Query 046561
Match_columns 204
No_of_seqs 81 out of 83
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 23:36:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xo0_A Recombinase CRE; CRE re 92.0 0.43 1.5E-05 36.6 6.6 71 55-153 24-95 (324)
2 3nrw_A Phage integrase/site-sp 85.5 2.9 0.0001 28.9 6.5 69 57-152 32-102 (117)
3 1a0p_A Site-specific recombina 81.9 3.8 0.00013 30.9 6.3 70 55-152 25-96 (290)
4 2ols_A Phosphoenolpyruvate syn 78.6 1.7 5.7E-05 41.9 4.1 39 132-170 561-629 (794)
5 2khq_A Integrase; all-alpha, s 74.6 7 0.00024 25.6 5.2 63 59-152 30-94 (110)
6 2x0s_A Pyruvate phosphate diki 74.6 3.2 0.00011 40.7 4.9 24 147-170 683-709 (913)
7 2oxo_A Integrase; DNA-binding 71.7 14 0.00047 23.0 5.9 62 59-152 29-93 (103)
8 2kkp_A Phage integrase; SAM-li 69.6 11 0.00039 24.7 5.4 53 74-152 47-101 (117)
9 2eqe_A Tumor necrosis factor, 69.3 3.2 0.00011 28.5 2.6 26 93-118 11-36 (48)
10 2zxj_A Transcriptional regulat 66.1 2.6 8.9E-05 31.5 1.8 21 127-147 76-96 (120)
11 1vbg_A Pyruvate,orthophosphate 64.7 5.4 0.00018 39.3 4.1 25 146-170 662-689 (876)
12 2xz9_A Phosphoenolpyruvate-pro 64.6 10 0.00034 32.8 5.4 34 129-162 62-117 (324)
13 2key_A Putative phage integras 63.3 4.7 0.00016 26.8 2.5 51 75-152 47-101 (112)
14 1z19_A Integrase; protein-DNA 63.1 13 0.00045 27.9 5.2 65 57-152 27-93 (283)
15 3zq7_A KDP operon transcriptio 62.5 3.8 0.00013 28.3 1.9 21 126-146 67-87 (102)
16 1tac_A TAT protein; transcript 62.1 3.1 0.00011 31.4 1.6 15 167-181 39-53 (86)
17 2wqd_A Phosphoenolpyruvate-pro 60.4 10 0.00035 35.5 5.0 42 128-169 312-377 (572)
18 2z9m_A Response regulator YYCF 59.6 4.2 0.00014 29.3 1.8 21 126-146 75-95 (120)
19 3mi9_C Protein TAT; P-TEFB, HI 58.4 2.2 7.4E-05 32.3 0.1 16 166-181 38-53 (86)
20 1kbl_A PPDK, pyruvate phosphat 57.8 7.1 0.00024 38.5 3.6 25 146-170 655-682 (873)
21 2kiw_A INT protein; alpha, str 56.7 38 0.0013 22.1 6.3 50 75-152 39-91 (111)
22 2kd1_A DNA integration/recombi 56.1 23 0.00078 23.5 5.0 52 74-152 45-99 (118)
23 2hwg_A Phosphoenolpyruvate-pro 54.1 12 0.00041 35.1 4.4 35 128-162 310-366 (575)
24 2kj8_A Putative prophage CPS-5 52.9 49 0.0017 22.2 6.6 51 75-152 45-97 (118)
25 2pk2_A Cyclin-T1, protein TAT; 52.2 3 0.0001 36.2 0.0 6 169-175 327-332 (358)
26 2kkv_A Integrase; protein stru 50.7 53 0.0018 22.0 7.4 51 74-152 45-98 (121)
27 3rjp_A COVR; winged helix-turn 49.8 8.1 0.00028 26.3 1.9 18 126-143 61-78 (96)
28 2k4j_A Putative transcriptiona 43.3 18 0.00061 26.1 3.0 21 125-145 79-99 (115)
29 1h6z_A Pyruvate phosphate diki 41.8 22 0.00074 35.5 4.2 37 127-170 670-709 (913)
30 2hqn_A Putative transcriptiona 40.3 13 0.00044 25.9 1.8 20 126-145 68-87 (109)
31 2kj5_A Phage integrase; GFT PS 40.1 61 0.0021 21.2 5.1 49 76-152 47-98 (116)
32 1opc_A OMPR, OMPRC; transcript 39.2 13 0.00043 26.0 1.6 20 126-145 70-89 (110)
33 1z1b_A Integrase; protein-DNA 37.8 53 0.0018 25.8 5.2 62 60-152 103-166 (356)
34 2kob_A Uncharacterized protein 37.2 54 0.0018 21.0 4.3 29 124-152 62-92 (108)
35 2khv_A Phage integrase; soluti 37.0 88 0.003 20.6 5.7 51 73-152 40-94 (106)
36 1gxq_A PHOB, phosphate regulon 36.8 18 0.00062 25.1 2.1 20 125-144 69-88 (106)
37 2a25_A Ubiquitin ligase SIAH1; 36.3 7.3 0.00025 31.1 -0.0 34 98-138 25-62 (193)
38 1h1j_S THO1 protein; SAP domai 36.1 25 0.00087 23.5 2.6 25 126-150 26-50 (51)
39 2kzy_A ZNF216-A20, zfand5 prot 34.6 20 0.00067 25.5 1.9 21 99-119 14-34 (62)
40 3a2a_A Voltage-gated hydrogen 34.4 17 0.0006 25.7 1.6 22 128-149 37-58 (58)
41 2hwv_A DNA-binding response re 33.1 19 0.00064 26.2 1.7 20 126-145 82-101 (121)
42 2pjp_A Selenocysteine-specific 30.2 21 0.00072 25.8 1.6 38 61-99 68-111 (121)
43 2c7n_A Rabex-5, GEF 1, RAB gua 29.8 18 0.00061 26.6 1.1 23 100-122 18-40 (74)
44 3q9v_A DNA-binding response re 29.6 37 0.0013 25.2 2.8 19 126-144 99-117 (133)
45 2e1f_A Werner syndrome ATP-dep 28.1 41 0.0014 24.6 2.9 23 153-175 14-36 (103)
46 4a8e_A XER A, probable tyrosin 27.5 96 0.0033 23.3 4.9 52 57-143 33-84 (292)
47 2dkz_A Hypothetical protein LO 27.3 30 0.001 25.8 2.0 21 72-92 10-30 (84)
48 2kj9_A Integrase; DNA_BRE_C su 26.9 1.2E+02 0.0041 20.6 4.9 49 76-151 51-101 (118)
49 3qfs_A CPR, P450R, NADPH--cyto 25.9 35 0.0012 30.7 2.5 45 81-125 108-152 (458)
50 1am7_A Lysozyme; glycosidase, 25.2 43 0.0015 26.9 2.7 17 129-145 136-152 (158)
51 4b4t_W RPN10, 26S proteasome r 24.8 15 0.00053 31.1 0.0 41 137-177 213-253 (268)
52 2k6l_A Putative uncharacterize 24.2 56 0.0019 22.5 2.7 35 129-163 12-48 (51)
53 2osa_A N-chimaerin; RHO-GAP, G 23.7 61 0.0021 25.1 3.2 35 130-164 53-94 (202)
54 1v5r_A Growth-arrest-specific 22.7 13 0.00046 28.4 -0.7 14 60-73 63-76 (97)
55 4fxe_A Antitoxin RELB; toxin/a 22.6 1.2E+02 0.004 21.5 4.3 36 131-176 12-47 (79)
56 2lna_A AFG3-like protein 2; st 22.5 66 0.0023 23.4 3.0 27 121-147 60-86 (99)
57 2lep_A Rhomboid protease GLPG 28.1 18 0.00063 24.7 0.0 22 148-177 8-29 (69)
58 2rhf_A DNA helicase RECQ; HRDC 21.9 65 0.0022 21.6 2.7 22 154-175 5-26 (77)
59 1yx4_A 26S proteasome non-ATPa 21.7 35 0.0012 27.3 1.5 32 141-172 31-62 (132)
60 3tfg_A ALR2278 protein; heme-b 21.6 27 0.00093 27.4 0.8 81 58-143 64-157 (189)
61 3oj3_I Tumor necrosis factor a 21.6 25 0.00086 24.1 0.5 21 98-118 19-39 (49)
62 2l4d_A SCO1/SENC family protei 21.3 45 0.0015 22.1 1.8 31 70-100 74-104 (110)
63 4fdi_A N-acetylgalactosamine-6 21.3 50 0.0017 28.7 2.5 18 127-144 234-251 (502)
64 2gpe_A Bifunctional protein PU 21.1 49 0.0017 20.5 1.8 35 129-165 12-46 (52)
65 3iug_A RHO/CDC42/RAC GTPase-ac 20.5 1.1E+02 0.0038 24.2 4.2 34 130-164 65-106 (229)
66 3qe2_A CPR, P450R, NADPH--cyto 20.4 49 0.0017 30.5 2.4 46 81-126 268-313 (618)
No 1
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=91.97 E-value=0.43 Score=36.59 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=53.0
Q ss_pred HhhhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHH
Q 046561 55 NQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGR 134 (204)
Q Consensus 55 sQKRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGR 134 (204)
..-+++|+.|..|+.... +.+...+..||.+|+.++-..| .+..++...+..
