BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046567
(246 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53632|PAP2_YEAST Poly(A) RNA polymerase protein 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PAP2 PE=1 SV=1
Length = 584
Score = 102 bits (253), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 80/128 (62%), Gaps = 5/128 (3%)
Query: 113 EIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDID-VV 171
EI DF ++SP+ +E E+RN + + + +K +WP VFGS+ T LYLP SDID VV
Sbjct: 182 EIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDCVV 241
Query: 172 IMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSG----VSFDIRHF 227
E G L +L+ L ++ +A +++V+AKARVPI+KFVE SG VSF+ +
Sbjct: 242 TSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIDVSFERTNG 301
Query: 228 MDICRVIR 235
++ ++IR
Sbjct: 302 IEAAKLIR 309
>sp|Q9HFW3|TRF5_ASHGO Poly(A) RNA polymerase protein 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TRF5
PE=3 SV=1
Length = 626
Score = 101 bits (251), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 8/174 (4%)
Query: 71 GVDDVEEVEPKTPPAKSAEPRMENRWFKGNSRFKSPMLQLHKEIVDFCDFLSPTSDEREV 130
V+D E+ + P + P ++N +SR + L EI DF ++SP E ++
Sbjct: 159 AVEDAEDESSEPLPTNADYPWIQNH---DHSRQREIADWLTLEIKDFVSYISPNKTEIQL 215
Query: 131 RNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVI-MESGIHNPATGLQALSR 189
RN A++ + D ++ WP FGS+ T LYLP SDID V+ +SG + L +L+
Sbjct: 216 RNDALKRIRDAVQDFWPDANLHCFGSYATDLYLPGSDIDCVVNSKSGDKDNKNALYSLAS 275
Query: 190 ALLQRGIAKKIQVIAKARVPIVKFVEKKSGV----SFDIRHFMDICRVIRMVCH 239
L + G+A ++ VIAKARVPI+KFVE S + SF+ + ++ ++IR H
Sbjct: 276 YLKRNGLATQVSVIAKARVPIIKFVEPASQIHIDLSFERTNGVEAAKIIRGWLH 329
>sp|Q68ED3|PAPD5_MOUSE PAP-associated domain-containing protein 5 OS=Mus musculus GN=Papd5
PE=2 SV=2
Length = 633
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 11/146 (7%)
Query: 96 WFKGNSRFKSPMLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFG 155
W + N + ++ LH+EI DF +++SP +E ++R V + VIK +WP ++FG
Sbjct: 122 WKRRN--YNQGVVGLHEEISDFYEYMSPRPEEEKMRMEVVSRIESVIKELWPSADVQIFG 179
Query: 156 SFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKK--IQVIAKARVPIVK- 212
SF+TGLYLPTSDID+V+ + P L L AL + +A + ++V+ KA VPI+K
Sbjct: 180 SFKTGLYLPTSDIDLVVFGKWENLP---LWTLEEALRKHKVADEDSVKVLDKATVPIIKL 236
Query: 213 ---FVEKKSGVSFDIRHFMDICRVIR 235
F E K +SF++++ + +I+
Sbjct: 237 TDSFTEVKVDISFNVQNGVRAADLIK 262
>sp|Q8NDF8|PAPD5_HUMAN PAP-associated domain-containing protein 5 OS=Homo sapiens GN=PAPD5
PE=1 SV=2
Length = 572
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 11/146 (7%)
Query: 96 WFKGNSRFKSPMLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFG 155
W + N + ++ LH+EI DF +++SP +E ++R V + VIK +WP ++FG
Sbjct: 108 WKRRN--YNQGVVGLHEEISDFYEYMSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFG 165
Query: 156 SFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKK--IQVIAKARVPIVK- 212
SF+TGLYLPTSDID+V+ + P L L AL + +A + ++V+ KA VPI+K
Sbjct: 166 SFKTGLYLPTSDIDLVVFGKWENLP---LWTLEEALRKHKVADEDSVKVLDKATVPIIKL 222
Query: 213 ---FVEKKSGVSFDIRHFMDICRVIR 235
F E K +SF++++ + +I+
Sbjct: 223 TDSFTEVKVDISFNVQNGVRAADLIK 248
