Query 046564
Match_columns 160
No_of_seqs 106 out of 805
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 13:23:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14541 TAXi_C: Xylanase inhi 100.0 1.2E-33 2.6E-38 216.0 11.9 127 20-154 1-128 (161)
2 cd05489 xylanase_inhibitor_I_l 100.0 5.2E-30 1.1E-34 218.9 16.9 145 3-156 184-329 (362)
3 PLN03146 aspartyl protease fam 99.9 2.3E-26 5E-31 200.5 15.1 132 4-155 266-397 (431)
4 cd05472 cnd41_like Chloroplast 99.9 4.3E-21 9.3E-26 158.6 15.4 133 3-154 131-264 (299)
5 KOG1339 Aspartyl protease [Pos 99.8 6.1E-20 1.3E-24 158.2 13.0 131 4-157 230-361 (398)
6 cd05476 pepsin_A_like_plant Ch 99.6 5.5E-15 1.2E-19 120.4 11.2 101 3-154 131-231 (265)
7 cd05473 beta_secretase_like Be 99.6 6.5E-15 1.4E-19 125.2 10.5 131 3-152 175-311 (364)
8 cd05475 nucellin_like Nucellin 99.6 1.3E-14 2.9E-19 118.9 10.7 95 3-155 143-237 (273)
9 cd05474 SAP_like SAPs, pepsin- 99.5 6.4E-14 1.4E-18 114.8 8.5 122 3-155 137-265 (295)
10 cd05477 gastricsin Gastricsins 99.4 1E-12 2.2E-17 109.6 9.7 111 3-153 168-280 (318)
11 cd05478 pepsin_A Pepsin A, asp 99.4 2.7E-12 5.7E-17 107.1 9.4 112 3-155 174-287 (317)
12 cd05488 Proteinase_A_fungi Fun 99.4 3.1E-12 6.6E-17 107.0 9.2 109 3-153 174-283 (320)
13 cd06096 Plasmepsin_5 Plasmepsi 99.4 3.3E-12 7.1E-17 107.2 9.1 97 3-154 197-293 (326)
14 cd05486 Cathespin_E Cathepsin 99.4 4.5E-12 9.7E-17 105.7 9.9 111 3-153 166-280 (316)
15 cd05490 Cathepsin_D2 Cathepsin 99.3 2.2E-11 4.7E-16 101.9 10.5 113 3-153 174-289 (325)
16 cd05485 Cathepsin_D_like Cathe 99.2 8.3E-11 1.8E-15 98.9 11.6 111 3-153 179-293 (329)
17 cd05487 renin_like Renin stimu 99.2 9.8E-11 2.1E-15 98.1 9.7 111 4-154 176-290 (326)
18 cd06098 phytepsin Phytepsin, a 99.2 1.8E-10 3.8E-15 96.4 10.0 101 3-152 177-280 (317)
19 PTZ00165 aspartyl protease; Pr 99.1 5.7E-10 1.2E-14 99.1 9.9 111 4-154 295-410 (482)
20 cd05471 pepsin_like Pepsin-lik 99.0 1.6E-09 3.4E-14 87.4 7.3 91 3-120 167-257 (283)
21 PTZ00147 plasmepsin-1; Provisi 98.7 7.5E-08 1.6E-12 85.1 10.5 110 3-154 304-416 (453)
22 PTZ00013 plasmepsin 4 (PM4); P 98.7 1.8E-07 4E-12 82.6 10.3 108 3-153 303-414 (450)
23 cd06097 Aspergillopepsin_like 98.4 6.9E-07 1.5E-11 73.2 5.6 60 3-75 165-224 (278)
24 PF00026 Asp: Eukaryotic aspar 98.3 2E-06 4.4E-11 70.5 7.7 111 4-153 168-281 (317)
25 PF13650 Asp_protease_2: Aspar 91.1 0.36 7.8E-06 31.9 3.7 30 27-71 2-31 (90)
26 cd05484 retropepsin_like_LTR_2 89.1 0.68 1.5E-05 31.5 3.9 30 27-71 4-33 (91)
27 cd05483 retropepsin_like_bacte 85.3 2.1 4.5E-05 28.4 4.5 30 27-71 6-35 (96)
28 TIGR02281 clan_AA_DTGA clan AA 83.0 2.5 5.5E-05 30.6 4.4 35 19-71 10-44 (121)
29 cd06095 RP_RTVL_H_like Retrope 77.9 3.8 8.3E-05 27.6 3.7 29 28-71 3-31 (86)
30 PF13975 gag-asp_proteas: gag- 77.2 4.7 0.0001 26.4 3.9 20 52-71 22-41 (72)
31 cd05479 RP_DDI RP_DDI; retrope 73.6 5.5 0.00012 28.8 3.8 29 27-70 20-48 (124)
32 PF00077 RVP: Retroviral aspar 72.9 4.5 9.7E-05 27.5 3.0 28 26-68 8-35 (100)
33 PF09668 Asp_protease: Asparty 66.5 12 0.00025 27.7 4.2 34 20-71 24-57 (124)
34 cd05481 retropepsin_like_LTR_1 64.5 9.1 0.0002 26.4 3.2 21 52-72 13-33 (93)
35 PF15409 PH_8: Pleckstrin homo 59.4 21 0.00046 24.9 4.2 56 20-77 29-87 (89)
36 COG5550 Predicted aspartyl pro 58.0 7.5 0.00016 28.9 1.9 19 53-71 30-49 (125)
37 PHA02087 hypothetical protein 41.9 21 0.00046 23.9 1.9 24 28-57 50-73 (83)
38 PF02753 PapD_C: Pili assembly 38.5 33 0.00071 21.8 2.4 13 19-31 7-19 (68)
39 PF08002 DUF1697: Protein of u 33.5 21 0.00045 26.6 0.9 56 20-75 3-68 (137)
40 PRK15233 putative fimbrial cha 33.3 37 0.00081 27.9 2.5 18 19-36 191-208 (246)
41 PRK15211 fimbrial chaperone pr 31.9 43 0.00093 27.2 2.6 17 19-35 166-182 (229)
42 PRK15224 pili assembly chapero 31.8 39 0.00086 27.6 2.4 17 19-35 177-193 (237)
43 TIGR03698 clan_AA_DTGF clan AA 29.2 44 0.00095 23.5 2.0 21 51-71 18-39 (107)
44 PRK15188 fimbrial chaperone pr 28.9 49 0.0011 26.9 2.4 17 19-35 172-188 (228)
45 PF12508 DUF3714: Protein of u 28.0 1.5E+02 0.0032 23.7 5.0 31 20-52 102-132 (200)
46 PRK15253 putative fimbrial ass 27.2 49 0.0011 27.1 2.2 17 19-35 182-198 (242)
47 cd05480 NRIP_C NRIP_C; putativ 25.4 75 0.0016 22.8 2.6 19 52-70 12-30 (103)
48 cd05470 pepsin_retropepsin_lik 23.7 91 0.002 21.0 2.8 16 52-67 14-29 (109)
49 PRK11385 putativi pili assembl 23.6 68 0.0015 26.1 2.4 17 19-35 175-191 (236)
50 PRK15208 long polar fimbrial c 22.9 73 0.0016 25.6 2.4 17 19-35 166-182 (228)
51 cd00303 retropepsin_like Retro 22.8 63 0.0014 19.3 1.7 20 52-71 12-31 (92)
52 PRK15192 fimbrial chaperone Bc 22.7 70 0.0015 26.1 2.3 17 19-35 170-186 (234)
53 PF06183 DinI: DinI-like famil 22.1 78 0.0017 20.6 2.0 18 63-80 1-18 (65)
54 PRK15295 fimbrial assembly cha 21.8 83 0.0018 25.3 2.6 17 19-35 165-181 (226)
55 PF13619 KTSC: KTSC domain 21.5 75 0.0016 19.9 1.8 23 52-74 20-44 (60)
56 PRK15290 lfpB fimbrial chapero 21.1 81 0.0018 25.8 2.4 17 19-35 184-200 (243)
57 PRK15195 fimbrial chaperone pr 20.8 91 0.002 25.2 2.6 17 19-35 171-187 (229)
58 PRK15299 fimbrial chaperone pr 20.8 85 0.0018 25.2 2.4 17 19-35 168-184 (227)
59 PRK15254 fimbrial chaperone pr 20.7 83 0.0018 25.7 2.3 15 19-33 162-176 (239)
No 1
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=100.00 E-value=1.2e-33 Score=216.02 Aligned_cols=127 Identities=24% Similarity=0.448 Sum_probs=100.5
Q ss_pred ceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhcccCccc-CCCCCCCccccc
Q 046564 20 DYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKKMIG-LAPLAPFGARFN 98 (160)
Q Consensus 20 ~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~~~~~-~~~~~~fdlCy~ 98 (160)
+|||+|+||+|||++|+++++.|++ ++|.||+||||||++|+|++++|++|++||.+++...++++ .+...++++||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 5999999999999999999999998 88999999999999999999999999999999998544444 345688999999
Q ss_pred ccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEEEEEeC
Q 046564 99 TKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDG 154 (160)
Q Consensus 99 ~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CLa~~~~ 154 (160)
.+....... ...+|+|+|||+| |++|+|+++|||+..+++++||||.++
T Consensus 80 ~~~~~~~~~-~~~~P~i~l~F~~------ga~l~l~~~~y~~~~~~~~~Cla~~~~ 128 (161)
T PF14541_consen 80 LSSFGVNRD-WAKFPTITLHFEG------GADLTLPPENYFVQVSPGVFCLAFVPS 128 (161)
T ss_dssp GGCS-EETT-EESS--EEEEETT------SEEEEE-HHHHEEEECTTEEEESEEEE
T ss_pred ccccccccc-cccCCeEEEEEeC------CcceeeeccceeeeccCCCEEEEEEcc
Confidence 987311111 3579999999998 699999999999999999999999988
No 2
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=99.97 E-value=5.2e-30 Score=218.88 Aligned_cols=145 Identities=36% Similarity=0.582 Sum_probs=119.8
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
..++||||+.++..+ .+|||+|++|+||+++|+++++.|+++.+|.||+||||||++|+||+++|++|++||.+++..