T Consensus 24 ~~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~ 75 (324)
T 1xo0_A 24 KMLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQ 75 (324)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHH
Confidence 345678899999998763 2456678999999999875322 255788999999
Q ss_pred HHHHHHHhCCC-CCCCccch
Q 046561 135 LRAAFEENGGK-PEANPFGA 153 (204)
Q Consensus 135 LRAafEE~Gg~-pE~NPF~a 153 (204)
|++.|+-.+.. +..||+..
T Consensus 76 l~~~~~~~~~~~~~~np~~~ 95 (324)
T 1xo0_A 76 LNMLHRRSGLPRPSDSNAVS 95 (324)
T ss_dssp HHHHHHHHTSCCGGGSHHHH
T ss_pred HHHHHHHcCCCCCCcCHHHH
Confidence 99999988653 35688754
No 2
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=85.48 E-value=2.9 Score=28.86 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=47.3
Q ss_pred hhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 046561 57 KRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLR 136 (204)
Q Consensus 57 KRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLR 136 (204)
-+++++.|..||.... -..+...+..||.+|+.|+-..| .+..|+-..+.-||
T Consensus 32 Y~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~~--------------------------~s~~Ti~~~ls~lr 84 (117)
T 3nrw_A 32 FRYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGSD--------------------------VSPATLNGEMQTLK 84 (117)
T ss_dssp HHHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTSS--------------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHH
Confidence 3568888899987632 12566778899999998874311 24567788888888
Q ss_pred HHHHHh--CCCCCCCccc
Q 046561 137 AAFEEN--GGKPEANPFG 152 (204)
Q Consensus 137 AafEE~--Gg~pE~NPF~ 152 (204)
+.|.-. -|--+.||+.
T Consensus 85 ~f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 85 NWLEYLARIDVVDEDLPE 102 (117)
T ss_dssp HHHHHHHHTTSSCTTSGG
T ss_pred HHHHHHHHcCCcccCHHH
Confidence 888743 2445688874
No 3
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=81.94 E-value=3.8 Score=30.88 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=48.1
Q ss_pred HhhhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHH
Q 046561 55 NQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGR 134 (204)
Q Consensus 55 sQKRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGR 134 (204)
..-++.++.|..|+... .+.+...+..||.+|+.++-.. ..+..++...+.-
T Consensus 25 ~~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~ 76 (290)
T 1a0p_A 25 NAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSA 76 (290)
T ss_dssp HHHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHH
Confidence 34456788899999887 3467778899999999876421 1245678888999
Q ss_pred HHHHHHHhC--CCCCCCccc
Q 046561 135 LRAAFEENG--GKPEANPFG 152 (204)
Q Consensus 135 LRAafEE~G--g~pE~NPF~ 152 (204)
|+++|+..- +..+.|||.
T Consensus 77 l~~~~~~~~~~~~i~~np~~ 96 (290)
T 1a0p_A 77 VRRLFQYLYREKFREDDPSA 96 (290)
T ss_dssp HHHHHHHHHHTTSSSSCTTS
T ss_pred HHHHHHHHHhCCCccCChhh
Confidence 999988542 345678985
No 4
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=78.62 E-value=1.7 Score=41.89 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCC-------------------------CCCcc-chhhHHHHHH----HHhhHHHhh
Q 046561 132 IGRLRAAFEENGGKP-------------------------EANPF-GARAVRLYLR----EVRDVQSKA 170 (204)
Q Consensus 132 IGRLRAafEE~Gg~p-------------------------E~NPF-~araVRlYLR----eVRd~QAkA 170 (204)
..-++.+++.++++| |.||| |.|.+|+||. |+=+.|.+|
T Consensus 561 ~~~~~~~~~~~~~~pv~iR~~D~~~~~~~~~~gg~~~~~~E~NP~lG~Rg~r~~~~~p~~~~~~~ql~A 629 (794)
T 2ols_A 561 AEGVATLAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFALECKA 629 (794)
T ss_dssp HHHHHHHHHHHTTSEEEEECCCCCHHHHHTSBTCGGGSCCCSCGGGSSCTHHHHHCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCchhhHHHhcCccccccccCCCcCccceeeeeccchhHHHHHHHHH
Confidence 356677778777764 78999 8999999998 555666554
No 5
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=74.60 E-value=7 Score=25.62 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=43.3
Q ss_pred hhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHH
Q 046561 59 RDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA 138 (204)
Q Consensus 59 rdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAa 138 (204)
+.++.|..|+.+ +.|..-+..||.+|+.++.+ ..+..++..+++.||++
T Consensus 30 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~~ 78 (110)
T 2khq_A 30 SAYKHIKDHFRH----KLLKDIKRTEYQKFLNEYGL---------------------------THSYETIRKLNSYIRNA 78 (110)
T ss_dssp HHHHHHHHHCSS----CBGGGCCHHHHHHHHHHHHH---------------------------HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CCHhhCCHHHHHHHHHHHHH---------------------------HhhHHHHHHHHHHHHHH
Confidence 344557777653 45667789999999987741 12446888999999999
Q ss_pred HHHh--CCCCCCCccc
Q 046561 139 FEEN--GGKPEANPFG 152 (204)
Q Consensus 139 fEE~--Gg~pE~NPF~ 152 (204)
|+-. -|--+.||+.
T Consensus 79 ~~~a~~~~~i~~NP~~ 94 (110)
T 2khq_A 79 FDDAIHEGYVIKNPTY 94 (110)
T ss_dssp HHHHHHTTCCCCCGGG
T ss_pred HHHHHHCCCcccCccc
Confidence 9742 1334689984
No 6
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=74.56 E-value=3.2 Score=40.75 Aligned_cols=24 Identities=42% Similarity=0.684 Sum_probs=20.3
Q ss_pred CCCcc-chhhHHHHHH--HHhhHHHhh
Q 046561 147 EANPF-GARAVRLYLR--EVRDVQSKA 170 (204)
Q Consensus 147 E~NPF-~araVRlYLR--eVRd~QAkA 170 (204)
|.||| |.|++|+||. |+=+.|.+|
T Consensus 683 E~NPmLG~RGiR~~l~~peif~~Q~rA 709 (913)
T 2x0s_A 683 ELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CSSGGGSSCHHHHHHHSCHHHHHHHHH
T ss_pred CCChhhhccchhhhccCcHHHHHHHHH
Confidence 67999 9999999998 777777765
No 7
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=71.74 E-value=14 Score=23.03 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHH
Q 046561 59 RDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA 138 (204)
Q Consensus 59 rdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAa 138 (204)
..++.|..|+.+ +.|..-+..||.+|+.++...| +..++...+..||++
T Consensus 29 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~ 77 (103)
T 2oxo_A 29 SKIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDA 77 (103)
T ss_dssp HHHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CchhhCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHH
Confidence 445556666643 4566778999999998774211 236788899999999
Q ss_pred HHH---hCCCCCCCccc
Q 046561 139 FEE---NGGKPEANPFG 152 (204)
Q Consensus 139 fEE---~Gg~pE~NPF~ 152 (204)
|+- .|. -+.|||.