>sp|Q9UTN3|CID14_SCHPO Poly(A) RNA polymerase cid14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid14 PE=1 SV=2
Length = 684
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 2/117 (1%)
Query: 110 LHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDID 169
H++I+ F D+++PT +E VR T V + + WP VFGSF T LYLPTSD+D
Sbjct: 241 FHQDILHFIDYITPTPEEHAVRKTLVSRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLD 300
Query: 170 VVIMESGIHNPAT--GLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDI 224
+VI+ H T + L+ L + +A ++QVI A VPI+KFV+ + V DI
Sbjct: 301 LVIISPEHHYRGTKKDMFVLAHHLKKLKLASEVQVITTANVPIIKFVDPLTKVHVDI 357
>sp|P48561|TRF5_YEAST Poly(A) RNA polymerase protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TRF5 PE=1 SV=2
Length = 642
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 110 LHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDID 169
L EI DF ++SP+ +E + RN ++ + +K +W VFGSF T LYLP SDID
Sbjct: 176 LTSEIKDFVHYISPSKNEIKCRNRTIDKLRRAVKELWSDADLHVFGSFATDLYLPGSDID 235
Query: 170 VVIMESGIHNPATG-LQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKS----GVSFDI 224
V+ + L+R L +G+A +++VI K RVPI+KF+E +S VSF+
Sbjct: 236 CVVNSRNRDKEDRNYIYELARHLKNKGLAIRMEVIVKTRVPIIKFIEPQSQLHIDVSFER 295
Query: 225 RHFMDICRVIR 235
+ ++ ++IR
Sbjct: 296 TNGLEAAKLIR 306
>sp|Q5XG87|PAPD7_HUMAN DNA polymerase sigma OS=Homo sapiens GN=PAPD7 PE=1 SV=2
Length = 542
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
Query: 121 LSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNP 180
+SP +E +R V+ + V+K +WP ++FGSF TGLYLPTSDID+V+ P
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 60
Query: 181 ATGLQALSRALLQRGIAK--KIQVIAKARVPIVKFVEKKSGVSFDIRHFMD 229
LQ L +AL + +A+ I+V+ KA VPI+K ++++ V DI M+
Sbjct: 61 ---LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNME 108
>sp|Q6PB75|PAPD7_MOUSE DNA polymerase sigma OS=Mus musculus GN=Papd7 PE=2 SV=1
Length = 542
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
Query: 121 LSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNP 180
+SP +E +R V+ + V+K +WP ++FGSF TGLYLPTSDID+V+ P
Sbjct: 1 MSPCPEEAAMRREVVKRIETVVKDLWPTADVQIFGSFSTGLYLPTSDIDLVVFGKWERPP 60
Query: 181 ATGLQALSRALLQRGIAK--KIQVIAKARVPIVKFVEKKSGVSFDIRHFMD 229
LQ L +AL + +A+ I+V+ KA VPI+K ++++ V DI M+
Sbjct: 61 ---LQLLEQALRKHNVAEPCSIKVLDKATVPIIKLTDQETEVKVDISFNME 108
>sp|G5EFL0|GLD4_CAEEL Poly(A) RNA polymerase gld-4 OS=Caenorhabditis elegans GN=gld-4
PE=1 SV=1
Length = 845
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 67/126 (53%), Gaps = 3/126 (2%)
Query: 102 RFKSPMLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPK--CKPEVFGSFRT 159
R+ + LH+EIVD ++ P E +R E V D + W + K +FGS RT
Sbjct: 72 RYGLNIQGLHEEIVDMYHWIKPNEIESRLRTKVFEKVRDSVLRRWKQKTIKISMFGSLRT 131
Query: 160 GLYLPTSDIDVVI-MESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKS 218
L+LPTSDIDV++ + + P L +R L IA+ + V A VPIVK V++ +
Sbjct: 132 NLFLPTSDIDVLVECDDWVGTPGDWLAETARGLEADNIAESVMVYGGAFVPIVKMVDRDT 191
Query: 219 GVSFDI 224
+S DI
Sbjct: 192 RLSIDI 197
>sp|Q5BLK4|TUT7_MOUSE Terminal uridylyltransferase 7 OS=Mus musculus GN=Zcchc6 PE=1 SV=3
Length = 1491
