AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>046561
MDSHSVSHMNSTISENNDNNTAAALMIIGSSSTTTSPPTPSSAGAATSSSSRYENQKRRD
WNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCP
LRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEKKKR
KRPPQQQQQQQQQIPLLPPASSAS
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with LSH4 LSH4 LSH4 LIGHT SENSITIVE HYPOCOTYLS 4	protein from Arabidopsis thaliana	8.1e-60
BLAST match view associations BLAST with LSH3 LSH3 LSH3 AT2G31160	protein from Arabidopsis thaliana	5.7e-59
BLAST match view associations BLAST with LSH6 LSH6 LSH6 AT1G07090	protein from Arabidopsis thaliana	1.3e-52
BLAST match view associations BLAST with LSH1 LSH1 LSH1 AT5G28490	protein from Arabidopsis thaliana	1.1e-50
BLAST match view associations BLAST with LSH5 LSH5 LSH5 AT5G58500	protein from Arabidopsis thaliana	1.2e-49
BLAST match view associations BLAST with LSH2 LSH2 LSH2 AT3G04510	protein from Arabidopsis thaliana	2.9e-48
BLAST match view associations BLAST with LSH10 LSH10 LSH10 AT2G42610	protein from Arabidopsis thaliana	7.7e-48
BLAST match view associations BLAST with LSH7 LSH7 LSH7 AT1G78815	protein from Arabidopsis thaliana	9.3e-43
BLAST match view associations BLAST with LSH9 LSH9 LSH9 AT4G18610	protein from Arabidopsis thaliana	5.3e-40
BLAST match view associations BLAST with LSH8 LSH8 LSH8 AT1G16910	protein from Arabidopsis thaliana	2.1e-36
Back to top
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046561
        (204 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2082170 - symbol:LSH4 "LIGHT SENSITIVE HYPOCOT...   613  8.1e-60   1
TAIR|locus:2055897 - symbol:LSH3 "AT2G31160" species:3702...   605  5.7e-59   1
TAIR|locus:2007382 - symbol:LSH6 "AT1G07090" species:3702...   545  1.3e-52   1
TAIR|locus:2147494 - symbol:LSH1 "AT5G28490" species:3702...   527  1.1e-50   1
TAIR|locus:2171263 - symbol:LSH5 "AT5G58500" species:3702...   517  1.2e-49   1
TAIR|locus:2100850 - symbol:LSH2 "AT3G04510" species:3702...   504  2.9e-48   1
TAIR|locus:2041514 - symbol:LSH10 "AT2G42610" species:370...   500  7.7e-48   1
TAIR|locus:505006228 - symbol:LSH7 "AT1G78815" species:37...   452  9.3e-43   1
TAIR|locus:2124067 - symbol:LSH9 "AT4G18610" species:3702...   426  5.3e-40   1
TAIR|locus:2015591 - symbol:LSH8 "AT1G16910" species:3702...   392  2.1e-36   1


>TAIR|locus:2082170 [details] [associations]
            symbol:LSH4 "LIGHT SENSITIVE HYPOCOTYLS 4" species:3702
            "Arabidopsis thaliana" [GO:0005739 "mitochondrion" evidence=ISM]
            EMBL:CP002686 EMBL:AB015474 InterPro:IPR006936 Pfam:PF04852
            HOGENOM:HOG000239606 ProtClustDB:CLSN2681853 EMBL:AP000733
            IPI:IPI00532469 RefSeq:NP_001078202.2 UniGene:At.37728
            EnsemblPlants:AT3G23290.2 GeneID:821908 KEGG:ath:AT3G23290
            TAIR:At3g23290 OMA:FEENGGS PhylomeDB:Q9LW68 Genevestigator:Q9LW68
            Uniprot:Q9LW68
        Length = 195

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 121/182 (66%), Positives = 129/182 (70%)

Query:     1 MDSHSVSHMNSTISENNDNNTAAALMIIXXXXXXXXXXXXXXXXXXXXXXXRYENQKRRD 60
             MD H +  M +T   N  +NT   +                          RYENQKRRD
Sbjct:     1 MD-HIIGFMGTT---NMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRD 56

Query:    61 WNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHXXXXXXXXXX 120
             WNTFGQYL+NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GH          
Sbjct:    57 WNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACP 116

Query:   121 LRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEKKKR 180
             LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYEKKKR
Sbjct:   117 LRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKR 176