T Consensus 78 ~~~a~~~~~-i~~nP~~ 93 (103)
T 2oxo_A 78 FREAIAEGH-ITTNHVA 93 (103)
T ss_dssp HHHHHHTTS-CSSCTTC
T ss_pred HHHHHHcCC-CCCChHh
Confidence 874 344 4679985
No 8
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=69.63 E-value=11 Score=24.74 Aligned_cols=53 Identities=15% Similarity=0.101 Sum_probs=37.3
Q ss_pred CCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHhC--CCCCCCcc
Q 046561 74 PLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENG--GKPEANPF 151 (204)
Q Consensus 74 PlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAafEE~G--g~pE~NPF 151 (204)
-+.|..-+..||.+|+.++-..| .+..++...++.||++|+-.= |--+.||+
T Consensus 47 ~~~l~~It~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~~~~~~A~~~~~i~~nP~ 100 (117)
T 2kkp_A 47 SIPLKKLQPADIQRLYASKLESG--------------------------LSPTRVRYIHVVLHEAMSQARESGLLLQNPT 100 (117)
T ss_dssp TSCTTTCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHHHHHHHHTTTSCSSCGG
T ss_pred ceEHHHCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHCCCcccCcc
Confidence 35567778899999998764211 245688899999999997431 23457998
Q ss_pred c
Q 046561 152 G 152 (204)
Q Consensus 152 ~ 152 (204)
.
T Consensus 101 ~ 101 (117)
T 2kkp_A 101 E 101 (117)
T ss_dssp G
T ss_pred c
Confidence 4
No 9
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=69.30 E-value=3.2 Score=28.52 Aligned_cols=26 Identities=27% Similarity=0.685 Sum_probs=21.5
Q ss_pred cccCcccccCCCCCCCCCCCCCCCCC
Q 046561 93 DQFGKTKVHTPICPFYGHPNPPAPCP 118 (204)
Q Consensus 93 DqfGkTkVH~~~C~ffG~p~ppapC~ 118 (204)
|+.|-.|--..+|+|||.|.-..=|.
T Consensus 11 ~~~gt~kCRk~GC~fFGTpen~GFCT 36 (48)
T 2eqe_A 11 DRTGTSKCRKAGCVYFGTPENKGFCT 36 (48)
T ss_dssp SSCCSSBCSSTTCCSBCCTTTTTCCH
T ss_pred cccccchhhhcCCCcccCcccCceee
Confidence 67787888999999999998766664
No 10
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=66.12 E-value=2.6 Score=31.46 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCC
Q 046561 127 SLDALIGRLRAAFEENGGKPE 147 (204)
Q Consensus 127 SLDALIGRLRAafEE~Gg~pE 147 (204)
+||..|.|||..+++.++.|+
T Consensus 76 ~l~v~I~rLRkKL~~~~~~~~ 96 (120)
T 2zxj_A 76 TVDVTIRRLREKIEDDPSHPE 96 (120)
T ss_dssp HHHHHHHHHHHHHCSSTTSCS
T ss_pred ChHHHHHHHHHHHhhCCCCCC
Confidence 799999999999998876653
No 11
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=64.67 E-value=5.4 Score=39.31 Aligned_cols=25 Identities=40% Similarity=0.698 Sum_probs=21.7
Q ss_pred CCCCcc-chhhHHHHHH--HHhhHHHhh
Q 046561 146 PEANPF-GARAVRLYLR--EVRDVQSKA 170 (204)
Q Consensus 146 pE~NPF-~araVRlYLR--eVRd~QAkA 170 (204)
-|.||| |.|.+|+||. |+=++|.+|
T Consensus 662 ~E~NP~LG~RG~Rl~l~~peif~~QlrA 689 (876)
T 1vbg_A 662 SEVNPMLGFRGCRLGISYPELTEMQARA 689 (876)
T ss_dssp CCSCGGGSSCTHHHHHHSHHHHHHHHHH
T ss_pred cCCCCcccccccccccCChHHHHHHHHH
Confidence 589999 8999999998 787888776
No 12
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=64.57 E-value=10 Score=32.83 Aligned_cols=34 Identities=41% Similarity=0.764 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhCCCC---------------------CCCcc-chhhHHHHHHH
Q 046561 129 DALIGRLRAAFEENGGKP---------------------EANPF-GARAVRLYLRE 162 (204)
Q Consensus 129 DALIGRLRAafEE~Gg~p---------------------E~NPF-~araVRlYLRe 162 (204)
+...--++.+++..+++| |.||| |.|+||+||..
T Consensus 62 ~~q~~~~~~~~~~~~~~~v~VR~~d~g~dk~~~~~~~~~E~nP~LG~RgiR~~l~~ 117 (324)
T 2xz9_A 62 EEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPKEMNPFLGYRAIRLCLDR 117 (324)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEECCCCBGGGCCTTTCCCCCSCGGGSSBTHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCCCcchhhhhhccccccCcccccceeeeeccc
Confidence 444456677777766652 67998 99999999984
No 13
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=63.34 E-value=4.7 Score=26.77 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=36.7
Q ss_pred CccccCcchhHHHHHHhhcc-cCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCc
Q 046561 75 LSLSRCSGAHVLEFLRYLDQ-FGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---NGGKPEANP 150 (204)
Q Consensus 75 lsL~~csg~hVleFLrylDq-fGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAafEE---~Gg~pE~NP 150 (204)
+.|...+..+|.+|+.||-. .| .+-.|+...+.-||++|+- .|. -+.||
T Consensus 47 ~~l~~it~~~i~~~~~~l~~~~~--------------------------~s~~Ti~~~~~~lr~~~~~a~~~~~-i~~nP 99 (112)
T 2key_A 47 LQFHELTEDFLRDYLIYMKKTLC--------------------------NADSTAQRNLSTIKIYVSAAIKKGY-MENDP 99 (112)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTSC--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CCSCH
T ss_pred CCHHHcCHHHHHHHHHHHHHccC--------------------------cchhhHHHHHHHHHHHHHHHHHCCC-cccCC
Confidence 35667788999999998754 22 2346888999999999874 344 35688
Q ss_pred cc
Q 046561 151 FG 152 (204)
Q Consensus 151 F~ 152 (204)
|.
T Consensus 100 ~~ 101 (112)
T 2key_A 100 FK 101 (112)
T ss_dssp HH
T ss_pred cc
Confidence 74
No 14
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=63.14 E-value=13 Score=27.86 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=46.0
Q ss_pred hhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 046561 57 KRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLR 136 (204)
Q Consensus 57 KRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLR 136 (204)
-++.++.|..|+.+. .+..-+..||.+|+.++-..| +..++...+.-|+
T Consensus 27 y~~~~~~~~~~~~~~----~~~~i~~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~ 75 (283)
T 1z19_A 27 YMSKIKAIRRGLPDA----PLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLS 75 (283)
T ss_dssp HHHHHHHHHHHSCSC----BGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC----cHHhCCHHHHHHHHHHHhhcC---------------------------chhhHHHHHHHHH
Confidence 355677888888653 466778999999999875321 2357888899999
Q ss_pred HHHHHhC--CCCCCCccc
Q 046561 137 AAFEENG--GKPEANPFG 152 (204)
Q Consensus 137 AafEE~G--g~pE~NPF~ 152 (204)
++|+..- |.-+.|||.
