Query 046562
Match_columns 180
No_of_seqs 131 out of 548
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 23:37:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.8 2E-07 6.8E-12 74.1 14.6 101 66-178 43-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.6 2.1E-06 7.2E-11 68.5 15.9 127 28-162 11-144 (195)
3 3h6j_A Neuraminidase, sialidas 28.1 54 0.0018 27.5 3.9 56 102-159 371-436 (438)
4 2ooj_A Hypothetical protein; s 25.3 2.1E+02 0.0072 21.2 12.0 84 86-177 41-133 (141)
5 2krs_A Probable enterotoxin; a 18.3 61 0.0021 20.9 2.0 17 77-93 12-28 (74)
6 2kt8_A Probable surface protei 16.6 92 0.0032 20.2 2.5 16 77-92 14-29 (76)
7 2e56_A Lymphocyte antigen 96; 15.3 3.8E+02 0.013 20.1 6.0 42 137-180 99-140 (144)
8 2q03_A Uncharacterized protein 14.6 3.7E+02 0.013 19.8 11.7 85 87-176 46-136 (138)
9 2kq8_A Cell WALL hydrolase; GF 13.8 47 0.0016 21.2 0.4 16 77-92 13-28 (70)
10 4ank_A Transthyretin; hormone 9.3 1.1E+02 0.0038 23.0 1.2 21 35-55 30-50 (147)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.80 E-value=2e-07 Score=74.15 Aligned_cols=101 Identities=19% Similarity=0.348 Sum_probs=78.3
Q ss_pred CCceeEEEEeeeeeeCCCCCCcceeeEEEEEEEec----CCCceEEEEEEEEEecCcccCcEEEEecccccccceeeeEE
Q 046562 66 LRFGTIAVVDDAVTEGPTIDSKQIGRAQGIYVNSQ----LDGKALYMAFSLIFTDGEFKGSTLEIQGSDIFAMKQREFGV 141 (180)
Q Consensus 66 ~~FG~~~v~Dd~lt~gp~~~S~~VGraqG~~~~~s----~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~aV 141 (180)
..-|+.+.|+++|.++.. -+.||.-+|+-+... +.+..+-..+++.|-+ | | .|+++|..... +...++|
T Consensus 43 ~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd--~-G-hISvQGpy~t~-~Dt~LAI 115 (188)
T 2brj_A 43 FGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGD--Y-G-HLSVQGPYLTY-EDSFLAI 115 (188)
T ss_dssp SCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGG--G-E-EEEEEEEEETT-BCEEEEE
T ss_pred cCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCC--C-c-eEEEecccccc-ccceeeE
Confidence 558999999999997754 588999999977665 2334455566777743 2 4 79999996332 4568999
Q ss_pred eeccceeeeeEEEEEEEEEEeccCCCCeEEEEEEEEE
Q 046562 142 VSGTGHFRFVKGYGIMETQFLDVANLNGIIKLNVTVK 178 (180)
Q Consensus 142 VGGTG~Fr~ArGya~~~t~~~~~~~~~~i~e~~v~v~ 178 (180)
.||||.|+.|+|.++++...+. .-++|.+||.
T Consensus 116 TGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~ 147 (188)
T 2brj_A 116 TGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK 147 (188)
T ss_dssp EEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred ecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence 9999999999999999998752 2478888875
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.63 E-value=2.1e-06 Score=68.51 Aligned_cols=127 Identities=18% Similarity=0.350 Sum_probs=81.8
Q ss_pred CCCCCCeeEEEEEeeeeCCCCCCc-eEEeccCCCC--CCccCCceeEEEEeeeeeeCCCCCCcceeeEEEEEEEec----
Q 046562 28 PRQEAKETNLVLYVHDYFTGRDTS-AITVAGKDGP--TSHILRFGTIAVVDDAVTEGPTIDSKQIGRAQGIYVNSQ---- 100 (180)
Q Consensus 28 ~~~~~~~~~l~fY~Hd~~~g~n~t-~~~v~~~~~~--~~~~~~FG~~~v~Dd~lt~gp~~~S~~VGraqG~~~~~s---- 100 (180)
.+...|...|++|=-+.. ..+.. -.++-+-... ...-...|+.+.|+++|+++.. -+.||...|+-+...