T Consensus 184 ~~~~~tPl~~~~~~~-~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~- 261 (362)
T cd05489 184 KSLSYTPLLTNPRKS-GEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATAR- 261 (362)
T ss_pred CCccccccccCCCCC-CceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcc-
Confidence 568999999987554 689999999999999999998888888788999999999999999999999999999999873
Q ss_pred CcccCCCC-CCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEEEEEeCCC
Q 046564 83 KMIGLAPL-APFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGGP 156 (160)
Q Consensus 83 ~~~~~~~~-~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CLa~~~~~~ 156 (160)
.+..... ..+|+||+......... ...+|+|+|||+|+ |++|+|+++|||++++++++||||.+++.
T Consensus 262 -~~~~~~~~~~~~~C~~~~~~~~~~~-~~~~P~it~~f~g~-----g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~ 329 (362)
T cd05489 262 -IPRVPAAAVFPELCYPASALGNTRL-GYAVPAIDLVLDGG-----GVNWTIFGANSMVQVKGGVACLAFVDGGS 329 (362)
T ss_pred -cCcCCCCCCCcCccccCCCcCCccc-ccccceEEEEEeCC-----CeEEEEcCCceEEEcCCCcEEEEEeeCCC
Confidence 2222222 23499999764322111 24799999999973 58999999999999988899999998753
No 3
>PLN03146 aspartyl protease family protein; Provisional
Probab=99.94 E-value=2.3e-26 Score=200.48 Aligned_cols=132 Identities=16% Similarity=0.286 Sum_probs=110.7
Q ss_pred CcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhcccC
Q 046564 4 LLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKK 83 (160)
Q Consensus 4 ~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~~ 83 (160)
.++||||+.+.. + .+|||+|+||+||+++++++...|. ..|.||+||||||++|+||+++|++|+++|.+++..
T Consensus 266 ~~~~tPl~~~~~-~-~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~-- 339 (431)
T PLN03146 266 GVVSTPLVSKDP-D-TFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGG-- 339 (431)
T ss_pred CceEcccccCCC-C-CeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhcc--
Confidence 478999997632 2 6899999999999999999988876 567889999999999999999999999999999973
Q ss_pred cccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEEEEEeCC
Q 046564 84 MIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGG 155 (160)
Q Consensus 84 ~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CLa~~~~~ 155 (160)
.+..+....+++||+... ...+|+|+|||+| ++|.|+++|||+.++++++||+|..+.
T Consensus 340 ~~~~~~~~~~~~C~~~~~-------~~~~P~i~~~F~G-------a~~~l~~~~~~~~~~~~~~Cl~~~~~~ 397 (431)
T PLN03146 340 ERVSDPQGLLSLCYSSTS-------DIKLPIITAHFTG-------ADVKLQPLNTFVKVSEDLVCFAMIPTS 397 (431)
T ss_pred ccCCCCCCCCCccccCCC-------CCCCCeEEEEECC-------CeeecCcceeEEEcCCCcEEEEEecCC
Confidence 222233456899998542 1368999999986 799999999999998889999998764
No 4
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=99.87 E-value=4.3e-21 Score=158.55 Aligned_cols=133 Identities=18% Similarity=0.281 Sum_probs=105.7
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
+.++|||++.++..+ .+|+|+|.+|+||++.+.++... .+.+++||||||++++||+++|++|.+++.+++..
T Consensus 131 g~l~~~pv~~~~~~~-~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~- 203 (299)
T cd05472 131 AGASFTPMLSNPRVP-TFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAA- 203 (299)
T ss_pred CCceECCCccCCCCC-CeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhcc-
Confidence 468999999887554 58999999999999998765421 24578999999999999999999999999988752
Q ss_pred CcccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEe-CCCeEEEEEEeC
Q 046564 83 KMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARI-KRNVMCLGFLDG 154 (160)
Q Consensus 83 ~~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~-~~~~~CLa~~~~ 154 (160)
.++......++.||+.+... ...+|+|+|+|.| |+.|.|++++|++.. ..+..||+|...
T Consensus 204 -~~~~~~~~~~~~C~~~~~~~-----~~~~P~i~f~f~~------g~~~~l~~~~y~~~~~~~~~~C~~~~~~ 264 (299)
T cd05472 204 -YPRAPGFSILDTCYDLSGFR-----SVSVPTVSLHFQG------GADVELDASGVLYPVDDSSQVCLAFAGT 264 (299)
T ss_pred -CCCCCCCCCCCccCcCCCCc-----CCccCCEEEEECC------CCEEEeCcccEEEEecCCCCEEEEEeCC
Confidence 22333334577899875432 1369999999997 589999999999844 457899999865
No 5
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.1e-20 Score=158.25 Aligned_cols=131 Identities=25% Similarity=0.365 Sum_probs=107.6
Q ss_pred CcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhcccC
Q 046564 4 LLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKK 83 (160)
Q Consensus 4 ~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~~ 83 (160)
.+.||||+.++. .+|+|+|.+|+||++. ++++..|..+ .+++||||||++|+||+++|++|+++|.+++.
T Consensus 230 ~l~~tPl~~~~~---~~y~v~l~~I~vgg~~-~~~~~~~~~~---~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~--- 299 (398)
T KOG1339|consen 230 SLTYTPLLSNPS---TYYQVNLDGISVGGKR-PIGSSLFCTD---GGGAIIDSGTSLTYLPTSAYNALREAIGAEVS--- 299 (398)
T ss_pred ceEEEeeccCCC---ccEEEEEeEEEECCcc-CCCcceEecC---CCCEEEECCcceeeccHHHHHHHHHHHHhhee---
Confidence 467999999875 4899999999999999 8888887643 68899999999999999999999999998862
Q ss_pred cccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeE-EEEEEeCCCC
Q 046564 84 MIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVM-CLGFLDGGPN 157 (160)
Q Consensus 84 ~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~-CLa~~~~~~~ 157 (160)
. .......+..||+.+... ..+|.|+|||.+ |+.|.++++||++.++++.. |+++..+.+.
T Consensus 300 ~-~~~~~~~~~~C~~~~~~~------~~~P~i~~~f~~------g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~ 361 (398)
T KOG1339|consen 300 V-VGTDGEYFVPCFSISTSG------VKLPDITFHFGG------GAVFSLPPKNYLVEVSDGGGVCLAFFNGMDS 361 (398)
T ss_pred c-cccCCceeeecccCCCCc------ccCCcEEEEECC------CcEEEeCccceEEEECCCCCceeeEEecCCC
Confidence 1 112234567999876432 258999999997 59999999999999977655 9999987654
No 6
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=99.61 E-value=5.5e-15 Score=120.43 Aligned_cols=101 Identities=28% Similarity=0.480 Sum_probs=87.9
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
+.+.|||++.++... .+|+|+|.+|+|+++.+.++.+.+.......+.+||||||++++||+++|
T Consensus 131 ~~l~~~p~~~~~~~~-~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~-------------- 195 (265)
T cd05476 131 SGVVYTPLVKNPANP-TYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY-------------- 195 (265)
T ss_pred CCceEeecccCCCCC-CceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc--------------
Confidence 568999999886444 68999999999999999988776665555677899999999999999998
Q ss_pred CcccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEEEEEeC
Q 046564 83 KMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDG 154 (160)
Q Consensus 83 ~~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CLa~~~~ 154 (160)
|.|+|+|.| +..|.++++||++...++..||++...