T Consensus 76 ~~~~~a~~~~~i~~np~~ 93 (283)
T 1z19_A 76 DAFREAIAEGHITTNHVA 93 (283)
T ss_dssp HHHHHHHHTTSCSCCTTT
T ss_pred HHHHHHHHCCCCCcCchh
Confidence 9988531 334578874
No 15
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=62.51 E-value=3.8 Score=28.31 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 046561 126 GSLDALIGRLRAAFEENGGKP 146 (204)
Q Consensus 126 GSLDALIGRLRAafEE~Gg~p 146 (204)
.+||.+|.|||..+++.++.+
T Consensus 67 ~~l~~~I~rLRkkL~~~~~~~ 87 (102)
T 3zq7_A 67 HYLRIYMGHLRQKLEQDPARP 87 (102)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 479999999999998876543
No 16
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=62.15 E-value=3.1 Score=31.41 Aligned_cols=15 Identities=53% Similarity=0.831 Sum_probs=11.5
Q ss_pred HHhhhccchhhhhcC
Q 046561 167 QSKARGISYEKKKRK 181 (204)
Q Consensus 167 QAkARgi~y~kkkrk 181 (204)
+-|.-||+|-+|||+
T Consensus 39 ~~KGLGIsYgRkkRr 53 (86)
T 1tac_A 39 ITKGLGISYGRKKRR 53 (86)
T ss_dssp SSTTSSSSSCCCSGG
T ss_pred ccCCCceEecccccc
Confidence 458889999976653
No 17
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=60.36 E-value=10 Score=35.52 Aligned_cols=42 Identities=36% Similarity=0.555 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCcc-chhhHHHHHH--HHhhHHHh
Q 046561 128 LDALIGRLRAAFEENGGK---------------------PEANPF-GARAVRLYLR--EVRDVQSK 169 (204)
Q Consensus 128 LDALIGRLRAafEE~Gg~---------------------pE~NPF-~araVRlYLR--eVRd~QAk 169 (204)
.+...--++.+++.++|+ .|.||| |.|+||+||. ++=+.|.+
T Consensus 312 ~~~q~~~~~~~~~~~~g~pv~VR~lD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~~p~if~~Qlr 377 (572)
T 2wqd_A 312 EEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLSLAQQDIFRPQLR 377 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCCTTSCCTTSCCCCCSCGGGSSCHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCCCCccchhhccCcccCCchhhhhhhhhcccChHHHHHHHH
Confidence 455666677777777665 378998 8999999995 44444443
No 18
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=59.56 E-value=4.2 Score=29.25 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 046561 126 GSLDALIGRLRAAFEENGGKP 146 (204)
Q Consensus 126 GSLDALIGRLRAafEE~Gg~p 146 (204)
.+||.+|.|||..+++.++.+
T Consensus 75 ~~l~~~I~rLRkkL~~~~~~~ 95 (120)
T 2z9m_A 75 RTVDVTIRRLREKIEDDPSHP 95 (120)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 479999999999998766543
No 19
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=58.37 E-value=2.2 Score=32.30 Aligned_cols=16 Identities=56% Similarity=0.821 Sum_probs=9.7
Q ss_pred HHHhhhccchhhhhcC
Q 046561 166 VQSKARGISYEKKKRK 181 (204)
Q Consensus 166 ~QAkARgi~y~kkkrk 181 (204)
+.-|.-||+|.+|||+
T Consensus 38 Fl~KGLGIsYgRkkRr 53 (86)
T 3mi9_C 38 FITKALGISYGRKKRR 53 (86)
T ss_dssp HHHTTSCCCSCC----
T ss_pred hcccCCcccccccccc
Confidence 3468899999866653
No 20
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=57.84 E-value=7.1 Score=38.47 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=21.7
Q ss_pred CCCCcc-chhhHHHHHH--HHhhHHHhh
Q 046561 146 PEANPF-GARAVRLYLR--EVRDVQSKA 170 (204)
Q Consensus 146 pE~NPF-~araVRlYLR--eVRd~QAkA 170 (204)
-|.||| |.|.+|+||. |+=++|.+|
T Consensus 655 ~E~NP~LG~RG~Rl~l~~peif~~QlrA 682 (873)
T 1kbl_A 655 HEFNPMMGHRGCRLAVTYPEIAKMQTRA 682 (873)
T ss_dssp CCSCGGGSSCTHHHHHHCHHHHHHHHHH
T ss_pred cCCCCCcccceeccccCChHHHHHHHHH
Confidence 589999 8999999998 788888766
No 21
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=56.73 E-value=38 Score=22.08 Aligned_cols=50 Identities=10% Similarity=0.107 Sum_probs=36.3
Q ss_pred CccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCcc
Q 046561 75 LSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---NGGKPEANPF 151 (204)
Q Consensus 75 lsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAafEE---~Gg~pE~NPF 151 (204)
+.|..-+..||.+|+.++.+ +.+..++..++..||++|.- .|. -+.||+
T Consensus 39 ~~l~~It~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~lr~~~~~A~~~~~-i~~nP~ 90 (111)
T 2kiw_A 39 KPIQTIKKHDYQRFVDDISA---------------------------QYSKNYVDSIVASTNMIFKYAYDTRL-IKAMPS 90 (111)
T ss_dssp SCGGGCCHHHHHHHHHHHHT---------------------------TSCHHHHHHHHHHHHHHHHHHHHTTS-CSCCTT
T ss_pred CcHHHcCHHHHHHHHHHHHh---------------------------hhCHHHHHHHHHHHHHHHHHHHHhCC-hhhCcc
Confidence 45667789999999987741 12446888899999999874 343 468998
Q ss_pred c
Q 046561 152 G 152 (204)
Q Consensus 152 ~ 152 (204)
.
T Consensus 91 ~ 91 (111)
T 2kiw_A 91 E 91 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 22
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=56.14 E-value=23 Score=23.46 Aligned_cols=52 Identities=17% Similarity=0.290 Sum_probs=37.2
Q ss_pred CCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCc
Q 046561 74 PLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---NGGKPEANP 150 (204)
Q Consensus 74 PlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAafEE---~Gg~pE~NP 150 (204)
-+.|...+..||.+|+.++-..| .+..++...+..||++|+- .|. -+.||
T Consensus 45 ~~~l~~it~~~i~~~~~~l~~~g--------------------------~s~~t~~~~~~~l~~~~~~a~~~~~-i~~nP 97 (118)
T 2kd1_A 45 NIKLAKLTSLHMQNYVNSLRDEG--------------------------LKRGTIEKIIKVIRNSLEHAIDLEL-ITKNV 97 (118)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHHT--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CSSCT
T ss_pred cCCHHhCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHcCC-cccCc
Confidence 35677788999999998764311 2456888899999999874 343 45799
Q ss_pred cc
Q 046561 151 FG 152 (204)
Q Consensus 151 F~ 152 (204)
+.
T Consensus 98 ~~ 99 (118)
T 2kd1_A 98 AA 99 (118)
T ss_dssp TT
T ss_pred cc
Confidence 73
No 23
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=54.09 E-value=12 Score=35.10 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCcc-chhhHHHHHHH
Q 046561 128 LDALIGRLRAAFEENGGK---------------------PEANPF-GARAVRLYLRE 162 (204)
Q Consensus 128 LDALIGRLRAafEE~Gg~---------------------pE~NPF-~araVRlYLRe 162 (204)
.+...--++.+++.++|+ .|.||| |.|+||+||..
T Consensus 310 ~~~q~~~~~~~~~~~~g~pv~VRtlD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~~ 366 (575)
T 2hwg_A 310 EEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAIRIAMDR 366 (575)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCSSSCCCGGGCCCCCSCGGGSSCTHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEeCCCCCccchhhccCCCCCCccccchheeecccC
Confidence 455666677788877665 378998 99999999973
No 24
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=52.91 E-value=49 Score=22.21 Aligned_cols=51 Identities=22% Similarity=0.310 Sum_probs=35.8
Q ss_pred CccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCccc
Q 046561 75 LSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEN--GGKPEANPFG 152 (204)
Q Consensus 75 lsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAafEE~--Gg~pE~NPF~ 152 (204)
+.|..-+..||.+|+..+...| +..++..++.-||++|+-. -|--+.||+.
T Consensus 45 ~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~ 97 (118)
T 2kj8_A 45 LEIQDIEPMQLLEVIRRFEDRG---------------------------AMERANKARRRCGEVFRYAIVTGRAKYNPAP 97 (118)
T ss_dssp SBTTSCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSCSCCSHH
T ss_pred CcHHHCCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCcHH
Confidence 4566778899999998653211 3457888999999998742 2334689974
No 25
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=52.24 E-value=3 Score=36.19 Aligned_cols=6 Identities=50% Similarity=0.933 Sum_probs=0.0
Q ss_pred hhhccch
Q 046561 169 KARGISY 175 (204)
Q Consensus 169 kARgi~y 175 (204)
| -||.|
T Consensus 327 ~-~~~~~ 332 (358)
T 2pk2_A 327 S-LGIDY 332 (358)
T ss_dssp -------
T ss_pred c-cceee
Confidence 6 99999
No 26
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=50.67 E-value=53 Score=21.96 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=35.9
Q ss_pred CCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCc
Q 046561 74 PLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---NGGKPEANP 150 (204)
Q Consensus 74 PlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAafEE---~Gg~pE~NP 150 (204)
-+.|..-+..||.+|+..+...| +..++..++.-||++|+- .|. -+.||
T Consensus 45 ~~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~A~~~~~-i~~NP 96 (121)
T 2kkv_A 45 SSDIRQLKTSHLLAPIKEVDTSG---------------------------KHDVAQRLQQRVTAIMRYAVQNDY-IDSNP 96 (121)
T ss_dssp TSCTTCCCSGGGHHHHHHHHHTT---------------------------THHHHHHHHHHHHHHHHHHHHTTS-SCSCS
T ss_pred CCCHHHcCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHHHcCC-cccCc
Confidence 35567778899999998654211 345788899999999874 343 46899
Q ss_pred cc
Q 046561 151 FG 152 (204)
Q Consensus 151 F~ 152 (204)
+.
