Query 046567
Match_columns 246
No_of_seqs 145 out of 1255
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 13:25:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05402 NT_PAP_TUTase Nucleoti 99.9 1.8E-26 3.9E-31 181.7 14.2 109 130-238 1-111 (114)
2 KOG1906 DNA polymerase sigma [ 99.9 1.9E-24 4E-29 209.6 18.1 148 96-243 49-202 (514)
3 COG5260 TRF4 DNA polymerase si 99.9 1.5E-23 3.2E-28 200.4 16.4 142 102-244 49-196 (482)
4 PTZ00418 Poly(A) polymerase; P 99.6 2.1E-14 4.6E-19 141.6 17.1 121 105-227 65-203 (593)
5 KOG2245 Poly(A) polymerase and 99.4 4.5E-12 9.8E-17 122.3 11.9 120 107-228 30-167 (562)
6 COG5186 PAP1 Poly(A) polymeras 99.1 9.1E-10 2E-14 103.5 10.4 120 107-228 22-159 (552)
7 KOG2277 S-M checkpoint control 98.9 9.5E-09 2.1E-13 101.4 10.4 135 110-244 114-258 (596)
8 PF01909 NTP_transf_2: Nucleot 98.5 1E-07 2.2E-12 71.4 4.4 44 135-178 1-44 (93)
9 cd05397 NT_Pol-beta-like Nucle 98.4 4.3E-07 9.3E-12 62.2 5.4 41 133-173 2-42 (49)
10 TIGR03671 cca_archaeal CCA-add 98.3 7E-06 1.5E-10 78.8 12.6 63 115-177 3-70 (408)
11 cd05400 NT_2-5OAS_ClassI-CCAas 98.3 9.5E-06 2.1E-10 65.9 11.6 78 147-227 26-111 (143)
12 PRK13300 tRNA CCA-pyrophosphor 98.2 1.7E-05 3.7E-10 77.0 13.3 105 114-224 3-117 (447)
13 cd05403 NT_KNTase_like Nucleot 98.2 1.2E-05 2.7E-10 59.4 8.8 46 134-179 3-49 (93)
14 COG1746 CCA1 tRNA nucleotidylt 97.6 0.0007 1.5E-08 65.3 12.1 68 110-177 3-75 (443)
15 COG1669 Predicted nucleotidylt 97.5 0.00053 1.2E-08 53.7 8.3 73 131-205 7-79 (97)
16 COG1708 Predicted nucleotidylt 97.5 0.00042 9.1E-09 53.9 7.8 38 138-175 16-53 (128)
17 PRK13746 aminoglycoside resist 97.2 0.0014 2.9E-08 59.8 8.4 46 135-180 13-60 (262)
18 PF14792 DNA_pol_B_palm: DNA p 96.0 0.028 6.2E-07 44.7 6.9 67 133-200 9-79 (112)
19 PRK02098 phosphoribosyl-dephos 95.1 0.13 2.9E-06 45.8 8.5 42 134-177 108-155 (221)
20 TIGR03135 malonate_mdcG holo-A 95.0 0.075 1.6E-06 46.7 6.5 42 134-177 96-143 (202)
21 cd00141 NT_POLXc Nucleotidyltr 92.9 2 4.3E-05 39.9 12.2 91 133-228 145-239 (307)
22 PF10620 MdcG: Phosphoribosyl- 92.2 0.76 1.6E-05 40.6 8.0 45 132-178 102-152 (213)
23 KOG3793 Transcription factor N 90.5 1.6 3.5E-05 40.4 8.4 73 106-178 37-117 (362)
24 PF14091 DUF4269: Domain of un 89.5 3.6 7.8E-05 34.8 9.2 75 149-228 16-91 (152)
25 PRK05007 PII uridylyl-transfer 89.3 3.5 7.5E-05 43.7 11.0 30 148-177 80-109 (884)
26 cd05401 NT_GlnE_GlnD_like Nucl 89.3 2.4 5.2E-05 35.3 8.1 29 148-176 55-83 (172)
27 PRK01293 phosphoribosyl-dephos 88.6 2.3 5E-05 37.6 7.8 67 133-202 96-168 (207)
28 KOG2534 DNA polymerase IV (fam 87.9 2.9 6.3E-05 39.5 8.2 63 133-196 156-219 (353)
29 PRK00227 glnD PII uridylyl-tra 85.6 4 8.6E-05 42.2 8.6 65 128-193 5-71 (693)
30 PF03445 DUF294: Putative nucl 84.4 7.5 0.00016 31.7 8.3 49 148-196 49-103 (138)
31 PF10127 Nuc-transf: Predicted 82.8 1.2 2.6E-05 39.6 3.2 43 131-173 2-45 (247)