T Consensus 196 ------------------------------P~i~~~f~~------~~~~~i~~~~y~~~~~~~~~C~~~~~~ 231 (265)
T cd05476 196 ------------------------------PDLTLHFDG------GADLELPPENYFVDVGEGVVCLAILSS 231 (265)
T ss_pred ------------------------------CCEEEEECC------CCEEEeCcccEEEECCCCCEEEEEecC
Confidence 679999996 589999999999987778899999976
No 7
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=99.59 E-value=6.5e-15 Score=125.23 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=93.5
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
..+.|||++.. .+|+|+|.+|+||++.+.++...+. ..++||||||++++||+++|++|.+++.++...
T Consensus 175 g~l~~~p~~~~-----~~~~v~l~~i~vg~~~~~~~~~~~~-----~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~- 243 (364)
T cd05473 175 GDIWYTPIREE-----WYYEVIILKLEVGGQSLNLDCKEYN-----YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI- 243 (364)
T ss_pred CCceEEecCcc-----eeEEEEEEEEEECCEeccccccccc-----CccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-
Confidence 45789999742 5899999999999999887654332 246999999999999999999999999887641
Q ss_pred CcccCCC--CCC-CcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeC---CCeEEEEEE
Q 046564 83 KMIGLAP--LAP-FGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIK---RNVMCLGFL 152 (160)
Q Consensus 83 ~~~~~~~--~~~-fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~---~~~~CLa~~ 152 (160)
+..+. ... ...|++.+... ...+|+|+|||+|.. ...+.++.|++++|+.... .+..|++|.
T Consensus 244 --~~~~~~~~~~~~~~C~~~~~~~-----~~~~P~i~~~f~g~~-~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~ 311 (364)
T cd05473 244 --EDFPDGFWLGSQLACWQKGTTP-----WEIFPKISIYLRDEN-SSQSFRITILPQLYLRPVEDHGTQLDCYKFA 311 (364)
T ss_pred --ccCCccccCcceeecccccCch-----HhhCCcEEEEEccCC-CCceEEEEECHHHhhhhhccCCCcceeeEEe
Confidence 11111 111 24799754211 125899999998731 1123578999999988653 257898764
No 8
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=99.58 E-value=1.3e-14 Score=118.90 Aligned_cols=95 Identities=16% Similarity=0.234 Sum_probs=77.3
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
+.++||||+.++. + .+|+|+|.+|+||++.+. .+.+++||||||++|+||+++|
T Consensus 143 g~i~ytpl~~~~~-~-~~y~v~l~~i~vg~~~~~----------~~~~~~ivDTGTt~t~lp~~~y-------------- 196 (273)
T cd05475 143 SGVTWTPMRRESQ-K-KHYSPGPASLLFNGQPTG----------GKGLEVVFDSGSSYTYFNAQAY-------------- 196 (273)
T ss_pred CCeeecccccCCC-C-CeEEEeEeEEEECCEECc----------CCCceEEEECCCceEEcCCccc--------------
Confidence 4589999998763 3 589999999999998432 2346899999999999999988
Q ss_pred CcccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEEEEEeCC
Q 046564 83 KMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDGG 155 (160)
Q Consensus 83 ~~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CLa~~~~~ 155 (160)
+|+|+|+|.+.. .++.|+|+++||++...++..||++..+.
T Consensus 197 -----------------------------~p~i~~~f~~~~---~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~ 237 (273)
T cd05475 197 -----------------------------FKPLTLKFGKGW---RTRLLEIPPENYLIISEKGNVCLGILNGS 237 (273)
T ss_pred -----------------------------cccEEEEECCCC---ceeEEEeCCCceEEEcCCCCEEEEEecCC
Confidence 278999998720 02799999999999877788999998654
No 9
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=99.50 E-value=6.4e-14 Score=114.85 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=93.0
Q ss_pred CCcccccCcccCC--CCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhc
Q 046564 3 GLLIKIPLISTLA--FRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAF 80 (160)
Q Consensus 3 ~~~~~TPL~~~~~--~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~ 80 (160)
+.+.|+|++.++. .+ .+|.|+|++|+|+++.++++. ..+.++++|||||++++||.++|++|.+++.++..
T Consensus 137 g~~~~~p~~~~~~~~~~-~~~~v~l~~i~v~~~~~~~~~------~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~ 209 (295)
T cd05474 137 GDLVTLPIVNDNGGSEP-SELSVTLSSISVNGSSGNTTL------LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYD 209 (295)
T ss_pred ceeEEEeCcCcCCCCCc-eEEEEEEEEEEEEcCCCcccc------cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEc
Confidence 3578999998754 23 589999999999999886531 13457899999999999999999999999865543
Q ss_pred ccCcccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeC----CCeEE-EEEEeCC
Q 046564 81 DKKMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIK----RNVMC-LGFLDGG 155 (160)
Q Consensus 81 ~~~~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~----~~~~C-La~~~~~ 155 (160)
. . ....+..|++. .. |.|+|+|.| +.+.+++++|++... .+..| ++|....
T Consensus 210 ~----~--~~~~~~~C~~~----------~~-p~i~f~f~g-------~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~ 265 (295)
T cd05474 210 S----D--EGLYVVDCDAK----------DD-GSLTFNFGG-------ATISVPLSDLVLPASTDDGGDGACYLGIQPST 265 (295)
T ss_pred C----C--CcEEEEeCCCC----------CC-CEEEEEECC-------eEEEEEHHHhEeccccCCCCCCCeEEEEEeCC
Confidence 1 1 11234568753 13 999999976 799999999998874 35678 6888765
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=99.41 E-value=1e-12 Score=109.56 Aligned_cols=111 Identities=14% Similarity=0.243 Sum_probs=82.5
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
+.+.|+|+... .+|.|+|.+|+||++++++.. ...++||||||++++||+++|++|.+++.++...
T Consensus 168 g~l~~~pv~~~-----~~w~v~l~~i~v~g~~~~~~~--------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~- 233 (318)
T cd05477 168 GQIYWTPVTSE-----TYWQIGIQGFQINGQATGWCS--------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ- 233 (318)
T ss_pred CceEEEecCCc-----eEEEEEeeEEEECCEEecccC--------CCceeeECCCCccEECCHHHHHHHHHHhCCcccc-
Confidence 34788998531 589999999999999876432 1346999999999999999999998888544321
Q ss_pred CcccCCCCCCC-cccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEE-EEEe
Q 046564 83 KMIGLAPLAPF-GARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCL-GFLD 153 (160)
Q Consensus 83 ~~~~~~~~~~f-dlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CL-a~~~ 153 (160)
...+ -.|.+. ..+|.|+|+|.| +++.+++++|+... +..|+ +|.+
T Consensus 234 -------~~~~~~~C~~~----------~~~p~l~~~f~g-------~~~~v~~~~y~~~~--~~~C~~~i~~ 280 (318)
T cd05477 234 -------YGQYVVNCNNI----------QNLPTLTFTING-------VSFPLPPSAYILQN--NGYCTVGIEP 280 (318)
T ss_pred -------CCCEEEeCCcc----------ccCCcEEEEECC-------EEEEECHHHeEecC--CCeEEEEEEe
Confidence 1111 236642 247999999965 89999999998864 45795 7864
No 11
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=99.37 E-value=2.7e-12 Score=107.14 Aligned_cols=112 Identities=17% Similarity=0.209 Sum_probs=82.8
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
+.+.|+|+.. + .+|.|+|.+|+|||+.+... +..++||||||++++||+++|++|.+++.....
T Consensus 174 g~l~~~p~~~----~-~~w~v~l~~v~v~g~~~~~~---------~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~-- 237 (317)
T cd05478 174 GSLNWVPVTA----E-TYWQITVDSVTINGQVVACS---------GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN-- 237 (317)
T ss_pred CceEEEECCC----C-cEEEEEeeEEEECCEEEccC---------CCCEEEECCCchhhhCCHHHHHHHHHHhCCccc--
Confidence 4577888853 2 58999999999999987542 234799999999999999999999887743221
Q ss_pred CcccCCCCCCCc-ccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEEE-EEeCC
Q 046564 83 KMIGLAPLAPFG-ARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLG-FLDGG 155 (160)
Q Consensus 83 ~~~~~~~~~~fd-lCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CLa-~~~~~ 155 (160)
....+. .|.+.. .+|.|+|+|.| +.+.|++++|+... +-.|++ |...+
T Consensus 238 ------~~~~~~~~C~~~~----------~~P~~~f~f~g-------~~~~i~~~~y~~~~--~~~C~~~~~~~~ 287 (317)
T cd05478 238 ------QNGEMVVNCSSIS----------SMPDVVFTING-------VQYPLPPSAYILQD--QGSCTSGFQSMG 287 (317)
T ss_pred ------cCCcEEeCCcCcc----------cCCcEEEEECC-------EEEEECHHHheecC--CCEEeEEEEeCC
Confidence 111222 576431 47999999954 89999999998765 558985 66543
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=99.36 E-value=3.1e-12 Score=107.01 Aligned_cols=109 Identities=14% Similarity=0.240 Sum_probs=79.0
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
+.++|+|++.. .+|.|+|.+|+||++.+... ..+++|||||++++||+++|+++.+++.+..