T Consensus 97 ~~ 98 (121)
T 2kkv_A 97 AS 98 (121)
T ss_dssp CS
T ss_pred HH
Confidence 74
No 27
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=49.82 E-value=8.1 Score=26.30 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHhC
Q 046561 126 GSLDALIGRLRAAFEENG 143 (204)
Q Consensus 126 GSLDALIGRLRAafEE~G 143 (204)
.+||.+|.|||..+++.|
T Consensus 61 ~~l~~~I~rLRkkL~~~~ 78 (96)
T 3rjp_A 61 NVVDVYIRYLRGKIDIPG 78 (96)
T ss_dssp HHHHHHHHHHHHHHCCTT
T ss_pred chHHHHHHHHHHHhcccC
Confidence 489999999999998776
No 28
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=43.28 E-value=18 Score=26.06 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=17.9
Q ss_pred cchhHHHHHHHHHHHHHhCCC
Q 046561 125 WGSLDALIGRLRAAFEENGGK 145 (204)
Q Consensus 125 wGSLDALIGRLRAafEE~Gg~ 145 (204)
-.+||.+|.|||..+++.+..
T Consensus 79 ~~tl~~~I~rLRkkL~~~~~~ 99 (115)
T 2k4j_A 79 NKSIDVIIGRLRSKIEKNPKQ 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHhhcCCCC
Confidence 358999999999999987654
No 29
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=41.75 E-value=22 Score=35.50 Aligned_cols=37 Identities=32% Similarity=0.510 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCCcc-chhhHHHHHH--HHhhHHHhh
Q 046561 127 SLDALIGRLRAAFEENGGKPEANPF-GARAVRLYLR--EVRDVQSKA 170 (204)
Q Consensus 127 SLDALIGRLRAafEE~Gg~pE~NPF-~araVRlYLR--eVRd~QAkA 170 (204)
+.|.++.++.. .-|.||| |.|++|++|. |+=++|.+|
T Consensus 670 ~~dk~~~~~~~-------~~E~NPmLG~RG~Rl~l~~peif~~QlrA 709 (913)
T 1h6z_A 670 PAEKVRNRVNA-------LHELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CHHHHHHHHHS-------SCCSSSTTSSCHHHHHHHSTTHHHHHHHH
T ss_pred CHHHHHhhhcC-------CCCCCCCCccchhccCCCChHHHHHHHHH
Confidence 46766665542 3689999 9999999996 566667665
No 30
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=40.25 E-value=13 Score=25.91 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 046561 126 GSLDALIGRLRAAFEENGGK 145 (204)
Q Consensus 126 GSLDALIGRLRAafEE~Gg~ 145 (204)
.+||.+|.|||..+++.++.
T Consensus 68 ~~l~~~I~rLRkkL~~~~~~ 87 (109)
T 2hqn_A 68 NVIEVAINQIRQKMDKPLGI 87 (109)
T ss_dssp THHHHHHHHHHHHTTTTSCC
T ss_pred chHHHHHHHHHHHhccccCC
Confidence 58999999999999876443
No 31
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=40.10 E-value=61 Score=21.22 Aligned_cols=49 Identities=16% Similarity=0.135 Sum_probs=33.7
Q ss_pred ccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCccc
Q 046561 76 SLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---NGGKPEANPFG 152 (204)
Q Consensus 76 sL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAafEE---~Gg~pE~NPF~ 152 (204)
.|..-+..||.+|+.++-.. .+..++..++..||++|+- .| --+.||+.
T Consensus 47 ~l~~it~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~~~~~A~~~~-~i~~NP~~ 98 (116)
T 2kj5_A 47 KVEDVKPRHIDDVLKAVMKR---------------------------GAPSIANDTLRWLKRMFNYAIKRH-IIEYNPAA 98 (116)
T ss_dssp BSSSCCHHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHHHHHHHTT-SCSSCGGG
T ss_pred cHhhCCHHHHHHHHHHHHHc---------------------------cChHHHHHHHHHHHHHHHHHHHcC-ccccCchh
Confidence 45566788899998766421 1345788889999999873 34 34679973
No 32
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=39.16 E-value=13 Score=26.03 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 046561 126 GSLDALIGRLRAAFEENGGK 145 (204)
Q Consensus 126 GSLDALIGRLRAafEE~Gg~ 145 (204)
.+||.+|.|||..+++.|..
T Consensus 70 ~~l~~~I~rLRkkL~~~~~~ 89 (110)
T 1opc_A 70 RSIDVQISRLRRMVEEDPAH 89 (110)
T ss_dssp SCHHHHHHHHHHHHCSCTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 57999999999999876643
No 33
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=37.78 E-value=53 Score=25.77 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=39.7
Q ss_pred hhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 046561 60 DWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAF 139 (204)
Q Consensus 60 dwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAaf 139 (204)
.++.|..||.+ +.|..-+..||.+|+.++-..| +..++...+..|+++|
T Consensus 103 ~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~~ 151 (356)
T 1z1b_A 103 KIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDAF 151 (356)
T ss_dssp HHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CcHHHCCHHHHHHHHHHHHHcc---------------------------cHHHHHHHHHHHHHHH
Confidence 34445555542 4466677888999988764321 2357788888999988
Q ss_pred HHh--CCCCCCCccc
Q 046561 140 EEN--GGKPEANPFG 152 (204)
Q Consensus 140 EE~--Gg~pE~NPF~ 152 (204)
+-. -+.-+.||+.
T Consensus 152 ~~a~~~~~i~~np~~ 166 (356)
T 1z1b_A 152 REAIAEGHITTNHVA 166 (356)
T ss_dssp HHHHHTTSCSSCTTT
T ss_pred HHHHHcCCcccChHh
Confidence 743 1334578874
No 34
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=37.24 E-value=54 Score=21.05 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=20.8
Q ss_pred hcchhHHHHHHHHHHHHHh--CCCCCCCccc
Q 046561 124 AWGSLDALIGRLRAAFEEN--GGKPEANPFG 152 (204)
Q Consensus 124 AwGSLDALIGRLRAafEE~--Gg~pE~NPF~ 152 (204)
+..++..++..||++|+-. -|--+.||+.
T Consensus 62 s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~ 92 (108)
T 2kob_A 62 AKNTLKAIRNTASQIFRLAIENRAIDFNPAD 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSSSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCccc
Confidence 4467888999999998742 2334689984
No 35
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=37.04 E-value=88 Score=20.57 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCC-
Q 046561 73 PPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---NGGKPEA- 148 (204)
Q Consensus 73 PPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAafEE---~Gg~pE~- 148 (204)
.-+.|..-+..||.+|+..+-..| + .++..+...|+++|+. .|. -+.
T Consensus 40 G~~~l~~It~~~i~~~~~~l~~~~---------------------------~-~t~~~~~~~l~~i~~~Av~~~~-i~~~ 90 (106)
T 2khv_A 40 GPLSVQDVDTKLIMKVLDPIWEQK---------------------------P-ETASRLRGRIESVLDWATVRGY-REGD 90 (106)
T ss_dssp TTSBSSSCCHHHHHHHHHHHHHHC---------------------------H-HHHHHHHHHHHHHHHHHHHHTS-SCSC
T ss_pred CCccHHHcCHHHHHHHHHHHHHhC---------------------------h-HHHHHHHHHHHHHHHHHHHcCC-cCCC
Confidence 456677788999999987432111 2 5788889999999874 354 356
Q ss_pred Cccc
Q 046561 149 NPFG 152 (204)
Q Consensus 149 NPF~ 152 (204)
||+.