T Consensus 11 ~~~p~~vqel~VyEiNE~-dr~sPa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~ 87 (195)
T 4h6b_A 11 GASPGHVQELFVYEINER-DRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQ 87 (195)
T ss_dssp -----CCEEEEEEEECCS-CSCCCCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETT
T ss_pred CCCCceeEEEEEEEeccc-ccCCcceeecccccCccccccccccccccccccccccccc--cccccccccEEEEEeecCC
Confidence 455667777777753222 22222 2333222111 1123569999999999999977 678999999977653
Q ss_pred CCCceEEEEEEEEEecCcccCcEEEEecccccccceeeeEEeeccceeeeeEEEEEEEEEEe
Q 046562 101 LDGKALYMAFSLIFTDGEFKGSTLEIQGSDIFAMKQREFGVVSGTGHFRFVKGYGIMETQFL 162 (180)
Q Consensus 101 ~~~~~~~~~~~~vF~~g~~~GStl~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~t~~~ 162 (180)
..+..+--.+++.|.+ .| +|+++|..-.- ...-++|+||||.|+.|+|-+++..+-+
T Consensus 88 k~GdryEci~Tf~fGD---~G-hIsvqGpy~t~-eDs~lAITGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 88 KNGDRYEALYSFYFGD---YG-HISVQGPYITY-EDSYLAITGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp TTEEEEEEEEEEECGG---GC-EEEEEEEEETT-BCEEEEEEEESGGGTTCEEEEEEEEEET
T ss_pred CCCceEEEEEEEEecC---Cc-eEEEecceecc-CceeEEEecCcceEcccEEEEEEeEeee
Confidence 2223333445677744 36 79999997442 3457999999999999999999888764
No 3
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=28.14 E-value=54 Score=27.47 Aligned_cols=56 Identities=29% Similarity=0.417 Sum_probs=35.8
Q ss_pred CCceEEEEEEEEEecCcccCcEEEEe-cccccccceeeeEEeecccee---------eeeEEEEEEEE
Q 046562 102 DGKALYMAFSLIFTDGEFKGSTLEIQ-GSDIFAMKQREFGVVSGTGHF---------RFVKGYGIMET 159 (180)
Q Consensus 102 ~~~~~~~~~~~vF~~g~~~GStl~v~-G~~~~~~~~~E~aVVGGTG~F---------r~ArGya~~~t 159 (180)
....|...|--.|++|.++||--++. |.... .-..-+-|=|||.| |.|.||...+.
T Consensus 371 spstwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvra 436 (438)
T 3h6j_A 371 SPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVRA 436 (438)
T ss_dssp SCSCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEEE
T ss_pred CCcceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEEe
Confidence 33457777778899999999866653 22221 11223455678887 77888876653
No 4
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=25.26 E-value=2.1e+02 Score=21.21 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=50.1
Q ss_pred CcceeeEEEEEEEecCC--CceEEEEEE---EEEecCcccCcEEEEe--cccccccceeeeEEee--ccceeeeeEEEEE
Q 046562 86 SKQIGRAQGIYVNSQLD--GKALYMAFS---LIFTDGEFKGSTLEIQ--GSDIFAMKQREFGVVS--GTGHFRFVKGYGI 156 (180)
Q Consensus 86 S~~VGraqG~~~~~s~~--~~~~~~~~~---~vF~~g~~~GStl~v~--G~~~~~~~~~E~aVVG--GTG~Fr~ArGya~ 156 (180)
-.+.|+.++-++.+-.+ +...++.+. -.+ +| -+| |+.++ |..........+-||= |||++...+|-..
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl-~G-r~G-sFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~ 117 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKL-CG-RQG-SFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMA 117 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEE-TT-EEE-EEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEE-CC-ceE-EEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEE
Confidence 34677888888877653 444454432 222 12 245 34443 4444334457889998 9999999999998
Q ss_pred EEEEEeccCCCCeEEEEEEEE
Q 046562 157 METQFLDVANLNGIIKLNVTV 177 (180)
Q Consensus 157 ~~t~~~~~~~~~~i~e~~v~v 177 (180)
++.. + +..-++||..+
T Consensus 118 ~~~~--~---G~h~y~ldy~l 133 (141)
T 2ooj_A 118 ISIE--N---GQHFYEFSFCF 133 (141)
T ss_dssp EEEE--T---TEEEEEEEEEE
T ss_pred EEEc--C---CeEEEEEEEEc
Confidence 8753 2 33445555443
No 5
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=18.30 E-value=61 Score=20.87 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=14.6
Q ss_pred eeeeCCCCCCcceeeEE
Q 046562 77 AVTEGPTIDSKQIGRAQ 93 (180)
Q Consensus 77 ~lt~gp~~~S~~VGraq 93 (180)
.|+.+|+.++++++++.
