Query 046558
Match_columns 136
No_of_seqs 172 out of 1121
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 23:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hst_B Protein RV2228C/MT2287; 99.9 3.2E-25 1.1E-29 145.4 13.3 114 22-136 3-118 (141)
2 3u3g_D Ribonuclease H, RNAse H 99.9 3.7E-25 1.3E-29 144.7 12.8 115 21-136 2-122 (140)
3 2ehg_A Ribonuclease HI; RNAse 99.9 4.4E-24 1.5E-28 141.4 13.0 113 22-136 1-119 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 99.9 8.9E-22 3.1E-26 131.1 13.1 115 17-135 2-131 (154)
5 1zbf_A Ribonuclease H-related 99.8 1.5E-20 5.2E-25 123.3 9.9 102 16-121 5-111 (142)
6 3qio_A GAG-POL polyprotein; RN 99.8 8.4E-20 2.9E-24 121.1 12.4 110 16-135 6-127 (150)
7 1ril_A Ribonuclease H; hydrola 99.8 2E-20 6.9E-25 126.0 7.5 113 16-134 2-127 (166)
8 3h08_A RNH (ribonuclease H); R 99.8 8.8E-19 3E-23 115.5 10.2 108 21-134 3-123 (146)
9 3p1g_A Xenotropic murine leuke 99.8 1.1E-17 3.9E-22 112.3 15.5 116 14-135 15-131 (165)
10 1jl1_A Ribonuclease HI; RNAse 99.8 1.5E-18 5.2E-23 115.6 9.9 107 22-134 4-122 (155)
11 2e4l_A Ribonuclease HI, RNAse 99.8 4.7E-18 1.6E-22 113.5 11.1 108 21-134 5-124 (158)
12 4htu_A Ribonuclease H, RNAse H 99.7 3.3E-17 1.1E-21 106.0 10.4 80 21-104 4-83 (134)
13 2lsn_A Reverse transcriptase; 99.7 2.2E-16 7.6E-21 106.0 14.3 112 21-134 6-136 (165)
14 2kq2_A Ribonuclease H-related 99.7 2.7E-18 9.1E-23 113.5 3.6 111 18-135 2-117 (147)
15 2zd1_A Reverse transcriptase/r 99.6 7.4E-15 2.5E-19 115.0 11.5 107 17-135 434-540 (557)
16 1mu2_A HIV-2 RT; HIV-2 reverse 99.6 1.6E-14 5.6E-19 113.0 12.3 107 17-135 431-537 (555)
17 1uwz_A Cytidine deaminase; CDD 91.9 0.29 1E-05 31.1 4.8 57 36-93 22-78 (136)
18 2zd1_B P51 RT; P51/P66, hetero 91.2 1.6 5.3E-05 33.0 8.8 79 20-103 322-405 (428)
19 2fr5_A Cytidine deaminase; tet 91.1 0.31 1.1E-05 31.4 4.2 56 37-93 35-90 (146)
20 2z3g_A Blasticidin-S deaminase 86.5 1.2 4E-05 28.1 4.4 55 36-93 25-79 (130)
21 2d30_A Cytidine deaminase; pur 83.6 1.6 5.4E-05 27.9 4.1 57 37-94 32-88 (141)
22 1r5t_A Cytidine deaminase; zin 82.8 2.8 9.6E-05 26.7 5.0 57 37-94 31-88 (142)
23 2b3j_A TRNA adenosine deaminas 81.5 1.8 6E-05 28.2 3.8 54 37-91 26-80 (159)
24 1rw3_A POL polyprotein; RNA an 81.2 0.71 2.4E-05 35.0 2.1 77 22-104 346-428 (455)
25 2a8n_A Cytidine and deoxycytid 80.2 1.5 5.3E-05 27.9 3.1 42 37-79 23-65 (144)
26 2nx8_A TRNA-specific adenosine 79.5 2.2 7.4E-05 28.4 3.8 42 37-79 35-77 (179)
27 1wwr_A TRNA adenosine deaminas 79.1 2.3 7.9E-05 28.0 3.8 56 36-92 41-97 (171)
28 3r2n_A Cytidine deaminase; str 75.5 3 0.0001 26.5 3.4 56 37-93 30-85 (138)
29 3mpz_A Cytidine deaminase; ssg 75.4 3.2 0.00011 26.8 3.5 56 37-93 45-100 (150)
30 3tue_A Tryparedoxin peroxidase 74.0 12 0.00042 25.5 6.5 51 32-84 140-190 (219)
31 2w4l_A DCMP deaminse, deoxycyt 72.6 3.2 0.00011 27.5 3.2 40 37-76 31-90 (178)
32 3dh1_A TRNA-specific adenosine 72.5 5.2 0.00018 26.8 4.2 41 38-79 46-87 (189)
33 1z3a_A TRNA-specific adenosine 72.5 3 0.0001 27.3 2.9 42 37-79 28-70 (168)
34 1wkq_A Guanine deaminase; doma 71.4 4.2 0.00015 26.5 3.5 40 39-79 33-73 (164)
35 3msh_A Hepatitis B virus X-int 70.8 14 0.00049 22.0 6.5 54 36-96 15-73 (99)
36 3sbc_A Peroxiredoxin TSA1; alp 70.7 16 0.00056 24.8 6.4 49 34-84 138-186 (216)
37 2g84_A Cytidine and deoxycytid 69.3 11 0.00037 25.3 5.2 41 39-79 49-91 (197)
38 3b8f_A Putative blasticidin S 69.3 5.4 0.00018 25.4 3.6 54 39-93 24-77 (142)
39 3oj6_A Blasticidin-S deaminase 69.2 14 0.00049 23.9 5.6 53 38-93 51-103 (158)
40 3dmo_A Cytidine deaminase; str 66.4 8.4 0.00029 24.4 4.0 57 37-94 31-89 (138)
41 1p6o_A Cytosine deaminase; hyd 66.2 4.3 0.00015 26.4 2.7 42 37-78 33-76 (161)
42 2zd1_A Reverse transcriptase/r 59.3 21 0.00072 27.7 5.8 75 22-101 326-405 (557)
43 1ctt_A Cytidine deaminase; hyd 51.9 16 0.00055 26.2 3.8 58 37-94 208-266 (294)
44 2hvw_A Deoxycytidylate deamina 48.0 34 0.0012 22.6 4.7 54 37-93 60-129 (184)
45 3gg7_A Uncharacterized metallo 48.0 6.4 0.00022 27.5 1.2 21 77-97 180-200 (254)
46 3r8n_K 30S ribosomal protein S 46.9 46 0.0016 20.3 4.8 50 42-92 20-74 (117)
47 2xzm_K RPS14E; ribosome, trans 45.8 57 0.002 20.9 5.8 50 42-92 42-97 (151)
48 1t23_A Chromosomal protein MC1 39.6 7.6 0.00026 22.7 0.4 20 42-61 6-25 (93)
49 3qb8_A A654L protein; GNAT N-a 38.8 60 0.002 20.1 4.8 34 71-104 127-160 (197)
50 3tjj_A Peroxiredoxin-4; thiore 36.3 79 0.0027 21.7 5.3 42 41-84 184-225 (254)
51 3qpm_A Peroxiredoxin; oxidored 35.2 86 0.0029 21.2 5.3 42 41-84 170-211 (240)
52 1xcc_A 1-Cys peroxiredoxin; un 34.7 88 0.003 20.8 5.3 43 41-85 130-172 (220)
53 4h8e_A Undecaprenyl pyrophosph 34.3 1E+02 0.0036 21.5 5.6 52 39-94 27-78 (256)
54 3ugs_B Undecaprenyl pyrophosph 34.2 84 0.0029 21.6 5.0 51 40-94 10-60 (225)
55 2vqe_K 30S ribosomal protein S 33.4 87 0.003 19.4 6.4 50 42-92 30-84 (129)
56 2d4p_A Hypothetical protein TT 32.9 41 0.0014 21.3 3.0 23 73-95 80-102 (141)
57 3a2v_A Probable peroxiredoxin; 31.3 1.1E+02 0.0038 21.0 5.4 42 41-84 126-167 (249)
58 1prx_A HORF6; peroxiredoxin, h 31.2 1.1E+02 0.0037 20.4 5.3 42 41-84 133-174 (224)
59 3j20_M 30S ribosomal protein S 31.0 1E+02 0.0034 19.4 6.3 50 42-92 28-83 (137)
60 4g84_A Histidine--tRNA ligase, 30.9 1.6E+02 0.0056 21.8 7.4 38 64-101 141-178 (464)
61 2v2g_A Peroxiredoxin 6; oxidor 30.9 1.1E+02 0.0038 20.6 5.3 42 41-84 129-170 (233)
62 2g3a_A Acetyltransferase; stru 30.5 86 0.0029 18.5 4.8 32 72-103 96-127 (152)
63 1vq2_A DCMP deaminase, deoxycy 30.1 46 0.0016 22.0 3.1 14 65-78 102-115 (193)
64 2hxv_A Diaminohydroxyphosphori 29.7 40 0.0014 24.6 3.0 34 39-76 37-70 (360)
65 3rcm_A TATD family hydrolase; 29.6 14 0.00048 26.2 0.5 20 78-97 194-213 (287)
66 1ctt_A Cytidine deaminase; hyd 28.8 60 0.0021 23.2 3.7 53 37-90 70-124 (294)
67 2b3z_A Riboflavin biosynthesis 27.8 50 0.0017 24.3 3.2 35 38-76 36-70 (373)
68 3ztl_A Thioredoxin peroxidase; 27.4 1.3E+02 0.0045 19.8 5.1 42 41-84 162-203 (222)
69 2g6v_A Riboflavin biosynthesis 26.1 51 0.0017 24.6 3.0 35 38-76 52-86 (402)
70 3bbn_K Ribosomal protein S11; 24.5 62 0.0021 20.5 2.8 50 42-92 43-97 (140)
71 3rac_A Histidine-tRNA ligase; 24.5 2.1E+02 0.0071 20.9 7.0 39 65-103 159-197 (373)
72 3flk_A Tartrate dehydrogenase/ 24.4 2.1E+02 0.0073 21.0 6.6 51 73-133 172-222 (364)
73 4g2e_A Peroxiredoxin; redox pr 24.2 1E+02 0.0036 18.9 4.0 35 42-77 122-156 (157)
74 3ipw_A Hydrolase TATD family p 24.2 25 0.00086 25.5 1.0 21 77-97 231-251 (325)
75 3ewt_E Tumor necrosis factor r 24.2 56 0.0019 14.2 3.0 21 65-85 5-25 (25)
76 3e2v_A 3'-5'-exonuclease; stru 24.0 1.2E+02 0.0041 22.7 4.7 19 77-95 287-305 (401)
77 3evs_C Bone morphogenetic prot 23.2 1.1E+02 0.0039 18.5 3.8 37 18-54 18-61 (119)
78 1uul_A Tryparedoxin peroxidase 23.1 1.5E+02 0.0053 18.9 5.3 42 41-84 129-170 (202)
79 3blx_B Isocitrate dehydrogenas 22.8 2.3E+02 0.0078 20.8 6.2 51 73-133 169-219 (354)
80 4eg2_A Cytidine deaminase; UMP 22.6 1.3E+02 0.0044 21.6 4.4 84 37-134 212-297 (298)
81 2dxq_A AGR_C_4057P, acetyltran 22.0 1.2E+02 0.0042 17.9 3.9 22 73-94 103-124 (150)
82 1t57_A Conserved protein MTH16 20.4 99 0.0034 20.9 3.2 23 73-95 40-62 (206)
83 4fd4_A Arylalkylamine N-acetyl 20.1 1.6E+02 0.0055 18.3 4.4 32 73-104 148-179 (217)
84 2ge3_A Probable acetyltransfer 20.0 1.2E+02 0.0039 18.3 3.5 23 72-94 106-128 (170)
No 1
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.93 E-value=3.2e-25 Score=145.39 Aligned_cols=114 Identities=21% Similarity=0.237 Sum_probs=101.0
Q ss_pred cEEEEeceeEecCCCeeeEeEEEecCC-CcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHH
Q 046558 22 WLKVNVDDAMDRVNYLAGLGAVVKNHK-GETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIEL 100 (136)
Q Consensus 22 ~~k~n~Dgs~~~~~~~~g~G~vird~~-G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~ 100 (136)
.+++|+|||+..+++.+|+|+++++.. |..+...+..++ ..|++.||++|++.||+++.++|.++|.|+|||+.+++.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~ 81 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQ 81 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHH
Confidence 489999999999999999999999987 666666665554 479999999999999999999999999999999999999
Q ss_pred HhcCCCC-CCchHHHHHHHHHHhhcCCceEEEEEeCC
Q 046558 101 INNKRST-LTDTFWVIFDIIEAKKIFQNFKAQHVLRM 136 (136)
Q Consensus 101 i~~~~~~-~~~~~~~i~~i~~l~~~~~~~~~~~v~Re 136 (136)
+++.+.. ...+..++.+|+.++..|..+.|.||||+
T Consensus 82 i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~ 118 (141)
T 3hst_B 82 MSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRA 118 (141)
T ss_dssp HTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGG
T ss_pred HhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCc
Confidence 9997644 34577889999999999999999999985
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.93 E-value=3.7e-25 Score=144.67 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=103.5
Q ss_pred CcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCC----eEEEeechHH
Q 046558 21 GWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGAT----SVILESDSKG 96 (136)
Q Consensus 21 ~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~----~v~iesDs~~ 96 (136)
..+++|+|||+..+++.+|+|+++++..|..+...+..++. .|++.||++|+++||+.|.+.+++ +|.|+|||+.