T Consensus 91 NP~~ 94 (106)
T 2khv_A 91 NPAR 94 (106)
T ss_dssp CTTS
T ss_pred CchH
Confidence 9974
No 36
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=36.76 E-value=18 Score=25.09 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=16.9
Q ss_pred cchhHHHHHHHHHHHHHhCC
Q 046561 125 WGSLDALIGRLRAAFEENGG 144 (204)
Q Consensus 125 wGSLDALIGRLRAafEE~Gg 144 (204)
-.+||.+|.|||..+++.|.
T Consensus 69 ~~~l~~~I~rLRkkL~~~~~ 88 (106)
T 1gxq_A 69 DRTVDVHIRRLRKALEPGGH 88 (106)
T ss_dssp THHHHHHHHHHHHHHGGGTG
T ss_pred cccHHHHHHHHHHHhcccCC
Confidence 35899999999999987653
No 37
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=36.33 E-value=7.3 Score=31.06 Aligned_cols=34 Identities=35% Similarity=0.639 Sum_probs=16.9
Q ss_pred ccccCCCCCCCCCCCCCCCCCCchh----hhcchhHHHHHHHHHH
Q 046561 98 TKVHTPICPFYGHPNPPAPCPCPLR----QAWGSLDALIGRLRAA 138 (204)
Q Consensus 98 TkVH~~~C~ffG~p~ppapC~CPlR----QAwGSLDALIGRLRAa 138 (204)
-..|...|.|. ||.||.. .--|+++.|..-|+..
T Consensus 25 ~~~He~~C~f~-------p~~Cp~~g~~C~~~G~~~~l~~H~~~~ 62 (193)
T 2a25_A 25 KADHEELCEFR-------PYSCPCPGASCKWQGSLDAVMPHLMHQ 62 (193)
T ss_dssp ------------------CEECCCC--CCCCEECSTTHHHHHHHH
T ss_pred ccchhhcCCCC-------CccCCCCCCCCcCCCCHHHHHHHHHHH
Confidence 34699999775 7777763 2238999999999863
No 38
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=36.08 E-value=25 Score=23.52 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCCc
Q 046561 126 GSLDALIGRLRAAFEENGGKPEANP 150 (204)
Q Consensus 126 GSLDALIGRLRAafEE~Gg~pE~NP 150 (204)
|.=..||-||.++.++.|+.++.-|
T Consensus 26 G~KadLieRL~~~~~~~~~~~~~~p 50 (51)
T 1h1j_S 26 GLKNELVQRLIKDDEESKGESEVSP 50 (51)
T ss_dssp SSHHHHHHHHHHHHHHSCC------
T ss_pred CcHHHHHHHHHHHHHhccCCcccCC
Confidence 6667999999999999998877665
No 39
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=34.62 E-value=20 Score=25.49 Aligned_cols=21 Identities=29% Similarity=0.727 Sum_probs=17.1
Q ss_pred cccCCCCCCCCCCCCCCCCCC
Q 046561 99 KVHTPICPFYGHPNPPAPCPC 119 (204)
Q Consensus 99 kVH~~~C~ffG~p~ppapC~C 119 (204)
.+=..+|.|||.|..-..|.-
T Consensus 14 ~lC~ngCGFfGnpaT~nlCSk 34 (62)
T 2kzy_A 14 MLCSTGCGFYGNPRTNGMCSV 34 (62)
T ss_dssp CBCTTCCSSBCCTTTTSCCHH
T ss_pred cchhhCCCCcCChhhcCcCHH
Confidence 355789999999998888863
No 40
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=34.45 E-value=17 Score=25.70 Aligned_cols=22 Identities=27% Similarity=0.297 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCC
Q 046561 128 LDALIGRLRAAFEENGGKPEAN 149 (204)
Q Consensus 128 LDALIGRLRAafEE~Gg~pE~N 149 (204)
-|-=|+||++.+.+||.-+|-|
T Consensus 37 ~eQEieRL~~LLkqHgl~~e~~ 58 (58)
T 3a2a_A 37 KEQEIERLNKLLRQHGLLGEVN 58 (58)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCcccCC
Confidence 4667999999999999887754
No 41
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=33.14 E-value=19 Score=26.20 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 046561 126 GSLDALIGRLRAAFEENGGK 145 (204)
Q Consensus 126 GSLDALIGRLRAafEE~Gg~ 145 (204)
.+||.+|-|||..+++.|..
T Consensus 82 ~tl~~~I~rLRkkL~~~~~~ 101 (121)
T 2hwv_A 82 RTVDVTVRRLREKIEDSPSH 101 (121)
T ss_dssp HHHHHHHHHHHHHHCSSTTS
T ss_pred cHHHHHHHHHHHHHhhcCCC
Confidence 58999999999999876643
No 42
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=30.19 E-value=21 Score=25.83 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=27.6
Q ss_pred hhHHHHHHHhcCCCCccc------cCcchhHHHHHHhhcccCccc
Q 046561 61 WNTFGQYLKNHRPPLSLS------RCSGAHVLEFLRYLDQFGKTK 99 (204)
Q Consensus 61 wntf~qyL~n~rPPlsL~------~csg~hVleFLrylDqfGkTk 99 (204)
++.+.+|+..+ +.++++ --|-+-++-+|.|+|+.|-|+
T Consensus 68 ~~~l~~~~~~~-~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~Tr 111 (121)
T 2pjp_A 68 ANMIRDLDQEC-GSTCAADFRDRLGVGRKLAIQILEYFDRIGFTR 111 (121)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHC-CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeE
Confidence 45566666665 556655 356677888999999999996
No 43
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=29.80 E-value=18 Score=26.61 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=18.3
Q ss_pred ccCCCCCCCCCCCCCCCCCCchh
Q 046561 100 VHTPICPFYGHPNPPAPCPCPLR 122 (204)
Q Consensus 100 VH~~~C~ffG~p~ppapC~CPlR 122 (204)
+=..+|.|||.|..-..|.-=+|
T Consensus 18 lC~ngCGFfGnpaT~nlCSkCyr 40 (74)
T 2c7n_A 18 LCKKGCGYYGNPAWQGFCSKCWR 40 (74)
T ss_dssp CCTTCSSSCCCGGGTTCCHHHHH
T ss_pred hHHhCCCCCCChhhcCccHHHHH
Confidence 34569999999999999975554
No 44
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=29.56 E-value=37 Score=25.22 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 046561 126 GSLDALIGRLRAAFEENGG 144 (204)
Q Consensus 126 GSLDALIGRLRAafEE~Gg 144 (204)
.+||.+|.|||..+++.|.
T Consensus 99 ~~l~~~I~rLRkkL~~~~~ 117 (133)
T 3q9v_A 99 NVVDVHMANLRAKLRDLDG 117 (133)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 4799999999999998875
No 45
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=28.15 E-value=41 Score=24.60 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHhhHHHhhhccch
Q 046561 153 ARAVRLYLREVRDVQSKARGISY 175 (204)
Q Consensus 153 araVRlYLReVRd~QAkARgi~y 175 (204)
..++---|+..|...|+.+|||-
T Consensus 14 d~~l~~~L~~wR~~~A~~~~vP~ 36 (103)
T 2e1f_A 14 QIVLYGKLVEARQKHANKMDVPP 36 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 45777889999999999999984
No 46
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=27.48 E-value=96 Score=23.29 Aligned_cols=52 Identities=25% Similarity=0.220 Sum_probs=37.0
Q ss_pred hhhhhhHHHHHHHhcCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 046561 57 KRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLR 136 (204)
Q Consensus 57 KRrdwntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLR 136 (204)
-++.++.|..| +...+..||.+|+.++-..| .+..++...+..|+
T Consensus 33 y~~~l~~~~~~---------~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~ 77 (292)
T 4a8e_A 33 YTYYISKFFEE---------GHSPTARDALRFLAKLKRKG--------------------------YSTRSLNLVIQALK 77 (292)
T ss_dssp HHHHHHHHHHH---------TCCSSHHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHH
Confidence 34556666666 66778999999999886432 23457788888888
Q ss_pred HHHHHhC
Q 046561 137 AAFEENG 143 (204)
Q Consensus 137 AafEE~G 143 (204)
++|+...