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 117 FCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESG 176
+ DF SPT E + R + + IK +P K +FGS + G SD+DV + +G
Sbjct: 1005 YKDF-SPTIVEDQAREHIRQNLESFIKQDFPGTKLSLFGSSKNGFGFKQSDLDVCMTING 1063
Query: 177 IHNPATGL------QALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHF 227
H A GL + L+R L + + I I A+VPIVKF +SG+ DI +
Sbjct: 1064 -HETAEGLDCVRTIEELARVLRKHSGLRNILPITTAKVPIVKFFHLRSGLEVDISLY 1119
>sp|Q5VYS8|TUT7_HUMAN Terminal uridylyltransferase 7 OS=Homo sapiens GN=ZCCHC6 PE=1 SV=1
Length = 1495
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 117 FCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESG 176
+ DF SPT E + R + + I+ +P K +FGS + G SD+DV + +G
Sbjct: 1009 YKDF-SPTIIEDQAREHIRQNLESFIRQDFPGTKLSLFGSSKNGFGFKQSDLDVCMTING 1067
Query: 177 IHNPATGL------QALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDI 224
+ A GL + L+R L + + I I A+VPIVKF +SG+ DI
Sbjct: 1068 LET-AEGLDCVRTIEELARVLRKHSGLRNILPITTAKVPIVKFFHLRSGLEVDI 1120
>sp|O13833|CID1_SCHPO Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=cid1 PE=1 SV=2
Length = 405
Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 71 GVDDVEEVEPKTPPAKSAEPRMENRWFKGNSRFKSPMLQLHKEIVDFC----DFLSPTSD 126
GV VEE+E AE K S K P HKE FC + + +
Sbjct: 11 GVHTVEEIE--------AEIHKNLHISKSCSYQKVP--NSHKEFTKFCYEVYNEIKISDK 60
Query: 127 EREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDV-VIMESGIHNPATGLQ 185
E + + A++ + +K I P + FGS +GL L SD+D+ V+M+S + + LQ
Sbjct: 61 EFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQ 120
Query: 186 ALSRALLQRGIAKKIQVIAKARVPIVKFV-EKKSGVSFDIRHFMDICRVIRMVCHTWGLV 244
L+ G K + +AR+PI+K + K+G F DI R+ H L+
Sbjct: 121 -FYEELIAEGFEGKF--LQRARIPIIKLTSDTKNG--FGASFQCDIGFNNRLAIHNTLLL 175
>sp|Q5TAX3|TUT4_HUMAN Terminal uridylyltransferase 4 OS=Homo sapiens GN=ZCCHC11 PE=1 SV=3
Length = 1644
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 13/151 (8%)
Query: 106 PMLQLHKEIVDFC-----DFLSPTSDEREVRNTAVEAVFDVIKYIW-PKCKPEVFGSFRT 159
PM +EI+D D LSP E+ R + + I+ + K + +FGS +
Sbjct: 942 PMTNRFREILDLVCKRCFDELSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKN 1001
Query: 160 GLYLPTSDIDVVIMESGIHNPATGL------QALSRALLQRGIAKKIQVIAKARVPIVKF 213
G SD+D+ + G H A L + L++ L + + I I A+VPIVKF
Sbjct: 1002 GFGFRDSDLDICMTLEG-HENAEKLNCKEIIENLAKILKRHPGLRNILPITTAKVPIVKF 1060
Query: 214 VEKKSGVSFDIRHFMDICRVIRMVCHTWGLV 244
++SG+ DI + + + + T+ +
Sbjct: 1061 EHRRSGLEGDISLYNTLAQHNTRMLATYAAI 1091
Score = 39.3 bits (90), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Query: 124 TSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVI-MESGIHNPAT 182
T D+ VR VE + VI P+C ++GS T L +SD+++ I +++P
Sbjct: 369 TDDDLRVRQEIVEEMSKVITTFLPECSLRLYGSSLTRFALKSSDVNIDIKFPPKMNHPDL 428
Query: 183 GLQALSRALLQRGIAKK------IQVIAKARVPIVKFVEKKSGVSFDIRHFMDICRVIR- 235
++ L GI KK ++ A+VP+V ++KSG+ +CRV
Sbjct: 429 LIKVL-------GILKKNVLYVDVESDFHAKVPVVVCRDRKSGL---------LCRVSAG 472
Query: 236 --MVCHTWGLV 244
M C T L+
Sbjct: 473 NDMACLTTDLL 483
>sp|B2RX14|TUT4_MOUSE Terminal uridylyltransferase 4 OS=Mus musculus GN=Zcchc11 PE=1 SV=2
Length = 1644
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 13/151 (8%)