Query:   181 KR 182
             KR
Sbjct:   177 KR 178


>TAIR|locus:2055897 [details] [associations]
            symbol:LSH3 "AT2G31160" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0007389 "pattern specification process"
            evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
            evidence=RCA] [GO:0009944 "polarity specification of
            adaxial/abaxial axis" evidence=RCA] [GO:0010014 "meristem
            initiation" evidence=RCA] [GO:0010075 "regulation of meristem
            growth" evidence=RCA] [GO:0048438 "floral whorl development"
            evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
            EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC005311
            InterPro:IPR006936 Pfam:PF04852 EMBL:AY056383 EMBL:AY081705
            IPI:IPI00548372 PIR:C84717 RefSeq:NP_565716.1 UniGene:At.24312
            IntAct:O82268 STRING:O82268 EnsemblPlants:AT2G31160.1 GeneID:817672
            KEGG:ath:AT2G31160 TAIR:At2g31160 eggNOG:NOG307109
            HOGENOM:HOG000239606 InParanoid:O82268 OMA:QQFQMLP PhylomeDB:O82268
            ProtClustDB:CLSN2681853 ArrayExpress:O82268 Genevestigator:O82268
            Uniprot:O82268
        Length = 219

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 115/131 (87%), Positives = 118/131 (90%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYENQKRRDWNTFGQYL+NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHT IC FYGH 
Sbjct:    54 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGHP 113

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      LRQAWGSLDALIGRLRAAFEENGGKPE NPFGARAVRLYLREVRD+QSKAR
Sbjct:   114 NPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKAR 173

Query:   172 GISYEKKKRKR 182
             G+SYEKKKRKR
Sbjct:   174 GVSYEKKKRKR 184


>TAIR|locus:2007382 [details] [associations]
            symbol:LSH6 "AT1G07090" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC067971
            InterPro:IPR006936 Pfam:PF04852 HOGENOM:HOG000239606
            ProtClustDB:CLSN2681853 eggNOG:NOG318039 EMBL:AY086869
            EMBL:BT003842 EMBL:BT020303 EMBL:BT024584 IPI:IPI00548420
            PIR:G86205 RefSeq:NP_563780.1 UniGene:At.42313 PaxDb:Q9LMK2
            PRIDE:Q9LMK2 EnsemblPlants:AT1G07090.1 GeneID:837220
            KEGG:ath:AT1G07090 TAIR:At1g07090 InParanoid:Q9LMK2 OMA:HVAACPY
            PhylomeDB:Q9LMK2 ArrayExpress:Q9LMK2 Genevestigator:Q9LMK2
            Uniprot:Q9LMK2
        Length = 196

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 99/131 (75%), Positives = 114/131 (87%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QKRRDWNTF QYLKNH+PPL+LSRCSGAHV+EFL+YLDQFGKTKVH   CP++GH 
Sbjct:    31 RYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQ 90

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      L+QAWGSLDALIGRLRAA+EENGG+P++NPF ARAVR+YLREVR+ Q+KAR
Sbjct:    91 QPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKAR 150

Query:   172 GISYEKKKRKR 182
             GI YEKKKRKR
Sbjct:   151 GIPYEKKKRKR 161


>TAIR|locus:2147494 [details] [associations]
            symbol:LSH1 "AT5G28490" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0009416 "response to light
            stimulus" evidence=IMP] [GO:0009637 "response to blue light"
            evidence=IGI] [GO:0009826 "unidimensional cell growth"
            evidence=IMP] [GO:0010114 "response to red light" evidence=IGI]
            [GO:0010218 "response to far red light" evidence=IGI] GO:GO:0005634
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009637 GO:GO:0010218
            GO:GO:0010114 GO:GO:0009826 InterPro:IPR006936 Pfam:PF04852
            HOGENOM:HOG000239606 ProtClustDB:CLSN2681853 EMBL:AY319947
            EMBL:BT010821 EMBL:BT011304 IPI:IPI00519848 RefSeq:NP_198201.1
            UniGene:At.49252 IntAct:Q6NNI3 STRING:Q6NNI3 PRIDE:Q6NNI3
            EnsemblPlants:AT5G28490.1 GeneID:832941 KEGG:ath:AT5G28490
            TAIR:At5g28490 eggNOG:NOG323153 InParanoid:Q6NNI3 OMA:LISHQPN
            PhylomeDB:Q6NNI3 Genevestigator:Q6NNI3 Uniprot:Q6NNI3
        Length = 190

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 100/130 (76%), Positives = 110/130 (84%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYENQKRRDWNTF QYL+NHRPPLSL  CSGAHVLEFLRYLDQFGKTKVH   C F+G  
Sbjct:    25 RYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLP 84

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      LRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVRL+LREVRD Q+KAR
Sbjct:    85 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKAR 144

