDKAKALAPPKPVRIFLATDSAEVIDQFRKK 233 (321)
T ss_dssp TTSEEEEEEE------------------HHHHHH-HHHHHHHHHHHHTS--SS-EEEEEEES-HHHHHHHHHH
T ss_pred CCCceEEEEEeccCCcchhccCccc---cCchHH-HHHHHHHHHHHHhccCCCCeeEEEecCcHHHHHHHHHH
Confidence 3567899999976675443332211 111111 22333455555433 347799999999999999873
No 25
>PRK05578 cytidine deaminase; Validated
Probab=72.60 E-value=12 Score=24.35 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=38.4
Q ss_pred eeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
...|..++..+|++..+..-......-..-||..|+..++.. -+..+..+.+-+|.
T Consensus 24 f~Vgaa~~~~~G~i~~G~nvEna~~~~~~CAE~~Ai~~av~~-G~~~i~~i~vv~~~ 79 (131)
T PRK05578 24 FPVGAALLTDDGRIYTGCNIENASYGLTNCAERTAIFKAISE-GGGRLVAIACVGET 79 (131)
T ss_pred CceEEEEEeCCCCEEEEEEeeCccccCCcCHHHHHHHHHHHc-CCCceEEEEEEecC
Confidence 358888999999988877643333335678899998887632 23356777777654
No 26
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=72.41 E-value=12 Score=25.50 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=27.2
Q ss_pred eeeEeEEEecCCCcEEEeeccccc-ccCCHHHHHHHHHHHHHH
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFK-SSGDVELSEAKAVLWGMQ 78 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~-~~~s~~~aE~~Al~~aL~ 78 (136)
...+|.||-+ +|+++..+..... ......+||..|+..|.+
T Consensus 32 ~~pvGAVIV~-~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~ 73 (172)
T PRK10860 32 EVPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGL 73 (172)
T ss_pred CCCEEEEEEe-CCEEEEEeeCCCCCCCCCccCHHHHHHHHHHH
Confidence 3467777776 5888776554332 223357899999998754
No 27
>PRK12411 cytidine deaminase; Provisional
Probab=72.19 E-value=12 Score=24.36 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=38.8
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
...+|..++..+|++..+..-......-..-||..|+..++.. -+..++.|.+-++.
T Consensus 23 ~~~VgAa~~t~~G~i~~G~nvEn~s~~~s~CAE~~Ai~~av~~-g~~~i~~i~v~~~~ 79 (132)
T PRK12411 23 KFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADT 79 (132)
T ss_pred CCceEEEEEeCCCCEEEEEEeecCCCCcCcCHHHHHHHHHHHC-CCCceEEEEEEeCC
Confidence 4568888999999998877644433444678899888877532 22346777776654
No 28
>PRK06848 hypothetical protein; Validated
Probab=67.57 E-value=18 Score=23.87 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=37.1
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
...+|..++..+|++..+..-.........-||-.|+..++.. -+..+..|.+-++
T Consensus 26 ~f~VgAa~l~~~G~i~~G~NvEnas~~~tiCAEr~Ai~~av~~-g~~~i~~i~~v~~ 81 (139)
T PRK06848 26 WHHVGAALRTKTGRIYAAVHLEAYVGRITVCAEAIAIGKAISE-GDHEIDTIVAVRH 81 (139)
T ss_pred CCcEEEEEEeCCCCEEEEEEeecCCCCcccCHHHHHHHHHHHc-CCCceEEEEEEec
Confidence 4567888889999988776644333445678999999887743 1223455544443
No 29
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=66.95 E-value=22 Score=22.94 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=26.2
Q ss_pred eeeEeEEEecCCCcEEEeeccccc----------------------ccCCHHHHHHHHHHHHHH
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFK----------------------SSGDVELSEAKAVLWGMQ 78 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~----------------------~~~s~~~aE~~Al~~aL~ 78 (136)
...+|.||.+. |+++..+..... ......+||..||..+-+
T Consensus 19 ~~~VGAViv~~-~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a~~ 81 (131)
T cd01286 19 RRQVGAVIVKD-KRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAAR 81 (131)
T ss_pred CCCEEEEEEEC-CEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHHhH
Confidence 34577777764 667765544332 113467999999988754
No 30
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=56.68 E-value=16 Score=24.77 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCCeEEEeech
Q 046558 73 VLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 73 l~~aL~~a~~~g~~~v~iesDs 94 (136)
+..||+.+.+.|++.|++||+-
T Consensus 106 vr~aId~m~~~g~~eVvLeTe~ 127 (165)
T KOG3139|consen 106 VRKAIDAMRSRGYSEVVLETEV 127 (165)
T ss_pred HHHHHHHHHHCCCcEEEEeccc
Confidence 5678999999999999999985
No 31
>PRK15000 peroxidase; Provisional
Probab=56.06 E-value=37 Score=23.59 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=33.4
Q ss_pred eEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 39 GLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 39 g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
-=+.++-|.+|.+........+. .....|++.++.+|++..+.|
T Consensus 125 ~r~tfiID~~G~I~~~~~~~~~~--gr~~~eilr~l~al~~~~~~~ 168 (200)
T PRK15000 125 LRGSFLIDANGIVRHQVVNDLPL--GRNIDEMLRMVDALQFHEEHG 168 (200)
T ss_pred EeEEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHhhhHHhcC
Confidence 34567779999988876655442 347889999999999988775
No 32
>COG4718 Phage-related protein [Function unknown]
Probab=55.63 E-value=2 Score=27.05 Aligned_cols=20 Identities=35% Similarity=0.758 Sum_probs=18.0
Q ss_pred CccccccCCCCCCCCcCCCC
Q 046558 1 EDFLAEQNNVQQSQWSPPEE 20 (136)
Q Consensus 1 ~~~~~~~~~~~~~~W~~P~~ 20 (136)
+|||+.+..++.=.|.||-.
T Consensus 61 ~aFL~rHgg~ksFlWTpPyg 80 (111)
T COG4718 61 EAFLSRHGGVKAFLWTPPYG 80 (111)
T ss_pred HHHHHhcCcEEEEEecCCCC
Confidence 58999999999999999865
No 33
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=55.00 E-value=6.2 Score=28.78 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=28.9
Q ss_pred HHHHHHcCCCeEEEeechHHHHHH-HhcCCCCCCchHHHHHHHHHH
Q 046558 77 MQAAAKAGATSVILESDSKGVIEL-INNKRSTLTDTFWVIFDIIEA 121 (136)
Q Consensus 77 L~~a~~~g~~~v~iesDs~~vv~~-i~~~~~~~~~~~~~i~~i~~l 121 (136)
-+.+...-..++.+||||..+--. ..++.+.+......++.+..+
T Consensus 189 ~ev~~~iPldrLL~ETDsPyl~P~p~rGkrNeP~~v~~v~~~iAel 234 (256)
T COG0084 189 REVARELPLDRLLLETDAPYLAPVPYRGKRNEPAYVRHVAEKLAEL 234 (256)
T ss_pred HHHHHhCCHhHeEeccCCCCCCCcCCCCCCCCchHHHHHHHHHHHH
Confidence 456667788999999999998655 333344444444455444443
No 34
>PRK08298 cytidine deaminase; Validated
Probab=53.55 E-value=49 Score=21.72 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=35.4
Q ss_pred eEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 39 GLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 39 g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
.+|..++..+|++..+..-.....+...=||..|+..++.. -...+..|.+-+|.
T Consensus 24 ~VgAAllt~dG~i~tG~NvEnas~~~t~CAEr~Ai~~av~~-G~~~~~~i~v~~~~ 78 (136)
T PRK08298 24 GGAAAMRVEDGTILTSVAPEVINASTELCMETGAICEAHKL-QKRVTHSICVAREN 78 (136)
T ss_pred ceeEEEEeCCCCEEEEEeecCCCCCcchhHHHHHHHHHHHC-CCceEEEEEEEcCC
Confidence 68888888999998876543343455678999998877632 11123445554443
No 35
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=53.20 E-value=70 Score=23.40 Aligned_cols=54 Identities=13% Similarity=0.018 Sum_probs=37.2
Q ss_pred eeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
.-+|+|+ |-+|++-. ...++.......+-+.++.+.++++.++|++.|.++.=|
T Consensus 28 ~HvAiIm-DGNrRwA~--~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS 81 (256)
T PRK14828 28 GHVGIIV-DGNRRWAR--KAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLS 81 (256)
T ss_pred CEEEEEe-cCChHHHH--HcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 3455555 66665532 222222114566888999999999999999999998776
No 36
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=53.06 E-value=20 Score=27.08 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=26.0
Q ss_pred eEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHH
Q 046558 39 GLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQ 78 (136)
Q Consensus 39 g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~ 78 (136)
-+|+||.+ +|+++..+.... ....+||..|+..|.+
T Consensus 20 ~vGaviv~-~~~ii~~g~n~~---~~~~HAE~~ai~~a~~ 55 (344)
T TIGR00326 20 LVGCVIVK-NGEIVGEGAHQK---AGEPHAEVHALRQAGE 55 (344)
T ss_pred CEEEEEEe-CCEEEEEeeCCC---CCCCCHHHHHHHHhcc
Confidence 47777777 788887665543 2357999999988644
No 37
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=52.34 E-value=45 Score=19.30 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=29.2
Q ss_pred eeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHH-HHcC---CCeEEEeechH
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAA-AKAG---ATSVILESDSK 95 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a-~~~g---~~~v~iesDs~ 95 (136)
+--|+++-+.+|..+.. ...-..-.....|.+.+++.+.+.+ .+.+ ++.+.++++..