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~-~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGE-TTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEE-ECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCC-CchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 35899999999999999999999999999887766666655 699999999999999999999999 9999999999
Q ss_pred HHHHHhcCCCC-CCchHHHHHHHHHH-hhcCCceEEEEEeCC
Q 046558 97 VIELINNKRST-LTDTFWVIFDIIEA-KKIFQNFKAQHVLRM 136 (136)
Q Consensus 97 vv~~i~~~~~~-~~~~~~~i~~i~~l-~~~~~~~~~~~v~Re 136 (136)
+++.+++.+.. ...+..++.+|+.+ ++.|..++|.||||+
T Consensus 81 vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~ 122 (140)
T 3u3g_D 81 IVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPRE 122 (140)
T ss_dssp HHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGG
T ss_pred HHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCch
Confidence 99999997654 45678899999999 999999999999985
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.92 E-value=4.4e-24 Score=141.43 Aligned_cols=113 Identities=19% Similarity=0.120 Sum_probs=97.8
Q ss_pred cEEEEeceeEe-cCCCeeeE-eEEEecCCCcEEEeeccccc---ccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHH
Q 046558 22 WLKVNVDDAMD-RVNYLAGL-GAVVKNHKGETVAAAVSTFK---SSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKG 96 (136)
Q Consensus 22 ~~k~n~Dgs~~-~~~~~~g~-G~vird~~G~~~~~~~~~~~---~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~ 96 (136)
++++|+|||+. .+++.+|+ |+++++ .|..+.......+ ...|++.||++|++.||+.|.+.|+++|.|+|||+.
T Consensus 1 m~~iy~DGs~~~~n~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~ 79 (149)
T 2ehg_A 1 MIIGYFDGLCEPKNPGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQL 79 (149)
T ss_dssp CCEEEEEEEEESSSSSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHH
T ss_pred CEEEEEeeccCCCCCChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHH
Confidence 47999999999 78899996 999999 8887755443333 358999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC-CCchHHHHHHHHHHhhcCCceEEEEEeCC
Q 046558 97 VIELINNKRST-LTDTFWVIFDIIEAKKIFQNFKAQHVLRM 136 (136)
Q Consensus 97 vv~~i~~~~~~-~~~~~~~i~~i~~l~~~~~~~~~~~v~Re 136 (136)
+++.+++.+.. ...+..++++++.+++.| ++.|.||||+
T Consensus 80 vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~ 119 (149)
T 2ehg_A 80 VIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPRE 119 (149)
T ss_dssp HHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGG
T ss_pred HHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCc
Confidence 99999987543 346889999999999988 6999999984
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.88 E-value=8.9e-22 Score=131.07 Aligned_cols=115 Identities=14% Similarity=0.054 Sum_probs=94.1
Q ss_pred CCCCCcEEEEeceeEecCCC---eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 17 PPEEGWLKVNVDDAMDRVNY---LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 17 ~P~~~~~k~n~Dgs~~~~~~---~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
+|+.+.+++|+|||+..+++ .+|+|+++++..+..+. ..+....|++.||++|++.||+.+.+.+.++|.|+||
T Consensus 2 ~~~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~---~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tD 78 (154)
T 2qkb_A 2 SHMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVG---IRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTN 78 (154)
T ss_dssp CEETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEE---EECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CCCCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEE---eecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 57889999999999998765 48999999986554332 2344457999999999999999999999999999999
Q ss_pred hHHHHHHHhc--------CCC----CCCchHHHHHHHHHHhhcCCceEEEEEeC
Q 046558 94 SKGVIELINN--------KRS----TLTDTFWVIFDIIEAKKIFQNFKAQHVLR 135 (136)
Q Consensus 94 s~~vv~~i~~--------~~~----~~~~~~~~i~~i~~l~~~~~~~~~~~v~R 135 (136)
|+.+++.|++ .+. .+.....++++|..++..+ .+.|.||||
T Consensus 79 S~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~-~v~~~~V~~ 131 (154)
T 2qkb_A 79 SMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGM-DIQWMHVPG 131 (154)
T ss_dssp CHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTC-EEEEEECCT
T ss_pred cHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCC-ceEEEEccC
Confidence 9999999987 111 1235678999999998876 499999996
No 5
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.84 E-value=1.5e-20 Score=123.33 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=81.6
Q ss_pred cCCCCCcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechH
Q 046558 16 SPPEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSK 95 (136)
Q Consensus 16 ~~P~~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~ 95 (136)
.||+.+++++|+|||+..+++.+|+|+|++ ..|..+... ..++ ..|++.||++|++.||+.+.+.++ +|.|+|||+
T Consensus 5 ~~~~~~~~~iy~DGa~~gNpG~~G~G~vl~-~~g~~~~~~-~~~~-~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~ 80 (142)
T 1zbf_A 5 AKEEIIWESLSVDVGSQGNPGIVEYKGVDT-KTGEVLFER-EPIP-IGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQ 80 (142)
T ss_dssp ---CCCSSSEEEEEEECSSSEEEEEEEEET-TTCCEEEEC-CCEE-EECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCH
T ss_pred CCCCCCeEEEEEeeccCCCCCCeEEEEEEE-eCCEEEEEe-cccC-CcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehH
Confidence 578889999999999999999999999999 678776543 3344 379999999999999999999999 999999999
Q ss_pred HHHHHHhcCCC-----CCCchHHHHHHHHHH
Q 046558 96 GVIELINNKRS-----TLTDTFWVIFDIIEA 121 (136)
Q Consensus 96 ~vv~~i~~~~~-----~~~~~~~~i~~i~~l 121 (136)
+|++++++... .+.....+++.+..+
T Consensus 81 ~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~ 111 (142)
T 1zbf_A 81 TAIKWVKDKKAKSTLVRNEETALIWKLVDEA 111 (142)
T ss_dssp HHHHHHHHTCCCCCCCCSTTTHHHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCCCcccHHHHHHHHHH
Confidence 99999998752 123455566555544
No 6
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.83 E-value=8.4e-20 Score=121.06 Aligned_cols=110 Identities=21% Similarity=0.205 Sum_probs=88.7
Q ss_pred cCCCCCcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechH
Q 046558 16 SPPEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSK 95 (136)
Q Consensus 16 ~~P~~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~ 95 (136)
..|+.+.+++|+|||+.++++.+|+|+++++..+..+ .. ...|++.||++|++.||+.+ + .+|.|+|||+
T Consensus 6 ~~P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~-----~~-~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~ 75 (150)
T 3qio_A 6 KEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVV-----TL-TDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQ 75 (150)
T ss_dssp SSCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEE-----EE-SSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCH
T ss_pred cCCCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEE-----eC-CCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcH
Confidence 4688999999999999999999999999987554332 12 34799999999999999984 3 8999999999
Q ss_pred HHHHHHhcC------------CCCCCchHHHHHHHHHHhhcCCceEEEEEeC
Q 046558 96 GVIELINNK------------RSTLTDTFWVIFDIIEAKKIFQNFKAQHVLR 135 (136)
Q Consensus 96 ~vv~~i~~~------------~~~~~~~~~~i~~i~~l~~~~~~~~~~~v~R 135 (136)
++++.+++- ...+-....+++++..++..+..+.|.||++
T Consensus 76 ~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~g 127 (150)
T 3qio_A 76 YALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPA 127 (150)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCT
T ss_pred HHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccC
Confidence 999999862 1112345678888888777899999999987
No 7
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.82 E-value=2e-20 Score=125.98 Aligned_cols=113 Identities=17% Similarity=0.080 Sum_probs=87.7
Q ss_pred cCCCCCcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechH
Q 046558 16 SPPEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSK 95 (136)
Q Consensus 16 ~~P~~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~ 95 (136)
+|||.+.+++|+|||+..+++.+|+|+++++..+..... .... ..|++.||++|++.||+.+.+. .+|.|+|||+
T Consensus 2 ~p~~m~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~--~~~~-~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~ 76 (166)
T 1ril_A 2 NPSPRKRVALFTDGACLGNPGPGGWAALLRFHAHEKLLS--GGEA-CTTNNRMELKAAIEGLKALKEP--CEVDLYTDSH 76 (166)
T ss_dssp ----CCCCCEEEEEEESSTTEEEEEEEEECBTTBCCEEC--CEEE-EECHHHHHHHHHHHHHHSCCSC--CEEEEECCCH
T ss_pred CCCCCccEEEEECccccCCCCCEEEEEEEEECCEEEEEe--cCCC-CCcHHHHHHHHHHHHHHHhccC--CeEEEEeChH
Confidence 578889999999999999899999999999865543322 2233 4789999999999999988765 4999999999
Q ss_pred HHHHHHhcC---------CCC----CCchHHHHHHHHHHhhcCCceEEEEEe
Q 046558 96 GVIELINNK---------RST----LTDTFWVIFDIIEAKKIFQNFKAQHVL 134 (136)
Q Consensus 96 ~vv~~i~~~---------~~~----~~~~~~~i~~i~~l~~~~~~~~~~~v~ 134 (136)
++++.|++. +.. +.....+++++..++..+ .+.|.||+
T Consensus 77 ~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~ 127 (166)
T 1ril_A 77 YLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVK 127 (166)
T ss_dssp HHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCC
T ss_pred HHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcC-eEEEEEee
Confidence 999999882 221 223467899999888764 89999998
No 8
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.79 E-value=8.8e-19 Score=115.52 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=87.0
Q ss_pred CcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHH
Q 046558 21 GWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIEL 100 (136)
Q Consensus 21 ~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~ 100 (136)
..+++|+|||+..+++.+|+|+++++.... ...+...+ ..|++.||++|++.||+.+.+ ..+|.|+|||+++++.