Query:   172 GISYEKKKRK 181
             G+SYEKK+++
Sbjct:   145 GVSYEKKRKR 154


>TAIR|locus:2171263 [details] [associations]
            symbol:LSH5 "AT5G58500" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002688
            GenomeReviews:BA000015_GR EMBL:AB025632 InterPro:IPR006936
            Pfam:PF04852 HOGENOM:HOG000239606 ProtClustDB:CLSN2681853
            EMBL:BT010401 IPI:IPI00523728 RefSeq:NP_200658.1 UniGene:At.29277
            PaxDb:Q9FGH2 PRIDE:Q9FGH2 EnsemblPlants:AT5G58500.1 GeneID:835963
            KEGG:ath:AT5G58500 TAIR:At5g58500 eggNOG:NOG289149
            InParanoid:Q9FGH2 OMA:VHATACP PhylomeDB:Q9FGH2
            Genevestigator:Q9FGH2 Uniprot:Q9FGH2
        Length = 182

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 97/132 (73%), Positives = 110/132 (83%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QKRRDWNTF QYL+NH+PPL+LSRCSGAHVLEFL+YLDQFGKTKVH   CPF+G  
Sbjct:    19 RYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQP 78

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEE-NGGKPEANPFGARAVRLYLREVRDVQSKA 170
                      L+QAWGSLDALIGRLRAAFEE  GG PE+NPF A+AVR+YL+EVR  Q+KA
Sbjct:    79 NPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQAKA 138

Query:   171 RGISYEKKKRKR 182
             RGI Y+KKKRKR
Sbjct:   139 RGIPYDKKKRKR 150


>TAIR|locus:2100850 [details] [associations]
            symbol:LSH2 "AT3G04510" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC022287
            InterPro:IPR006936 Pfam:PF04852 HOGENOM:HOG000239606
            ProtClustDB:CLSN2681853 EMBL:AY630774 EMBL:AY924763 IPI:IPI00516968
            RefSeq:NP_187101.1 UniGene:At.66526 EnsemblPlants:AT3G04510.1
            GeneID:819607 KEGG:ath:AT3G04510 TAIR:At3g04510 eggNOG:NOG327915
            InParanoid:Q9M836 OMA:MANYHHG PhylomeDB:Q9M836 ArrayExpress:Q9M836
            Genevestigator:Q9M836 Uniprot:Q9M836
        Length = 201

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 93/130 (71%), Positives = 109/130 (83%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYENQKRRDWNTF QYL+NH PPLSL+ CSGAHVL+FLRYLDQFGKTKVH   C F+G  
Sbjct:    33 RYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLP 92

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      LRQAWGSLDALIGRLRAA+EENGG PE +PFG+R+VR++LREVRD Q+K+R
Sbjct:    93 NPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSR 152

Query:   172 GISYEKKKRK 181
             G+SYEKK+++
Sbjct:   153 GVSYEKKRKR 162


>TAIR|locus:2041514 [details] [associations]
            symbol:LSH10 "AT2G42610" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC007087
            InterPro:IPR006936 Pfam:PF04852 HOGENOM:HOG000239606
            ProtClustDB:CLSN2681853 EMBL:AF218765 EMBL:BT003740 EMBL:EF597874
            EMBL:EF597875 EMBL:EF597876 EMBL:EF597877 EMBL:EF597878
            EMBL:EF597879 EMBL:EF597880 EMBL:EF597881 EMBL:EF597882
            EMBL:EF597883 EMBL:EF597884 EMBL:EF597885 EMBL:EF597886
            EMBL:EF597887 EMBL:EF597888 EMBL:EF597889 EMBL:EF597890
            EMBL:EF597891 EMBL:EF597892 EMBL:EF597893 EMBL:EF597894
            EMBL:EF597895 EMBL:EF597896 EMBL:EF597897 EMBL:AK118714
            EMBL:AK119048 IPI:IPI00528103 PIR:A84856 RefSeq:NP_565978.1
            RefSeq:NP_850374.1 UniGene:At.24332 PaxDb:Q9S7R3 PRIDE:Q9S7R3
            EnsemblPlants:AT2G42610.1 EnsemblPlants:AT2G42610.2 GeneID:818861
            KEGG:ath:AT2G42610 TAIR:At2g42610 eggNOG:NOG281199
            InParanoid:Q9S7R3 OMA:PPVPMSH PhylomeDB:Q9S7R3 ArrayExpress:Q9S7R3
            Genevestigator:Q9S7R3 Uniprot:Q9S7R3
        Length = 177

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 93/131 (70%), Positives = 106/131 (80%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QKRRDWNTFGQYLKN RPP+ +S CS  HVL+FLRYLDQFGKTKVH P C FYG  
Sbjct:    25 RYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQP 84

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      LRQAWGSLDALIGRLRAA+EENGG PE NPF + A+R+YLREVR+ Q+KAR
Sbjct:    85 EPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKAR 144

Query:   172 GISYEKKKRKR 182
             GI Y+KKK+K+
Sbjct:   145 GIPYKKKKKKK 155