T Consensus 14 gv~~~~l~~~dG~~i~~-~~~~~~~~~~~aa~~a~~~~~~~~~~~~l~~~~~~~v~i~~~~~ 74 (91)
T PF03259_consen 14 GVRGAVLVDKDGLVIAS-SGIDDDDAEKLAAMAASLLAAAEKLAKELGEGELEQVRIETEKG 74 (91)
T ss_dssp TEEEEEEEETTSEEEEE-TSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEEEESSE
T ss_pred CeeEEEEEcCCCCEEEE-ecCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEECCC
Confidence 34578888999998877 1111111122222333333333322 3333 68888888753
No 38
>PRK13191 putative peroxiredoxin; Provisional
Probab=51.87 E-value=42 Score=23.64 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=32.0
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
+.+|-|.+|.+.......+.. ..+..|++.++.+|+.+.+.|
T Consensus 126 ~tfIID~~G~Ir~~~~~~~~~--gr~~~eilr~l~alq~~~~~~ 167 (215)
T PRK13191 126 AVFIVDDKGTVRLILYYPMEI--GRNIDEILRAIRALQLVDKAG 167 (215)
T ss_pred EEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHhhhhhhcC
Confidence 567889999888776655442 347889999999999877664
No 39
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=51.34 E-value=70 Score=21.24 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=41.3
Q ss_pred CCCCCCCCcCCC---CCcEEEEeceeEecCCCeeeEeEEEec-CCC----cEEEeeccccc-ccCCHHHHHHHHHHHHHH
Q 046558 8 NNVQQSQWSPPE---EGWLKVNVDDAMDRVNYLAGLGAVVKN-HKG----ETVAAAVSTFK-SSGDVELSEAKAVLWGMQ 78 (136)
Q Consensus 8 ~~~~~~~W~~P~---~~~~k~n~Dgs~~~~~~~~g~G~vird-~~G----~~~~~~~~~~~-~~~s~~~aE~~Al~~aL~ 78 (136)
++.+.+++.+.. ..-+-.++|||-. ..|..+.+|. .+| .++.+.++--+ ...|.-.-|+.|+..|.+
T Consensus 64 ~~i~iPR~i~~~~~~~~~L~~F~DAS~~----aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~ 139 (159)
T PF05380_consen 64 SPIRIPRCIPISDYRSVELHVFCDASES----AYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVR 139 (159)
T ss_pred ccccCCcccccccccceeeeEeeccccc----ceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHH
Confidence 455667766533 2356778898743 2233333454 223 24444443221 124888999999999999
Q ss_pred HHHH
Q 046558 79 AAAK 82 (136)
Q Consensus 79 ~a~~ 82 (136)
++..
T Consensus 140 l~~~ 143 (159)
T PF05380_consen 140 LANT 143 (159)
T ss_pred HHHH
Confidence 8863
No 40
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=49.70 E-value=51 Score=22.70 Aligned_cols=41 Identities=17% Similarity=0.045 Sum_probs=31.5
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHc
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKA 83 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~ 83 (136)
+.+|-|.+|.+......... ......|+++.+.+|+....+
T Consensus 121 ~tfIID~~G~I~~~~~~~~~--~~~~~~eil~~l~alq~~~~~ 161 (187)
T PRK10382 121 ATFVVDPQGIIQAIEVTAEG--IGRDASDLLRKIKAAQYVASH 161 (187)
T ss_pred EEEEECCCCEEEEEEEeCCC--CCCCHHHHHHHHHhhhhHhhc
Confidence 45777999998887654433 345788999999999998776
No 41
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=49.18 E-value=89 Score=21.91 Aligned_cols=48 Identities=23% Similarity=0.179 Sum_probs=35.5
Q ss_pred CCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 35 NYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 35 ~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
.+.+-=|.+|-|.+|.+-.......+ ..-+.-|.+.++.|||+..++|
T Consensus 120 ~g~a~R~~FIIDp~g~ir~~~v~~~~--iGRn~dEilR~idAlq~~~~hg 167 (194)
T COG0450 120 EGLALRGTFIIDPDGVIRHILVNPLT--IGRNVDEILRVIDALQFVAKHG 167 (194)
T ss_pred CCcceeEEEEECCCCeEEEEEEecCC--CCcCHHHHHHHHHHHHHHHHhC
Confidence 34455688899999977665554443 2456779999999999988776
No 42
>PRK13190 putative peroxiredoxin; Provisional
Probab=45.95 E-value=63 Score=22.38 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=31.9
Q ss_pred EeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 40 LGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 40 ~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
=+.+|-|.+|.+......... ...+..|+..++.+|+...+.|
T Consensus 118 p~~fiId~~G~I~~~~~~~~~--~gr~~~ellr~l~~l~~~~~~~ 160 (202)
T PRK13190 118 RGVFIIDPNQIVRWMIYYPAE--TGRNIDEIIRITKALQVNWKRK 160 (202)
T ss_pred eEEEEECCCCEEEEEEEeCCC--CCCCHHHHHHHHHHhhhHHhcC
Confidence 466888999988766544433 2357889999999999988775
No 43
>PF05854 MC1: Non-histone chromosomal protein MC1; InterPro: IPR008674 This family consists of archaeal chromosomal protein MC1 sequences which protect DNA against thermal denaturation [].; GO: 0042262 DNA protection; PDB: 1T23_A 2KHL_A.
Probab=44.78 E-value=12 Score=22.71 Aligned_cols=20 Identities=5% Similarity=0.199 Sum_probs=16.5
Q ss_pred EEEecCCCcEEEeecccccc
Q 046558 42 AVVKNHKGETVAAAVSTFKS 61 (136)
Q Consensus 42 ~vird~~G~~~~~~~~~~~~ 61 (136)
+++||.+|.-+..+++..+.
T Consensus 6 F~Lr~~~G~E~gvFtG~~Pr 25 (93)
T PF05854_consen 6 FALRDEDGNEIGVFTGAQPR 25 (93)
T ss_dssp EEEETTTTSEEEEEEESSCC
T ss_pred EEEEcCCCccccEEeCCCHH
Confidence 78999999998888876554
No 44
>PF05939 Phage_min_tail: Phage minor tail protein; InterPro: IPR010265 This entry is represented by Bacteriophage lambda, GpM, the minor tail protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of a series of phage minor tail proteins and related sequences from several bacterial species.
Probab=43.89 E-value=10 Score=23.77 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=22.7
Q ss_pred CccccccCCCCCCCCcCCCCCcEEEEeceeEe
Q 046558 1 EDFLAEQNNVQQSQWSPPEEGWLKVNVDDAMD 32 (136)
Q Consensus 1 ~~~~~~~~~~~~~~W~~P~~~~~k~n~Dgs~~ 32 (136)
+|||.++..+..=.|.||....-..-++..+.