32 smart00483 POLXc DNA polymeras 81.6 20 0.00044 33.6 11.0 46 132-178 148-193 (334)
33 COG2413 Predicted nucleotidylt 81.5 3.1 6.8E-05 37.0 5.1 44 128-174 20-63 (228)
34 PRK01759 glnD PII uridylyl-tra 77.7 14 0.00031 39.0 9.5 29 149-177 57-85 (854)
35 TIGR01693 UTase_glnD [Protein- 73.1 17 0.00037 38.2 8.7 31 147-177 42-72 (850)
36 PRK04374 PII uridylyl-transfer 71.3 36 0.00079 36.2 10.6 28 149-176 73-100 (869)
37 COG2844 GlnD UTP:GlnB (protein 70.7 46 0.00099 35.4 10.9 32 149-180 67-98 (867)
38 PRK03381 PII uridylyl-transfer 67.9 15 0.00032 38.5 6.8 28 149-176 58-85 (774)
39 PF04928 PAP_central: Poly(A) 65.0 16 0.00035 33.2 5.8 41 106-146 18-60 (254)
40 PHA02603 nrdC.11 hypothetical 64.7 3.7 8E-05 38.8 1.6 21 151-171 6-26 (330)
41 cd02068 radical_SAM_B12_BD B12 64.3 22 0.00047 27.9 5.8 55 135-193 55-112 (127)
42 PF09970 DUF2204: Nucleotidyl 63.1 82 0.0018 26.9 9.5 41 134-176 4-48 (181)
43 PRK00275 glnD PII uridylyl-tra 62.6 68 0.0015 34.2 10.6 29 149-177 79-107 (895)
44 COG1665 Predicted nucleotidylt 61.1 10 0.00023 35.2 3.7 30 146-175 119-148 (315)
45 PRK03059 PII uridylyl-transfer 61.0 24 0.00053 37.4 6.9 29 148-176 61-89 (856)
46 PF03296 Pox_polyA_pol: Poxvir 59.0 31 0.00067 29.0 5.8 108 106-227 4-126 (149)
47 COG3541 Predicted nucleotidylt 54.2 6.5 0.00014 35.8 1.2 19 155-173 17-35 (248)
48 PF12633 Adenyl_cycl_N: Adenyl 53.6 34 0.00074 30.3 5.6 28 149-176 98-125 (204)
49 COG1796 POL4 DNA polymerase IV 52.6 1.5E+02 0.0032 28.2 9.9 85 134-228 166-250 (326)
50 PF03710 GlnE: Glutamate-ammon 49.1 61 0.0013 28.9 6.7 44 149-192 128-178 (247)
51 PRK05092 PII uridylyl-transfer 48.4 1.2E+02 0.0025 32.6 9.6 28 149-176 106-133 (931)
52 PHA02996 poly(A) polymerase la 45.2 44 0.00094 32.7 5.2 68 105-174 120-196 (467)
53 KOG2708 Predicted metalloprote 44.8 1.8E+02 0.004 26.8 8.9 97 123-235 42-166 (336)
54 PRK08609 hypothetical protein; 44.7 89 0.0019 31.6 7.7 42 134-176 161-202 (570)
55 cd05398 NT_ClassII-CCAase Nucl 43.6 1.7E+02 0.0037 23.8 8.0 70 147-228 15-86 (139)
56 PF07528 DZF: DZF domain; Int 38.4 58 0.0013 29.5 4.8 38 154-192 2-40 (248)
57 PF04229 GrpB: GrpB protein; 37.9 79 0.0017 26.5 5.3 43 149-196 33-76 (167)
58 smart00572 DZF domain in DSRM 33.2 1.7E+02 0.0037 26.6 7.0 64 150-214 4-72 (246)
59 PRK14109 bifunctional glutamin 32.8 1.3E+02 0.0029 32.5 7.2 27 149-175 724-750 (1007)
60 PRK14109 bifunctional glutamin 32.3 1.6E+02 0.0034 32.0 7.6 27 149-175 216-242 (1007)
61 PRK03333 coaE dephospho-CoA ki 29.6 3.4E+02 0.0074 26.0 8.7 86 106-196 178-284 (395)
62 PF06183 DinI: DinI-like famil 24.5 73 0.0016 23.0 2.5 33 130-162 5-37 (65)
63 PF07796 DUF1638: Protein of u 23.9 1.3E+02 0.0027 25.1 4.2 27 147-173 29-58 (166)
64 COG4773 FhuE Outer membrane re 22.6 75 0.0016 33.1 2.9 76 127-204 91-166 (719)
65 PF14907 NTP_transf_5: Unchara 22.6 4.9E+02 0.011 22.2 9.3 69 148-228 71-145 (249)