Query: 106 PMLQLHKEIVDFC-----DFLSPTSDEREVRNTAVEAVFDVIKYIW-PKCKPEVFGSFRT 159
PM +EI+D D LSP E+ R + + I+ + K + +FGS +
Sbjct: 959 PMTNRFREILDLVCKRCFDELSPPCSEQHNREQILIGLEKFIQKEYDEKARLCLFGSSKN 1018
Query: 160 GLYLPTSDIDVVIMESGIHNPATGL------QALSRALLQRGIAKKIQVIAKARVPIVKF 213
G SD+D+ + G H A L + L++ L + + I I A+VPIVKF
Sbjct: 1019 GFGFRDSDLDICMTLEG-HENAEKLNCKEIIENLAKILKRHPGLRNILPITTAKVPIVKF 1077
Query: 214 VEKKSGVSFDIRHFMDICRVIRMVCHTWGLV 244
++SG+ DI + + + + T+ +
Sbjct: 1078 EHRRSGLEGDISLYNTLAQHNTRMLATYAAI 1108
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 14/126 (11%)
Query: 124 TSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVI-MESGIHNPAT 182
T D+ +R VE + VI P+C ++GS T L +SD+++ I +++P
Sbjct: 389 TDDDLRIRQDIVEEMSKVIMTFLPECSLRLYGSSLTKFALKSSDVNIDIKFPPKMNHPDL 448
Query: 183 GLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFMDICRVIR---MVCH 239
+Q L L + + ++ A+VP+V ++KS + +CRV M C
Sbjct: 449 LIQVLG-ILKKSALYIDVESDFHAKVPVVVCKDRKSAL---------LCRVSAGNDMACL 498
Query: 240 TWGLVG 245
T L+
Sbjct: 499 TTDLLA 504
>sp|Q503I9|GLD2_DANRE Poly(A) RNA polymerase GLD2 OS=Danio rerio GN=papd4 PE=2 SV=1
Length = 489
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
Query: 109 QLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDI 168
+L ++I++ SD+ E + + A+ I+ I+P K + GS G +SD
Sbjct: 161 KLSQQILNLFFACEQQSDDLEKKESCRAALQTDIQKIFPCAKVFLGGSSLNGFGSRSSDA 220
Query: 169 DV-VIMESGIHN---PATGLQALSRALLQR-GIAKKIQVIAKARVPIVKFVEKKSGVSFD 223
D+ +++E G N A + +L R LL + +K Q+I +A+VPIVKF ++ SGV FD
Sbjct: 221 DLCLVIEEGPVNHRKDAVYVLSLVRKLLYKLSYIEKPQLI-RAKVPIVKFRDRISGVEFD 279
Query: 224 I 224
+
Sbjct: 280 L 280
>sp|O74326|CID11_SCHPO Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid11 PE=3 SV=1
Length = 478
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 121 LSPTSDEREVRNTAVEAVFDVIKYIWPKCKPE--VFGSFRTGLYLPTSDIDVVIMESGIH 178
L P+++E R V+ + ++ K + VFGS L + SD+DV I+ +G
Sbjct: 58 LKPSNEEVSRRQQFVDKLRTILSTEIKDAKLDLFVFGSTENNLAIQQSDVDVCIITNGSK 117
Query: 179 NPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFMDICRV 233
+ Q L++ L G+ K+I +++ARVPIVK + + + D+ D+ ++
Sbjct: 118 YLNSTCQ-LAQLLYSYGM-KQIVCVSRARVPIVKIWDPQFDIHCDLNINNDVAKI 170
>sp|Q6DFA8|GLD2B_XENLA Poly(A) RNA polymerase GLD2-B OS=Xenopus laevis GN=papd4-b PE=1
SV=1
Length = 509
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 109 QLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDI 168
+L K+I+D L + + ++ + I+ I+P+ + + GS G + +SD
Sbjct: 182 KLSKQILDLFQALQQQVCDLKKKDICRAELQREIQQIFPQSRLYLVGSSLNGFGIRSSDA 241
Query: 169 DV--VIMESGIHNPATGLQALSRALLQRGIAKKIQVI-----AKARVPIVKFVEKKSGVS 221
D+ V+ E ++ LS LL + ++ I +A+VPIVKF +K SG
Sbjct: 242 DLCLVLKEEPMNQNTEARHILS--LLHKHFYTRLSYIERPQFIRAKVPIVKFRDKVSGAE 299
Query: 222 FDI 224
FD+
Sbjct: 300 FDL 302
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 153 VFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVK 212
+GS+R G+Y P SDID +++ + Q L L +R + + A VPI+K
Sbjct: 85 TYGSYRLGVYGPGSDIDTLVVVPKHVSRDNFFQDLEPMLREREEVTDLAAVPDAYVPIIK 144
Query: 213 FVEKKSGVSFDI 224
F K G+S D+
Sbjct: 145 F--KFLGISIDL 154
>sp|Q641A1|GLD2A_XENLA Poly(A) RNA polymerase GLD2-A OS=Xenopus laevis GN=papd4-a PE=1
