BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046561
         (204 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q1ME31|MURD_RHIL3 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Rhizobium
           leguminosarum bv. viciae (strain 3841) GN=murD PE=3 SV=1
          Length = 470

 Score = 31.6 bits (70), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 26  MIIGSSSTTTSPPTPSSAGAATSSSSRYENQKRRDWNTFGQYLKNHRPPLS--------- 76
           ++ G +  T     P S   A +   R E+ +  DW+    ++ +   PL+         
Sbjct: 28  LVTGGAEVTAWDDNPDSVAKAAAEGIRTEDLRNIDWSQQALFVLSPGVPLTHPKPHWTVD 87

Query: 77  LSRCSGAHVLEFLRYLDQFGKTKVHTPICPF 107
           L+R +G  ++  +    +  + + H P CPF
Sbjct: 88  LARAAGVDIVGDVELFVR--ERRAHAPDCPF 116


>sp|Q9UL01|DSE_HUMAN Dermatan-sulfate epimerase OS=Homo sapiens GN=DSE PE=1 SV=1
          Length = 958

 Score = 31.6 bits (70), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 46  ATSSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQ 94
           A +S   YE   RR W    QYL NH+P   ++  +G+ VL    YL +
Sbjct: 182 ANASGYMYETSYRRGWGF--QYLHNHQPTNCMALLTGSLVLMNQGYLQE 228


>sp|P0C2H4|DSE_BOVIN Dermatan-sulfate epimerase OS=Bos taurus GN=DSE PE=1 SV=1
          Length = 958

 Score = 31.6 bits (70), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 46  ATSSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQ 94
           A +S   YE   RR W    QYL NH+P   ++  +G+ VL    YL +
Sbjct: 182 ANASGYMYETSYRRGWGF--QYLHNHQPTNCMALLTGSLVLMNQGYLQE 228


>sp|Q65PB5|RPOB_BACLD DNA-directed RNA polymerase subunit beta OS=Bacillus licheniformis
           (strain DSM 13 / ATCC 14580) GN=rpoB PE=3 SV=1
          Length = 1193

 Score = 31.6 bits (70), Expect = 4.2,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 8   HMNSTISENNDNNTAAALMIIGSSSTTTSPPTPSSAGAATSSSSRYENQKRRDWNTFGQY 67
           ++ +T+ ++N  NT  AL+ I        PPT  +A +     SR+ + KR D  + G+Y
Sbjct: 216 YLRNTLDKDNTENTDKALLEIYERLRPGEPPTVENAKSLL--DSRFFDPKRYDLASVGRY 273

Query: 68  LKNHR 72
             N +
Sbjct: 274 KINKK 278


>sp|Q8BLI4|DSE_MOUSE Dermatan-sulfate epimerase OS=Mus musculus GN=Dse PE=2 SV=1
          Length = 958

 Score = 31.2 bits (69), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 46  ATSSSSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQ 94
           A +S   YE   RR W    QYL NH+P   ++  +G+ +L    YL +
Sbjct: 182 ANASGYMYETSYRRGWGF--QYLHNHQPTNCMALLTGSLILMNQGYLQE 228


>sp|C4KZQ4|RPOB_EXISA DNA-directed RNA polymerase subunit beta OS=Exiguobacterium sp.
           (strain ATCC BAA-1283 / AT1b) GN=rpoB PE=3 SV=1
          Length = 1182

 Score = 30.4 bits (67), Expect = 8.2,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 26/156 (16%)

Query: 8   HMNSTISENNDNNTAAALMIIGSSSTTTSPPTPSSAGAATSSSSRYENQKRRDWNTFGQY 67
           ++ +T+ ++N  +T  AL+ I        PPT  +A +   S  R+ + KR D    G+Y
Sbjct: 216 YLRNTLEKDNTESTEKALIEIYERLRPGEPPTVENAKSLLVS--RFFDPKRYDLANVGRY 273

Query: 68  LKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGS 127
             N +           H+   L     FG+    T + P  G     A      R    +
Sbjct: 274 KMNKK----------LHLKNRL-----FGQKLAETLVDPETGEVLAEAGTILDRR----N 314

Query: 128 LDALIGRLRAAF-----EENGGKPEANPFGARAVRL 158
           LD ++  L         E  GG  E  PFG +++++
Sbjct: 315 LDRILPHLENGLGYIDAEPTGGVAEGEPFGLQSIKV 350


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.128    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,266,188
Number of Sequences: 539616
Number of extensions: 3579549
Number of successful extensions: 36821
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 33706
Number of HSP's gapped (non-prelim): 2600
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)