T Consensus 59 ~~FL~~h~G~~sF~WtpP~~~~~~~~~~~~~~ 90 (109)
T PF05939_consen 59 EAFLDRHGGVKSFLWTPPGGEKGLYVCCSWWS 90 (109)
T ss_pred HHHHHHCCCceEEEEECCCCCEEEEEEcccEE
Confidence 47999999888889999976544333454443
No 45
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=42.44 E-value=82 Score=19.45 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=32.6
Q ss_pred CeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHH
Q 046558 36 YLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQ 78 (136)
Q Consensus 36 ~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~ 78 (136)
..+|+--.+.|.+|..-.-++..+...+.-...|+.++..+|-
T Consensus 31 t~~GF~~tl~D~~G~~HeLgtntfgl~S~l~~~eV~~la~~la 73 (96)
T PF11080_consen 31 TRAGFSTTLTDEDGNPHELGTNTFGLISALSAEEVAQLARGLA 73 (96)
T ss_pred HhcCceeEEecCCCCEeecCCCeEEEEecCCHHHHHHHHHHHh
Confidence 3567888999999998887877777665555667777777765
No 46
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=42.19 E-value=14 Score=26.75 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.1
Q ss_pred HHHHHcCCCeEEEeechHHH
Q 046558 78 QAAAKAGATSVILESDSKGV 97 (136)
Q Consensus 78 ~~a~~~g~~~v~iesDs~~v 97 (136)
+.+......+|.+|||+..+
T Consensus 192 ~~~~~ipldriL~ETD~P~l 211 (258)
T PRK11449 192 DVIAKLPLASLLLETDAPDM 211 (258)
T ss_pred HHHHhCChhhEEEecCCCCC
Confidence 44556788999999999875
No 47
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=42.19 E-value=87 Score=21.66 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=30.8
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
+.+|-|.+|.+.......... .....|++.++.+|+...+.|
T Consensus 119 ~~fiID~~G~I~~~~~~~~~~--gr~~~ell~~l~~lq~~~~~~ 160 (203)
T cd03016 119 AVFIIDPDKKIRLILYYPATT--GRNFDEILRVVDALQLTDKHK 160 (203)
T ss_pred EEEEECCCCeEEEEEecCCCC--CCCHHHHHHHHHHHhhHhhcC
Confidence 467789999888766554432 235788999999999887665
No 48
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=42.09 E-value=63 Score=23.67 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=32.3
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
+.+|-|.+|.+........+. .....|++.++.||+...+.|
T Consensus 190 ~tFIID~dG~I~~~~~~~~~~--gr~v~eiLr~l~alq~~~~~g 231 (261)
T PTZ00137 190 ASVLVDKAGVVKHVAVYDLGL--GRSVDETLRLFDAVQFAEKTG 231 (261)
T ss_pred EEEEECCCCEEEEEEEeCCCC--CCCHHHHHHHHHHhchhhhcC
Confidence 457779999988877655442 347889999999999987775
No 49
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=40.86 E-value=1e+02 Score=21.08 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=29.7
Q ss_pred eeeEeEEEecCCCcEEEeeccc-ccccCCHHHHHHHHHHHHHHHHHHc
Q 046558 37 LAGLGAVVKNHKGETVAAAVST-FKSSGDVELSEAKAVLWGMQAAAKA 83 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~-~~~~~s~~~aE~~Al~~aL~~a~~~ 83 (136)
..-+|+|+-+.+|.++..+... ........+||+.++..=......+
T Consensus 31 ~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~ 78 (169)
T KOG1018|consen 31 EVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSL 78 (169)
T ss_pred CCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhc
Confidence 3446777777677777766554 3333456679999998844333333
No 50
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=40.72 E-value=61 Score=23.51 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCeEEEeechHHHHHHHhcC
Q 046558 73 VLWGMQAAAKAGATSVILESDSKGVIELINNK 104 (136)
Q Consensus 73 l~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~ 104 (136)
+.+..+-|.+-|..+|++.||...+.+.+++-
T Consensus 31 I~rV~e~a~~s~~~rvvVATDde~I~~av~~~ 62 (247)
T COG1212 31 IVRVAERALKSGADRVVVATDDERIAEAVQAF 62 (247)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 44556677777999999999999999999874
No 51
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=39.49 E-value=1.8e+02 Score=22.48 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHHhcC
Q 046558 64 DVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINNK 104 (136)
Q Consensus 64 s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~ 104 (136)
+...|++..+..+++....+|+.++.|+.-...+++.+-..
T Consensus 114 ~~~~aDaEvi~l~~~~L~~lgl~~~~i~ig~~~il~~ll~~ 154 (373)
T PRK12295 114 DPAAADAEVLALALEALAALGPGDLEVRLGDVGLFAALVDA 154 (373)
T ss_pred CCccchHHHHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHH
Confidence 34456666666778888899999998887777777777554
No 52
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=37.85 E-value=59 Score=23.81 Aligned_cols=58 Identities=12% Similarity=0.025 Sum_probs=32.7
Q ss_pred EEEeceeEecCCCeeeEeE-EEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 24 KVNVDDAMDRVNYLAGLGA-VVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 24 k~n~Dgs~~~~~~~~g~G~-vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
-+|.||....+.+....|. .-|+..+ .....+-|..|+..-|+......-.++.+..|
T Consensus 91 ~~NPDGv~~gn~R~~~~G~DLNR~w~~------------p~~~~~PEv~av~~~i~~~~~~~~~~i~~~lD 149 (261)
T cd06908 91 MLNPDGVFLGNYRCSLMGHDLNRHWHD------------PSPWAHPTLHAVKNLLKELDNDSTTQLDFYID 149 (261)
T ss_pred eecCcceeecCCcCcCcCcCCCCCCCC------------CCcccChHHHHHHHHHHHhhhccccCeeEEEE
Confidence 3699999987666555554 3333321 11224568889888887654422233444333
No 53
>PRK13189 peroxiredoxin; Provisional
Probab=37.57 E-value=1e+02 Score=21.77 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=30.4
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
+.+|-|.+|.+.......... ..+..|++.++.+|+...+.|
T Consensus 128 ~tfIID~~G~Ir~~~~~~~~~--gr~~~eilr~l~alq~~~~~~ 169 (222)
T PRK13189 128 AVFIIDPKGIIRAILYYPQEV--GRNMDEILRLVKALQTSDEKG 169 (222)
T ss_pred EEEEECCCCeEEEEEecCCCC--CCCHHHHHHHHHHhhhHhhcC
Confidence 568889999887665444432 334678999999999887775
No 54
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=37.49 E-value=42 Score=21.38 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=33.7
Q ss_pred EEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHH------------------HHHHHHHHHHHHcC
Q 046558 23 LKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEA------------------KAVLWGMQAAAKAG 84 (136)
Q Consensus 23 ~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~------------------~Al~~aL~~a~~~g 84 (136)
+-+++|..........|.-++.-|..-++....+..++ .++..||. .....|+-.|+.+|
T Consensus 4 v~V~Tds~hpv~~~~~~~~Vi~LD~~erle~~ls~~Lp--adp~qA~~~~~~~l~sp~~~~~q~~l~~Ayqgv~~Aw~lG 81 (113)
T TIGR03757 4 VVVFTDSAHPPVNATPGTRVIELDAPERLEAQLSAGLP--ADPQQAAAQARQRLQSPDWARLQRRLAQAYQGVADAWQLG 81 (113)
T ss_pred EEEEeCCCCCcccCCCCcEEEEeccHHHHHHHHhccCC--CCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 34666765553333445556655654444333333333 34444443 34445777788888
Q ss_pred CCeE
Q 046558 85 ATSV 88 (136)
Q Consensus 85 ~~~v 88 (136)
++++
T Consensus 82 i~k~ 85 (113)
T TIGR03757 82 VTKI 85 (113)
T ss_pred CccC
Confidence 7653
No 55
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=36.44 E-value=1.1e+02 Score=20.26 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=30.4
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGA 85 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~ 85 (136)
..++-|.+|.+........+. .....|++..+..++.+.++|.
T Consensus 122 ~~~lID~~G~I~~~~~~~~~~--~~~~~~il~~l~~~~~~~~~~~ 164 (173)
T cd03015 122 GTFIIDPEGIIRHITVNDLPV--GRSVDETLRVLDALQFVEEHGE 164 (173)
T ss_pred EEEEECCCCeEEEEEecCCCC--CCCHHHHHHHHHHhhhhhhcCC
Confidence 478889999988877544332 2345778888888888887763
No 56
>KOG4609 consensus Predicted phosphoglycerate mutase [General function prediction only]
Probab=35.21 E-value=71 Score=23.06 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=28.4
Q ss_pred cCCCCCcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccc
Q 046558 16 SPPEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKS 61 (136)
Q Consensus 16 ~~P~~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~ 61 (136)
+-||.||+.+|. +.+.+-|+.....|.+...+.+..+.
T Consensus 238 q~PpegWlR~nl--------nh~SiTWlti~PsG~vsvr~lGdsGf 275 (284)
T KOG4609|consen 238 QFPPEGWLRMNL--------NHCSITWLTISPSGHVSVRSLGDSGF 275 (284)
T ss_pred cCCcchhheecc--------cCcceEEEEEccCCcEEEEeccccCC
Confidence 679999999986 45667788888899887755544443
No 57
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=34.79 E-value=68 Score=24.65 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=23.8
Q ss_pred eEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHH
Q 046558 39 GLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQ 78 (136)
Q Consensus 39 g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~ 78 (136)
-+|+||-+ +|+++..+..... ...+||..|+..+-+
T Consensus 26 ~vGaviv~-~g~ii~~g~n~~~---g~~HAE~~ai~~a~~ 61 (367)
T PRK10786 26 NVGCVIVK-DGEIVGEGYHQRA---GEPHAEVHALRMAGE 61 (367)
T ss_pred CEEEEEEe-CCEEEEEEeCCCC---CCCCHHHHHHHHHhh
Confidence 35666664 6888776654332 237999999988644
No 58
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=34.39 E-value=1.1e+02 Score=21.07 Aligned_cols=40 Identities=15% Similarity=-0.030 Sum_probs=29.0
Q ss_pred eeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHH
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGM 77 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL 77 (136)
.-+|+++|-++|++..+.--..........||-.|+..++
T Consensus 42 fkVGA~~r~ssGrif~G~NVEn~~~~~sIcAEr~ai~~l~ 81 (173)
T KOG0833|consen 42 FKVGAAGRASSGRIFLGVNVENASYHHSICAERFAIANLA 81 (173)
T ss_pred CceEEEEEecCCcEEEeeeecccCCCCcccHHHHHHHHHH
Confidence 3478888989999887766555556667788887775543
No 59
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=34.37 E-value=1.2e+02 Score=18.97 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=32.6
Q ss_pred EEEecCCCcEEEeeccc-cc----ccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 42 AVVKNHKGETVAAAVST-FK----SSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 42 ~vird~~G~~~~~~~~~-~~----~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
+.+.|..|.++...+.- ++ .-.++..|+ .+....++.+.++|++.|.+..-
T Consensus 14 vtlTd~~G~~~~~~S~G~~gfK~~rk~t~~Aa~-~~a~~~~~~~~~~gi~~v~v~ik 69 (110)
T PF00411_consen 14 VTLTDLKGNVLFWSSAGSLGFKGARKSTPYAAQ-QAAEKIAKKAKELGIKTVRVKIK 69 (110)
T ss_dssp EEEEETTSEEEEEEETTTSSTTTTCGSSHHHHH-HHHHHHHHHHHCTTEEEEEEEEE
T ss_pred EEEECCCCCEEEEEeccccccccccccCHHHHH-HHHHHHHHHHHHcCCeEEEEEEc
Confidence 45668888777654432 11 123454444 44567788889999999988654
No 60
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=34.29 E-value=1.9e+02 Score=21.40 Aligned_cols=52 Identities=10% Similarity=-0.013 Sum_probs=37.1
Q ss_pred eEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 39 GLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 39 g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
-+|+|+ |-++++- ....++. .....+-+..+.+-++++.++|++.|.++.=|
T Consensus 44 HVAiIm-DGNrRwA--k~~g~~~-~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS 95 (275)
T PRK14835 44 HLGLIL-DGNRRFA--RALGLQR-EMGHEFGVQKAYEVLEWCLELGIPTVTIWVFS 95 (275)
T ss_pred EEEEEe-cCchHHH--HHCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 456655 6666553 2222332 34667788899999999999999999998776
No 61
>PRK13599 putative peroxiredoxin; Provisional
Probab=33.89 E-value=1.2e+02 Score=21.29 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=30.6
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
+.+|-|.+|.+......... ...+..|++.++.+|+.+.+.+
T Consensus 121 ~tfIID~dG~Ir~~~~~p~~--~gr~~~eilr~l~~lq~~~~~~ 162 (215)
T PRK13599 121 AVFIVDDKGTIRLIMYYPQE--VGRNVDEILRALKALQTADQYG 162 (215)
T ss_pred EEEEECCCCEEEEEEEcCCC--CCCCHHHHHHHHHHhhhhhhcC
Confidence 45777999988877543332 3457789999999999887664
No 62
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=32.88 E-value=76 Score=24.61 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=23.5
Q ss_pred EeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHH
Q 046558 40 LGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQ 78 (136)
Q Consensus 40 ~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~ 78 (136)
+|+||-+ +|+++..+..... ...+||..|+..|-.