SV=1
Length = 509
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 7/122 (5%)
Query: 109 QLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDI 168
+L ++I+D L + + ++ + I+ I+P+ + + GS G SD
Sbjct: 182 KLSQQILDLFQALQQQVCDIKKKDICRAELQREIQQIFPQSRLYLVGSSLNGFGTRISDA 241
Query: 169 DV--VIMESGI--HNPATGLQALSRALLQRGIA--KKIQVIAKARVPIVKFVEKKSGVSF 222
D+ V+ E + H AT + L L ++ +++Q I +A+VPIVKF +K SG F
Sbjct: 242 DLCLVLKEEPMNQHTEATQILGLLHKLFYTRLSYIERLQFI-RAKVPIVKFRDKVSGAEF 300
Query: 223 DI 224
D+
Sbjct: 301 DL 302
>sp|Q5FND4|GATB_GLUOX Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Gluconobacter oxydans (strain 621H) GN=gatB PE=3 SV=1
Length = 485
Score = 37.7 bits (86), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 58 PAQDFFSLDVNESGVDDVEEVEPKTPPAKSAEPRMENRWFKGNSRFKSPMLQLHKEIVDF 117
P D L + +S VD+++ P+ P AK A R+E + G SR++S +L + + I DF
Sbjct: 283 PDPDLLPLVIEQSWVDELKAALPELPEAKRA--RLEQEY--GVSRYESSVLCVEQAIADF 338
Query: 118 CDFLSPTSDEREVRN 132
+ ++ +D R N
Sbjct: 339 YETVARGADARLAAN 353
>sp|O74518|CID12_SCHPO Poly(A) RNA polymerase cid12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid12 PE=1 SV=1
Length = 336
Score = 37.4 bits (85), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 114 IVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIM 173
+ F +F+SP +E + R +E + I+ + + +V+GS G L SD+DV
Sbjct: 24 LYSFLEFVSPKIEELKYRKLLLEKLQTHIREVVLDAELQVYGSMYIGTTLSISDVDV--- 80
Query: 174 ESGIHNPATGLQALSRA--LLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFMD-I 230
+ +P G R +L++ + + ARVP + V+ SG+ D+ D
Sbjct: 81 --SLKSPRVGELEKRRVTMVLRKYLDADADFHSSARVPRINLVD-VSGIGVDLTFGNDKA 137
Query: 231 CRVIRM 236
CR +
Sbjct: 138 CRTAEL 143
>sp|Q0VFA3|GLD2_XENTR Poly(A) RNA polymerase GLD2 OS=Xenopus tropicalis GN=papd4 PE=2
SV=1
Length = 528
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 31/207 (14%)
Query: 28 QSPPPDELDHYTV-FRNEISLTDLHCAAEESPAQDFFSLDVNESGVDDVEEVEPKTPPAK 86
QSP ++H V R DL C+ SPA P P K
Sbjct: 136 QSPQEQTVNHQAVPLRG-----DLGCSYPGSPAFPLLQ--------------SPSPPVLK 176
Query: 87 SAEPRMENRWFKGNSRFKSPMLQ--LHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKY 144
P W + P+ + L K+I++ L + + ++ + I+
Sbjct: 177 GHVPNSGECWLYDHVDTTLPVAKDKLSKQILELFQALQQQVCDLKKKDICRAELQREIQQ 236
Query: 145 IWPKCKPEVFGSFRTGLYLPTSDIDV--VIMESGIHNPATGLQALSRALLQRGIAKKIQV 202
I+P+ + + GS G +SD D+ V+ + ++ LS LL + ++
Sbjct: 237 IFPQSRLYLVGSSLNGFGTRSSDADLCLVLKDEPMNQHTEARHILS--LLHKHFYTRLSY 294
Query: 203 IA-----KARVPIVKFVEKKSGVSFDI 224
I KA+VPIVKF +K SG FD+
Sbjct: 295 IERPQFIKAKVPIVKFRDKVSGAEFDL 321
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 154 FGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKF 213
FGS+R G+Y P SDID +++ + + L R ++I + A VPI+K
Sbjct: 86 FGSYRLGVYGPGSDIDTLVVVPKHVSRNDFFEVFYELLKGRSELEEIAPVPDAFVPIIKI 145
Query: 214 VEKKSGVSFD-IRHFMDICRVIR 235
+ +G+S D I +DI RV R
Sbjct: 146 --EFAGISIDLIFARLDIPRVPR 166
>sp|Q9UT49|CID13_SCHPO Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid13 PE=1 SV=1
Length = 578
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 129 EVRNTAVEAVFDVIKYIWP--KCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQA 186