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~--~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~ 77 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSR--KEISGYDP-ATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNA 77 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEE--EEEEEEEE-EECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCee--EEeecCCC-CCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHH
Confidence 358999999999999999999999985432 23333343 479999999999999999976 5899999999999999
Q ss_pred HhcCC-------------CCCCchHHHHHHHHHHhhcCCceEEEEEe
Q 046558 101 INNKR-------------STLTDTFWVIFDIIEAKKIFQNFKAQHVL 134 (136)
Q Consensus 101 i~~~~-------------~~~~~~~~~i~~i~~l~~~~~~~~~~~v~ 134 (136)
+++.+ ..+.....+++++..++..+ .+.|.||+
T Consensus 78 i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~-~v~~~~V~ 123 (146)
T 3h08_A 78 MNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLH-RVTFHKVK 123 (146)
T ss_dssp HHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHS-EEEEEECC
T ss_pred HHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhC-ceEEEEcC
Confidence 98721 12335678999999998876 59999998
No 9
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.79 E-value=1.1e-17 Score=112.33 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=90.7
Q ss_pred CCcCCCCCcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 14 QWSPPEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 14 ~W~~P~~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
...|.+...+++|+|||+.++++.+|+|+++.+ .|+.+... ......|++.||++|++.||+.+ ...+|.|+||
T Consensus 15 ~~~P~~~~~i~iytDGs~~~npG~~g~G~vi~~-~~~~~~~~--~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tD 88 (165)
T 3p1g_A 15 TDQPIPDADYTWYTDGSSFLQEGQRRAGAAVTT-ETEVIWAR--ALPAGTSAQRAELIALTQALKMA---EGKKLNVYTD 88 (165)
T ss_dssp BSSCCTTCSEEEEEEEEEEEETTEEEEEEEEEC-SSCEEEEE--EECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEEC
T ss_pred CCCCCCCCCEEEEEEcccCCCCCceEEEEEEEE-CCEEEEEe--cCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEc
Confidence 455555667999999999999999999999987 45554322 34445799999999999999998 3689999999
Q ss_pred hHHHHHHHhcCCC-CCCchHHHHHHHHHHhhcCCceEEEEEeC
Q 046558 94 SKGVIELINNKRS-TLTDTFWVIFDIIEAKKIFQNFKAQHVLR 135 (136)
Q Consensus 94 s~~vv~~i~~~~~-~~~~~~~~i~~i~~l~~~~~~~~~~~v~R 135 (136)
|+++++.+-.... .+-....+++++...+..+..+.|.||++
T Consensus 89 S~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkg 131 (165)
T 3p1g_A 89 SRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPG 131 (165)
T ss_dssp CHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCS
T ss_pred hHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecC
Confidence 9999998843222 23345677888877666788999999986
No 10
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.78 E-value=1.5e-18 Score=115.57 Aligned_cols=107 Identities=16% Similarity=0.094 Sum_probs=85.7
Q ss_pred cEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHH
Q 046558 22 WLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELI 101 (136)
Q Consensus 22 ~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i 101 (136)
.+++|+|||+.++++.+|+|+++++..+..... ...+ ..|++.||++|++.||+.+.+. .+|.|+|||+.+++.+
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~--~~~~-~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i 78 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFS--AGYT-RTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGI 78 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEE--EEEE-EECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEe--cCCC-CCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHH
Confidence 589999999999999999999999865443322 2233 3689999999999999998764 8999999999999999
Q ss_pred hc--------CCC----CCCchHHHHHHHHHHhhcCCceEEEEEe
Q 046558 102 NN--------KRS----TLTDTFWVIFDIIEAKKIFQNFKAQHVL 134 (136)
Q Consensus 102 ~~--------~~~----~~~~~~~~i~~i~~l~~~~~~~~~~~v~ 134 (136)
++ .+. .+.....+++++..+++. ..+.|.|||
T Consensus 79 ~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~ 122 (155)
T 1jl1_A 79 TQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ-HQIKWEWVK 122 (155)
T ss_dssp HTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTT-CEEEEEECC
T ss_pred HHHHHHHhhcccccccCCccCCHHHHHHHHHHHcc-CceEEEEcC
Confidence 97 221 123346788999888875 489999998
No 11
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.77 E-value=4.7e-18 Score=113.52 Aligned_cols=108 Identities=17% Similarity=0.093 Sum_probs=85.8
Q ss_pred CcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHH
Q 046558 21 GWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIEL 100 (136)
Q Consensus 21 ~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~ 100 (136)
..+++|+|||+.++++.+|+|+++++.. .. ...+...+ ..|++.||+.|++.||+.+.+. .+|.|+|||+.+++.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~-~~-~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~ 79 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKG-HT-KEMSDGFS-LTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQG 79 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETT-EE-EEEEEEEE-EECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECC-EE-EEEecCcC-CCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHH
Confidence 4689999999999999999999999843 22 22233333 3689999999999999998653 899999999999999
Q ss_pred Hhc--------CCCC----CCchHHHHHHHHHHhhcCCceEEEEEe
Q 046558 101 INN--------KRST----LTDTFWVIFDIIEAKKIFQNFKAQHVL 134 (136)
Q Consensus 101 i~~--------~~~~----~~~~~~~i~~i~~l~~~~~~~~~~~v~ 134 (136)
+++ .+.. +.....+++++..+++. ..+.|.|||
T Consensus 80 i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~ 124 (158)
T 2e4l_A 80 IMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL-HQIDWRWVK 124 (158)
T ss_dssp HHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT-SEEEEEECC
T ss_pred HHHHHHHHHHccccccCCCcccCHHHHHHHHHHHcc-CcEEEEEcc
Confidence 988 3321 23456788899888876 489999998
No 12
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.73 E-value=3.3e-17 Score=105.95 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=68.0
Q ss_pred CcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHH
Q 046558 21 GWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIEL 100 (136)
Q Consensus 21 ~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~ 100 (136)
....+|+|||+.++++.+|+|+|+++ .|..+... ..++ ..|++.||++|+++||+.+.+.+.+ |.|+|||++|+++
T Consensus 4 ~~~~iytDGac~GNPGp~G~ggV~~~-~g~~~~~~-g~~~-~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~w 79 (134)
T 4htu_A 4 IWESLSVDVGSQGNPGIVEYKGVDTK-TGEVLFER-EPIP-IGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKW 79 (134)
T ss_dssp CSSSEEEEEEEETTTEEEEEEEEETT-TCCEEEEE-EEEE-EECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHH
T ss_pred cceEEEEeeccCCCCCCeEEEEEEEE-CCEEEEEe-cCCC-CCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHH
Confidence 45679999999999999999888887 67655444 3344 4799999999999999999998876 8999999999999
Q ss_pred HhcC
Q 046558 101 INNK 104 (136)
Q Consensus 101 i~~~ 104 (136)
+++.
T Consensus 80 i~~~ 83 (134)
T 4htu_A 80 VKDK 83 (134)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9864
No 13
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.73 E-value=2.2e-16 Score=105.97 Aligned_cols=112 Identities=19% Similarity=0.081 Sum_probs=86.9
Q ss_pred CcEEEEeceeEecCCCe-----eeEeEEEecCCC--cEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 21 GWLKVNVDDAMDRVNYL-----AGLGAVVKNHKG--ETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 21 ~~~k~n~Dgs~~~~~~~-----~g~G~vird~~G--~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
.-+.+|||||+..+++. +|+|++++.... +......... ...+.+.||+.||..+|+.+.+.+. +|.|.||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~t-nn~te~~Aei~Al~~al~~al~~~~-~v~I~TD 83 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPL-GNHTAQMAEIAAVEFACKKALKIPG-PVLVITD 83 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEE-SSCCHHHHHHHHHHHHHHHHHHSSS-CEEEEES
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCc-hHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEeC
Confidence 35789999999998775 999999985433 3444333333 3468899999999999999988774 7999999
Q ss_pred hHHHHHHHhc--------CC----CCCCchHHHHHHHHHHhhcCCceEEEEEe
Q 046558 94 SKGVIELINN--------KR----STLTDTFWVIFDIIEAKKIFQNFKAQHVL 134 (136)
Q Consensus 94 s~~vv~~i~~--------~~----~~~~~~~~~i~~i~~l~~~~~~~~~~~v~ 134 (136)
|+++++.++. .+ ..+-....+++++..++..+.++.|.||+
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~Vk 136 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEK 136 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECC
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999999974 11 11234578999999998888999999997
No 14
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.72 E-value=2.7e-18 Score=113.46 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=80.3
Q ss_pred CCCCcEEEEeceeEecCCCeeeEeEEEecCCCcEEE-ee-cccccc--cCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 18 PEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVA-AA-VSTFKS--SGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 18 P~~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~-~~-~~~~~~--~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
.|.+.+++|+|||+.+ +.+|+|+++++ .|.... .. ....+. ..|++.||++|++.||++|.+.+. +|.|+||
T Consensus 2 ~~~~~i~iytDGs~~~--g~~G~G~vi~~-~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tD 77 (147)
T 2kq2_A 2 DDRTEYDVYTDGSYVN--GQYAWAYAFVK-DGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHD 77 (147)
T ss_dssp CTTSCCEEECCCCCBT--TBCEEEEEEEE-TTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSC
T ss_pred CCCCeEEEEECCCCCC--CCcEEEEEEEE-CCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEEC
Confidence 3567899999999987 89999999998 565322 22 111122 368999999999999999999999 9999999
Q ss_pred hHHHHHHHhcCCCCCCchHHHHHHHHHHhhcC-CceEEEEEeC
Q 046558 94 SKGVIELINNKRSTLTDTFWVIFDIIEAKKIF-QNFKAQHVLR 135 (136)
Q Consensus 94 s~~vv~~i~~~~~~~~~~~~~i~~i~~l~~~~-~~~~~~~v~R 135 (136)
|+.+++++++.+...... ....+.+.+.+ ..+.|.|||+
T Consensus 78 S~~i~~w~~~~w~~~~~~---~~~~~~l~~~l~~~v~~~wV~g 117 (147)
T 2kq2_A 78 YAGIAFWATGEWKAKNEF---TQAYAKLMNQYRGIYSFEKVKA 117 (147)
T ss_dssp CSTHHHHTTSSSSCCHHH---HHHHHCGGGGGSTTCCBCCCCC
T ss_pred cHHHHHHHhCCCccCCcc---hHHHHHHHHHhcCCeeEEEecC
Confidence 999999988865543321 12222233222 2788999874
No 15
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.60 E-value=7.4e-15 Score=115.00 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=85.8
Q ss_pred CCCCCcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHH
Q 046558 17 PPEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKG 96 (136)
Q Consensus 17 ~P~~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~ 96 (136)
.|..+.+++|+|||+..+++.+|+|+++.+.....+ .. ...|++.||+.|++.||+.+ ..+|.|.|||++
T Consensus 434 ep~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~-----~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~ 503 (557)
T 2zd1_A 434 EPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVV-----PL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQY 503 (557)
T ss_dssp SCCTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEE-----EE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHH
T ss_pred CCCCCCEEEEEccCCCCCCCceEEEEEEECCcEEEe-----cC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHH
Confidence 366788999999999999999999999974332222 12 24799999999999999998 689999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHhhcCCceEEEEEeC
Q 046558 97 VIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHVLR 135 (136)
Q Consensus 97 vv~~i~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v~R 135 (136)
+++.+++.... ....+++++...+..+..+.+.||+|
T Consensus 504 vi~~i~~~~~~--~~~~l~~~~~~~l~~~~~v~~~wV~~ 540 (557)
T 2zd1_A 504 ALGIIQAQPDK--SESELVNQIIEQLIKKEKVYLAWVPA 540 (557)
T ss_dssp HHHHHTTCCSE--ESSHHHHHHHHHHHHCSEEEEEECCS
T ss_pred HHHHHhcCCcc--CCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 99999984332 23456777776666778999999997
No 16
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.58 E-value=1.6e-14 Score=113.02 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=86.5
Q ss_pred CCCCCcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeechHH
Q 046558 17 PPEEGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDSKG 96 (136)
Q Consensus 17 ~P~~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~ 96 (136)
.|..+.+++|+|||+..+++.+|+|+++++..+. ..... ..|++.||++|++.||+. +..+|.|+|||++
T Consensus 431 ~p~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-----~~~~~-~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~ 500 (555)
T 1mu2_A 431 DPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-----VKKLE-QTTNQQAELEAFAMALTD----SGPKVNIIVDSQY 500 (555)
T ss_dssp SCCTTCEEEEEEEEECTTTCCEEEEEEETTSCEE-----EEEES-SCCHHHHHHHHHHHHHHT----SCSEEEEEESCHH
T ss_pred CCCCCceEEEEcccccCCCCCceEEEEEEeCCEe-----eccCC-CCCHHHHHHHHHHHHHHc----CCCeEEEEEehHH
Confidence 4567889999999999999999999999874432 11222 479999999999999998 7799999999999
Q ss_pred HHHHHhcCCCCCCchHHHHHHHHHHhhcCCceEEEEEeC
Q 046558 97 VIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHVLR 135 (136)
Q Consensus 97 vv~~i~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v~R 135 (136)
+++.+++- .. .....+++++..++..+..+.+.||++
T Consensus 501 v~~~i~~~-~~-~~~~~l~~~~~~~~~~~~~v~~~wV~~ 537 (555)
T 1mu2_A 501 VMGIVASQ-PT-ESESKIVNQIIEEMIKKEAIYVAWVPA 537 (555)
T ss_dssp HHHHHHTC-CS-EESCHHHHHHHHHHHHCSEEEEEECCS
T ss_pred HHHHHhcc-cc-cccHHHHHHHHHHhccCCcEEEEEEEC
Confidence 99999972 21 233457777777777789999999986
No 17
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=91.94 E-value=0.29 Score=31.14 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=41.3
Q ss_pred CeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 36 YLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 36 ~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
+...+|.++++.+|+++.+.........-...||..|+..|... -...+..+.+.+|
T Consensus 22 s~~~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~ 78 (136)
T 1uwz_A 22 SKFQVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAAD 78 (136)
T ss_dssp TCCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEES
T ss_pred CCCCEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeC
Confidence 34568999999999988655544333344688999999988865 4455788888876
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=91.18 E-value=1.6 Score=32.97 Aligned_cols=79 Identities=3% Similarity=-0.146 Sum_probs=50.2
Q ss_pred CCcEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHH-HHHHHHHHHH--cC--CCeEEEeech
Q 046558 20 EGWLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKA-VLWGMQAAAK--AG--ATSVILESDS 94 (136)
Q Consensus 20 ~~~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~A-l~~aL~~a~~--~g--~~~v~iesDs 94 (136)
..-+.+.+|+|- .+.+|+++....|....+..-.-.......+-|.+| +..||+.-.. .| ...+++.||.