T Consensus 56 VGaViV~-~g~Ii~~g~n~~~---g~~HAEi~Ai~~a~~ 90 (380)
T PLN02807 56 VGCVIVK-DGRIVGEGFHPKA---GQPHAEVFALRDAGD 90 (380)
T ss_pred EEEEEEE-CCEEEEEEeCCCC---CCcCHHHHHHHHhhh
Confidence 5666654 4888876654332 236999999988754
No 63
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=32.66 E-value=1.5e+02 Score=19.76 Aligned_cols=83 Identities=10% Similarity=0.012 Sum_probs=42.1
Q ss_pred CCcCCCCCcEEEEeceeEecCCCeeeE-------eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCC-
Q 046558 14 QWSPPEEGWLKVNVDDAMDRVNYLAGL-------GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGA- 85 (136)
Q Consensus 14 ~W~~P~~~~~k~n~Dgs~~~~~~~~g~-------G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~- 85 (136)
.|.-...-.-+.++||..+...+..+- +..++|.-..-+.+...+. ......+||+-++..|.+ .|.
T Consensus 23 ~~~~~~~tvA~~~I~G~~f~gvN~~~rp~ad~n~p~~~~dri~~~~~~~~~pn-~~~~~~HAE~~aiqqA~d----~G~~ 97 (146)
T PF14437_consen 23 VKGADPGTVAEGEINGQKFFGVNSTARPIADPNLPTLIRDRIAAKIPGKPGPN-NNMAKAHAEAGAIQQAYD----AGKT 97 (146)
T ss_pred ccCCCcceEEEEEECCeEEEeeCCCCcccCCCCCcceeccccccccccccCcc-chhHHHHHHHHHHHHHHH----hcCc
Confidence 443444446678888886654333332 2223321111111111111 224566667666555554 455
Q ss_pred --CeEEEeechHHHHHHHh
Q 046558 86 --TSVILESDSKGVIELIN 102 (136)
Q Consensus 86 --~~v~iesDs~~vv~~i~ 102 (136)
+.+.+..| +.+...+.
T Consensus 98 ~g~~~tm~Vd-r~vC~~C~ 115 (146)
T PF14437_consen 98 VGRSMTMYVD-RDVCGYCG 115 (146)
T ss_pred cCCeEEEEEC-cccchHHH
Confidence 58888888 77776665
No 64
>PLN02182 cytidine deaminase
Probab=32.62 E-value=98 Score=23.71 Aligned_cols=40 Identities=18% Similarity=-0.007 Sum_probs=28.5
Q ss_pred eeEeEEEecCCCcEEEeecccccccCC--HHHHHHHHHHHHH
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKSSGD--VELSEAKAVLWGM 77 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~~~s--~~~aE~~Al~~aL 77 (136)
.-+|.+++..+|++..+..-.....+- ...||-.|+..+.
T Consensus 66 F~VGAa~l~~sG~iy~GvNVEnas~pl~~tICAEr~AI~~A~ 107 (339)
T PLN02182 66 YKVGAVGRASSGRVYLGVNVDFPGLPLHHSIHAEQFLVTNLA 107 (339)
T ss_pred CeeeEEEEeCCCCEEEEEEeecCCCccCCccCHHHHHHHHHH
Confidence 457888889999988877644433222 5689999887765
No 65
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=31.02 E-value=2.2e+02 Score=21.11 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHHhcC
Q 046558 64 DVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINNK 104 (136)
Q Consensus 64 s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~ 104 (136)
+...+|+..+..+++...++|+.++.+..-...+++.+-..
T Consensus 121 ~~~~adaEvi~l~~~~l~~lg~~~~~i~l~~~~il~~il~~ 161 (314)
T TIGR00443 121 GGPAADAEVIALLIEALKALGLKDFKIELGHVGLVRALLEE 161 (314)
T ss_pred CCchhHHHHHHHHHHHHHHcCCCCeEEEeCcHHHHHHHHHH
Confidence 34467777777888889999998888877777777666554
No 66
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=30.84 E-value=1.6e+02 Score=21.07 Aligned_cols=83 Identities=11% Similarity=0.101 Sum_probs=51.1
Q ss_pred CcEEEEeceeEecCCCeeeEeEEEecC--CCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEE-e----ec
Q 046558 21 GWLKVNVDDAMDRVNYLAGLGAVVKNH--KGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVIL-E----SD 93 (136)
Q Consensus 21 ~~~k~n~Dgs~~~~~~~~g~G~vird~--~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~i-e----sD 93 (136)
..+.-..+|+....++..++=...+.. .+.++..... + ...++..+|.+|.+.+|+.+...+-++..| + .|
T Consensus 64 e~~i~~~~G~y~~~p~t~~~k~yr~k~~~~~~~lt~~~~-~-~~~~n~s~d~la~ly~~~~~~~~~nrk~~i~y~~~~~d 141 (225)
T COG3341 64 EYIISWAKGDYDAKPGTQEFKEYRGKCTIEYSWLTESSE-F-SIKSNDSGDVLAKLYGLRYEVPLDNRKSVINYLTPGND 141 (225)
T ss_pred hccceeccCCccccCCCcceeEEeccccccceeeeeecc-c-ccccCchHHHHHHhccccccccccCccceeeccCCcch
Confidence 344444556555544444433333211 1234443332 2 235788999999999999999988776666 5 68
Q ss_pred hHHHHHHHhcCC
Q 046558 94 SKGVIELINNKR 105 (136)
Q Consensus 94 s~~vv~~i~~~~ 105 (136)
|..-++.+....
T Consensus 142 s~a~~k~~k~~~ 153 (225)
T COG3341 142 SWAYFKYVKDKC 153 (225)
T ss_pred hHHHHHHHhhhh
Confidence 888888777644
No 67
>PRK09027 cytidine deaminase; Provisional
Probab=30.57 E-value=1.2e+02 Score=22.79 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=34.3
Q ss_pred eeEeEEEecCCCcEEEeeccccc--ccCCHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFK--SSGDVELSEAKAVLWGMQAAAKAGATSVIL 90 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~--~~~s~~~aE~~Al~~aL~~a~~~g~~~v~i 90 (136)
.-+|.+++..+|++..+..-... .......||--|+..++.. -+.++..|.+
T Consensus 71 F~VGAa~~~~sG~iy~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~-Ge~~i~~I~v 124 (295)
T PRK09027 71 FNVGAIARGVSGNFYFGANMEFAGAALQQTVHAEQSAISHAWLR-GEKAIADITV 124 (295)
T ss_pred CcEEEEEEeCCCCEEEEEeeccCCCCCCCCcCHHHHHHHHHHHC-CCCceEEEEE
Confidence 34688888899998877664332 2345688999998887632 2234555554
No 68
>PF04775 Bile_Hydr_Trans: Acyl-CoA thioester hydrolase/BAAT N-terminal region; InterPro: IPR006862 This entry presents the N-termini of acyl-CoA thioester hydrolase and bile acid-CoA:amino acid N-acetyltransferase (BAAT) []. This region is not thought to contain the active site of either enzyme. Thioesterase isoforms have been identified in peroxisomes, cytoplasm and mitochondria, where they are thought to have distinct functions in lipid metabolism []. For example, in peroxisomes, the hydrolase acts on bile-CoA esters [].; GO: 0016290 palmitoyl-CoA hydrolase activity, 0006629 lipid metabolic process; PDB: 3HLK_B 3K2I_B.
