BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046564
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 119 bits (299), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 6/146 (4%)
Query: 12 STLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNXX 71
ST S +YFI +KSIK++ K+V+ +TSLLSI S +GG KIST PY VL ++IY
Sbjct: 228 STQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAV 287
Query: 72 XXXXXXXXXXXXMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYW 131
+ +A +APFGA F+T N+ +T+ GP+VP++DL L+ S + W
Sbjct: 288 TEAFIKESAARNITRVASVAPFGACFSTDNILSTR-LGPSVPSIDLVLQ-----SESVVW 341
Query: 132 RICGANSMARIKRNVMCLGFLDGGPN 157
I G+NSM I NV+CLG +DGG N
Sbjct: 342 TITGSNSMVYINDNVVCLGVVDGGSN 367
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 119 bits (299), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 6/146 (4%)
Query: 12 STLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNXX 71
ST S +YFI +KSIK++ K+V+ +TSLLSI S +GG KIST PY VL ++IY
Sbjct: 228 STQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAV 287
Query: 72 XXXXXXXXXXXXMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYW 131
+ +A +APFGA F+T N+ +T+ GP+VP++DL L+ S + W
Sbjct: 288 TEAFIKESAARNITRVASVAPFGACFSTDNILSTR-LGPSVPSIDLVLQ-----SESVVW 341
Query: 132 RICGANSMARIKRNVMCLGFLDGGPN 157
I G+NSM I NV+CLG +DGG N
Sbjct: 342 TITGSNSMVYINDNVVCLGVVDGGSN 367
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 9 PLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAV-GGAKISTFTPYAVLHSAI 67
PL TL +Y + + SI+++ V + S G+ GG IST TP+ VL ++
Sbjct: 221 PLTITL---QGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSV 277
Query: 68 YNXXXXXXXXXXXXXXMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSS 127
Y + +APFG FN+ + A P++DL + + +
Sbjct: 278 YQAFTQVFAQQLPKQAQV--KSVAPFGLCFNSNKIN-------AYPSVDL----VMDKPN 324
Query: 128 NTYWRICGANSMARIKRNVMCLGFLDGGPNP 158
WRI G + M + + V CLG ++GG P
Sbjct: 325 GPVWRISGEDLMVQAQPGVTCLGVMNGGMQP 355
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 18 SDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNXXXXXXXX 77
S ++I+ +SIKV+ V L A GG +ST PY +L +Y
Sbjct: 205 SPAHYISARSIKVENTRVPISERAL-----ATGGVMLSTRLPYVLLRRDVYRPLVDAFTK 259
Query: 78 XXXXXXMIG------LAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYW 131
G + P+APF ++TK + G VP + LEL G + W
Sbjct: 260 ALAAQPANGAPVARAVKPVAPFELCYDTKTLGNNPG-GYWVPNVLLELDG------GSDW 312
Query: 132 RICGANSMARIKRNVMCLGFLD 153
+ G NSM +K C+ F++
Sbjct: 313 AMTGKNSMVDVKPGTACVAFVE 334
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 18 SDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNXXXXXXXX 77
S ++I+ +SI V V L A GG +ST PY +L +Y
Sbjct: 203 SPAHYISARSIVVGDTRVPVPEGAL-----ATGGVMLSTRLPYVLLRPDVYRPLMDAFTK 257
Query: 78 XXXXXXMIG------LAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYW 131
G + +APFG ++TK + G AVP + L L G + W
Sbjct: 258 ALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLG-GYAVPNVQLGLDG------GSDW 310
Query: 132 RICGANSMARIKRNVMCLGFLD 153
+ G NSM +K+ C+ F++
Sbjct: 311 TMTGKNSMVDVKQGTACVAFVE 332
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 18/142 (12%)
Query: 18 SDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNXXXXXXXX 77
S ++I+ +SI V V L A GG +ST PY +L +Y
Sbjct: 203 SPAHYISARSIVVGDTRVPVPEGAL-----ATGGVMLSTRLPYVLLRPDVYRPLMDAFTK 257
Query: 78 XXXXXXMIGLAPLAP------FGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYW 131
G FG ++TK + G AVP + L L G + W
Sbjct: 258 ALAAQHANGAPVARAVVAVAPFGVCYDTKTLGNNLG-GYAVPNVQLGLDG------GSDW 310
Query: 132 RICGANSMARIKRNVMCLGFLD 153
+ G NSM +K+ C+ F++
Sbjct: 311 TMTGKNSMVDVKQGTACVAFVE 332
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 1 FSGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSG 47
+SG LI +P+ S R I+L S++V GK ++ D + +DSG
Sbjct: 179 YSGSLIALPVTSDRELR-----ISLGSVEVSGKTINTDNVDVLLDSG 220
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 1 FSGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSG 47
+SG LI +P+ S R I+L S++V GK ++ D + +DSG
Sbjct: 179 YSGSLIALPVTSDRELR-----ISLGSVEVSGKTINTDNVDVLLDSG 220
>pdb|2GHR|A Chain A, Crystal Structure Of Homoserine O-Succinyltransferase
(Np_981826.1) From Bacillus Cereus Atcc 10987 At 2.40 A
Resolution
Length = 302
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 1 FSGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGG 51
F GL+I + TL+F DY+ LK I K TS L I GA G
Sbjct: 101 FDGLIITGAPVETLSFEEVDYWEELKRIXEYSKTNV--TSTLHICWGAQAG 149
>pdb|2VDJ|A Chain A, Crystal Structure Of Homoserine O-acetyltransferase (meta)
From Bacillus Cereus With Homoserine
Length = 301