T Consensus 174 g~l~~~p~~~~-----~~w~v~l~~i~vg~~~~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~--- 235 (320)
T cd05488 174 GKITWLPVRRK-----AYWEVELEKIGLGDEELELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKK--- 235 (320)
T ss_pred CceEEEeCCcC-----cEEEEEeCeEEECCEEeccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCcc---
Confidence 45789998741 47899999999999877543 2469999999999999999998877663211
Q ss_pred CcccCCCCCCC-cccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEEEEEe
Q 046564 83 KMIGLAPLAPF-GARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLD 153 (160)
Q Consensus 83 ~~~~~~~~~~f-dlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CLa~~~ 153 (160)
.....+ -.|.+. ..+|.|+|+|.| +++.|+++||++... -.|+....
T Consensus 236 -----~~~~~~~~~C~~~----------~~~P~i~f~f~g-------~~~~i~~~~y~~~~~--g~C~~~~~ 283 (320)
T cd05488 236 -----SWNGQYTVDCSKV----------DSLPDLTFNFDG-------YNFTLGPFDYTLEVS--GSCISAFT 283 (320)
T ss_pred -----ccCCcEEeecccc----------ccCCCEEEEECC-------EEEEECHHHheecCC--CeEEEEEE
Confidence 111111 136542 257999999965 899999999998643 36996543
No 13
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=99.36 E-value=3.3e-12 Score=107.17 Aligned_cols=97 Identities=13% Similarity=0.155 Sum_probs=77.7
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
..+.|+|+... .+|.|+|.+|+|+++...+. .....++||||||++|+||+++|++|++++
T Consensus 197 ~~~~~~p~~~~-----~~y~v~l~~i~vg~~~~~~~-------~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------- 257 (326)
T cd06096 197 SKIVWTPITRK-----YYYYVKLEGLSVYGTTSNSG-------NTKGLGMLVDSGSTLSHFPEDLYNKINNFF------- 257 (326)
T ss_pred CCceEEeccCC-----ceEEEEEEEEEEccccccee-------cccCCCEEEeCCCCcccCCHHHHHHHHhhc-------
Confidence 45788998642 48999999999999861110 123568999999999999999999998776
Q ss_pred CcccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCCeEEEEEEeC
Q 046564 83 KMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRNVMCLGFLDG 154 (160)
Q Consensus 83 ~~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~~~CLa~~~~ 154 (160)
|+|+|+|.+ |+.+++++++|++...+...|+++...
T Consensus 258 ------------------------------P~i~~~f~~------g~~~~i~p~~y~~~~~~~~c~~~~~~~ 293 (326)
T cd06096 258 ------------------------------PTITIIFEN------NLKIDWKPSSYLYKKESFWCKGGEKSV 293 (326)
T ss_pred ------------------------------CcEEEEEcC------CcEEEECHHHhccccCCceEEEEEecC
Confidence 789999996 589999999999987666677777644
No 14
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=99.35 E-value=4.5e-12 Score=105.72 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=81.1
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
+.+.|+|+.. . .+|.|+|.+|+|||+.+..+. ..++||||||++++||+++|++|.+++.+
T Consensus 166 g~l~~~pi~~----~-~~w~v~l~~i~v~g~~~~~~~---------~~~aiiDTGTs~~~lP~~~~~~l~~~~~~----- 226 (316)
T cd05486 166 GQLNWVPVTV----Q-GYWQIQLDNIQVGGTVIFCSD---------GCQAIVDTGTSLITGPSGDIKQLQNYIGA----- 226 (316)
T ss_pred cceEEEECCC----c-eEEEEEeeEEEEecceEecCC---------CCEEEECCCcchhhcCHHHHHHHHHHhCC-----
Confidence 4578999863 1 589999999999999765431 24799999999999999999988765531
Q ss_pred CcccCCCCCCCc-ccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEe--CCCeEEE-EEEe
Q 046564 83 KMIGLAPLAPFG-ARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARI--KRNVMCL-GFLD 153 (160)
Q Consensus 83 ~~~~~~~~~~fd-lCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~--~~~~~CL-a~~~ 153 (160)
.... ..+. .|.+. ..+|+|+|+|.| +.++|++++|++.. .++..|+ +|+.
T Consensus 227 --~~~~--~~~~~~C~~~----------~~~p~i~f~f~g-------~~~~l~~~~y~~~~~~~~~~~C~~~~~~ 280 (316)
T cd05486 227 --TATD--GEYGVDCSTL----------SLMPSVTFTING-------IPYSLSPQAYTLEDQSDGGGYCSSGFQG 280 (316)
T ss_pred --cccC--CcEEEecccc----------ccCCCEEEEECC-------EEEEeCHHHeEEecccCCCCEEeeEEEE
Confidence 1111 1122 47542 147999999965 89999999999875 3456897 4654
No 15
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=99.29 E-value=2.2e-11 Score=101.88 Aligned_cols=113 Identities=16% Similarity=0.229 Sum_probs=81.2
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
+.+.|+|+.. ..+|+|+|++|+||++.... .+..++||||||++++||.++|++|.+++.+
T Consensus 174 g~l~~~~~~~-----~~~w~v~l~~i~vg~~~~~~---------~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~----- 234 (325)
T cd05490 174 GDLHYVNVTR-----KAYWQIHMDQVDVGSGLTLC---------KGGCEAIVDTGTSLITGPVEEVRALQKAIGA----- 234 (325)
T ss_pred CceEEEEcCc-----ceEEEEEeeEEEECCeeeec---------CCCCEEEECCCCccccCCHHHHHHHHHHhCC-----
Confidence 3567888753 15899999999999874321 1235799999999999999999999887742
Q ss_pred CcccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeC--CCeEEEE-EEe
Q 046564 83 KMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIK--RNVMCLG-FLD 153 (160)
Q Consensus 83 ~~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~--~~~~CLa-~~~ 153 (160)
.+.... .-...|.+. ..+|+|+|+|.| +.+.|++++|++... +...|++ |..
T Consensus 235 -~~~~~~-~~~~~C~~~----------~~~P~i~f~fgg-------~~~~l~~~~y~~~~~~~~~~~C~~~~~~ 289 (325)
T cd05490 235 -VPLIQG-EYMIDCEKI----------PTLPVISFSLGG-------KVYPLTGEDYILKVSQRGTTICLSGFMG 289 (325)
T ss_pred -ccccCC-CEEeccccc----------ccCCCEEEEECC-------EEEEEChHHeEEeccCCCCCEEeeEEEE
Confidence 111111 112457643 247999999954 899999999998764 3468985 654
No 16
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=99.24 E-value=8.3e-11 Score=98.92 Aligned_cols=111 Identities=14% Similarity=0.273 Sum_probs=80.9
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
+.+.+||+.. + .+|.|++.+|+||++.+. ....++||||||++++||+++|+++.+++...
T Consensus 179 g~l~~~p~~~----~-~~~~v~~~~i~v~~~~~~----------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~---- 239 (329)
T cd05485 179 GNFTYLPVTR----K-GYWQFKMDSVSVGEGEFC----------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK---- 239 (329)
T ss_pred cceEEEEcCC----c-eEEEEEeeEEEECCeeec----------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCc----
Confidence 4578999853 2 589999999999998653 12347999999999999999999887776321
Q ss_pred CcccCCCCCCC-cccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCC--CeEEEE-EEe
Q 046564 83 KMIGLAPLAPF-GARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKR--NVMCLG-FLD 153 (160)
Q Consensus 83 ~~~~~~~~~~f-dlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~--~~~CLa-~~~ 153 (160)
.... ..+ -.|... ..+|+|+|+|.| +++.+++++|++.+.. ...|+. |+.