T Consensus 322 ~~~~~l~~das~-----~g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~ 396 (428)
T 2zd1_B 322 SKDLIAEIQKQG-----QGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKE 396 (428)
T ss_dssp TSCCEEEEEEEE-----TTEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHH
T ss_pred CCCEEEEEecCC-----CCcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHH
Confidence 334789999973 236788887766654433332222334566778888 9999985432 34 3567889999
Q ss_pred HHHHHHHhc
Q 046558 95 KGVIELINN 103 (136)
Q Consensus 95 ~~vv~~i~~ 103 (136)
+.+..+.+.
T Consensus 397 ~~~~~~~~~ 405 (428)
T 2zd1_B 397 TWETWWTEY 405 (428)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 887655543
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=91.08 E-value=0.31 Score=31.44 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=40.8
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
...+|.++++.+|+++.+.........-...||..|+..|... -...+..+.+.+|
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~ 90 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSD 90 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEES
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeC
Confidence 4568999998899988755533333334688999999988864 4455788888877
No 20
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=86.51 E-value=1.2 Score=28.08 Aligned_cols=55 Identities=9% Similarity=-0.031 Sum_probs=39.4
Q ss_pred CeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 36 YLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 36 ~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
+...+|.++++.+|+++.+.... .......||-.|+..+... -...+..+.+.+|
T Consensus 25 s~f~VGAal~~~dG~i~~G~NvE--~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~ 79 (130)
T 2z3g_A 25 EDYSVASAALSSDGRIFTGVNVY--HFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGN 79 (130)
T ss_dssp SSSCEEEEEEETTSCEEEEECCC--CTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEET
T ss_pred CCCCEEEEEEecCCeEEEEeccc--cCCcccCHHHHHHHHHHHc-CCCceEEEEEEEC
Confidence 44568899998999988755433 3445788999999888763 2345677778776
No 21
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=83.65 E-value=1.6 Score=27.93 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=40.1
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
....|..+++.+|++..+..-........+-||-.|+..+... -...+..|.+.+|.
T Consensus 32 ~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~ 88 (141)
T 2d30_A 32 KFQVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADT 88 (141)
T ss_dssp CCCEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CCcEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCC
Confidence 4468889999999888766543333345688999999887753 23446788888763
No 22
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=82.81 E-value=2.8 Score=26.73 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=39.4
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC-CCeEEEeech
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG-ATSVILESDS 94 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g-~~~v~iesDs 94 (136)
....|..+++.+|++..+..-........+.||-.|+..+... -... +..+.+.+|.
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~-G~~~~i~~i~vv~~~ 88 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMA-GHRSGWKCMVICGDS 88 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCSCCCEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHc-CCCCceEEEEEEeCC
Confidence 4568899999999988766543333334678899998887753 2223 7788888763
No 23
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=81.47 E-value=1.8 Score=28.16 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=31.4
Q ss_pred eeeEeEEEecCCCcEEEeecccc-cccCCHHHHHHHHHHHHHHHHHHcCCCeEEEe
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTF-KSSGDVELSEAKAVLWGMQAAAKAGATSVILE 91 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~-~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~ie 91 (136)
..-+|.||.+ +|+++..+.... .......+||..||..+.+......+....++
T Consensus 26 ~~pVGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tly 80 (159)
T 2b3j_A 26 EVPIGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLY 80 (159)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEE
Confidence 4456777776 788885444322 11234578999999987664322233344444
No 24
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=81.25 E-value=0.71 Score=34.95 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=48.7
Q ss_pred cEEEEeceeEecCCCeeeEeEEEecCC--CcEEEeecccccc---cCCHHHHHHHHHHHHHHHHHH-cCCCeEEEeechH
Q 046558 22 WLKVNVDDAMDRVNYLAGLGAVVKNHK--GETVAAAVSTFKS---SGDVELSEAKAVLWGMQAAAK-AGATSVILESDSK 95 (136)
Q Consensus 22 ~~k~n~Dgs~~~~~~~~g~G~vird~~--G~~~~~~~~~~~~---~~s~~~aE~~Al~~aL~~a~~-~g~~~v~iesDs~ 95 (136)
-+.+++|||-.. +.|++..... +..+...++.+.. ..+..+.|+.|+..|++.... +.-.++.|.||++
T Consensus 346 ~~~l~~DAS~~~-----~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 346 PFELFVDEKQGY-----AKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp TTSCEEEEEECS-----SSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred cEEEEEeccCCc-----ceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 467889986431 1133333332 3444444444332 345678899999999988765 3337999999997
Q ss_pred HHHHHHhcC
Q 046558 96 GVIELINNK 104 (136)
Q Consensus 96 ~vv~~i~~~ 104 (136)
+...+++.
T Consensus 421 -~~~~l~~~ 428 (455)
T 1rw3_A 421 -VEALVKQP 428 (455)
T ss_dssp -TTTTSSST
T ss_pred -HHHHhCCC
Confidence 66666654
No 25
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=80.23 E-value=1.5 Score=27.87 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=27.5
Q ss_pred eeeEeEEEecCCCcEEEeecccc-cccCCHHHHHHHHHHHHHHH
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTF-KSSGDVELSEAKAVLWGMQA 79 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~-~~~~s~~~aE~~Al~~aL~~ 79 (136)
..-+|.+|.+ +|+++..+.... .......+||..|+..+.+.
T Consensus 23 ~~~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~ 65 (144)
T 2a8n_A 23 EVPIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEA 65 (144)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHH
Confidence 4456777777 788885444322 22233678999999988764
No 26
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=79.51 E-value=2.2 Score=28.36 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=27.4
Q ss_pred eeeEeEEEecCCCcEEEeecccc-cccCCHHHHHHHHHHHHHHH
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTF-KSSGDVELSEAKAVLWGMQA 79 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~-~~~~s~~~aE~~Al~~aL~~ 79 (136)
..-+|.||.+ +|+++..+.... .......+||..||..|-+.
T Consensus 35 ~~pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~ 77 (179)
T 2nx8_A 35 EIPIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAH 77 (179)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHH
Confidence 4456777776 788886544322 22233578999999988664
No 27
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=79.12 E-value=2.3 Score=28.02 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=34.3
Q ss_pred CeeeEeEEEecCCCcEEEeeccc-ccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEee
Q 046558 36 YLAGLGAVVKNHKGETVAAAVST-FKSSGDVELSEAKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 36 ~~~g~G~vird~~G~~~~~~~~~-~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~ies 92 (136)
+...+|.||.+ +|+++..+... ........+||..|+..|.+......+....+++
T Consensus 41 ~~~pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 41 GEVPVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp TSCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred CCCCEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 34557877777 78888544332 2222335789999998887653333455555554
No 28
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=75.46 E-value=3 Score=26.51 Aligned_cols=56 Identities=11% Similarity=-0.039 Sum_probs=37.8
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
....|..++..+|++..+...........+.||-.|+..|... -+..+..|.+-+|
T Consensus 30 ~f~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~-G~~~i~aiav~~~ 85 (138)
T 3r2n_A 30 NFPVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYAT-GGGRLVAVYCVDG 85 (138)
T ss_dssp CCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECT
T ss_pred CCcEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHc-CCCceEEEEEEcC
Confidence 3467888889999998776544333344678999999888653 1234566666654
No 29
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=75.44 E-value=3.2 Score=26.84 Aligned_cols=56 Identities=16% Similarity=-0.031 Sum_probs=39.0
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
...+|..++..+|++..+..-........+-||-.|+..|... -+..+..|.+-+|
T Consensus 45 ~F~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~i~aiavv~~ 100 (150)
T 3mpz_A 45 GFPVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSG-GGGRLVALSCVGP 100 (150)
T ss_dssp CCCCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEECT
T ss_pred CCCEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHc-CCCceEEEEEEcC
Confidence 4467888999999998776644443445678999999887753 2234666777655
No 30
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=74.00 E-value=12 Score=25.50 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=36.7
Q ss_pred ecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 32 DRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 32 ~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
....+.+.=|.+|.|.+|.+.......+. ...+..|++-++.|||++.+.|
T Consensus 140 ~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~--~gr~~~EvLr~l~aLQ~~~~~~ 190 (219)
T 3tue_A 140 EESQGVAYRGLFIIDPHGMLRQITVNDMP--VGRSVEEVLRLLEAFQFVEKHG 190 (219)
T ss_dssp ETTTTEECEEEEEECTTSBEEEEEEECTT--CCCCHHHHHHHHHHHHHHHHC-
T ss_pred ccCCCeeEEEEEEECCCCeEEEEEEecCC--CCCCHHHHHHHHHHhhhHHhcC
Confidence 33445555678899999988776544443 3456789999999999998776
No 31
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=72.63 E-value=3.2 Score=27.48 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=26.4
Q ss_pred eeeEeEEEecCCCcEEEeeccccc-cc-----------CC--------HHHHHHHHHHHH
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFK-SS-----------GD--------VELSEAKAVLWG 76 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~-~~-----------~s--------~~~aE~~Al~~a 76 (136)
..-+|.||.+.+|+++..+..... .+ .+ ..+||..||..+
T Consensus 31 ~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a 90 (178)
T 2w4l_A 31 NSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNK 90 (178)
T ss_dssp SCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC-
T ss_pred CCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHh
Confidence 456788888888998865543322 11 22 379999999875
No 32
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=72.50 E-value=5.2 Score=26.78 Aligned_cols=41 Identities=12% Similarity=0.119 Sum_probs=27.1
Q ss_pred eeEeEEEecCCCcEEEeeccccc-ccCCHHHHHHHHHHHHHHH
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFK-SSGDVELSEAKAVLWGMQA 79 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~-~~~s~~~aE~~Al~~aL~~ 79 (136)
.-+|+||.+ +|+++..+..... ...-..+||..||..+.+.