Probab=30.39 E-value=21 Score=22.91 Aligned_cols=43 Identities=7% Similarity=0.177 Sum_probs=27.5
Q ss_pred eeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHH
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAK 82 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~ 82 (136)
-..+...-|.+|.+-.....++++ |=..+|.|+|++.|+-+..
T Consensus 33 ~S~A~f~Ad~~G~VDl~~~~p~~G--sY~gvdpMGLfWSm~p~~~ 75 (126)
T PF04775_consen 33 QSYATFRADENGIVDLSRDAPLGG--SYTGVDPMGLFWSMKPTPG 75 (126)
T ss_dssp EEEEEEE--TTS-EETTTS-EEEE--SSEES-TTHHHHT-EE---
T ss_pred EEEEEEEcCCCCeEEeccCCCCCc--EEcCcccccceEEcccccc
Confidence 467888889999888887777764 5667899999999987643
No 69
>PLN02402 cytidine deaminase
Probab=30.13 E-value=1.2e+02 Score=22.87 Aligned_cols=52 Identities=15% Similarity=-0.020 Sum_probs=32.5
Q ss_pred eeEeEEEecCCCcEEEeecccccccCC--HHHHHHHHHHHHHHHHHHcCCCeEEE
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKSSGD--VELSEAKAVLWGMQAAAKAGATSVIL 90 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~~~s--~~~aE~~Al~~aL~~a~~~g~~~v~i 90 (136)
.-+|.+++..+|++..+..-.....+- ...||-.|+..++.. -+..+..|.+
T Consensus 46 F~VGAa~l~~~G~i~~GvNVEnasy~l~~tiCAEr~Ai~~av~~-G~~~i~~iaV 99 (303)
T PLN02402 46 YHVGAVGLGSSGRIFLGVNLEFPGLPLHHSVHAEQFLITNLTLN-AEPHLKYVAV 99 (303)
T ss_pred CeeeEEEEeCCCCEEEEEeeecCCCCCCCcccHHHHHHHHHHHc-CCCceEEEEE
Confidence 346888888899888776643333222 568999998877632 1223455544
No 70
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=28.76 E-value=1.8e+02 Score=19.78 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=30.0
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHc
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKA 83 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~ 83 (136)
+.+|-|.+|.+......... ......|+++.+.+++++.+.
T Consensus 121 ~tfiID~~G~I~~~~~~~~~--~~~~~~~ll~~l~~~~~~~~~ 161 (187)
T TIGR03137 121 GTFVIDPEGVIQAVEITDNG--IGRDASELLRKIKAAQYVAAH 161 (187)
T ss_pred EEEEECCCCEEEEEEEeCCC--CCCCHHHHHHHHHHhhhHHhc
Confidence 46778999998877654322 234677888888999998876
No 71
>CHL00041 rps11 ribosomal protein S11
Probab=28.59 E-value=1.6e+02 Score=18.67 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=30.9
Q ss_pred EEEecCCCcEEEeecccc-----cccCCHHHHHHHHHHHHHHHHHHcCCCeEEEee
Q 046558 42 AVVKNHKGETVAAAVSTF-----KSSGDVELSEAKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 42 ~vird~~G~~~~~~~~~~-----~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~ies 92 (136)
+-+.|..|+.+...+... ..-.++..|+..| ....+.+.++|++.|.+..
T Consensus 27 iTlTd~~G~~l~~~S~G~~gfKg~rK~T~~Aa~~~a-~~~~~~~~~~gi~~v~I~i 81 (116)
T CHL00041 27 VTVTDVRGRVISWSSAGACGFKGARKGTPFAAQTAA-ENAIRTVIDQGMKRAEVMI 81 (116)
T ss_pred EEEEcCCCCEEEEEecCceeeCCCccCCHHHHHHHH-HHHHHHHHHcCCcEEEEEE
Confidence 445566676665444221 1224555555544 4777888899999998864
No 72
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=28.53 E-value=1.6e+02 Score=18.56 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=34.1
Q ss_pred eeeEeEEEecCCCcEEEeeccc---c----cccCCHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 046558 37 LAGLGAVVKNHKGETVAAAVST---F----KSSGDVELSEAKAVLWGMQAAAKAGATSVIL 90 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~---~----~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~i 90 (136)
.-=++=+|.|..|.++.+.+.. + ....+...|...+.+.|- -|++.|+..|+|
T Consensus 25 khiyaQvidd~~g~tlasaST~ek~~~~~~~~~~n~~aA~~vG~lla~-ra~~~gi~~vvf 84 (109)
T CHL00139 25 KHIYAQIIDDTNGKTLVACSTLEPDVKSSLSSTSTCDASKLVGQKLAK-KSLKKGITKVVF 84 (109)
T ss_pred CeEEEEEEECCCCCEEEEEecCchhhhccccCCCCHHHHHHHHHHHHH-HHHHCCCCEEEE
Confidence 4445667888888888776631 1 123455556666665553 466789999988
No 73
>PF10298 WhiA_N: WhiA N-terminal LAGLIDADG-like domain; InterPro: IPR018478 This entry represents the N-terminal domain of sporulation factor WhiA []. This domain is related to the LAGLIDADG homing endonuclease domain while the C-terminal domain of WhiA is predicted to be a DNA binding helix-turn-helix domain [].; PDB: 3HYI_A 3HYJ_D.
Probab=27.89 E-value=89 Score=18.38 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHcCC----CeEEEeechHHHHHHHh
Q 046558 66 ELSEAKAVLWGMQAAAKAGA----TSVILESDSKGVIELIN 102 (136)
Q Consensus 66 ~~aE~~Al~~aL~~a~~~g~----~~v~iesDs~~vv~~i~ 102 (136)
..||+.|+ |.++-...+ -.+.++|++..+...+.
T Consensus 4 ~~AELaAl---ir~~G~l~~~~~~~~l~~~ten~~vARri~ 41 (86)
T PF10298_consen 4 RIAELAAL---IRFSGSLSISNGRISLEISTENAAVARRIY 41 (86)
T ss_dssp HHHHHHHH---HHHHEEECTTTTEEEE--EES-HHHHHHHH
T ss_pred HHHHHHHH---HHhCCEEEEECCEEEEEEEeCCHHHHHHHH
Confidence 46787777 344444443 37778888877665443
No 74
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=27.50 E-value=1.1e+02 Score=19.38 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCCeEEEeechHH
Q 046558 71 KAVLWGMQAAAKAGATSVILESDSKG 96 (136)
Q Consensus 71 ~Al~~aL~~a~~~g~~~v~iesDs~~ 96 (136)
..+..++++|.+.|+.+|.+++....
T Consensus 105 ~ll~~~~~~a~~~g~~~i~l~~~~~N 130 (150)
T PLN02706 105 KIIEALTEHARSAGCYKVILDCSEEN 130 (150)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecccc
Confidence 34666788899999999999886543
No 75
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=27.24 E-value=2e+02 Score=19.69 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=30.4
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
|.+|-|.+|.+......... .....-|++.++.+++.....+
T Consensus 129 ~~fiID~~G~i~~~~~~~~~--~~r~~~e~l~~l~a~~~~~~~~ 170 (199)
T PTZ00253 129 GLFIIDPKGMLRQITVNDMP--VGRNVEEVLRLLEAFQFVEKHG 170 (199)
T ss_pred EEEEECCCCEEEEEEecCCC--CCCCHHHHHHHHHhhhhHHhcC
Confidence 67788999988876554333 2345678889999998877654
No 76
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=27.03 E-value=1.1e+02 Score=20.47 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=22.4
Q ss_pred eEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHH
Q 046558 39 GLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWG 76 (136)
Q Consensus 39 g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~a 76 (136)
-.|.||-+. |+++..+...- .-..+||..||..|
T Consensus 29 ~VG~VIV~~-~~Ivg~G~h~~---aG~pHAEv~Al~~a 62 (146)
T COG0117 29 SVGCVIVKD-GEIVGEGYHEK---AGGPHAEVCALRMA 62 (146)
T ss_pred ceeEEEEEC-CEEEeeeecCC---CCCCcHHHHHHHHc
Confidence 357766653 47776554433 34568999999985
No 77
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=27.01 E-value=2.8e+02 Score=21.22 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCCeEEEeechHHHHHHHhcCCCCCCchHHHHHHHHHHhhcCCceEEEEE
Q 046558 72 AVLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHV 133 (136)
Q Consensus 72 Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v 133 (136)
-+..|.++|.+.+-++|.+ +++...-....+...+-++...+.|+++.+.+.