T Consensus 78 ~~~~~a~ 84 (292)
T 4a8e_A 78 AYFKFEG 84 (292)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 8888653
No 47
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.26 E-value=30 Score=25.82 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.1
Q ss_pred CCCCccccCcchhHHHHHHhh
Q 046561 72 RPPLSLSRCSGAHVLEFLRYL 92 (204)
Q Consensus 72 rPPlsL~~csg~hVleFLryl 92 (204)
.||..|+.=|-.+|.+|||++
T Consensus 10 ~pP~dLs~lSv~EVs~~Lr~i 30 (84)
T 2dkz_A 10 QPPADLSGLSIEEVSKSLRFI 30 (84)
T ss_dssp CCCSCCSSCCHHHHHHHGGGT
T ss_pred CCchhhhhcCHHHHHHHHHHc
Confidence 699999999999999999854
No 48
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=26.95 E-value=1.2e+02 Score=20.56 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=32.3
Q ss_pred ccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCcc
Q 046561 76 SLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEN--GGKPEANPF 151 (204)
Q Consensus 76 sL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwGSLDALIGRLRAafEE~--Gg~pE~NPF 151 (204)
.|..-+..||.+||..+-..| +..++..+++.|+++|+-. -|--+.||+
T Consensus 51 ~l~~It~~~i~~~l~~l~~~~---------------------------~~~t~~~~~~~L~~if~~Av~~g~i~~NP~ 101 (118)
T 2kj9_A 51 DIAELDTGDLLVPIKKIEKLG---------------------------YLEIAMRVKQYATAIMRYAVQQKMIRFNPA 101 (118)
T ss_dssp BGGGCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSSSSCHH
T ss_pred CHHHCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCch
Confidence 455667888888887543211 2357888889999998742 233457886
No 49
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=25.93 E-value=35 Score=30.71 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=28.9
Q ss_pred cchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhc
Q 046561 81 SGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 125 (204)
Q Consensus 81 sg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAw 125 (204)
..+.|-+||..+.-.+.+.|-.....--.....|.||+|.+|++-
T Consensus 108 ~~~~V~~~l~~l~~~~d~~v~~~~~~~~~~~~~p~~~~~tl~~~l 152 (458)
T 3qfs_A 108 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTAL 152 (458)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEEESSTTCSCCCSSSSSEEHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEecCCCcccccCCCCCCCeeHHHHH
Confidence 356788899888777777765443221122344678888888764
No 50
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=25.20 E-value=43 Score=26.88 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhCCC
Q 046561 129 DALIGRLRAAFEENGGK 145 (204)
Q Consensus 129 DALIGRLRAafEE~Gg~ 145 (204)
+--+..|+++|+++||.
T Consensus 136 ~~~~~~l~~~y~~~gg~ 152 (158)
T 1am7_A 136 EHKADSLIAKFKEAGGT 152 (158)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHcCCc
Confidence 56667999999999974
No 51
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.78 E-value=15 Score=31.14 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHhCCCCCCCccchhhHHHHHHHHhhHHHhhhccchhh
Q 046561 137 AAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYEK 177 (204)
Q Consensus 137 AafEE~Gg~pE~NPF~araVRlYLReVRd~QAkARgi~y~k 177 (204)
..|-|+|..|+..|=-|-|+|+=|.|-|.-|.+.+.-.-++
T Consensus 213 ~~~~~~~~dp~~dpela~alr~s~eee~~rq~~~~~~~~~~ 253 (268)
T 4b4t_W 213 GTFMDFGVDPSMDPELAMALRLSMEEEQQRQERLRQQQQQQ 253 (268)
T ss_dssp -----------------------------------------
T ss_pred CcccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHhhccccc
Confidence 34567888999999999999999999998887776544443
No 52
>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV}
Probab=24.17 E-value=56 Score=22.55 Aligned_cols=35 Identities=29% Similarity=0.332 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCCC--CCCCccchhhHHHHHHHH
Q 046561 129 DALIGRLRAAFEENGGK--PEANPFGARAVRLYLREV 163 (204)
Q Consensus 129 DALIGRLRAafEE~Gg~--pE~NPF~araVRlYLReV 163 (204)
|.+=-+||...++.||. ..-.=|.-.|||+||-+.
T Consensus 12 ~d~d~~lR~~l~~~~G~rKGdlSkfVEeAvr~~lf~~ 48 (51)
T 2k6l_A 12 PDVDQSVRMFIAAQGGGRKGDLSRFIEDAVRAYLFER 48 (51)
T ss_dssp HHHHHHHHHHHHHHCSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHH
Confidence 34445799999999863 445568899999998764
No 53
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=23.67 E-value=61 Score=25.08 Aligned_cols=35 Identities=29% Similarity=0.550 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCCCC------CCcc-chhhHHHHHHHHh
Q 046561 130 ALIGRLRAAFEENGGKPE------ANPF-GARAVRLYLREVR 164 (204)
Q Consensus 130 ALIGRLRAafEE~Gg~pE------~NPF-~araVRlYLReVR 164 (204)
+-|-.||..|++.|...+ .++. .|.+++.||||.-
T Consensus 53 ~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flreLp 94 (202)
T 2osa_A 53 DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLP 94 (202)
T ss_dssp HHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHcCCCccCCCccccccHHHHHHHHHHHHHhCC
Confidence 457889999998764322 2332 6899999999864
No 54
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=22.71 E-value=13 Score=28.39 Aligned_cols=14 Identities=50% Similarity=1.142 Sum_probs=12.7
Q ss_pred hhhHHHHHHHhcCC
Q 046561 60 DWNTFGQYLKNHRP 73 (204)
Q Consensus 60 dwntf~qyL~n~rP 73 (204)
-|.||.+||..|.|
T Consensus 63 GW~~L~~yL~khdp 76 (97)
T 1v5r_A 63 GWETFAGYLLKHDP 76 (97)
T ss_dssp EEEEHHHHHHHHCH
T ss_pred cHHHHHHHHHHcCc
Confidence 39999999999988
No 55
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=22.59 E-value=1.2e+02 Score=21.55 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCCCCCCccchhhHHHHHHHHhhHHHhhhccchh
Q 046561 131 LIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDVQSKARGISYE 176 (204)
Q Consensus 131 LIGRLRAafEE~Gg~pE~NPF~araVRlYLReVRd~QAkARgi~y~ 176 (204)
|=-+--++|++.|-.+ .-|||+||+.|= +.+|||++
T Consensus 12 lK~~a~~v~~~lGl~~------s~Ai~~fl~~v~----~~~~iPF~ 47 (79)
T 4fxe_A 12 LKARSYAALEKMGVTP------SEALRLMLEYIA----DNERLPFK 47 (79)
T ss_dssp HHHHHHHHHHHHTCCH------HHHHHHHHHHHH----HHSSCSSC
T ss_pred HHHHHHHHHHHhCCCH------HHHHHHHHHHHH----HhCCCCCc
Confidence 3344567888889874 579999998874 44788875
No 56
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=22.46 E-value=66 Score=23.39 Aligned_cols=27 Identities=26% Similarity=0.234 Sum_probs=23.6
Q ss_pred hhhhcchhHHHHHHHHHHHHHhCCCCC
Q 046561 121 LRQAWGSLDALIGRLRAAFEENGGKPE 147 (204)
Q Consensus 121 lRQAwGSLDALIGRLRAafEE~Gg~pE 147 (204)
..-.-||+|.+--+|++|=+|+|..|+
T Consensus 60 ~~f~IGSvd~FE~~Le~aQ~el~i~~~ 86 (99)
T 2lna_A 60 VWFNIGSVDTFERNLETLQQELGIEGE 86 (99)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTCCTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHcCCCcc
Confidence 355669999999999999999998876
No 57
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=28.05 E-value=18 Score=24.74 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.4
Q ss_pred CCccchhhHHHHHHHHhhHHHhhhccchhh
Q 046561 148 ANPFGARAVRLYLREVRDVQSKARGISYEK 177 (204)
Q Consensus 148 ~NPF~araVRlYLReVRd~QAkARgi~y~k 177 (204)
.||..|.++..||+. +||..+=
T Consensus 8 ~N~~~Aq~f~dyL~s--------~gI~~~v 29 (69)
T 2lep_A 8 ANPRVAQAFVDYMAT--------QGVILTI 29 (69)
Confidence 799999999999986 6776654
No 58
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=21.91 E-value=65 Score=21.64 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=18.8
Q ss_pred hhHHHHHHHHhhHHHhhhccch
Q 046561 154 RAVRLYLREVRDVQSKARGISY 175 (204)
Q Consensus 154 raVRlYLReVRd~QAkARgi~y 175 (204)
.++---|++.|+..|+.++||-
T Consensus 5 ~~l~~~L~~wR~~~A~~~~vpp 26 (77)
T 2rhf_A 5 ADLSEALRELRRELMKETGYSA 26 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCc
Confidence 4566779999999999999984
No 59
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=21.72 E-value=35 Score=27.31 Aligned_cols=32 Identities=34% Similarity=0.381 Sum_probs=28.4
Q ss_pred HhCCCCCCCccchhhHHHHHHHHhhHHHhhhc
Q 046561 141 ENGGKPEANPFGARAVRLYLREVRDVQSKARG 172 (204)
Q Consensus 141 E~Gg~pE~NPF~araVRlYLReVRd~QAkARg 172 (204)
|+|..|+..|=-+-|+|+-|.|.|.-|.++..
