BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046562
         (180 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 17/143 (11%)

Query: 28  PRQEAKETNLVLYVHD-YFTGRD----TSAITVAG------KDGPTSHILRFGTIAVVDD 76
           P +  K  NLV Y HD  + G++    TSAI  A       K  P SH   FG I V DD
Sbjct: 27  PYKPCK--NLVFYFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSH---FGNIIVFDD 81

Query: 77  AVTEGPTIDSKQIGRAQGIYVNSQLDGKALYMAFSLIFTDGEFKGSTLEIQGSDIFAMKQ 136
            +T   ++ SKQ+GRAQG Y+    +    +++F+ +      +G T+   G+D    K 
Sbjct: 82  PITLSHSLSSKQVGRAQGFYIYDTKNTYTSWLSFTFVLNSTHHQG-TITFAGADPIVAKT 140

Query: 137 REFGVVSGTGHFRFVKGYGIMET 159
           R+  V  GTG F   +G   + T
Sbjct: 141 RDISVTGGTGDFFMHRGIATITT 163


>sp|A1APP8|SYN_PELPD Asparagine--tRNA ligase OS=Pelobacter propionicus (strain DSM 2379)
           GN=asnS PE=3 SV=1
          Length = 459

 Score = 32.3 bits (72), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 36  NLVLYVHDYFTGRDTSAITVAGKDGPTSHILRFGTIAVVDDAVTEG-PTIDSKQIGRAQG 94
           N  LYVH       T  IT +  +G    + R  T+      + EG P       G+  G
Sbjct: 149 NNFLYVH-------TPIITASDCEG-AGELFRVTTLDAASPPLLEGRPDFGQDFFGQKTG 200

Query: 95  IYVNSQLDGKALYMAFSLIFTDG 117
           + V+ QL+G+   +AFS I+T G
Sbjct: 201 LTVSGQLEGELFALAFSDIYTFG 223


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.140    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,359,519
Number of Sequences: 539616
Number of extensions: 2672274
Number of successful extensions: 5889
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5886
Number of HSP's gapped (non-prelim): 7
length of query: 180
length of database: 191,569,459
effective HSP length: 110
effective length of query: 70
effective length of database: 132,211,699
effective search space: 9254818930
effective search space used: 9254818930
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)