>TAIR|locus:505006228 [details] [associations]
            symbol:LSH7 "AT1G78815" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009691 "cytokinin biosynthetic process"
            evidence=RCA] EMBL:CP002684 EMBL:AC005679 InterPro:IPR006936
            Pfam:PF04852 ProtClustDB:CLSN2681853 UniGene:At.22687
            IPI:IPI00520064 PIR:D96817 RefSeq:NP_565190.1 UniGene:At.70335
            PRIDE:Q9ZVA0 EnsemblPlants:AT1G78815.1 GeneID:844218
            KEGG:ath:AT1G78815 TAIR:At1g78815 InParanoid:Q9ZVA0 OMA:QVEPAGQ
            PhylomeDB:Q9ZVA0 Genevestigator:Q9ZVA0 Uniprot:Q9ZVA0
        Length = 195

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 81/131 (61%), Positives = 102/131 (77%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QKRRDWNTF QYL+N +PP+ +S+C   H+L+FL+YLDQFGKTKVH   C F+G  
Sbjct:    40 RYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQV 99

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      L+QAWGSLDALIGRLRAAFEENGG PE NPF    +R++LREVRD Q+KAR
Sbjct:   100 EPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKAR 159

Query:   172 GISYEKKKRKR 182
             G+ Y+K+K+++
Sbjct:   160 GVPYKKRKKRK 170


>TAIR|locus:2124067 [details] [associations]
            symbol:LSH9 "AT4G18610" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009691 "cytokinin biosynthetic process"
            evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
            evidence=RCA] [GO:0045492 "xylan biosynthetic process"
            evidence=RCA] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161549
            EMBL:AL035526 InterPro:IPR006936 Pfam:PF04852 HOGENOM:HOG000239606
            ProtClustDB:CLSN2681853 EMBL:BT010856 EMBL:BT014677 IPI:IPI00518350
            PIR:T04853 RefSeq:NP_193596.1 UniGene:At.32884 PRIDE:Q9SN52
            EnsemblPlants:AT4G18610.1 GeneID:827595 KEGG:ath:AT4G18610
            TAIR:At4g18610 eggNOG:NOG289576 InParanoid:Q9SN52 OMA:KDVANSS
            PhylomeDB:Q9SN52 ArrayExpress:Q9SN52 Genevestigator:Q9SN52
            Uniprot:Q9SN52
        Length = 191

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 82/132 (62%), Positives = 99/132 (75%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QKRRDWNTF QYLK+  PPL +S+    HVL FLRYLDQFGKTKVH   C F+G  
Sbjct:    37 RYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFGQP 96

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGG-KPEANPFGARAVRLYLREVRDVQSKA 170
                      L+QAWGSLDALIGRLRAA+EE+GG  P+ NPF   ++R++LREVR+ Q+KA
Sbjct:    97 DPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQAKA 156

Query:   171 RGISYEKKKRKR 182
             RGI Y KKKR++
Sbjct:   157 RGIPYRKKKRRK 168


>TAIR|locus:2015591 [details] [associations]
            symbol:LSH8 "AT1G16910" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC051629
            InterPro:IPR006936 Pfam:PF04852 HOGENOM:HOG000239606
            ProtClustDB:CLSN2681853 EMBL:AY800583 IPI:IPI00537981 PIR:F86304
            RefSeq:NP_173135.1 UniGene:At.51174 UniGene:At.68988
            EnsemblPlants:AT1G16910.1 GeneID:838262 KEGG:ath:AT1G16910
            TAIR:At1g16910 eggNOG:NOG318039 InParanoid:Q9FZ51 PhylomeDB:Q9FZ51
            ArrayExpress:Q9FZ51 Genevestigator:Q9FZ51 Uniprot:Q9FZ51
        Length = 164

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 75/129 (58%), Positives = 90/129 (69%)

Query:    52 RYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHX 111
             RYE+QK RDWNTF QYL    PP+ +  C   H+L+FL+  DQFGKTKVH   C F+G  
Sbjct:    23 RYESQKSRDWNTFCQYLMTKMPPVHVWECESNHILDFLQSRDQFGKTKVHIQGCVFFGQK 82

Query:   112 XXXXXXXXXLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKAR 171
                      L+QAWGSLDALIGRLRAA+EENGG  E NPF    +R++LREVR  Q+KAR
Sbjct:    83 EPPGECNCPLKQAWGSLDALIGRLRAAYEENGGLTEKNPFARGGIRIFLREVRGSQAKAR 142

Query:   172 GISYEKKKR 180
             G+ Y+KKKR
Sbjct:   143 GVLYKKKKR 151


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      204       154   0.00088  105 3  11 22  0.48    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  150 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.21u 0.10s 14.31t   Elapsed:  00:00:01
  Total cpu time:  14.21u 0.10s 14.31t   Elapsed:  00:00:01
  Start:  Mon May 20 17:41:44 2013   End:  Mon May 20 17:41:45 2013
Back to top
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