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 1 FSGLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGG 51
F GL+I + TL+F DY+ LK I K TS L I GA G
Sbjct: 100 FDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNV--TSTLHICWGAQAG 148
>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With
D-Phe-Pro-Arg- Chloromethylketone
Length = 228
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 134 CGANSMARIKRNVMCLGFLDGGPN 157
C A+ +I N+ C+GFL+GG +
Sbjct: 152 CEASYPGKITSNMFCVGFLEGGKD 175
>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
Length = 245
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 134 CGANSMARIKRNVMCLGFLDGGPN 157
C A+ +I N++C+GFL+GG +
Sbjct: 170 CEASYPGKITDNMVCVGFLEGGKD 193
>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 233
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 158 CEASYPGKITDNMVCVGFLEGG 179
>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin
Inhibitor (Bpti)
Length = 233
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 158 CEASYPGKITDNMVCVGFLEGG 179
>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic
Trypsinogen-Bpti Complex
Length = 231
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 156 CEASYPGKITDNMVCVGFLEGG 177
>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of
The Complex Formed Between Porcine Beta-trypsin And
Mcti-a, A Trypsin Inhibitor Of Squash Family
pdb|1QQU|A Chain A, Crystal Structure Of Porcine Beta Trypsin With Bound
Acetate Ion
pdb|1FMG|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.04%
Polydocanol
pdb|1FN6|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.1%
Polydocanol
pdb|1FNI|A Chain A, Crystal Structure Of Porcine Beta Trypsin With 0.01%
Polydocanol
Length = 223
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 105 TKNAGPAVPTMDLELRG--IGNSSSNTYWRICGANSMARIKRNVMCLGFLDGG 155
TK++G + P++ L+ + NSS C ++ +I N++C+GFL GG
Sbjct: 124 TKSSGSSYPSLLQCLKAPVLSNSS-------CKSSYPGQITGNMICVGFLQGG 169
>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 231
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 156 CEASYPGKITDNMVCVGFLEGG 177
>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His
Length = 223
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17
Complexed With Bovine Pancreatic Trypsin Inhibitor
(Bpti)
Length = 231
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 156 CEASYPGKITDNMVCVGFLEGG 177
>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99rt
pdb|1J14|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99rt
Length = 223
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Nickel- Bound
Length = 223
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Zinc-Bound
pdb|1SLV|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin;
Copper- Bound
pdb|1SLU|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin
Length = 223
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
pdb|2RA3|B Chain B, Human Cationic Trypsin Complexed With Bovine Pancreatic
Trypsin Inhibitor (bpti)
Length = 224
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 134 CGANSMARIKRNVMCLGFLDGGPN 157
C A+ +I N+ C+GFL+GG +
Sbjct: 148 CEASYPGKITSNMFCVGFLEGGKD 171
>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|D Chain D, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a,
D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZU|C Chain C, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|D Chain D, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 223
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu
Length = 223
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys
Length = 223
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine
Pancreatic Trypsin Inhibitor (Bpti)
pdb|1ANE|A Chain A, Anionic Trypsin Wild Type
pdb|3FP6|E Chain E, Anionic Trypsin In Complex With Bovine Pancreatic Trypsin
Inhibitor (Bpti) Determined To The 1.49 A Resolution
Limit
Length = 223
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With
The Protein Inhibitors Appi And Bpti
pdb|1BRC|E Chain E, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
pdb|1BRA|A Chain A, Relocating A Negative Charge In The Binding Pocket Of
Trypsin
Length = 223
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex
pdb|1YKT|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLC|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|1YLD|A Chain A, TrypsinBPTI COMPLEX MUTANT
pdb|3FP7|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Cleaved At The
Scissile Bond (Lys15-Ala16) Determined To The 1.46 A
Resolution Limit
pdb|3FP8|E Chain E, Anionic Trypsin Variant S195a In Complex With Bovine
