BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046562
         (180 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KL9|A Chain A, Crystal Structure Of Pepa From Streptococcus Pneumoniae
 pdb|3KL9|B Chain B, Crystal Structure Of Pepa From Streptococcus Pneumoniae
 pdb|3KL9|C Chain C, Crystal Structure Of Pepa From Streptococcus Pneumoniae
 pdb|3KL9|D Chain D, Crystal Structure Of Pepa From Streptococcus Pneumoniae
 pdb|3KL9|E Chain E, Crystal Structure Of Pepa From Streptococcus Pneumoniae
 pdb|3KL9|F Chain F, Crystal Structure Of Pepa From Streptococcus Pneumoniae
 pdb|3KL9|G Chain G, Crystal Structure Of Pepa From Streptococcus Pneumoniae
 pdb|3KL9|H Chain H, Crystal Structure Of Pepa From Streptococcus Pneumoniae
 pdb|3KL9|I Chain I, Crystal Structure Of Pepa From Streptococcus Pneumoniae
 pdb|3KL9|J Chain J, Crystal Structure Of Pepa From Streptococcus Pneumoniae
 pdb|3KL9|K Chain K, Crystal Structure Of Pepa From Streptococcus Pneumoniae
 pdb|3KL9|L Chain L, Crystal Structure Of Pepa From Streptococcus Pneumoniae
          Length = 355

 Score = 26.9 bits (58), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 50  TSAITVAGKDGPTSHILRFGTIAVVDDAVTEGP----TIDSKQIGRAQGIYVNSQLDGKA 105
           T    V+G + P    LR      VD+ VT+G      I   +   A  + V S +D   
Sbjct: 13  TELAAVSGHEAPVRAYLREKLTPHVDEVVTDGLGGIFGIKHSEAVDAPRVLVASHMD--E 70

Query: 106 LYMAFSLIFTDGEFKGSTLEIQGSDIFAMKQREFGVVSGTGH 147
           +    S I  DG F+   +EI G +   +  + F +++  GH
Sbjct: 71  VGFMVSEIKPDGTFR--VVEIGGWNPMVVSSQRFKLLTRDGH 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,950,497
Number of Sequences: 62578
Number of extensions: 200042
Number of successful extensions: 511
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 5
length of query: 180
length of database: 14,973,337
effective HSP length: 93
effective length of query: 87
effective length of database: 9,153,583
effective search space: 796361721
effective search space used: 796361721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)