T Consensus 46 ~pVGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~ 87 (189)
T 3dh1_A 46 VPVGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDW 87 (189)
T ss_dssp CCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHH
Confidence 346777765 6888876554321 1234679999999988664
No 33
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=72.48 E-value=3 Score=27.35 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=26.6
Q ss_pred eeeEeEEEecCCCcEEEeeccc-ccccCCHHHHHHHHHHHHHHH
Q 046558 37 LAGLGAVVKNHKGETVAAAVST-FKSSGDVELSEAKAVLWGMQA 79 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~-~~~~~s~~~aE~~Al~~aL~~ 79 (136)
..-+|.||.+ +|+++..+... ........+||..||..|-+.
T Consensus 28 ~~pVGAviV~-~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~ 70 (168)
T 1z3a_A 28 EVPVGAVLVH-NNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLV 70 (168)
T ss_dssp SCCCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEEEE-CCEEEEEEEcccccCCCcchhHHHHHHHHHHHH
Confidence 3457777774 78888544432 222233578999999887654
No 34
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=71.35 E-value=4.2 Score=26.54 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=25.6
Q ss_pred eEeEEEecCCCcEEEeeccccc-ccCCHHHHHHHHHHHHHHH
Q 046558 39 GLGAVVKNHKGETVAAAVSTFK-SSGDVELSEAKAVLWGMQA 79 (136)
Q Consensus 39 g~G~vird~~G~~~~~~~~~~~-~~~s~~~aE~~Al~~aL~~ 79 (136)
-+|.||.+ +|+++..+..... ......+||..|+..+-+.
T Consensus 33 pVGAVIV~-~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~ 73 (164)
T 1wkq_A 33 PFGAVIVK-DGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKV 73 (164)
T ss_dssp SCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEEE-CCEEEEEEecCCcCCCCcccCHHHHHHHHHHHH
Confidence 36666664 7888865543322 2233678999999887664
No 35
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=70.84 E-value=14 Score=22.03 Aligned_cols=54 Identities=26% Similarity=0.231 Sum_probs=33.9
Q ss_pred CeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHc-----CCCeEEEeechHH
Q 046558 36 YLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKA-----GATSVILESDSKG 96 (136)
Q Consensus 36 ~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~-----g~~~v~iesDs~~ 96 (136)
+.+-.|+++.|.+|..+.+.-. .+...|-+...+ .+.|..+ ...-|.+|+|+..
T Consensus 15 ~pgvvGvlc~D~qGLcLg~~G~-----~s~~~AG~i~~l--a~~AakL~p~~~~~P~I~LEsDs~~ 73 (99)
T 3msh_A 15 NPSIVGVLCTDSQGLNLGCRGT-----LSDEHAGVISVL--AQQAAKLTSDPTDIPVVCLESDNGN 73 (99)
T ss_dssp STTEEEEEEECTTCCEEEEEET-----CCGGGHHHHHHH--HHHHHHTCCCSSCCCCEEEEETTEE
T ss_pred cCCcEEEEEECCCCCcccccCC-----CCcccchHHHHH--HHHHHhcCCCCCCCCEEEEEeCCce
Confidence 3456899999999988875432 334444443332 3445444 3458999999864
No 36
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=70.73 E-value=16 Score=24.83 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=36.3
Q ss_pred CCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 34 VNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 34 ~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
..+.+.=|.+|.|.+|.+......... ...+..|++-++.|||+..+.|
T Consensus 138 ~~g~~~R~tFiID~~G~Ir~~~v~~~~--~grn~dEiLr~l~AlQ~~~~~~ 186 (216)
T 3sbc_A 138 EEGVALRGLFIIDPKGVIRHITINDLP--VGRNVDEALRLVEAFQWTDKNG 186 (216)
T ss_dssp TTTEECEEEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHC
T ss_pred cCCceeeEEEEECCCCeEEEEEEcCCC--CCCCHHHHHHHHHHhhhHhhcC
Confidence 344555678899999988766544443 2457789999999999998776
No 37
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=69.32 E-value=11 Score=25.31 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=28.4
Q ss_pred eEeEEEecCC-CcEEEeeccccc-ccCCHHHHHHHHHHHHHHH
Q 046558 39 GLGAVVKNHK-GETVAAAVSTFK-SSGDVELSEAKAVLWGMQA 79 (136)
Q Consensus 39 g~G~vird~~-G~~~~~~~~~~~-~~~s~~~aE~~Al~~aL~~ 79 (136)
-+|.||.+.+ |+++..+..... ...-..+||..||..|-+.
T Consensus 49 PvGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~ 91 (197)
T 2g84_A 49 PFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAK 91 (197)
T ss_dssp SCEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHH
Confidence 3588888766 998876654332 2244679999999987654
No 38
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=69.31 E-value=5.4 Score=25.35 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=36.3
Q ss_pred eEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 39 GLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 39 g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
.+|..++..+|+++.+...........+.||-.|+..+... -...+..+.+.+|
T Consensus 24 ~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~-G~~~~~~~~v~~~ 77 (142)
T 3b8f_A 24 GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKF-QKKVTHSICLARE 77 (142)
T ss_dssp EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHH-TCCEEEEEEEEES
T ss_pred CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHC-CCCcEEEEEEEec
Confidence 78888999999988765544433345788999999888763 1122355566554
No 39
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=69.22 E-value=14 Score=23.94 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=34.7
Q ss_pred eeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
...|..++..+|++..+..- +..+..+-||-.|+..|+.. -...+..+.+-++
T Consensus 51 f~VGAAll~~dG~i~tG~NV--En~~~~lCAEr~Ai~~Avs~-G~~~~~ai~vv~~ 103 (158)
T 3oj6_A 51 YSVASAAISDDGRVFSGVNV--YHFNGGPCAELVVLGVAAAA-GATKLTHIVAIAN 103 (158)
T ss_dssp SCEEEEEEETTSCEEEEECC--CCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEET
T ss_pred CcEEEEEEeCCCCEEEEEcc--ccCCccccHHHHHHHHHHHh-CCCceEEEEEEeC
Confidence 46889999999998877654 33455677888888777631 1123455556555
No 40
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=66.43 E-value=8.4 Score=24.45 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=39.4
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHc--CCCeEEEeech
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKA--GATSVILESDS 94 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~--g~~~v~iesDs 94 (136)
....|..++..+|++..+..-........+-||-.|+..+... -.. .+..|.+-+|.
T Consensus 31 ~F~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~-G~~~~~i~aiavv~~~ 89 (138)
T 3dmo_A 31 NFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAA-GYRPGEFAAIAVVGET 89 (138)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCTTCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHc-CCCcccEEEEEEEcCC
Confidence 4468888999999998877654444445678999998887642 122 46677787763
No 41
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=66.20 E-value=4.3 Score=26.35 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=28.1
Q ss_pred eeeEeEEEe-cCCCcEEEeeccccc-ccCCHHHHHHHHHHHHHH
Q 046558 37 LAGLGAVVK-NHKGETVAAAVSTFK-SSGDVELSEAKAVLWGMQ 78 (136)
Q Consensus 37 ~~g~G~vir-d~~G~~~~~~~~~~~-~~~s~~~aE~~Al~~aL~ 78 (136)
..-+|.||. +.+|+++..+..... ......+||..|+..+.+
T Consensus 33 ~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~ 76 (161)
T 1p6o_A 33 GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGR 76 (161)
T ss_dssp SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCS
T ss_pred CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHH
Confidence 345888888 478998865543322 122357899999988754
No 42
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=59.35 E-value=21 Score=27.68 Aligned_cols=75 Identities=4% Similarity=-0.124 Sum_probs=42.1
Q ss_pred cEEEEeceeEecCCCeeeEeEEEecCCCcEEEeecccccccCCHHHHHHHH-HHHHHHHHHH--cCC-CeEEE-eechHH
Q 046558 22 WLKVNVDDAMDRVNYLAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKA-VLWGMQAAAK--AGA-TSVIL-ESDSKG 96 (136)
Q Consensus 22 ~~k~n~Dgs~~~~~~~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~A-l~~aL~~a~~--~g~-~~v~i-esDs~~ 96 (136)
-+.+.+|+|- .+.+|+++....+.........-.......+-|++| +..+|+.-.- .|- .++++ .+|.+.
T Consensus 326 ~~~l~~das~-----~g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p~~~vp~~~~~~ 400 (557)
T 2zd1_A 326 DLIAEIQKQG-----QGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 400 (557)
T ss_dssp CCEEEEEEEE-----TTEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCCEEEESBCHHHH
T ss_pred CEEEEEecCC-----CCcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCCCCCEECCCcHHHH
Confidence 3788999863 234677776655533322211122224556678888 8888775322 343 24555 688776
Q ss_pred HHHHH
Q 046558 97 VIELI 101 (136)
Q Consensus 97 vv~~i 101 (136)
+....
T Consensus 401 ~~~~~ 405 (557)
T 2zd1_A 401 ETWWT 405 (557)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 55443
No 43
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=51.89 E-value=16 Score=26.22 Aligned_cols=58 Identities=7% Similarity=0.011 Sum_probs=40.8
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHH-HcCCCeEEEeech
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAA-KAGATSVILESDS 94 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~-~~g~~~v~iesDs 94 (136)
....|..++..+|++..+..-........+-||-.|+..+...=. ...+..+.+.+|.
T Consensus 208 ~f~VGAAl~~~dG~i~tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~ 266 (294)
T 1ctt_A 208 KSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKA 266 (294)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT
T ss_pred CCceEEEEEeCCCCEEEEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecC
Confidence 556889999999988877665444455678889998888775210 1236788887774
No 44
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=48.00 E-value=34 Score=22.64 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=31.2
Q ss_pred eeeEeEEEecCCCcEEEeecccccc----------------cCCHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKS----------------SGDVELSEAKAVLWGMQAAAKAGATSVILESD 93 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~----------------~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesD 93 (136)
..-+|.||.+ +|+++..+...... ..-..+||..||..+.+. ...+....+++.