T Consensus 31 efgvDp~~DPeLa~ALr~Smeee~~Rqe~~~~ 62 (132)
T 1yx4_A 31 EFGVDPSADPELALALRVSMEEQRQRQEEEAR 62 (132)
T ss_dssp CSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHHHHHHhHHHHHHHHHHHHH
Confidence 67889999999999999999999998876643
No 60
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=21.56 E-value=27 Score=27.42 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=46.8
Q ss_pred hhhhhHHHHHHHh---cCCCCccccCcchhHHHHHHhhcccCcccccCCCCCCCCCCCCC-CCCCCc----hhhhc----
Q 046561 58 RRDWNTFGQYLKN---HRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPP-APCPCP----LRQAW---- 125 (204)
Q Consensus 58 Rrdwntf~qyL~n---~rPPlsL~~csg~hVleFLrylDqfGkTkVH~~~C~ffG~p~pp-apC~CP----lRQAw---- 125 (204)
...|..|++|+-. ....-.+.++.|.+..+||..+|. ||..-=..|....+| .-|.-- +..-+
T Consensus 64 ~~ll~~fG~~~~~~~~~~~y~~~l~~~g~~l~dFL~~ld~-----lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y~S~R 138 (189)
T 3tfg_A 64 EEWWIAFGEYWVTYTSEEGYGELLASAGDSLPEFMENLDN-----LHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTR 138 (189)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHTCSSHHHHHHHHHH-----HHHHHHHHSTTCCCCEEEEEEEETTEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHhhhhhcHHHHHhcCCCHHHHHHhHHH-----HHHHHHHhCCCCCCCeEEEEECCCCEEEEEEECCC
Confidence 4569999999865 333446677889999999998764 443322222222221 112100 01111
Q ss_pred -chhHHHHHHHHHHHHHhC
Q 046561 126 -GSLDALIGRLRAAFEENG 143 (204)
Q Consensus 126 -GSLDALIGRLRAafEE~G 143 (204)
|=.+-++|-|+++-+-.|
T Consensus 139 ~gl~~~~~Gli~~~A~~f~ 157 (189)
T 3tfg_A 139 CGLAPMVLGLLHGLGKRFQ 157 (189)
T ss_dssp SSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 456778888888877554
No 61
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=21.56 E-value=25 Score=24.14 Aligned_cols=21 Identities=24% Similarity=0.678 Sum_probs=15.5
Q ss_pred ccccCCCCCCCCCCCCCCCCC
Q 046561 98 TKVHTPICPFYGHPNPPAPCP 118 (204)
Q Consensus 98 TkVH~~~C~ffG~p~ppapC~ 118 (204)
..--..+|.|||.|..-.-|.
T Consensus 19 ~lC~~ngCGFfG~p~t~n~CS 39 (49)
T 3oj3_I 19 SKCRKAGCVYFGTPENKGFCT 39 (49)
T ss_dssp CBCSSTTCSSBCBGGGTTBCH
T ss_pred cccccCCCCCccCcccCCcch
Confidence 344458999999998776664
No 62
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=21.27 E-value=45 Score=22.14 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=17.9
Q ss_pred hcCCCCccccCcchhHHHHHHhhcccCcccc
Q 046561 70 NHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 100 (204)
Q Consensus 70 n~rPPlsL~~csg~hVleFLrylDqfGkTkV 100 (204)
...|+..|..=--++|++||+.+.......|
T Consensus 74 ~~Mp~~~Ls~~ei~~l~~yl~~~~~~~~~~~ 104 (110)
T 2l4d_A 74 LAMPNMRLGDAEVSALISYLEEETARLQTPV 104 (110)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCS
T ss_pred CcCCCCCCCHHHHHHHHHHHHHcccccCccc
Confidence 3678776654445566777766554333333
No 63
>4fdi_A N-acetylgalactosamine-6-sulfatase; glycoprotein, enzyme replacement therapy, formylg N-linked glycosylation, lysosomal enzyme, hydrolase; HET: NAG CIT; 2.20A {Homo sapiens} PDB: 4fdj_A*
Probab=21.27 E-value=50 Score=28.68 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHhCC
Q 046561 127 SLDALIGRLRAAFEENGG 144 (204)
Q Consensus 127 SLDALIGRLRAafEE~Gg 144 (204)
.+|..||||-.+++|.|-
T Consensus 234 ~~D~~vG~il~~L~~~gl 251 (502)
T 4fdi_A 234 EIDDSIGKILELLQDLHV 251 (502)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 589999999999999764
No 64
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=21.08 E-value=49 Score=20.50 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccchhhHHHHHHHHhh
Q 046561 129 DALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRD 165 (204)
Q Consensus 129 DALIGRLRAafEE~Gg~pE~NPF~araVRlYLReVRd 165 (204)
|.|+-+|-+.-+..|+. .+=+...||+.||.+..+
T Consensus 12 ~~l~~~l~~lA~~~~rs--~s~lir~Ai~~yl~~~e~ 46 (52)
T 2gpe_A 12 DATRERIKSAATRIDRT--PHWLIKQAIFSYLEQLEN 46 (52)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHh
Confidence 67888999999999874 455788899999986543
No 65
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=20.49 E-value=1.1e+02 Score=24.15 Aligned_cols=34 Identities=32% Similarity=0.635 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhCCCCC--CCcc------chhhHHHHHHHHh
Q 046561 130 ALIGRLRAAFEENGGKPE--ANPF------GARAVRLYLREVR 164 (204)
Q Consensus 130 ALIGRLRAafEE~Gg~pE--~NPF------~araVRlYLReVR 164 (204)
+-|-+||..|+. |..+. .+++ .+.+++.||||.-
T Consensus 65 ~~i~~L~~~~~~-~~~~~~~~~~~~~dvh~va~lLK~fLreLP 106 (229)
T 3iug_A 65 SNIQRLRHEFDS-EHVPDLTKEPYVQDIHSVGSLCKLYFRELP 106 (229)
T ss_dssp HHHHHHHHHHHT-TCCCCTTSTTTTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhc-CCCCCccccccccchHHHHHHHHHHHHHCC
Confidence 457889999986 33332 2222 6889999999953
No 66
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=20.44 E-value=49 Score=30.49 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=29.1
Q ss_pred cchhHHHHHHhhcccCcccccCCCCCCCCCCCCCCCCCCchhhhcc
Q 046561 81 SGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWG 126 (204)
Q Consensus 81 sg~hVleFLrylDqfGkTkVH~~~C~ffG~p~ppapC~CPlRQAwG 126 (204)
..+.|-+||..+.-.+.+.|......--.....|.||+|.+|++.-
T Consensus 268 ~~~~V~~~l~~l~l~~d~~v~~~~~~~~~~~~~~~p~~~tl~~~l~ 313 (618)
T 3qe2_A 268 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTALT 313 (618)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEEESCTTCSCCSSSSSSEEHHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEEecCCccccCCCCCCCceEHHHhhh
Confidence 3567888998887777776654332211223456788998887643
Done!