T Consensus 152 i~r~Af~~A~~r~~~~Vt~----------v~KaNvl~~t~glf~~~~~eva~~yP~V~~~~~ 203 (334)
T PRK08997 152 IVRFAYELARKEGRKKVTA----------VHKANIMKSTSGLFLKVAREVALRYPDIEFEEM 203 (334)
T ss_pred HHHHHHHHHHhcCCCeEEE----------EeCCCcchhhhHHHHHHHHHHHhhCCCeEEEee
Confidence 3677999999887667776 333222111122233344455667899888775
No 78
>PF06754 PhnG: Phosphonate metabolism protein PhnG; InterPro: IPR009609 This family consists of several bacterial phosphonate metabolism protein PhnG sequences. In Escherichia coli, the phn operon encodes proteins responsible for the uptake and breakdown of phosphonates. The exact function of PhnG is unknown, however it is thought likely that along with six other proteins PhnG makes up the the C-P (carbon-phosphorus) lyase [].; GO: 0015716 phosphonate transport, 0019634 phosphonate metabolic process
Probab=26.77 E-value=2e+02 Score=19.11 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=36.6
Q ss_pred CCCCCCCCcCCC-CCcEEEEe----ceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHH
Q 046558 8 NNVQQSQWSPPE-EGWLKVNV----DDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQA 79 (136)
Q Consensus 8 ~~~~~~~W~~P~-~~~~k~n~----Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~ 79 (136)
.+.....|.+|| .|.+-+-. .|+-|+-....-.-+.++-.+|.. ++. .+.+ .+...||+.|++.|+-.
T Consensus 28 ~~~~~~~~lr~Pe~GLvmvr~R~g~~g~~FnLGEv~VTr~~V~l~~g~~--G~~-~v~G-~d~~~A~~~Av~DAllq 100 (146)
T PF06754_consen 28 EPQPQVQVLRPPETGLVMVRGRDGGTGSPFNLGEVTVTRCAVRLEDGTV--GYG-YVLG-RDKRHAELAAVIDALLQ 100 (146)
T ss_pred ccCCCceEeecCCcceEEEEEEecCCCCceecceEEEEEEEEEeCCCCE--EEE-EEcC-CCHHHHHHHHHHHHHhC
Confidence 344455666655 66544432 233332112222345666555652 222 2333 68999999999998843
No 79
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=26.63 E-value=2.7e+02 Score=21.72 Aligned_cols=59 Identities=10% Similarity=0.003 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHHhcCCCCCCchHHHHHHHHHHhhcCCceEEEEE
Q 046558 64 DVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHV 133 (136)
Q Consensus 64 s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v 133 (136)
|....|- -+..|.++|.+.+-++|.+- .+........+...+.++...+.|+++.+.+.
T Consensus 182 Tr~~~eR-Iar~AF~~A~~r~~k~Vt~v----------~KaNvlk~tdglf~e~~~eva~eyPdI~~~~~ 240 (372)
T PLN00118 182 TRQASLR-VAEYAFHYAKTHGRKRVSAI----------HKANIMKKTDGLFLKCCREVAEKYPEIVYEEV 240 (372)
T ss_pred CHHHHHH-HHHHHHHHHHHcCCCeEEEE----------ECCccchhhhHHHHHHHHHHHhhCCCceEEee
Confidence 4444454 46789999998877777773 22221111122233344455567888888775
No 80
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=26.01 E-value=1.3e+02 Score=22.29 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEee
Q 046558 65 VELSEAKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 65 ~~~aE~~Al~~aL~~a~~~g~~~v~ies 92 (136)
.+-.=+.+..+++.++...|++.|++||
T Consensus 102 ~lGGls~~t~~~v~ll~aaG~D~IiiET 129 (266)
T PF03308_consen 102 SLGGLSRATRDAVRLLDAAGFDVIIIET 129 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CCCCccHhHHHHHHHHHHcCCCEEEEeC
Confidence 3344456788889999999999999998
No 81
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=25.32 E-value=2.7e+02 Score=21.27 Aligned_cols=51 Identities=12% Similarity=0.070 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCeEEEeechHHHHHHHhcCCCCCCchHHHHHHHHHHhhcCCceEEEEE
Q 046558 73 VLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHV 133 (136)
Q Consensus 73 l~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v 133 (136)
+..|.++|.+.+-++|.+- .+........+...+.++...+.|+++.+.|.
T Consensus 151 ~r~Af~~A~~r~~k~Vt~v----------~KaNvl~~t~glf~~~~~eva~~yp~v~~~~~ 201 (333)
T TIGR00175 151 ARYAFEYARKNGRKKVTAV----------HKANIMKLADGLFLNVCREVAKEYPDITFESM 201 (333)
T ss_pred HHHHHHHHHhcCCCeEEEE----------ECCccchhhHHHHHHHHHHHHHHCCCCeeeee
Confidence 5679999998877777773 22221111112233333445567888888775
No 82
>PRK05309 30S ribosomal protein S11; Validated
Probab=25.20 E-value=2e+02 Score=18.63 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=30.0
Q ss_pred EEEecCCCcEEEeeccc-cc----ccCCHHHHHHHHHHHHHHHHHHcCCCeEEEee
Q 046558 42 AVVKNHKGETVAAAVST-FK----SSGDVELSEAKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 42 ~vird~~G~~~~~~~~~-~~----~~~s~~~aE~~Al~~aL~~a~~~g~~~v~ies 92 (136)
+-+.|..|..+...+.- .+ .-.++..|+. |.....+.+.++|++.|.+..
T Consensus 31 itlTd~~G~~~~~~S~G~~gfKg~rK~T~~Aa~~-aa~~~~~~~~~~gi~~v~v~i 85 (128)
T PRK05309 31 VTITDRQGNVISWASAGGLGFKGSRKSTPYAAQV-AAEDAAKKAKEHGMKTVEVFV 85 (128)
T ss_pred EEEEcCCCCEEEEEecCccEeCCCccCCHHHHHH-HHHHHHHHHHHcCCcEEEEEE
Confidence 44556666655443321 11 1245555555 445677888999999998865
No 83
>PRK10425 DNase TatD; Provisional
Probab=24.91 E-value=40 Score=24.50 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=15.5
Q ss_pred HHHHcCCCeEEEeechHHHH
Q 046558 79 AAAKAGATSVILESDSKGVI 98 (136)
Q Consensus 79 ~a~~~g~~~v~iesDs~~vv 98 (136)
.+......++.+|||+..+.
T Consensus 189 ~~~~ipldrlLlETDaP~l~ 208 (258)
T PRK10425 189 LLPLIPAERLLLETDAPYLL 208 (258)
T ss_pred HHHhCChHHEEEeccCCCCC
Confidence 33566789999999998753
No 84
>PRK09027 cytidine deaminase; Provisional
Probab=24.76 E-value=3.1e+02 Score=20.64 Aligned_cols=83 Identities=10% Similarity=0.008 Sum_probs=45.8
Q ss_pred eeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHc-CCCeEEEeechHHHHHHHhcCCCCCCchHHHHH
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKA-GATSVILESDSKGVIELINNKRSTLTDTFWVIF 116 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~-g~~~v~iesDs~~vv~~i~~~~~~~~~~~~~i~ 116 (136)
.-.|+.++..+|++..+...........+-+|-.||..++.--.+. .+..+.+-.+. ....++. .
T Consensus 210 f~vGaAl~~~dG~i~~G~nvENAAynpslcaer~Al~~~v~~G~~~~~i~~i~lv~~~----------~~~ispc----g 275 (295)
T PRK09027 210 SYSGVALETKDGRIYTGRYAENAAFNPSLPPLQGALNLLNLSGEDFSDIQRAVLVEKA----------DAKLSQW----D 275 (295)
T ss_pred CceeEEEEeCCCCEEEEEEEEcCCCCCcccHHHHHHHHHHHcCCCccCEEEEEEEeCC----------CCCcCch----H
Confidence 3467777788898887765444344455667777776665211111 25666665554 1112232 3
Q ss_pred HHHHHhhcCCceEEEEEe
Q 046558 117 DIIEAKKIFQNFKAQHVL 134 (136)
Q Consensus 117 ~i~~l~~~~~~~~~~~v~ 134 (136)
.||..+..|....+.++.
T Consensus 276 ~cRq~L~ef~~~~~~~~~ 293 (295)
T PRK09027 276 ATQATLKALGCHELERVL 293 (295)
T ss_pred HHHHHHHHhCCCCcEEEe
Confidence 556666666555666553
No 85
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=24.57 E-value=2e+02 Score=21.28 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=39.5
Q ss_pred eEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 39 GLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 39 g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
-+++|+ | |.--.+..+.++. ....+|-+.+|.+=|++..++|++.|.++.=|
T Consensus 39 HVaFIM-D--GNRR~AKk~~L~~-~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFS 90 (271)
T KOG1602|consen 39 HVAFIM-D--GNRRYAKKRGLET-SEGHEAGFEALKEILELCKELGIKEVTVFAFS 90 (271)
T ss_pred eeEEEe-c--CchHHHHhcCCCc-ccchHHHHHHHHHHHHHHHHcCCcEEEEEEEe
Confidence 356665 3 4433455556665 68899999999999999999999999987644
No 86
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=24.56 E-value=68 Score=25.38 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=27.2
Q ss_pred echHHHHHHHhcCCCCCCchHHHHHHHHHHhhcC
Q 046558 92 SDSKGVIELINNKRSTLTDTFWVIFDIIEAKKIF 125 (136)
Q Consensus 92 sDs~~vv~~i~~~~~~~~~~~~~i~~i~~l~~~~ 125 (136)
+||+.|+.++++.......+..+++.|..++..+
T Consensus 414 sd~~sl~~~~~~~~~~~~~Y~~L~~~~~~~lD~y 447 (448)
T PF12458_consen 414 SDCLSLARLVNKEDPYAALYEDLIKACTRILDAY 447 (448)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHhhhhcc
Confidence 5899999999988766667888888888877543
No 87
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=24.41 E-value=3.3e+02 Score=20.96 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHHhcC
Q 046558 64 DVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINNK 104 (136)
Q Consensus 64 s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~ 104 (136)
+...|++..+..+.+....+|+.++.|+--...+++.+-..