T Consensus 60 ~~~VGAVIV~-dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~--g~~l~g~tlYvT 129 (184)
T 2hvw_A 60 RAYVGAVLVK-NNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKE--GISANNTEIYVT 129 (184)
T ss_dssp TCCCEEEEEE-TTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHH--TCCCTTEEEEEE
T ss_pred CCCEEEEEEE-CCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHc--CCCceeEEEEEC
Confidence 3456777765 78888544433221 122578999999887542 123455555554
No 45
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0
Probab=47.99 E-value=6.4 Score=27.50 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=17.1
Q ss_pred HHHHHHcCCCeEEEeechHHH
Q 046558 77 MQAAAKAGATSVILESDSKGV 97 (136)
Q Consensus 77 L~~a~~~g~~~v~iesDs~~v 97 (136)
.+.+......++.+|||+..+
T Consensus 180 ~~~v~~ip~drlLlETD~P~~ 200 (254)
T 3gg7_A 180 AALIRSMPRDRVLTETDGPFL 200 (254)
T ss_dssp HHHHHHSCGGGEEECCCTTTS
T ss_pred HHHHHHcCCCeEEEeCCCCcc
Confidence 456667889999999999863
No 46
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=46.88 E-value=46 Score=20.33 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=31.9
Q ss_pred EEEecCCCcEEEeecc-ccc----ccCCHHHHHHHHHHHHHHHHHHcCCCeEEEee
Q 046558 42 AVVKNHKGETVAAAVS-TFK----SSGDVELSEAKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 42 ~vird~~G~~~~~~~~-~~~----~~~s~~~aE~~Al~~aL~~a~~~g~~~v~ies 92 (136)
+-+.|..|..+...+. .++ .-.++..|.. |...+.+.+.++|++.|.+..
T Consensus 20 vtiTD~~G~~i~~~S~G~~gfKg~rk~tp~AA~~-aa~~~~~~~~~~Gi~~v~v~v 74 (117)
T 3r8n_K 20 VTITDRQGNALGWATAGGSGFRGSRKSTPFAAQV-AAERCADAVKEYGIKNLEVMV 74 (117)
T ss_dssp EEEECTTSCCSEEEETGGGSCCGGGGSSHHHHHH-HHHHHHHHHTTSCCCEEEEEE
T ss_pred EEEEcCCCCEEEEEcCCccccCCCccCCHHHHHH-HHHHHHHHHHHhCCcEEEEEE
Confidence 4566778876554331 111 1245555544 556677888999999999976
No 47
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=45.85 E-value=57 Score=20.93 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=31.5
Q ss_pred EEEecCCCc-EEEeecccccc-----cCCHHHHHHHHHHHHHHHHHHcCCCeEEEee
Q 046558 42 AVVKNHKGE-TVAAAVSTFKS-----SGDVELSEAKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 42 ~vird~~G~-~~~~~~~~~~~-----~~s~~~aE~~Al~~aL~~a~~~g~~~v~ies 92 (136)
+-|.|..|. .+...+..... -.|+..| .+|...+.+.|.++|++.|.|..
T Consensus 42 VtiTD~~G~~~~~~ssgg~~~k~~r~ksTpyAA-q~aa~~~a~~a~e~Gi~~v~V~v 97 (151)
T 2xzm_K 42 IHVTDLSGRETLVRVTGGMKVKADREESSPYAA-MQAAIDVVNRCKELKINALHIKL 97 (151)
T ss_dssp CEEECTTCCSEEEECCHHHHCSSGGGGSCHHHH-HHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EEEECCCCCEEEEEecCcceEeCCCCcCCHHHH-HHHHHHHHHHHHHcCCeEEEEEE
Confidence 456788886 44443332221 2445555 44556778888999999999865
No 48
>1t23_A Chromosomal protein MC1; alpha/beta barrel, DNA binding protein; NMR {Methanosarcina thermophila} SCOP: d.247.1.1 PDB: 2khl_A
Probab=39.56 E-value=7.6 Score=22.68 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=16.0
Q ss_pred EEEecCCCcEEEeecccccc
Q 046558 42 AVVKNHKGETVAAAVSTFKS 61 (136)
Q Consensus 42 ~vird~~G~~~~~~~~~~~~ 61 (136)
+++||.+|.-+..+++..+.
T Consensus 6 F~Lr~~~G~E~gvFtG~~Pr 25 (93)
T 1t23_A 6 FVLRDEDGNEHGVFTGKQPR 25 (93)
T ss_dssp EEECTTTTSCCEEEEESSTT
T ss_pred EEEEcCCCcccceEcCCChH
Confidence 78999999988888775554
No 49
>3qb8_A A654L protein; GNAT N-acetyltransferase, acetyltransferase, COA, spermine, spermidine, transferase; HET: COA; 1.50A {Paramecium bursaria chlorella virus 1}
Probab=38.85 E-value=60 Score=20.10 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCCCeEEEeechHHHHHHHhcC
Q 046558 71 KAVLWGMQAAAKAGATSVILESDSKGVIELINNK 104 (136)
Q Consensus 71 ~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~ 104 (136)
..+..+++.|.+.|+..+.+++++....+...+.
T Consensus 127 ~Ll~~~~~~a~~~g~~~i~l~~~n~~a~~~y~k~ 160 (197)
T 3qb8_A 127 KLLKKTIEESSSHGFKYIYGDCTNIISQNMFEKH 160 (197)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHC
Confidence 3456678889999999999999888877776653
No 50
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=36.33 E-value=79 Score=21.68 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=31.1
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
+.+|-|.+|.+......... ......|++.++.+|+...+.+
T Consensus 184 ~tflID~~G~I~~~~~~~~~--~~~~~~eil~~L~alq~~~~~~ 225 (254)
T 3tjj_A 184 GLFIIDDKGILRQITLNDLP--VGRSVDETLRLVQAFQYTDKHG 225 (254)
T ss_dssp EEEEECTTSBEEEEEEECTT--CCCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEEECCCCeEEEEEecCCC--CCCCHHHHHHHHHhhccccccC
Confidence 57888999999877654333 2345678999999999887765
No 51
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=35.24 E-value=86 Score=21.17 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=30.7
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
+.+|-|.+|.+......... ......|++.++.+|+...+.|
T Consensus 170 ~~flID~~G~I~~~~~~~~~--~~~~~~eil~~l~~lq~~~~~~ 211 (240)
T 3qpm_A 170 GLFIIDEKGVLRQITMNDLP--VGRSVDETLRLVQAFQYTDKHG 211 (240)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHS
T ss_pred eEEEEcCCCeEEEEEecCCC--CCCCHHHHHHHHHHhhhhhhcC
Confidence 56788999999877654333 2334678999999999887665
No 52
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=34.74 E-value=88 Score=20.79 Aligned_cols=43 Identities=12% Similarity=0.003 Sum_probs=31.6
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGA 85 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~ 85 (136)
+.+|-|.+|.+.......... .....|++..+.+|+...+.|.
T Consensus 130 ~~flID~~G~I~~~~~~~~~~--g~~~~ell~~i~~lq~~~~~~~ 172 (220)
T 1xcc_A 130 CLFFISPEKKIKATVLYPATT--GRNAHEILRVLKSLQLTYTTPV 172 (220)
T ss_dssp EEEEECTTSBEEEEEEECTTB--CCCHHHHHHHHHHHHHHHHSSE
T ss_pred eEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHHHhhhcCCc
Confidence 677889999988876544321 2356789999999998877653
No 53
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=34.26 E-value=1e+02 Score=21.54 Aligned_cols=52 Identities=10% Similarity=0.041 Sum_probs=38.0
Q ss_pred eEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 39 GLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 39 g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
-+|+|. |-+|++.. ...++. .....+-+.++...++++.++|++.|.++.-|
T Consensus 27 HVAiIM-DGN~RwAk--~rgl~r-~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFS 78 (256)
T 4h8e_A 27 HIAIIM-DGNGRWAK--KRKMPR-IKGHYEGMQTIKKITRIASDIGVKYLTLYAFS 78 (256)
T ss_dssp EEEEEC-CCHHHHHH--HTTCCH-HHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred EEEEEc-CCCHHHHH--HCCCCH-HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 455555 66665532 222332 35677888999999999999999999999887
No 54
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=34.18 E-value=84 Score=21.57 Aligned_cols=51 Identities=16% Similarity=0.027 Sum_probs=30.5
Q ss_pred EeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcCCCeEEEeech
Q 046558 40 LGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 40 ~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs 94 (136)
+|+|. |-+|++.... .++. .....+-+.++.+.++++.++|++.|.++.=|
T Consensus 10 VAiIM-DGNrRwAk~r--gl~r-~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFS 60 (225)
T 3ugs_B 10 LAVVM-DGNRRWARAK--GFLA-KLGYSQGVKTMQKLMEVCMEENISNLSLFAFS 60 (225)
T ss_dssp EEEEE-CCCC-----------------CHHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEec-cCcHHHHHHC--CCCH-HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 45544 7788775432 2333 46777889999999999999999999987543
No 55
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=33.43 E-value=87 Score=19.44 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=31.5
Q ss_pred EEEecCCCcEEEeeccc-cc----ccCCHHHHHHHHHHHHHHHHHHcCCCeEEEee
Q 046558 42 AVVKNHKGETVAAAVST-FK----SSGDVELSEAKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 42 ~vird~~G~~~~~~~~~-~~----~~~s~~~aE~~Al~~aL~~a~~~g~~~v~ies 92 (136)
+-+.|..|..+...+.- ++ .-.++..| .+|...+.+.+.++|++.|.+..
T Consensus 30 vtiTd~~G~~~~~~SaG~~gfKg~rk~tp~AA-~~aa~~~~~~~~~~Gi~~v~V~v 84 (129)
T 2vqe_K 30 VTITDPDGNPITWSSGGVIGYKGSRKGTPYAA-QLAALDAAKKAMAYGMQSVDVIV 84 (129)
T ss_dssp EEEECTTSCEEEECCTTTTTCCSGGGGSHHHH-HHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEEEcCCCCEEEEEeccceeEcCCCcCCHHHH-HHHHHHHHHHHHHhCCeEEEEEE
Confidence 56778888877655432 21 12233333 34445677788899999999876
No 56
>2d4p_A Hypothetical protein TTHA1254; structural genomics, NPPSFA, national project on protein STR and functional analyses; 1.70A {Thermus thermophilus} SCOP: d.108.1.1 PDB: 2d4o_A
Probab=32.85 E-value=41 Score=21.30 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCCeEEEeechH
Q 046558 73 VLWGMQAAAKAGATSVILESDSK 95 (136)
Q Consensus 73 l~~aL~~a~~~g~~~v~iesDs~ 95 (136)
+..++++|.+.|+.+|.+.+|..