T Consensus 240 ---~~~~-~~~~~~C~~~----------~~~p~i~f~fgg-------~~~~i~~~~yi~~~~~~~~~~C~~~~~~ 293 (329)
T cd05485 240 ---PIIG-GEYMVNCSAI----------PSLPDITFVLGG-------KSFSLTGKDYVLKVTQMGQTICLSGFMG 293 (329)
T ss_pred ---cccC-CcEEEecccc----------ccCCcEEEEECC-------EEeEEChHHeEEEecCCCCCEEeeeEEE
Confidence 1111 112 246432 247999999954 8999999999998752 468985 664
No 17
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=99.20 E-value=9.8e-11 Score=98.15 Aligned_cols=111 Identities=13% Similarity=0.185 Sum_probs=80.7
Q ss_pred CcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhcccC
Q 046564 4 LLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKK 83 (160)
Q Consensus 4 ~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~~ 83 (160)
.+.|+|+.. + .+|.|++.+|+||++.+.... ...+||||||++++||.++|+++.+++.++.
T Consensus 176 ~l~~~~~~~----~-~~w~v~l~~i~vg~~~~~~~~---------~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~---- 237 (326)
T cd05487 176 DFHYINTSK----T-GFWQIQMKGVSVGSSTLLCED---------GCTAVVDTGASFISGPTSSISKLMEALGAKE---- 237 (326)
T ss_pred ceEEEECCc----C-ceEEEEecEEEECCEEEecCC---------CCEEEECCCccchhCcHHHHHHHHHHhCCcc----
Confidence 456777642 2 589999999999999765431 2369999999999999999999887773221
Q ss_pred cccCCCCCC-CcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCC--CeEEE-EEEeC
Q 046564 84 MIGLAPLAP-FGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKR--NVMCL-GFLDG 154 (160)
Q Consensus 84 ~~~~~~~~~-fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~--~~~CL-a~~~~ 154 (160)
. ... .-.|... ..+|.|+|+|.| ..+.|++++|++...+ +..|+ +|+..
T Consensus 238 --~---~~~y~~~C~~~----------~~~P~i~f~fgg-------~~~~v~~~~yi~~~~~~~~~~C~~~~~~~ 290 (326)
T cd05487 238 --R---LGDYVVKCNEV----------PTLPDISFHLGG-------KEYTLSSSDYVLQDSDFSDKLCTVAFHAM 290 (326)
T ss_pred --c---CCCEEEecccc----------CCCCCEEEEECC-------EEEEeCHHHhEEeccCCCCCEEEEEEEeC
Confidence 1 111 2347542 257999999954 8999999999987643 56896 77753
No 18
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=99.17 E-value=1.8e-10 Score=96.38 Aligned_cols=101 Identities=12% Similarity=0.225 Sum_probs=76.6
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
+.+.|+|++. ..+|.|.|.+|+|||+.+.+... ...+||||||++++||+++++++.
T Consensus 177 g~l~~~pv~~-----~~~w~v~l~~i~v~g~~~~~~~~--------~~~aivDTGTs~~~lP~~~~~~i~---------- 233 (317)
T cd06098 177 GEHTYVPVTR-----KGYWQFEMGDVLIGGKSTGFCAG--------GCAAIADSGTSLLAGPTTIVTQIN---------- 233 (317)
T ss_pred cceEEEecCc-----CcEEEEEeCeEEECCEEeeecCC--------CcEEEEecCCcceeCCHHHHHhhh----------
Confidence 4578999863 15899999999999998776432 246999999999999998776543
Q ss_pred CcccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCC--CeEEEE-EE
Q 046564 83 KMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKR--NVMCLG-FL 152 (160)
Q Consensus 83 ~~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~--~~~CLa-~~ 152 (160)
.. -.|++.+ .+|+|+|+|.| +.+.|++++|++...+ ...|++ |.
T Consensus 234 --~~-------~~C~~~~----------~~P~i~f~f~g-------~~~~l~~~~yi~~~~~~~~~~C~~~~~ 280 (317)
T cd06098 234 --SA-------VDCNSLS----------SMPNVSFTIGG-------KTFELTPEQYILKVGEGAAAQCISGFT 280 (317)
T ss_pred --cc-------CCccccc----------cCCcEEEEECC-------EEEEEChHHeEEeecCCCCCEEeceEE
Confidence 01 1388642 47999999954 8999999999988753 358975 54
No 19
>PTZ00165 aspartyl protease; Provisional
Probab=99.09 E-value=5.7e-10 Score=99.13 Aligned_cols=111 Identities=20% Similarity=0.271 Sum_probs=82.7
Q ss_pred CcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhcccC
Q 046564 4 LLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKK 83 (160)
Q Consensus 4 ~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~~ 83 (160)
.+.|+|+... .+|.|++++|+||++.+.+... ...+||||||+++++|+++|+++.+++ .
T Consensus 295 ~i~~~Pv~~~-----~yW~i~l~~i~vgg~~~~~~~~--------~~~aIiDTGTSli~lP~~~~~~i~~~i----~--- 354 (482)
T PTZ00165 295 KIWWFPVIST-----DYWEIEVVDILIDGKSLGFCDR--------KCKAAIDTGSSLITGPSSVINPLLEKI----P--- 354 (482)
T ss_pred ceEEEEcccc-----ceEEEEeCeEEECCEEeeecCC--------ceEEEEcCCCccEeCCHHHHHHHHHHc----C---
Confidence 5788998642 5899999999999998776421 246999999999999999999887765 2
Q ss_pred cccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEe----CCCeEEE-EEEeC
Q 046564 84 MIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARI----KRNVMCL-GFLDG 154 (160)
Q Consensus 84 ~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~----~~~~~CL-a~~~~ 154 (160)
.. ..|.+. ..+|+|+|+|.|. .++.+.+.+++++|+++. .++..|+ +|...
T Consensus 355 ~~--------~~C~~~----------~~lP~itf~f~g~--~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~ 410 (482)
T PTZ00165 355 LE--------EDCSNK----------DSLPRISFVLEDV--NGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPM 410 (482)
T ss_pred Cc--------cccccc----------ccCCceEEEECCC--CCceEEEEEchHHeeeecccCCCCCCeEEEEEEEC
Confidence 11 148753 2579999999752 112358999999999975 2356894 78754
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=98.97 E-value=1.6e-09 Score=87.40 Aligned_cols=91 Identities=23% Similarity=0.328 Sum_probs=67.7
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
..+.|+|++.+. + .+|.|.|.+|+|+++... ......+++|||||++++||+++|++|.+++.++...
T Consensus 167 ~~~~~~p~~~~~--~-~~~~v~l~~i~v~~~~~~--------~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~- 234 (283)
T cd05471 167 GDLTYTPVVSNG--P-GYWQVPLDGISVGGKSVI--------SSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS- 234 (283)
T ss_pred CceEEEecCCCC--C-CEEEEEeCeEEECCceee--------ecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc-
Confidence 467899999862 2 589999999999998611 1233568999999999999999999999999766641
Q ss_pred CcccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEc
Q 046564 83 KMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELR 120 (160)
Q Consensus 83 ~~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~ 120 (160)
.+.|+...... ....|.|+|+|.
T Consensus 235 ----------~~~~~~~~~~~-----~~~~p~i~f~f~ 257 (283)
T cd05471 235 ----------SDGGYGVDCSP-----CDTLPDITFTFL 257 (283)
T ss_pred ----------cCCcEEEeCcc-----cCcCCCEEEEEE
Confidence 33444443222 136899999993
No 21
>PTZ00147 plasmepsin-1; Provisional
Probab=98.74 E-value=7.5e-08 Score=85.06 Aligned_cols=110 Identities=12% Similarity=0.141 Sum_probs=76.7
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
..+.|+|+.. . .+|.|.+. +++|+... ...++||||||++++||+++|+++.+++....
T Consensus 304 G~l~y~pl~~----~-~~W~V~l~-~~vg~~~~------------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--- 362 (453)
T PTZ00147 304 GPLTYEKLNH----D-LYWQVDLD-VHFGNVSS------------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--- 362 (453)
T ss_pred CceEEEEcCC----C-ceEEEEEE-EEECCEec------------CceeEEECCCCchhcCCHHHHHHHHHHhCCee---
Confidence 4678999842 1 57889998 57776421 13579999999999999999999888773211
Q ss_pred CcccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCC--CeEEE-EEEeC
Q 046564 83 KMIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKR--NVMCL-GFLDG 154 (160)
Q Consensus 83 ~~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~--~~~CL-a~~~~ 154 (160)
.+..+ .-...|++. .+|+++|+|.| ..+.|++++|+....+ ...|+ +|+..
T Consensus 363 -~~~~~--~y~~~C~~~-----------~lP~~~f~f~g-------~~~~L~p~~yi~~~~~~~~~~C~~~i~~~ 416 (453)
T PTZ00147 363 -VPFLP--LYVTTCNNT-----------KLPTLEFRSPN-------KVYTLEPEYYLQPIEDIGSALCMLNIIPI 416 (453)
T ss_pred -cCCCC--eEEEeCCCC-----------CCCeEEEEECC-------EEEEECHHHheeccccCCCcEEEEEEEEC
Confidence 11111 113468751 37999999976 7899999999876532 35797 57654
No 22
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=98.66 E-value=1.8e-07 Score=82.56 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=73.8
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhccc
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDK 82 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~ 82 (160)
..+.|+|+.. . .+|.|++. +.+|...+ ...++||||||++++||+++++++.+++...