E R V+ + ++K +P K +FGS ++ L SDID+ I+ T +
Sbjct: 70 ERRYAFVQKLEQILKKEFPYKNIKTSLFGSTQSLLASNASDIDLCIITDPPQCAPTTCE- 128
Query: 187 LSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFD 223
+S A + G+ KK+ I+ A+VPIVK + + +S D
Sbjct: 129 VSAAFARNGL-KKVVCISTAKVPIVKVWDSELQLSCD 164
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 153 VFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVK 212
FGS+R G+Y P SDID +++ + + +R ++I + A VPI+K
Sbjct: 85 TFGSYRLGVYGPGSDIDTLVVVPKHVTRDDFFSVFADIIRKRPELEEIACVPDAYVPIIK 144
Query: 213 FVEKKSGVSFDI 224
+ G+S D+
Sbjct: 145 L--EFDGISIDL 154
>sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cid16 PE=4 SV=1
Length = 1202
Score = 34.3 bits (77), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 130 VRNTAVEAVFDVIKYIWPK----CKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQ 185
VR TA++A+ + K K FGS+RTGL SD+D+VI S L
Sbjct: 899 VRTTAMKAIIKKLLKSLRKLEGPVKIACFGSYRTGLMTKNSDLDLVIYSS----KEALLP 954
Query: 186 ALSRALLQRGIAK----KIQVIAKARVPIVKFVEKKS---GVSFD 223
R + I K + I AR+PI+KF + + +SFD
Sbjct: 955 YYDRV---KSIIKNEFSNVMPIRGARIPIIKFTGQYNIHCDLSFD 996
>sp|Q12018|CDC53_YEAST Cell division control protein 53 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC53 PE=1 SV=1
Length = 815
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 141 VIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKI 200
++K++WP C+ E+ +P + V + + I L+ +Q G + I
Sbjct: 598 ILKWLWPLCRGELKADIGKPGRMPF-NFTVTLFQMAILLLYNDADVLTLENIQEGTSLTI 656
Query: 201 QVIAKARVPIVKF 213
Q IA A VP +KF
Sbjct: 657 QHIAAAMVPFIKF 669
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 154 FGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKF 213
+GS+R G++ P SDID +++ L +R +I + A VPI+K
Sbjct: 87 YGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKELDEIAPVPDAFVPIIKI 146
Query: 214 VEKKSGVSFDI 224
K SG+S D+
Sbjct: 147 --KFSGISIDL 155
>sp|Q8BYH3|TRM13_MOUSE tRNA:m(4)X modification enzyme TRM13 homolog OS=Mus musculus
GN=Trmt13 PE=2 SV=1
Length = 481
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 38 YTVFRNEISLTDLHCAAEESPAQDFFSLDVNESGVDDVEEVEPKTPPAKSAEPRMEN 94
+TV+ ++++ C + E P DFF D+N D+ E E P + +E ++EN
Sbjct: 65 HTVYEDQLAKHLKKCNSREKPKPDFFIQDINAGLKDETEIPEQLVPFSSLSEEQLEN 121
>sp|B1MC92|UVRC_MYCA9 UvrABC system protein C OS=Mycobacterium abscessus (strain ATCC
19977 / DSM 44196) GN=uvrC PE=3 SV=1
Length = 671
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 109 QLHKEIV-DFCDFLSPTSD------EREVRNTAVEAVFD 140
Q H+EIV DFCDFLS +D ERE+ A E F+
Sbjct: 190 QEHREIVLDFCDFLSGKTDRLARDMEREMNQAAQELNFE 228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,981,402
Number of Sequences: 539616
Number of extensions: 3865269
Number of successful extensions: 9779
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 9739
Number of HSP's gapped (non-prelim): 54
length of query: 246
length of database: 191,569,459
effective HSP length: 114
effective length of query: 132
effective length of database: 130,053,235
effective search space: 17167027020
effective search space used: 17167027020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)