T Consensus 80 l~~a~~~a~~~G~~rv~L~~~~~ 102 (141)
T 2d4p_A 80 LRAVVKSAYDAGVYEVALHLDPE 102 (141)
T ss_dssp HHHHHHHHHHTTCSEEEECCCTT
T ss_pred HHHHHHHHHHCCCCEEEEEeccc
Confidence 44578899999999999977754
No 57
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=31.33 E-value=1.1e+02 Score=21.01 Aligned_cols=42 Identities=7% Similarity=0.076 Sum_probs=30.4
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
+.+|-|.+|.+......... ...+..|+..++.+|+...+.|
T Consensus 126 ~~fIID~dG~I~~~~~~~~~--~gr~~~Ellr~I~alq~~~~~~ 167 (249)
T 3a2v_A 126 GVFIVDARGVIRTMLYYPME--LGRLVDEILRIVKALKLGDSLK 167 (249)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCeEEEEEecCCc--ccchhHHHHHHHHHHHhccccC
Confidence 57788999998876654332 1235689999999999876654
No 58
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=31.23 E-value=1.1e+02 Score=20.40 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=30.6
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
+.+|-|.+|.+.......... .....|++..+.+|+...+.+
T Consensus 133 ~~fiID~~G~I~~~~~~~~~~--gr~~~eil~~i~~l~~~~~~~ 174 (224)
T 1prx_A 133 VVFVFGPDKKLKLSILYPATT--GRNFDEILRVVISLQLTAEKR 174 (224)
T ss_dssp EEEEECTTSBEEEEEECCTTB--CCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHHHhhccCC
Confidence 577889999988876544321 224679999999999876654
No 59
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.04 E-value=1e+02 Score=19.42 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=31.8
Q ss_pred EEEecCCCc-EEEeeccccc-----ccCCHHHHHHHHHHHHHHHHHHcCCCeEEEee
Q 046558 42 AVVKNHKGE-TVAAAVSTFK-----SSGDVELSEAKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 42 ~vird~~G~-~~~~~~~~~~-----~~~s~~~aE~~Al~~aL~~a~~~g~~~v~ies 92 (136)
+-|.|..|. .+...+.-.. .-.++..|...| ..+.+.|.++|++.|.|..
T Consensus 28 vtiTD~~G~~~i~~~S~G~~gfkg~~ksTp~AA~~aa-~~~~~~a~e~Gi~~v~V~v 83 (137)
T 3j20_M 28 IHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAA-RRAAEEALEKGIVGVHIRV 83 (137)
T ss_dssp EEEEESSSCSEEEEEEGGGTCSCTTTSSSHHHHHHHH-HHHHHHHHHHTEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEccceeeecCCccCCHHHHHHHH-HHHHHHHHHcCCeEEEEEE
Confidence 557788884 6654333211 124555555444 6778889999999999854
No 60
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=30.90 E-value=1.6e+02 Score=21.80 Aligned_cols=38 Identities=5% Similarity=0.157 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHH
Q 046558 64 DVELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELI 101 (136)
Q Consensus 64 s~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i 101 (136)
++..+|+..+..+.+....+|+..+.++.-+..+.+.+
T Consensus 141 ~~~~aDaEvi~l~~~~l~~lgl~~~~i~i~~~~~~~~~ 178 (464)
T 4g84_A 141 DPMIPDAECLKIMCEILSSLQIGDFLVKVNDRRILDGM 178 (464)
T ss_dssp STTHHHHHHHHHHHHHHHHHTCCCEEEEEEEHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhCCCCcceeecchhhHHHH
Confidence 45555666666778888899998888877665555444
No 61
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=30.87 E-value=1.1e+02 Score=20.64 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=30.5
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
+.+|-|.+|.+.......... .....|++..+.+|+...+.+
T Consensus 129 ~~fiID~~G~I~~~~~~~~~~--gr~~~eilr~l~~Lq~~~~~~ 170 (233)
T 2v2g_A 129 AVFIIGPDKKLKLSILYPATT--GRNFSEILRVIDSLQLTAQKK 170 (233)
T ss_dssp EEEEECTTSBEEEEEEECTTB--CCCHHHHHHHHHHHHHHHHSS
T ss_pred eEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHHHhhccCC
Confidence 577889999988776543321 224679999999999886654
No 62
>2g3a_A Acetyltransferase; structural genomics, PSI, protein structu initiative, midwest center for structural genomics, MCSG; 1.90A {Agrobacterium tumefaciens str} SCOP: d.108.1.1
Probab=30.51 E-value=86 Score=18.47 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCCeEEEeechHHHHHHHhc
Q 046558 72 AVLWGMQAAAKAGATSVILESDSKGVIELINN 103 (136)
Q Consensus 72 Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~ 103 (136)
.+..+++.+.+.|+..+.+++++........+
T Consensus 96 ll~~~~~~~~~~g~~~i~l~~~n~~a~~~y~k 127 (152)
T 2g3a_A 96 LLAMAEEEARKRGCMGAYIDTMNPDALRTYER 127 (152)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEecCccHHHHHHH
Confidence 34556778888999999999986555544443
No 63
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=30.12 E-value=46 Score=21.96 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q 046558 65 VELSEAKAVLWGMQ 78 (136)
Q Consensus 65 ~~~aE~~Al~~aL~ 78 (136)
..+||..|++.|-+
T Consensus 102 ~~HAE~~AI~~a~~ 115 (193)
T 1vq2_A 102 EIHAELNAILFAAE 115 (193)
T ss_dssp CBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh
Confidence 35899999988754
No 64
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=29.73 E-value=40 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=23.5
Q ss_pred eEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHH
Q 046558 39 GLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWG 76 (136)
Q Consensus 39 g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~a 76 (136)
-+|+||-+ +|+++..+.... ....+||..|+..|
T Consensus 37 ~vGaviv~-~g~ii~~g~n~~---~~~~HAE~~Ai~~a 70 (360)
T 2hxv_A 37 PVGAVVVK-DGRIIAEGFHPY---FGGPHAERMAIESA 70 (360)
T ss_dssp CCEEEEEE-TTEEEEEEECCS---TTSCCHHHHHHHHH
T ss_pred CEEEEEEE-CCEEEEEEeCCC---CCCcCHHHHHHHHH
Confidence 45666665 788877655433 23569999999887
No 65
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=29.56 E-value=14 Score=26.18 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=15.4
Q ss_pred HHHHHcCCCeEEEeechHHH
Q 046558 78 QAAAKAGATSVILESDSKGV 97 (136)
Q Consensus 78 ~~a~~~g~~~v~iesDs~~v 97 (136)
+.+...+..++.+|||+..+
T Consensus 194 ~~v~~ip~drlLlETD~P~l 213 (287)
T 3rcm_A 194 PLVGNIPEGRLMLESDAPYL 213 (287)
T ss_dssp HHHTTSCTTSEEECCCTTSC
T ss_pred HHHHhcCCccEEEeccCCcc
Confidence 34455689999999999754
No 66
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=28.82 E-value=60 Score=23.20 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=33.8
Q ss_pred eeeEeEEEecCCCcEEEeecccccc--cCCHHHHHHHHHHHHHHHHHHcCCCeEEE
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKS--SGDVELSEAKAVLWGMQAAAKAGATSVIL 90 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~--~~s~~~aE~~Al~~aL~~a~~~g~~~v~i 90 (136)
...+|.+++..+|++..+..-.... ..-...||-.|+..+... -+..+..|.+
T Consensus 70 ~f~VGAall~~dG~i~~G~NvEnas~~~~~t~CAEr~Ai~~A~~~-G~~~~~~iav 124 (294)
T 1ctt_A 70 NFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLS-GEKALAAITV 124 (294)
T ss_dssp CCCCEEEEEETTSCEEEEECBCCTTSCGGGCBCHHHHHHHHHHHT-TCCCEEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEcCCccCccCCCccCHHHHHHHHHHHc-CCCcEEEEEE
Confidence 4568899999999988766533222 113578999998887753 2222445544
No 67
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=27.79 E-value=50 Score=24.26 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=24.1
Q ss_pred eeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHH
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWG 76 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~a 76 (136)
.-+|+||-+ +|+++..+.... ....+||..|+..|
T Consensus 36 ~~vGaviv~-~g~ii~~g~n~~---~~~~HAE~~Ai~~a 70 (373)
T 2b3z_A 36 PLVGAVVVK-DGQIVGMGAHLK---YGEAHAEVHAIHMA 70 (373)
T ss_dssp CCCEEEEES-SSSEEEEEECCS---TTSCCHHHHHHHHH
T ss_pred CcEEEEEEE-CCEEEEEEeCCC---CCCcCHHHHHHHHh
Confidence 346777765 788887655433 23579999999875
No 68
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=27.40 E-value=1.3e+02 Score=19.75 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=29.8
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
..+|-|.+|.++......... .....|++..+.+|+.+...+
T Consensus 162 ~~~lID~~G~I~~~~~g~~~~--~~~~~~il~~l~~l~~~~~~~ 203 (222)
T 3ztl_A 162 GLFIIDPNGILRQITINDKPV--GRSVDETLRLLDAFQFVEKHG 203 (222)
T ss_dssp EEEEECTTSEEEEEEEECTTB--CCCHHHHHHHHHHHHHHHHHS
T ss_pred eEEEECCCCeEEEEEecCCCC--CCCHHHHHHHHHHhhcccccC
Confidence 478889999998876554332 234678888888888876544
No 69
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=26.07 E-value=51 Score=24.55 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=24.3
Q ss_pred eeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHH
Q 046558 38 AGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWG 76 (136)
Q Consensus 38 ~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~a 76 (136)
.-+|+||-+ +|+++..+.... ....+||..|+..+
T Consensus 52 ~~vGaviv~-~g~ii~~g~n~~---~g~~HAE~~Ai~~a 86 (402)
T 2g6v_A 52 PNVGCVIVK-DGEIVGEGYHQR---AGEPHAEVHALRMA 86 (402)
T ss_dssp CCCEEEEEE-TTEEEEEEECCC---TTSCCHHHHHHHHH
T ss_pred CCEEEEEEE-CCEEEEEEeCCC---CCccHHHHHHHHHh
Confidence 346777776 788887655433 24679999999875
No 70
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=24.55 E-value=62 Score=20.47 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=30.1
Q ss_pred EEEecCCCcEEEeeccc-cc----ccCCHHHHHHHHHHHHHHHHHHcCCCeEEEee
Q 046558 42 AVVKNHKGETVAAAVST-FK----SSGDVELSEAKAVLWGMQAAAKAGATSVILES 92 (136)
Q Consensus 42 ~vird~~G~~~~~~~~~-~~----~~~s~~~aE~~Al~~aL~~a~~~g~~~v~ies 92 (136)
+-+.|..|.++...+.- ++ .-.++..|. +|...+.+.+.++|++.|.+..
T Consensus 43 vtiTD~~G~~i~~~SaG~~GfKg~rksTp~AA~-~aa~~~~~~a~e~Gi~~v~V~v 97 (140)
T 3bbn_K 43 VTVTDVRGRVVSWASAGTCGFRGTKRGTPFAAQ-TAAGNAIRTVVEQGMQRAEVMI 97 (140)
T ss_dssp EEEECSSSCEEEEEETTTSSCCTTSCSSHHHHH-HHHTSGGGTSTTTCCCEEEEEE
T ss_pred EEEEcCCCCEEEEEeccceeEcccccCCHHHHH-HHHHHHHHHHHHhCCeEEEEEE
Confidence 56778888877655432 22 123333333 3334556667789999999865
No 71
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=24.48 E-value=2.1e+02 Score=20.91 Aligned_cols=39 Identities=10% Similarity=0.023 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEeechHHHHHHHhc
Q 046558 65 VELSEAKAVLWGMQAAAKAGATSVILESDSKGVIELINN 103 (136)
Q Consensus 65 ~~~aE~~Al~~aL~~a~~~g~~~v~iesDs~~vv~~i~~ 103 (136)
...+|+..+..+.+.....|++++.++.-...+++.+-.
T Consensus 159 ~~~aDaEvi~l~~~~l~~lgl~~~~i~l~~~~i~~~ll~ 197 (373)
T 3rac_A 159 SVDVDMDVLRLLHEASAAAGVRHHRIVVSHARLVPRLLD 197 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCSCEEEEEETTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceEEEecCHHHHHHHHH
Confidence 456666666667788888899877777665566655543
No 72
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=24.42 E-value=2.1e+02 Score=21.03 Aligned_cols=51 Identities=6% Similarity=-0.033 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCeEEEeechHHHHHHHhcCCCCCCchHHHHHHHHHHhhcCCceEEEEE
Q 046558 73 VLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHV 133 (136)
Q Consensus 73 l~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v 133 (136)
+..|.++|.+.+-++|.+ +.+...-...-+...+-++...+.|+++.+.|.