T Consensus 132 ~~~~aDaEvi~l~~~~l~~lgl~~~~i~i~~~~i~~~il~~ 172 (391)
T PRK12292 132 AGLEADAEVILLLLEALKALGLPNFTLDLGHVGLFRALLEA 172 (391)
T ss_pred CCchHHHHHHHHHHHHHHHcCCCCeEEEeccHHHHHHHHHH
Confidence 34567777777788889999998888887777777766654
No 88
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=23.96 E-value=52 Score=12.02 Aligned_cols=7 Identities=43% Similarity=1.384 Sum_probs=4.2
Q ss_pred CCCCcCC
Q 046558 12 QSQWSPP 18 (136)
Q Consensus 12 ~~~W~~P 18 (136)
.+-|.||
T Consensus 2 kpfw~pp 8 (12)
T PF08248_consen 2 KPFWPPP 8 (12)
T ss_pred CccCCCC
Confidence 3457666
No 89
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=23.09 E-value=1.4e+02 Score=21.47 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcC-CCeEEEeechHHHHHHHhc
Q 046558 73 VLWGMQAAAKAG-ATSVILESDSKGVIELINN 103 (136)
Q Consensus 73 l~~aL~~a~~~g-~~~v~iesDs~~vv~~i~~ 103 (136)
+-+.++.|++.+ +.+|++-||+..+++.-+.
T Consensus 31 i~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ 62 (228)
T COG1083 31 IGYTIEAALNSKLFDKVVISSDSEEILEEAKK 62 (228)
T ss_pred HHHHHHHHhcCCccceEEEcCCcHHHHHHHHH
Confidence 346788888877 6999999999999987654
No 90
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=23.07 E-value=1.6e+02 Score=24.24 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=33.7
Q ss_pred CCcCCCCCcE-------EEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccC
Q 046558 14 QWSPPEEGWL-------KVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSG 63 (136)
Q Consensus 14 ~W~~P~~~~~-------k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~ 63 (136)
.|.++|.+.. .+.|.|++.+.++..=+=++-.|..|.+.+ .+.++....
T Consensus 57 ~Wa~~p~~~~~~s~~~~~V~F~ayyLPk~~~e~YqfcYv~~~g~V~G-~S~pFqf~~ 112 (546)
T PF07888_consen 57 VWAPVPENYVEGSAVNCQVQFQAYYLPKDDDEFYQFCYVDQKGEVRG-ASTPFQFRA 112 (546)
T ss_pred EeeccCccccCCCccceEEEECcccCCCCCCCeEEEEEECCCccEEE-ecCCcccCC
Confidence 6998775432 567889999876555567777799998655 445565543
No 91
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=22.81 E-value=2e+02 Score=21.44 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=32.4
Q ss_pred eeEeEEEecCCCcEEEeecccccc--cCCHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKS--SGDVELSEAKAVLWGMQAAAKAGATSVIL 90 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~--~~s~~~aE~~Al~~aL~~a~~~g~~~v~i 90 (136)
--+|.+++..+|++..+..-...+ .....-||-.|+..++.. -+..+..|.+
T Consensus 43 F~VGAall~~~G~iy~GvNvE~~nas~~~tiCAEr~Ai~~Av~~-Ge~~i~~Iav 96 (283)
T TIGR01355 43 FNVGAVGRGSSGRFYLGVNVEFPGLPLHHSIHAEQFLISHLALN-NERGLNDLAV 96 (283)
T ss_pred CeeeEEEEeCCCCEEEEEEeccCCCCCCccccHHHHHHHHHHHc-CCCceEEEEE
Confidence 347888888999988877643222 233578999998776532 1223444444
No 92
>cd00225 API3 Ascaris pepsin inhibitor-3 (API3); protein inhibitor that reversibly inhibits aspartic proteinase cathepsin E, and gastric enzymes pepsin and gastricsin.
Probab=22.68 E-value=2e+02 Score=19.30 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=20.6
Q ss_pred CCCCCCCCcCCCCCcEEEEeceeEecCCCeeeEeEEEec
Q 046558 8 NNVQQSQWSPPEEGWLKVNVDDAMDRVNYLAGLGAVVKN 46 (136)
Q Consensus 8 ~~~~~~~W~~P~~~~~k~n~Dgs~~~~~~~~g~G~vird 46 (136)
.+.+.+...-| .+....|+||....++..-.-|..+||
T Consensus 85 k~PkkPsFCt~-~DTtq~yFdGC~VqnNklYvg~~~~Rd 122 (159)
T cd00225 85 KAPKKPSFCSP-DDTTQFYFDGCMVQNNKVYVGNTYARD 122 (159)
T ss_pred CCCCCCCcCCC-CcceEEEEeeeEEECCEEEECCEEecc
Confidence 33444455555 567778888766654443333344443
No 93
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=22.03 E-value=2.3e+02 Score=20.76 Aligned_cols=52 Identities=12% Similarity=-0.008 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeechHHHHHHHhcCCCCCCchHHHHHHHHHHhhcCCceEE
Q 046558 69 EAKAVLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKA 130 (136)
Q Consensus 69 E~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~~~~~~~~~~~i~~i~~l~~~~~~~~~ 130 (136)
+.....+||+-+.+.|+++|++.+=- --+..++..+.+.+......|..+.+
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplh----------iipG~Ey~~l~~~v~~~~~~F~~i~~ 107 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLH----------IIPGEEYEKLRATVEAYKHDFKKIVL 107 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE------------SCSSHHHHHHHHHHHHHCCCSSEEEE
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecc----------eeCcHhHHHHHHHHHHhhccCCeEEe
Confidence 45778899999999999999996521 11224555566655555445555543
No 94
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=21.94 E-value=2.2e+02 Score=19.33 Aligned_cols=31 Identities=6% Similarity=0.308 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcC-CCeEEEeechHHHHHHHhc
Q 046558 73 VLWGMQAAAKAG-ATSVILESDSKGVIELINN 103 (136)
Q Consensus 73 l~~aL~~a~~~g-~~~v~iesDs~~vv~~i~~ 103 (136)
+.+.++.|.+.+ +.+|++-||+..+.+.+..
T Consensus 27 i~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~ 58 (217)
T PF02348_consen 27 IEYVIERAKQSKLIDEIVVATDDEEIDDIAEE 58 (217)
T ss_dssp HHHHHHHHHHTTTTSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHH
Confidence 556777777654 6999999999999988876
No 95
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=21.74 E-value=3.2e+02 Score=20.99 Aligned_cols=51 Identities=10% Similarity=-0.053 Sum_probs=29.6
Q ss_pred HHHHHHHHHHcCCCeEEEeechHHHHHHHhcCCCCCCchHHHHHHHHHHhhcCCceEEEEE
Q 046558 73 VLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHV 133 (136)
Q Consensus 73 l~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v 133 (136)
+..|.++|.+.+-++|.+- .+........+...+.++...+.|+++.+.+.
T Consensus 166 a~~AF~~A~~r~~k~Vt~v----------~KaNvl~~t~glf~~~~~eva~~ypdV~~~~~ 216 (344)
T PRK03437 166 VRDAFERAQKRPRKHLTLV----------HKTNVLTFAGDLWQRTVDEVAAEYPDVTVDYQ 216 (344)
T ss_pred HHHHHHHHHhCCCCeEEEE----------ECCccccccchHHHHHHHHHHhhCCCceEeeh
Confidence 5678999998877777772 22211111122233344455567888887764
No 96
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=21.72 E-value=1.2e+02 Score=18.37 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=17.3
Q ss_pred HHHHHHHHhhcCCceEEEEEe
Q 046558 114 VIFDIIEAKKIFQNFKAQHVL 134 (136)
Q Consensus 114 ~i~~i~~l~~~~~~~~~~~v~ 134 (136)
--.+|..|.+-|..+.+.||.