T Consensus 303 G~L~y~pv~~----~-~yW~I~l~-v~~G~~~~------------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~---- 360 (450)
T PTZ00013 303 GNITYEKLNH----D-LYWQIDLD-VHFGKQTM------------QKANVIVDSGTTTITAPSEFLNKFFANLNVI---- 360 (450)
T ss_pred cceEEEEcCc----C-ceEEEEEE-EEECceec------------cccceEECCCCccccCCHHHHHHHHHHhCCe----
Confidence 4578999852 1 47889987 66765432 1356999999999999999987776655211
Q ss_pred CcccCCCCC-CCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeC--CCeEEE-EEEe
Q 046564 83 KMIGLAPLA-PFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIK--RNVMCL-GFLD 153 (160)
Q Consensus 83 ~~~~~~~~~-~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~--~~~~CL-a~~~ 153 (160)
..+... -...|+.. .+|+|+|+|.| ..+.|++++|+.... ++..|+ +|.+
T Consensus 361 ---~~~~~~~y~~~C~~~-----------~lP~i~F~~~g-------~~~~L~p~~Yi~~~~~~~~~~C~~~i~~ 414 (450)
T PTZ00013 361 ---KVPFLPFYVTTCDNK-----------EMPTLEFKSAN-------NTYTLEPEYYMNPLLDVDDTLCMITMLP 414 (450)
T ss_pred ---ecCCCCeEEeecCCC-----------CCCeEEEEECC-------EEEEECHHHheehhccCCCCeeEEEEEE
Confidence 111111 13468641 47999999976 799999999987542 356896 6654
No 23
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=98.36 E-value=6.9e-07 Score=73.17 Aligned_cols=60 Identities=20% Similarity=0.070 Sum_probs=47.8
Q ss_pred CCcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHH
Q 046564 3 GLLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDF 75 (160)
Q Consensus 3 ~~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~ 75 (160)
..+.|+|++.+. .+|.|+|.+|+||++..... ....++|||||++++||.++++++.+++
T Consensus 165 g~l~~~pi~~~~----~~w~v~l~~i~v~~~~~~~~---------~~~~~iiDSGTs~~~lP~~~~~~l~~~l 224 (278)
T cd06097 165 GEISWTPVDNSS----GFWQFTSTSYTVGGDAPWSR---------SGFSAIADTGTTLILLPDAIVEAYYSQV 224 (278)
T ss_pred CceEEEEccCCC----cEEEEEEeeEEECCcceeec---------CCceEEeecCCchhcCCHHHHHHHHHhC
Confidence 468899987642 58999999999999843221 2357999999999999999998877665
No 24
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=98.33 E-value=2e-06 Score=70.54 Aligned_cols=111 Identities=23% Similarity=0.340 Sum_probs=78.4
Q ss_pred CcccccCcccCCCCCcceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHHHHHHHHHhcccC
Q 046564 4 LLIKIPLISTLAFRSDDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNALAKDFAKRAFDKK 83 (160)
Q Consensus 4 ~~~~TPL~~~~~~~s~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~~~~~~~~~ 83 (160)
.++++|+.. ..+|-|.+.+|+++++....... -.++||||+++.+||.++|+.+.+++......
T Consensus 168 ~~~~~~~~~-----~~~w~v~~~~i~i~~~~~~~~~~---------~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-- 231 (317)
T PF00026_consen 168 DLVWVPLVS-----SGYWSVPLDSISIGGESVFSSSG---------QQAILDTGTSYIYLPRSIFDAIIKALGGSYSD-- 231 (317)
T ss_dssp EEEEEEBSS-----TTTTEEEEEEEEETTEEEEEEEE---------EEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC--
T ss_pred ceeccCccc-----ccccccccccccccccccccccc---------eeeecccccccccccchhhHHHHhhhcccccc--
Confidence 467788871 15799999999999993322211 13999999999999999999998888544431
Q ss_pred cccCCCCCCCcccccccCCCccCCCCCCcCeEEEEEcCCCCCCCceEEEEecCceEEEeCCC--eEEEE-EEe
Q 046564 84 MIGLAPLAPFGARFNTKNVATTKNAGPAVPTMDLELRGIGNSSSNTYWRICGANSMARIKRN--VMCLG-FLD 153 (160)
Q Consensus 84 ~~~~~~~~~fdlCy~~s~~~~~~~~~~~vP~v~l~F~g~~~~~~g~~~~l~~~n~~~~~~~~--~~CLa-~~~ 153 (160)
-+|....... ...|.++++|.+ ..+.+++.+|+...... ..|.. |..
T Consensus 232 -----------~~~~~~c~~~-----~~~p~l~f~~~~-------~~~~i~~~~~~~~~~~~~~~~C~~~i~~ 281 (317)
T PF00026_consen 232 -----------GVYSVPCNST-----DSLPDLTFTFGG-------VTFTIPPSDYIFKIEDGNGGYCYLGIQP 281 (317)
T ss_dssp -----------SEEEEETTGG-----GGSEEEEEEETT-------EEEEEEHHHHEEEESSTTSSEEEESEEE
T ss_pred -----------eeEEEecccc-----cccceEEEeeCC-------EEEEecchHhcccccccccceeEeeeec
Confidence 1222221110 147999999976 79999999999887543 37854 444
No 25
>PF13650 Asp_protease_2: Aspartyl protease
Probab=91.07 E-value=0.36 Score=31.92 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=24.1
Q ss_pred EEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHH
Q 046564 27 SIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNAL 71 (160)
Q Consensus 27 gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l 71 (160)
-++|+|+++. .+||||.+.+.+.++.++.+
T Consensus 2 ~v~vng~~~~---------------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 2 PVKVNGKPVR---------------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEECCEEEE---------------EEEcCCCCcEEECHHHHHHc
Confidence 3678887553 78999999999998887666
No 26
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=89.10 E-value=0.68 Score=31.49 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=25.5
Q ss_pred EEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHH
Q 046564 27 SIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNAL 71 (160)
Q Consensus 27 gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l 71 (160)
-+.|+|+++. +.||||.+.+.+.+..|..+
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 4678999875 67999999999999888765
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=85.26 E-value=2.1 Score=28.41 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=23.5
Q ss_pred EEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHH
Q 046564 27 SIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNAL 71 (160)
Q Consensus 27 gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l 71 (160)
.+.||++++. ++||||.+.|.+..+..+.+
T Consensus 6 ~v~i~~~~~~---------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR---------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 4678877654 78999999999998766554
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=83.02 E-value=2.5 Score=30.65 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=26.6
Q ss_pred cceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHH
Q 046564 19 DDYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNAL 71 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l 71 (160)
.+|++. ++|+|+++. .+||||.+.|.++++.-+.+
T Consensus 10 g~~~v~---~~InG~~~~---------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNVR---------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEEE---------------EEEECCCCcEEcCHHHHHHc
Confidence 467665 578998543 78999999999998766544
No 29
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=77.88 E-value=3.8 Score=27.62 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=23.8
Q ss_pred EEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHH
Q 046564 28 IKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNAL 71 (160)
Q Consensus 28 IsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l 71 (160)
+.|+|+++. .++|||...|.|.+...+.+
T Consensus 3 v~InG~~~~---------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV---------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE---------------EEEECCCCeEEECHHHhhhc
Confidence 677888654 78999999999998877654
No 30
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=77.21 E-value=4.7 Score=26.38 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=17.8
Q ss_pred eEEeccccceeechHHHHHH
Q 046564 52 AKISTFTPYAVLHSAIYNAL 71 (160)
Q Consensus 52 ~iiDSGt~~T~L~~~~Y~~l 71 (160)
.+||||.+.++++....+.|
T Consensus 22 alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 22 ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEeCCCcceecCHHHHHHh
Confidence 78999999999998887766
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=73.59 E-value=5.5 Score=28.78 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=22.6
Q ss_pred EEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHH
Q 046564 27 SIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNA 70 (160)
Q Consensus 27 gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~ 70 (160)
.++|+|+++. .+||||.+.|++.++.-+.