T Consensus 172 ar~AFe~A~~r~~kkVt~----------v~KaNvlk~s~glf~~~~~eva~eypdv~~~~~ 222 (364)
T 3flk_A 172 LKYAFDLAEKRERKHVTS----------ATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQ 222 (364)
T ss_dssp HHHHHHHHHHSSSCEEEE----------EECTTTSTTHHHHHHHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHHHhcCCCeEEE----------EECcchhhhHHHHHHHHHHHHHHHCCCceEEee
Confidence 567899999988778877 333221111222333334555678999998875
No 73
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=24.24 E-value=1e+02 Score=18.90 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=19.6
Q ss_pred EEEecCCCcEEEeecccccccCCHHHHHHHHHHHHH
Q 046558 42 AVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGM 77 (136)
Q Consensus 42 ~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL 77 (136)
.+|-|.+|.+.......... ..+...|+.+++.+|
T Consensus 122 tflID~~G~I~~~~~~~~~~-~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 122 VFVIDKEGKVRYKWVSDDPT-KEPPYDEIEKVVKSL 156 (157)
T ss_dssp EEEECTTSBEEEEEEESSTT-CCCCHHHHHHHHHHT
T ss_pred EEEECCCCEEEEEEECCCCC-CCCCHHHHHHHHHHh
Confidence 56779999987765432221 223344555555543
No 74
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=24.21 E-value=25 Score=25.46 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=17.8
Q ss_pred HHHHHHcCCCeEEEeechHHH
Q 046558 77 MQAAAKAGATSVILESDSKGV 97 (136)
Q Consensus 77 L~~a~~~g~~~v~iesDs~~v 97 (136)
++.+......++.+||||..+
T Consensus 231 ~~~v~~iPldrlLlETDaP~l 251 (325)
T 3ipw_A 231 LNVMKQIPIERLHIETDCPYC 251 (325)
T ss_dssp HHHHTTSCGGGEEECCCTTSC
T ss_pred HHHHHhCCcccEEEeCCCccc
Confidence 466777889999999999876
No 75
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=24.19 E-value=56 Score=14.21 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCC.
Q 046558 65 VELSEAKAVLWGMQAAAKAGA. 85 (136)
Q Consensus 65 ~~~aE~~Al~~aL~~a~~~g~. 85 (136)
+-.||.+.+.+.-+++..+|+
T Consensus 5 p~IAe~M~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 5 TTIAGVMTLSQVKGFVRKNGVx 26 (26)
T ss_pred hHHHHHHhHHHHHHHHHHcCC.
Confidence 346899999999999888774
No 76
>3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae}
Probab=24.05 E-value=1.2e+02 Score=22.68 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=16.7
Q ss_pred HHHHHHcCCCeEEEeechH
Q 046558 77 MQAAAKAGATSVILESDSK 95 (136)
Q Consensus 77 L~~a~~~g~~~v~iesDs~ 95 (136)
++.+...-..++.+|||+.
T Consensus 287 ~e~v~~iPldrLLlETDaP 305 (401)
T 3e2v_A 287 LAVVKQIPTERLLLETDAP 305 (401)
T ss_dssp HHHHHTSCGGGEEECCCTT
T ss_pred HHHHHhCCchhEEEecCCC
Confidence 4677788899999999999
No 77
>3evs_C Bone morphogenetic protein receptor type-1B; ligand-receptor complex, cystin-knot ligand, three-finger to (receptor); 2.10A {Mus musculus}
Probab=23.23 E-value=1.1e+02 Score=18.51 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=19.2
Q ss_pred CCCCcEEEEeceeEecC-------CCeeeEeEEEecCCCcEEEe
Q 046558 18 PEEGWLKVNVDDAMDRV-------NYLAGLGAVVKNHKGETVAA 54 (136)
Q Consensus 18 P~~~~~k~n~Dgs~~~~-------~~~~g~G~vird~~G~~~~~ 54 (136)
++.+.+||++|+.+..+ ++...+..+.++..|..+..
T Consensus 18 ~~~~~L~C~C~~~C~~~~~n~tC~t~g~Cf~sv~~~~~G~~~~~ 61 (119)
T 3evs_C 18 PRPKILRCKCHHHCPEDSVNNICSTDGYCFTMIEEDDSGMPVVT 61 (119)
T ss_dssp ----CEEEECSSSCCTTSCTTEEEESSEEEEEEEECTTCSEEEE
T ss_pred ccCCCEEeeeCCCcCCCCcCCeeccCCEEEEEEEEcCCCcEEEE
Confidence 34567999999855431 12223444556666765443
No 78
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=23.14 E-value=1.5e+02 Score=18.90 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=28.7
Q ss_pred eEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHHHcC
Q 046558 41 GAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAAKAG 84 (136)
Q Consensus 41 G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~~~g 84 (136)
..++-|.+|.++........ ......|+...+.+|+.....+
T Consensus 129 ~~~lid~~G~i~~~~~g~~~--~~~~~~ell~~l~~l~~~~~~~ 170 (202)
T 1uul_A 129 GLFIIDPKQNLRQITVNDLP--VGRDVDEALRLVKAFQFVEKHG 170 (202)
T ss_dssp EEEEECTTSBEEEEEEECTT--BCCCHHHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCEEEEEEeCCCC--CCCCHHHHHHHHHHhhhhhhcC
Confidence 46788999999877544332 1235678888888888765544
No 79
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=22.84 E-value=2.3e+02 Score=20.80 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCeEEEeechHHHHHHHhcCCCCCCchHHHHHHHHHHhhcCCceEEEEE
Q 046558 73 VLWGMQAAAKAGATSVILESDSKGVIELINNKRSTLTDTFWVIFDIIEAKKIFQNFKAQHV 133 (136)
Q Consensus 73 l~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~~~~~~~~~~~i~~i~~l~~~~~~~~~~~v 133 (136)
+..|.++|.+.+-++|.+- .+...-...-+...+-++...+.|+++.+.|.
T Consensus 169 ar~AFe~A~~r~rkkVt~v----------~KaNvlk~sdglf~~~~~eva~eypdI~~~~~ 219 (354)
T 3blx_B 169 IRYAFEYARAIGRPRVIVV----------HKSTIQRLADGLFVNVAKELSKEYPDLTLETE 219 (354)
T ss_dssp HHHHHHHHHHTTCSEEEEE----------ESCTTTCHHHHHHHHHHHHHGGGCTTSEEEEE
T ss_pred HHHHHHHHHhcCCCeEEEE----------ECCcchHhHHHHHHHHHHHHHHHCCCceEEEE
Confidence 4679999999877788773 22221111222334445555678999988875
No 80
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=22.63 E-value=1.3e+02 Score=21.59 Aligned_cols=84 Identities=10% Similarity=0.011 Sum_probs=50.6
Q ss_pred eeeEeEEEecCCCcEEEeecccccccCCHHHHHHHHHHHHHHHHH-HcCCCeEEEeechHHHHHHHhcCCCCCCchHHHH
Q 046558 37 LAGLGAVVKNHKGETVAAAVSTFKSSGDVELSEAKAVLWGMQAAA-KAGATSVILESDSKGVIELINNKRSTLTDTFWVI 115 (136)
Q Consensus 37 ~~g~G~vird~~G~~~~~~~~~~~~~~s~~~aE~~Al~~aL~~a~-~~g~~~v~iesDs~~vv~~i~~~~~~~~~~~~~i 115 (136)
....|..++..+|++..+..-......-.+-||-.|+..++..=. ...++.+.+-.|. ....++.+
T Consensus 212 ~~~vGAAl~t~dG~iytG~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~aiv~v~~~----------~~~~sPCG--- 278 (298)
T 4eg2_A 212 QNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVESA----------TGKISHLA--- 278 (298)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECT----------TCSSCCHH---
T ss_pred CCCeEEEEEeCCCCEEEEEeeeccccCCCCCHHHHHHHHHHHCCCCccCeEEEEEEeCC----------CCCcCCcH---
Confidence 356888899999998877653332233456688888877754210 1136777776653 11223333
Q ss_pred HHHHHHhhcC-CceEEEEEe
Q 046558 116 FDIIEAKKIF-QNFKAQHVL 134 (136)
Q Consensus 116 ~~i~~l~~~~-~~~~~~~v~ 134 (136)
.||.++..| +++.+.|+.
T Consensus 279 -~CRqvL~e~~pdv~l~y~~ 297 (298)
T 4eg2_A 279 -DTQATLEVINPDIPLSYLS 297 (298)
T ss_dssp -HHHHHHHHHCTTCCEEEEE
T ss_pred -HHHHHHHHhCCCCceEEEe
Confidence 566666655 588888764
No 81
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein struc initiative, midwest center for structural genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Probab=22.05 E-value=1.2e+02 Score=17.91 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=17.4
Q ss_pred HHHHHHHHHHcCCCeEEEeech
Q 046558 73 VLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 73 l~~aL~~a~~~g~~~v~iesDs 94 (136)
+..+++.|.+.|+.+|.+++..
T Consensus 103 l~~~~~~a~~~g~~~i~l~v~~ 124 (150)
T 2dxq_A 103 VRHAIETAFGANCYKVMLLTGR 124 (150)
T ss_dssp HHHHHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHHHHHCCCCEEEEEeCC
Confidence 4556788889999999988743
No 82
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=20.39 E-value=99 Score=20.90 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCCeEEEeechH
Q 046558 73 VLWGMQAAAKAGATSVILESDSK 95 (136)
Q Consensus 73 l~~aL~~a~~~g~~~v~iesDs~ 95 (136)
+..|.+.|.++|+++|++.|-+=
T Consensus 40 l~la~era~e~~Ik~iVVASssG 62 (206)
T 1t57_A 40 LELVGERADQLGIRNFVVASVSG 62 (206)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHcCCCEEEEEeCCC
Confidence 45688999999999999988753
No 83
>4fd4_A Arylalkylamine N-acetyltransferase like 5B; GNAT; 1.95A {Aedes aegypti}
Probab=20.10 E-value=1.6e+02 Score=18.30 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCCeEEEeechHHHHHHHhcC
Q 046558 73 VLWGMQAAAKAGATSVILESDSKGVIELINNK 104 (136)
Q Consensus 73 l~~aL~~a~~~g~~~v~iesDs~~vv~~i~~~ 104 (136)
+..+++.|.+.|+..+.+++++...+....+.
T Consensus 148 l~~~~~~a~~~g~~~i~~~~~n~~a~~~Y~k~ 179 (217)
T 4fd4_A 148 LQFQMDLSKKLGFKAISGDFTSVFSVKLAEKL 179 (217)
T ss_dssp HHHHHHHHHHHTCSEEEEEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHC
Confidence 45567788899999999988887777666553
No 84
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1
Probab=20.01 E-value=1.2e+02 Score=18.29 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCCeEEEeech
Q 046558 72 AVLWGMQAAAKAGATSVILESDS 94 (136)
Q Consensus 72 Al~~aL~~a~~~g~~~v~iesDs 94 (136)
++..+++.|.+.|+.+|.++++.
T Consensus 106 ll~~~~~~a~~~g~~~i~l~v~~ 128 (170)
T 2ge3_A 106 LMRRTLDAAHEFGLHRIELSVHA 128 (170)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEET
T ss_pred HHHHHHHHHHHCCceEEEEEEEc
Confidence 45567788888999999988764
Done!