T Consensus 21 K~~DI~qlFspfG~I~VsWi~ 41 (87)
T PF08675_consen 21 KTSDIYQLFSPFGQIYVSWIN 41 (87)
T ss_dssp -HHHHHHHCCCCCCEEEEEEC
T ss_pred hhhhHHHHhccCCcEEEEEEc
Confidence 346788899999999999985
No 97
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.61 E-value=1.7e+02 Score=21.10 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=25.9
Q ss_pred CCcCCCCCcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccc
Q 046558 14 QWSPPEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKS 61 (136)
Q Consensus 14 ~W~~P~~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~ 61 (136)
-|++-+.+ ..+.++=..-...+..-+++.++++.|.++..-++...+
T Consensus 48 f~Q~v~~~-~tle~eyQVi~G~GDl~i~Ftl~~P~G~~lv~~q~k~dg 94 (236)
T KOG3287|consen 48 FYQPVPQG-ATLEVEYQVIDGAGDLDIDFTLLNPAGEVLVSDQRKVDG 94 (236)
T ss_pred eeeeccCC-eEEEEEEEEEecCCccceeeEEeCCCccEEeecccccCc
Confidence 46665555 334433333222222347788888888777666655544
No 98
>PRK10812 putative DNAse; Provisional
Probab=21.23 E-value=53 Score=23.91 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=15.1
Q ss_pred HHHHHcCCCeEEEeechHHH
Q 046558 78 QAAAKAGATSVILESDSKGV 97 (136)
Q Consensus 78 ~~a~~~g~~~v~iesDs~~v 97 (136)
+.+......++.+|||+..+
T Consensus 190 ~~~~~ipldrlLlETD~P~~ 209 (265)
T PRK10812 190 DAARYVPLDRLLVETDSPYL 209 (265)
T ss_pred HHHHhCChhhEEEecCCCCC
Confidence 34455667999999999754
No 99
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=21.15 E-value=1.6e+02 Score=22.40 Aligned_cols=23 Identities=22% Similarity=0.305 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEee
Q 046558 70 AKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 70 ~~Al~~aL~~a~~~g~~~v~ies 92 (136)
..+..+++......|++.|++||
T Consensus 129 S~at~~~i~~ldAaG~DvIIVET 151 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVET 151 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEe
Confidence 35666777777788999999997
No 100
>smart00340 HALZ homeobox associated leucin zipper.
Probab=20.87 E-value=31 Score=17.84 Aligned_cols=32 Identities=9% Similarity=-0.059 Sum_probs=20.5
Q ss_pred eechHHHHHHHhcCCCCCCchHHHHHHHHHHh
Q 046558 91 ESDSKGVIELINNKRSTLTDTFWVIFDIIEAK 122 (136)
Q Consensus 91 esDs~~vv~~i~~~~~~~~~~~~~i~~i~~l~ 122 (136)
|.||..+-....+-...+..+..-+.+++.+.
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67888888777665444445555666666553
No 101
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=20.86 E-value=79 Score=22.64 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=14.9
Q ss_pred HHHHHHHcCCCeEEEeechHHH
Q 046558 76 GMQAAAKAGATSVILESDSKGV 97 (136)
Q Consensus 76 aL~~a~~~g~~~v~iesDs~~v 97 (136)
+-+.+......++.+|||+..+
T Consensus 188 ~~~~~~~ip~drillETD~P~~ 209 (255)
T PF01026_consen 188 VRELIKAIPLDRILLETDAPYL 209 (255)
T ss_dssp HHHHHHHS-GGGEEEE-BTTSS
T ss_pred HHHHHhcCChhhEEEcCCCCcC
Confidence 3445577889999999998543
No 102
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=20.80 E-value=3.9e+02 Score=20.43 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCCeEEEeechHHHHHHHhcCCCCCCchHHHHHHHHHHhh-cCCceEEEEE
Q 046558 72 AVLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTDTFWVIFDIIEAKK-IFQNFKAQHV 133 (136)
Q Consensus 72 Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~~~~~~~~~~~i~~i~~l~~-~~~~~~~~~v 133 (136)
-+..|.++|.+.|-++|.+ +++..... ......+-++...+ .|+++.+.|.
T Consensus 165 i~r~AF~~A~~r~~k~Vt~----------v~KaNvl~-~~~lf~~~~~eva~~~yp~I~~~~~ 216 (348)
T PF00180_consen 165 IARFAFEYARKRGRKKVTV----------VHKANVLK-STDLFREVFQEVAKQEYPDIEVEHM 216 (348)
T ss_dssp HHHHHHHHHHHTTTSEEEE----------EESTTTST-THHHHHHHHHHHHHHTHTTSEEEEE
T ss_pred HHHHHHHHHHHhCCceEEE----------EeccchhH-HHHHHHHHHHHHHHhhcceeEeeee
Confidence 3567999999999999988 34332222 22244555555666 7888888875
No 103
>PRK10057 rpsV 30S ribosomal subunit S22; Reviewed
Probab=20.78 E-value=22 Score=18.15 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.2
Q ss_pred CCeEEEeechHHHHHHHh
Q 046558 85 ATSVILESDSKGVIELIN 102 (136)
Q Consensus 85 ~~~v~iesDs~~vv~~i~ 102 (136)
-++|++|.|...+|+--.
T Consensus 20 qrKvV~Egd~~t~vn~~t 37 (44)
T PRK10057 20 QRKVVTEGDKSSVVNNPT 37 (44)
T ss_pred ceeEEeeCCcceeEeccc
Confidence 489999999988887433
No 104
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=20.59 E-value=5.1e+02 Score=22.26 Aligned_cols=78 Identities=19% Similarity=0.115 Sum_probs=41.3
Q ss_pred CCCCcEEEEeceeEecCCCeee--EeEEEecCCCcEEEeec----ccccccCCHHHHHHHHHHHHHHHHHHc---CCCeE
Q 046558 18 PEEGWLKVNVDDAMDRVNYLAG--LGAVVKNHKGETVAAAV----STFKSSGDVELSEAKAVLWGMQAAAKA---GATSV 88 (136)
Q Consensus 18 P~~~~~k~n~Dgs~~~~~~~~g--~G~vird~~G~~~~~~~----~~~~~~~s~~~aE~~Al~~aL~~a~~~---g~~~v 88 (136)
.-...+-+|+|-++-.+...+| +++|.|...--++.+-- +.+.+.+....|+..+.+.+=-+++.- ..-+|
T Consensus 503 ~l~~~LyVYvDPAft~N~~ASGTGia~vg~~~~~~ii~GlEHffL~~Ltg~s~~~Ia~Ca~~~i~~v~~lHp~~~~~v~v 582 (738)
T PHA03368 503 ILSPDLYVYVDPAFTANTRASGTGIAVVGRYRDDWIVFGLEHFFLRALTGSSADEIARCVAQCLAQVCALHPGRFRSVRV 582 (738)
T ss_pred ccCceEEEEECcccccCCccccccEEEEEEeCCCEEEEecHHHHHHHhcCchHHHHHHHHHHHHHHHHHhCcccccEEEE
Confidence 3466899999999998876554 55666665433333221 112233334444444332222222222 23567
Q ss_pred EEeechH
Q 046558 89 ILESDSK 95 (136)
Q Consensus 89 ~iesDs~ 95 (136)
.+|+.|.
T Consensus 583 avEGNSs 589 (738)
T PHA03368 583 AVEGNSS 589 (738)
T ss_pred EEecCcc
Confidence 8888664
No 105
>TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase.
Probab=20.57 E-value=3e+02 Score=21.24 Aligned_cols=40 Identities=28% Similarity=0.218 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHHh
Q 046558 63 GDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELIN 102 (136)
Q Consensus 63 ~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~ 102 (136)
..+..+|..|+...+.+|...+.+=.+...-+..-++.+.
T Consensus 191 ~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i~ 230 (411)
T TIGR00857 191 ARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIV 230 (411)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHH
Confidence 3478999999999999999988766666666665555553
No 106
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=20.33 E-value=2.2e+02 Score=17.68 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=24.9
Q ss_pred CCcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeec
Q 046558 20 EGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAV 56 (136)
Q Consensus 20 ~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~ 56 (136)
...+++.++-.+...-....+|+.|++..|..+....
T Consensus 34 ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~ 70 (142)
T PF14524_consen 34 GEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTN 70 (142)
T ss_dssp TSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEE
T ss_pred CCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEEC
Confidence 4456677776665555567799999999998887644
No 107
>PF03481 SUA5: Putative GTP-binding controlling metal-binding; InterPro: IPR005145 The function of this domain is unknown, it is found in P32579 from SWISSPROT and its relatives. It is found C-terminal to the IPR006070 from INTERPRO.; PDB: 2EQA_A 3AJE_A 4E1B_A 2YV4_A.
Probab=20.27 E-value=2.2e+02 Score=17.95 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEee
Q 046558 65 VELSEAKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 65 ~~~aE~~Al~~aL~~a~~~g~~~v~ies 92 (136)
....=+..|..+|+.+-+.|++.|.+|.
T Consensus 79 d~~~~A~~Lf~~LR~~D~~~~~~I~ie~ 106 (125)
T PF03481_consen 79 DPEEAARNLFAALRELDELGVDLILIEG 106 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEee
Confidence 3334456699999999999999999984
No 108
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=20.24 E-value=2.1e+02 Score=20.53 Aligned_cols=48 Identities=13% Similarity=0.015 Sum_probs=34.9
Q ss_pred EecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 44 VKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 44 ird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
|-|-+|++.. ...++. .....+-+.++...++++.++|++.|.++.=|
T Consensus 6 ImDGNrRwAk--~~gl~~-~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFS 53 (226)
T TIGR00055 6 IMDGNGRWAK--KKGKPR-AYGHKAGVKSLRRILRWCANLGVECLTLYAFS 53 (226)
T ss_pred EcCCCHHHHH--HCCCCh-hHhHHHHHHHHHHHHHHHHHcCCCEEEEEEee
Confidence 3366666532 222332 45778889999999999999999999998654
Done!