T Consensus 20 ~~~Ing~~~~---------------~LvDTGAs~s~Is~~~a~~ 48 (124)
T cd05479 20 NVEINGVPVK---------------AFVDSGAQMTIMSKACAEK 48 (124)
T ss_pred EEEECCEEEE---------------EEEeCCCceEEeCHHHHHH
Confidence 3567888654 7899999999999877554
No 32
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=72.88 E-value=4.5 Score=27.54 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=22.2
Q ss_pred EEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHH
Q 046564 26 KSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIY 68 (160)
Q Consensus 26 ~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y 68 (160)
.-|.++|+.+. ++||||...|++++..+
T Consensus 8 i~v~i~g~~i~---------------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 8 ITVKINGKKIK---------------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEETTEEEE---------------EEEETTBSSEEESSGGS
T ss_pred EEEeECCEEEE---------------EEEecCCCcceeccccc
Confidence 45778888654 78999999999997643
No 33
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=66.48 E-value=12 Score=27.71 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=24.2
Q ss_pred ceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceeechHHHHHH
Q 046564 20 DYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVLHSAIYNAL 71 (160)
Q Consensus 20 ~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L~~~~Y~~l 71 (160)
.+||+ ++|+|+++. ++||||+..|.+.....+.+
T Consensus 24 mLyI~---~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 24 MLYIN---CKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp --EEE---EEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred eEEEE---EEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 46665 679999875 67999999999998877663
No 34
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=64.47 E-value=9.1 Score=26.45 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=18.4
Q ss_pred eEEeccccceeechHHHHHHH
Q 046564 52 AKISTFTPYAVLHSAIYNALA 72 (160)
Q Consensus 52 ~iiDSGt~~T~L~~~~Y~~l~ 72 (160)
+.+|||...+.||...|+.+-
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 779999999999988887664
No 35
>PF15409 PH_8: Pleckstrin homology domain
Probab=59.35 E-value=21 Score=24.86 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=39.3
Q ss_pred ceEEEeEEEEECCEEeeecCcccccccCCCCceEEeccccceee---chHHHHHHHHHHHH
Q 046564 20 DYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGAKISTFTPYAVL---HSAIYNALAKDFAK 77 (160)
Q Consensus 20 ~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~iiDSGt~~T~L---~~~~Y~~l~~a~~~ 77 (160)
.||.+-.+..+-|. ++|..+...+++. ..-+.||||..+-.| .+.-++.=++|+++
T Consensus 29 sYy~~~~~~~~rGs-i~v~~a~is~~~~-~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~ 87 (89)
T PF15409_consen 29 SYYRNQNSGKLRGS-IDVSLAVISANKK-SRRIDIDSGDEIWHLKAKSQEDFQRWVSALQK 87 (89)
T ss_pred EEEecCCCCeeEeE-EEccceEEEecCC-CCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHh
Confidence 48887777766666 5777666666543 457999999998887 45666666666654
No 36
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=58.02 E-value=7.5 Score=28.89 Aligned_cols=19 Identities=32% Similarity=0.284 Sum_probs=17.2
Q ss_pred EEecccc-ceeechHHHHHH
Q 046564 53 KISTFTP-YAVLHSAIYNAL 71 (160)
Q Consensus 53 iiDSGt~-~T~L~~~~Y~~l 71 (160)
+||||.+ ++.||+++|+++
T Consensus 30 LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 30 LIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred EEecCCceeEEeCHHHHHhc
Confidence 7999999 999999998765
No 37
>PHA02087 hypothetical protein
Probab=41.94 E-value=21 Score=23.92 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=17.1
Q ss_pred EEECCEEeeecCcccccccCCCCceEEecc
Q 046564 28 IKVDGKVVSFDTSLLSIDSGAVGGAKISTF 57 (160)
Q Consensus 28 IsVgg~~l~i~~~~~~~~~~G~GG~iiDSG 57 (160)
+--+|+.+.+|.+ .|.||+++|--
T Consensus 50 vdsdg~~ielpe~------~ggggi~fdde 73 (83)
T PHA02087 50 VDSDGVKIELPES------EGGGGITFDDE 73 (83)
T ss_pred EcCCCcEEECCcc------cCCCceeeccH
Confidence 3446777887744 67899999853
No 38
>PF02753 PapD_C: Pili assembly chaperone PapD, C-terminal domain; InterPro: IPR016148 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the C-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of eight strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2UY7_C 2UY6_A 2W07_A 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 1PDK_A 2XG4_A ....
Probab=38.51 E-value=33 Score=21.79 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=10.8
Q ss_pred cceEEEeEEEEEC
Q 046564 19 DDYFINLKSIKVD 31 (160)
Q Consensus 19 ~~YyV~l~gIsVg 31 (160)
+-|||.|..|.++
T Consensus 7 TPy~vtl~~~~~~ 19 (68)
T PF02753_consen 7 TPYYVTLSSLKLN 19 (68)
T ss_dssp SSS-EEEEEEEET
T ss_pred CCcEEEEEeeeec
Confidence 4599999999999
No 39
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=33.52 E-value=21 Score=26.56 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=28.4
Q ss_pred ceEEEeEEEEECCE-EeeecC--ccc------cccc-CCCCceEEeccccceeechHHHHHHHHHH
Q 046564 20 DYFINLKSIKVDGK-VVSFDT--SLL------SIDS-GAVGGAKISTFTPYAVLHSAIYNALAKDF 75 (160)
Q Consensus 20 ~YyV~l~gIsVgg~-~l~i~~--~~~------~~~~-~G~GG~iiDSGt~~T~L~~~~Y~~l~~a~ 75 (160)
.|-+=|.||-|||+ ++++.. ..| .+.. --+|++||++...-.-|...+=+.|.+.|
T Consensus 3 ~yiaLLRGINVGG~nki~MaeLr~~l~~~Gf~~V~Tyi~SGNvvf~~~~~~~~l~~~ie~~l~~~f 68 (137)
T PF08002_consen 3 TYIALLRGINVGGKNKIKMAELREALEDLGFTNVRTYIQSGNVVFESDRDPAELAAKIEKALEERF 68 (137)
T ss_dssp EEEEEESS-SBTTBS---HHHHHHHHHHCT-EEEEEETTTTEEEEEESS-HHHHHHHHHHHHHHH-
T ss_pred eEEEEEcceecCCCCcccHHHHHHHHHHcCCCCceEEEeeCCEEEecCCChHHHHHHHHHHHHHhc
Confidence 47777899999996 577642 111 1100 12578888866665555555444444444
No 40
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=33.32 E-value=37 Score=27.94 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=15.6
Q ss_pred cceEEEeEEEEECCEEee
Q 046564 19 DDYFINLKSIKVDGKVVS 36 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l~ 36 (160)
+-|||+|..|+|||+.+.
T Consensus 191 TPYyitl~~l~v~~~~i~ 208 (246)
T PRK15233 191 TSSYVNIANIKSGNLSFN 208 (246)
T ss_pred CCcEEEeEeEEECCcccC
Confidence 469999999999999764
No 41
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=31.89 E-value=43 Score=27.15 Aligned_cols=17 Identities=24% Similarity=0.690 Sum_probs=15.2
Q ss_pred cceEEEeEEEEECCEEe
Q 046564 19 DDYFINLKSIKVDGKVV 35 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l 35 (160)
+-||+++..+.+||+.+
T Consensus 166 TPyyitl~~l~v~~~~~ 182 (229)
T PRK15211 166 TPYYFAVTGVKLNGQPV 182 (229)
T ss_pred CCcEEEeEeEEECCeec
Confidence 46999999999999976
No 42
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=31.80 E-value=39 Score=27.58 Aligned_cols=17 Identities=35% Similarity=0.772 Sum_probs=15.0
Q ss_pred cceEEEeEEEEECCEEe
Q 046564 19 DDYFINLKSIKVDGKVV 35 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l 35 (160)
+-|||+|..+.+||+.+
T Consensus 177 TPYyvtl~~l~~~~~~~ 193 (237)
T PRK15224 177 TPFYMNLASVTVGGKPI 193 (237)
T ss_pred CCcEEEeEeEEECCccc
Confidence 46999999999999975
No 43
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=29.18 E-value=44 Score=23.54 Aligned_cols=21 Identities=24% Similarity=0.082 Sum_probs=15.4
Q ss_pred ceEEecccccee-echHHHHHH
Q 046564 51 GAKISTFTPYAV-LHSAIYNAL 71 (160)
Q Consensus 51 G~iiDSGt~~T~-L~~~~Y~~l 71 (160)
-.+||||.+-.. |+.+..+.+
T Consensus 18 ~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 18 RALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEECCCCeEEecCHHHHHHc
Confidence 388999998775 887665443
No 44
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=28.85 E-value=49 Score=26.87 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=14.9
Q ss_pred cceEEEeEEEEECCEEe
Q 046564 19 DDYFINLKSIKVDGKVV 35 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l 35 (160)
+-|||++..+.|||+.+
T Consensus 172 TPyyvtl~~l~v~~~~~ 188 (228)
T PRK15188 172 SPYYVSMVELYSAGKKL 188 (228)
T ss_pred CCcEEEEEEEEECCccc
Confidence 46999999999999865
No 45
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=27.96 E-value=1.5e+02 Score=23.74 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=25.0
Q ss_pred ceEEEeEEEEECCEEeeecCcccccccCCCCce
Q 046564 20 DYFINLKSIKVDGKVVSFDTSLLSIDSGAVGGA 52 (160)
Q Consensus 20 ~YyV~l~gIsVgg~~l~i~~~~~~~~~~G~GG~ 52 (160)
.-.|++.+|.++|..+|+.-++|+. +|--|.