T Consensus 12 nvRs~P~~~~~vi~~l~ 28 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTLR 28 (74)
T ss_dssp EEESSSSTTTCEEEEEE
T ss_pred EEEcCCCCCChHHEEEC
Confidence 68999999999998863
No 6
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=16.63 E-value=92 Score=20.21 Aligned_cols=16 Identities=44% Similarity=0.582 Sum_probs=13.7
Q ss_pred eeeeCCCCCCcceeeE
Q 046562 77 AVTEGPTIDSKQIGRA 92 (180)
Q Consensus 77 ~lt~gp~~~S~~VGra 92 (180)
.|+.+|+.+++++|.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 6899999999988875
No 7
>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C*
Probab=15.25 E-value=3.8e+02 Score=20.14 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=27.9
Q ss_pred eeeEEeeccceeeeeEEEEEEEEEEeccCCCCeEEEEEEEEEeC
Q 046562 137 REFGVVSGTGHFRFVKGYGIMETQFLDVANLNGIIKLNVTVKHY 180 (180)
Q Consensus 137 ~E~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~i~e~~v~v~hy 180 (180)
-+.|+-.. .+++-+|.-..-...++..++..+.-+|.++.||
T Consensus 99 t~~p~s~~--g~~fpkG~Y~~~~ea~~~~~e~~l~ClNfTii~~ 140 (144)
T 2e56_A 99 TTISFSFK--GIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQ 140 (144)
T ss_dssp EEEEEEEC--CCTTCCSEEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred EeeecccC--cEecCCCcEEEEEEEecCCchheEEEeeEEEEEc
Confidence 45566655 6788888433323233444567899999999997
No 8
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=14.62 E-value=3.7e+02 Score=19.75 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=49.4
Q ss_pred cceeeEEEEEEEecC-CCceEEEEEEEEE-ecCcccCcEEEEe--cccccccceeeeEEee--ccceeeeeEEEEEEEEE
Q 046562 87 KQIGRAQGIYVNSQL-DGKALYMAFSLIF-TDGEFKGSTLEIQ--GSDIFAMKQREFGVVS--GTGHFRFVKGYGIMETQ 160 (180)
Q Consensus 87 ~~VGraqG~~~~~s~-~~~~~~~~~~~vF-~~g~~~GStl~v~--G~~~~~~~~~E~aVVG--GTG~Fr~ArGya~~~t~ 160 (180)
.+.|+.++-++.+-. ++...++++..+= +-..-+| |+.++ |..........+-||= |||++...+|-..++..
T Consensus 46 ~leGts~~~~L~~~~~~G~A~yva~E~f~Gtl~Gr~G-sFvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~~ 124 (138)
T 2q03_A 46 VLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKG-SFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVST 124 (138)
T ss_dssp SEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEE-EEEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEEC
T ss_pred EEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceE-EEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEEe
Confidence 477788888776654 4434444432111 1112245 34443 4443333457889998 99999999999988643
Q ss_pred EeccCCCCeEEEEEEE
Q 046562 161 FLDVANLNGIIKLNVT 176 (180)
Q Consensus 161 ~~~~~~~~~i~e~~v~ 176 (180)
+ ++..-++|+..
T Consensus 125 --~--~G~h~Y~~~y~ 136 (138)
T 2q03_A 125 --E--NGQANYQITLQ 136 (138)
T ss_dssp --S--TTEEEEEEEEE
T ss_pred --c--CCceEEEEEEe
Confidence 2 14444666554
No 9
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=13.85 E-value=47 Score=21.18 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.9
Q ss_pred eeeeCCCCCCcceeeE
Q 046562 77 AVTEGPTIDSKQIGRA 92 (180)
Q Consensus 77 ~lt~gp~~~S~~VGra 92 (180)
.|+.+|+.+++++|++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5789999999999875
No 10
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=9.28 E-value=1.1e+02 Score=23.03 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=13.1
Q ss_pred eEEEEEeeeeCCCCCCceEEe
Q 046562 35 TNLVLYVHDYFTGRDTSAITV 55 (180)
Q Consensus 35 ~~l~fY~Hd~~~g~n~t~~~v 55 (180)
--|+-.+=|+..|..+..++|
T Consensus 30 ~PLTtHVLDt~~G~PA~gv~V 50 (147)
T 4ank_A 30 CPLMVKVLDAVRGSPAINVAV 50 (147)
T ss_dssp CCEEEEEEETTTTEECCSCEE
T ss_pred CCeEEEEEeCCCCcCCCCCEE
Confidence 347777788888844443333
Done!