Pancreatic Trypsin Inhibitor (Bpti) Determined To The
1.46 A Resolution Limit
Length = 223
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
pdb|1AMH|B Chain B, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With
Ser (D189s)
Length = 223
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|1TRM|B Chain B, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
pdb|2TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of
Trypsin. Role Of Asp102 In Serine Protease Catalysis
Length = 223
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
pdb|1TRN|B Chain B, Crystal Structure Of Human Trypsin 1: Unexpected
Phosphorylation Of Tyrosine 151
Length = 224
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 134 CGANSMARIKRNVMCLGFLDGGPN 157
C A+ +I N+ C+GFL+GG +
Sbjct: 148 CEASYPGKITSNMFCVGFLEGGKD 171
>pdb|1DPO|A Chain A, Structure Of Rat Trypsin
Length = 223
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+ +I N++C+GFL+GG
Sbjct: 148 CEASYPGKITDNMVCVGFLEGG 169
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 105 TKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGPN 157
TK++G + P++ L+ S S+ C ++ +I N++C+GFL+GG +
Sbjct: 132 TKSSGSSYPSLLQCLKAPVLSDSS-----CKSSYPGQITGNMICVGFLEGGKD 179
>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX
pdb|1C9P|A Chain A, Complex Of Bdellastasin With Porcine Trypsin
Length = 223
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 105 TKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGPN 157
TK++G + P++ L+ S S+ C ++ +I N++C+GFL+GG +
Sbjct: 124 TKSSGSSYPSLLQCLKAPVLSDSS-----CKSSYPGQITGNMICVGFLEGGKD 171
>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J16|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT
pdb|1J17|T Chain T, Factor Xa Specific Inhibitor In Complex With Rat Trypsin
Mutant X99175190RT
Length = 223
Score = 26.2 bits (56), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 134 CGANSMARIKRNVMCLGFLDGG 155
C A+S I N++C+GFL+GG
Sbjct: 148 CEASSSFIITDNMVCVGFLEGG 169
>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1TFX|B Chain B, Complex Of The Second Kunitz Domain Of Tissue Factor
Pathway Inhibitor With Porcine Trypsin
pdb|1LDT|T Chain T, Complex Of Leech-Derived Tryptase Inhibitor With Porcine
Trypsin
pdb|1AVW|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Orthorhombic Crystal Form
pdb|1AVX|A Chain A, Complex Porcine Pancreatic TrypsinSOYBEAN TRYPSIN
Inhibitor, Tetragonal Crystal Form
pdb|1EJA|A Chain A, Structure Of Porcine Trypsin Complexed With Bdellastasin,
An Antistasin-Type Inhibitor
pdb|1S5S|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S6F|A Chain A, Porcine Trypsin Covalent Complex With Borate And
Guanidine- 3 Inhibitor
pdb|1S6H|A Chain A, Porcine Trypsin Complexed With Guanidine-3-Propanol
Inhibitor
pdb|1S81|A Chain A, Porcine Trypsin With No Inhibitor Bound
pdb|1S82|A Chain A, Porcine Trypsin Complexed With Borate And Ethylene Glycol
pdb|1S83|A Chain A, Porcine Trypsin Complexed With 4-amino Propanol
pdb|1S84|A Chain A, Porcine Trypsin Covalent Complex With 4-Amino Butanol,
Borate And Ethylene Glycol
pdb|1S85|A Chain A, Porcine Trypsin Complexed With P-Hydroxymethyl Benzamidine
And Borate
pdb|1H9I|E Chain E, Complex Of Eeti-Ii Mutant With Porcine Trypsin
pdb|1V6D|A Chain A, The Crystal Structure Of The Trypsin Complex With
Synthetic Heterochiral Peptide
pdb|1TX6|A Chain A, Trypsin:bbi Complex
pdb|1TX6|B Chain B, Trypsin:bbi Complex
pdb|1TX6|C Chain C, Trypsin:bbi Complex
pdb|1TX6|D Chain D, Trypsin:bbi Complex
pdb|1Z7K|A Chain A, Crystal Structure Of Trypsin- Ovomucoid Turkey Egg White
Inhibitor Complex
pdb|1YF4|A Chain A, Crystal Structure Of Trypsin-Vasopressin Complex
Length = 223
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 105 TKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGPN 157
TK++G + P++ L+ S S+ C ++ +I N++C+GFL+GG +
Sbjct: 124 TKSSGSSYPSLLQCLKAPVLSDSS-----CKSSYPGQITGNMICVGFLEGGKD 171
>pdb|2A31|A Chain A, Trypsin In Complex With Borate
pdb|2A32|A Chain A, Trypsin In Complex With Benzene Boronic Acid
Length = 223
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 105 TKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGPN 157
TK++G + P++ L+ S S+ C ++ +I N++C+GFL+GG +
Sbjct: 124 TKSSGSSYPSLLQCLKAPVLSDSS-----CKSSYPGQITGNMICVGFLEGGKD 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,214,374
Number of Sequences: 62578
Number of extensions: 134485
Number of successful extensions: 424
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 43
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)