T Consensus 102 Rl~i~I~SI~~~~~IipV~L~vYD~--DG~eGl 132 (200)
T PF12508_consen 102 RLLITITSIEYGGNIIPVELSVYDL--DGQEGL 132 (200)
T ss_pred EEEEEEEEEEECCEEEEEEEEEECC--CCCccc
Confidence 4678999999999999998787764 565565
No 46
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=27.18 E-value=49 Score=27.07 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=14.9
Q ss_pred cceEEEeEEEEECCEEe
Q 046564 19 DDYFINLKSIKVDGKVV 35 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l 35 (160)
+-|||++..|.+||+.+
T Consensus 182 TPyyvtl~~l~~~~~~~ 198 (242)
T PRK15253 182 TANWITVTDVKAGNTKI 198 (242)
T ss_pred CCcEEEeEeeEECCccc
Confidence 46999999999999865
No 47
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=25.38 E-value=75 Score=22.82 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=15.4
Q ss_pred eEEeccccceeechHHHHH
Q 046564 52 AKISTFTPYAVLHSAIYNA 70 (160)
Q Consensus 52 ~iiDSGt~~T~L~~~~Y~~ 70 (160)
..||||+..|.+.++--+.
T Consensus 12 AfVDsGaQ~timS~~caer 30 (103)
T cd05480 12 ALVDTGCQYNLISAACLDR 30 (103)
T ss_pred EEEecCCchhhcCHHHHHH
Confidence 6699999999998765544
No 48
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=23.74 E-value=91 Score=21.01 Aligned_cols=16 Identities=13% Similarity=-0.112 Sum_probs=13.8
Q ss_pred eEEeccccceeechHH
Q 046564 52 AKISTFTPYAVLHSAI 67 (160)
Q Consensus 52 ~iiDSGt~~T~L~~~~ 67 (160)
++||||+..+.++..-
T Consensus 14 ~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 14 VLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEEeCCCCCEEEeCCC
Confidence 8899999999998653
No 49
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=23.64 E-value=68 Score=26.13 Aligned_cols=17 Identities=41% Similarity=0.835 Sum_probs=14.8
Q ss_pred cceEEEeEEEEECCEEe
Q 046564 19 DDYFINLKSIKVDGKVV 35 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l 35 (160)
+-|||++..|.++++.+
T Consensus 175 TPyyvtl~~l~~~~~~~ 191 (236)
T PRK11385 175 TPYYINLIQVSVNGKAL 191 (236)
T ss_pred CCcEEEEEeEEECCccc
Confidence 46999999999999864
No 50
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=22.88 E-value=73 Score=25.63 Aligned_cols=17 Identities=6% Similarity=0.378 Sum_probs=14.5
Q ss_pred cceEEEeEEEEECCEEe
Q 046564 19 DDYFINLKSIKVDGKVV 35 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l 35 (160)
+-||++|..++++|+.+
T Consensus 166 tpy~vtl~~l~~~g~~~ 182 (228)
T PRK15208 166 SAFNLTFNQFYANGRDI 182 (228)
T ss_pred CccEEEEEEEEECCccc
Confidence 46999999999998854
No 51
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=22.85 E-value=63 Score=19.27 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=16.9
Q ss_pred eEEeccccceeechHHHHHH
Q 046564 52 AKISTFTPYAVLHSAIYNAL 71 (160)
Q Consensus 52 ~iiDSGt~~T~L~~~~Y~~l 71 (160)
+++|+|.+.+.+..+.++.+
T Consensus 12 ~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 12 ALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEcCCCcccccCHHHHHHc
Confidence 78999999999999887643
No 52
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=22.70 E-value=70 Score=26.06 Aligned_cols=17 Identities=12% Similarity=0.446 Sum_probs=14.6
Q ss_pred cceEEEeEEEEECCEEe
Q 046564 19 DDYFINLKSIKVDGKVV 35 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l 35 (160)
+-|||++..+.+||+.+
T Consensus 170 TPyyvtl~~l~v~~~~~ 186 (234)
T PRK15192 170 TPYYVTLFLLRANERAQ 186 (234)
T ss_pred CCcEEEEEeEEEcCccc
Confidence 46999999999999853
No 53
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=22.08 E-value=78 Score=20.62 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=14.9
Q ss_pred echHHHHHHHHHHHHHhc
Q 046564 63 LHSAIYNALAKDFAKRAF 80 (160)
Q Consensus 63 L~~~~Y~~l~~a~~~~~~ 80 (160)
||..++++|.+++.+++.
T Consensus 1 lp~ga~~AL~~EL~kRl~ 18 (65)
T PF06183_consen 1 LPAGALEALESELTKRLH 18 (65)
T ss_dssp --TTHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 688999999999999987
No 54
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=21.81 E-value=83 Score=25.32 Aligned_cols=17 Identities=24% Similarity=0.628 Sum_probs=14.5
Q ss_pred cceEEEeEEEEECCEEe
Q 046564 19 DDYFINLKSIKVDGKVV 35 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l 35 (160)
+-|||+|..+.++++.+
T Consensus 165 tPyyitl~~l~~~~~~~ 181 (226)
T PRK15295 165 TPYYMNFASVTLNSHEV 181 (226)
T ss_pred CceEEEEEEEEECCccc
Confidence 46999999999998754
No 55
>PF13619 KTSC: KTSC domain
Probab=21.54 E-value=75 Score=19.94 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=18.2
Q ss_pred eEEeccccceee--chHHHHHHHHH
Q 046564 52 AKISTFTPYAVL--HSAIYNALAKD 74 (160)
Q Consensus 52 ~iiDSGt~~T~L--~~~~Y~~l~~a 74 (160)
+.+.+|..|.|. |+.+|+.|..|
T Consensus 20 V~F~~G~~Y~Y~~Vp~~~~~~l~~A 44 (60)
T PF13619_consen 20 VEFKSGSVYRYFGVPPEVYEALLNA 44 (60)
T ss_pred EEEcCCCEEEECCCCHHHHHHHHcC
Confidence 567888888776 88999888765
No 56
>PRK15290 lfpB fimbrial chaperone protein; Provisional
Probab=21.09 E-value=81 Score=25.81 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.6
Q ss_pred cceEEEeEEEEECCEEe
Q 046564 19 DDYFINLKSIKVDGKVV 35 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l 35 (160)
+-||+++..+.++|+.+
T Consensus 184 tPyyvtl~~l~v~g~~~ 200 (243)
T PRK15290 184 NPIHISVMDVIVDGHDV 200 (243)
T ss_pred CcEEEEEEEEeecCccc
Confidence 46999999999998854
No 57
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=20.80 E-value=91 Score=25.17 Aligned_cols=17 Identities=18% Similarity=0.575 Sum_probs=14.3
Q ss_pred cceEEEeEEEEECCEEe
Q 046564 19 DDYFINLKSIKVDGKVV 35 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l 35 (160)
+-||+++..++++|+.+
T Consensus 171 tPy~vtl~~l~v~~~~i 187 (229)
T PRK15195 171 SPYYVTLVNLQVGSQKL 187 (229)
T ss_pred CceEEEEEEEEECCccc
Confidence 46999999999998754
No 58
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=20.77 E-value=85 Score=25.19 Aligned_cols=17 Identities=24% Similarity=0.620 Sum_probs=14.5
Q ss_pred cceEEEeEEEEECCEEe
Q 046564 19 DDYFINLKSIKVDGKVV 35 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~~l 35 (160)
+-||++|..++++++.+
T Consensus 168 tpy~vtl~~l~~~~~~~ 184 (227)
T PRK15299 168 TPYYMNFATLSVGSQKV 184 (227)
T ss_pred CccEEEEEeEEECCccc
Confidence 46999999999998754
No 59
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=20.68 E-value=83 Score=25.69 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=13.4
Q ss_pred cceEEEeEEEEECCE
Q 046564 19 DDYFINLKSIKVDGK 33 (160)
Q Consensus 19 ~~YyV~l~gIsVgg~ 33 (160)
+-|||+|..|.++|+
T Consensus 162 TPYyitl~~l~~~~~ 176 (239)
T PRK15254 162 TPYYITVAWLGADRS 176 (239)
T ss_pred CceEEEeeeEEecCc
Confidence 469999999999995
Done!