66 cd00755 YgdL_like Family of ac 20.1 3.1E+02 0.0067 24.3 6.1 77 136-212 68-187 (231)
No 1
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=99.94 E-value=1.8e-26 Score=181.68 Aligned_cols=109 Identities=32% Similarity=0.478 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCC-CChhHHHHHHHHHHHhCCCcceEEEecCCCc
Q 046567 130 VRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGI-HNPATGLQALSRALLQRGIAKKIQVIAKARV 208 (246)
Q Consensus 130 ~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~-~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARV 208 (246)
.|++++++|+++++++||++++++|||+++|+++|+||||++|..+.. ...+..+..+++.|++.+.+.+++.|.+|||
T Consensus 1 ~r~~i~~~l~~~i~~~~~~~~v~~fGS~~~g~~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~~ArV 80 (114)
T cd05402 1 KREEVLDRLQELIKEWFPGAKLYPFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLAKLLKKSGEVVEVEPIINARV 80 (114)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEecccccCCCCCCCCeeEEEEeCCCCccHHHHHHHHHHHHHhCCCceeeEEeccCCC
Confidence 488999999999999999999999999999999999999999998865 4456789999999999887789999999999
Q ss_pred eeEEEEEcCCCeEEEEEeecc-hHHHHHHHH
Q 046567 209 PIVKFVEKKSGVSFDIRHFMD-ICRVIRMVC 238 (246)
Q Consensus 209 PIIKf~d~~tgI~~DISfnn~-g~~~~r~~~ 238 (246)
|||||+++.+|+.|||||+|. |.+.++++.
T Consensus 81 Piik~~~~~~~i~~Dis~~~~~g~~~s~li~ 111 (114)
T cd05402 81 PIIKFVDKPTGIEVDISFNNLNGIRNTKLLR 111 (114)
T ss_pred CEEEEEEcCCCeEEEEEcccchHHHHHHHHH
Confidence 999999999999999999995 455555443
No 2
>KOG1906 consensus DNA polymerase sigma [Replication, recombination and repair]
Probab=99.92 E-value=1.9e-24 Score=209.64 Aligned_cols=148 Identities=34% Similarity=0.505 Sum_probs=120.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecC
Q 046567 96 WFKGNSRFKSPMLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMES 175 (246)
Q Consensus 96 W~~~~~~~~~~~~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~ 175 (246)
|......++....+|++||.+|+++|.|+.+|.+.|..+++.++++|+..||.|+|++|||+.|||+||+|||||++...
T Consensus 49 ~~~~~~~~~~~s~~l~~eI~~fv~~l~pt~~e~~~R~~~~~~i~~~v~~~~~~a~v~~FGS~~tglyLP~sDIDl~v~~~ 128 (514)
T KOG1906|consen 49 IHCHSSPSNLVSERLRNEILDFVQYLIPTPEEIEVRSELVEKIRDVVKQKWPDASVYVFGSVPTGLYLPDSDIDLVVLSK 128 (514)
T ss_pred CceeeccCchhHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcccceeEEeeeeeccccccccceEEEEecc
Confidence 43333334678899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCChhHH--HHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeecc----hHHHHHHHHHhccC
Q 046567 176 GIHNPATG--LQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFMD----ICRVIRMVCHTWGL 243 (246)
Q Consensus 176 ~~~~~~~~--L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn~----g~~~~r~~~~~~~~ 243 (246)
........ ...++..+...+....|.+|.+||||||||++..+||++|||||+. +++.++.+.+.+++
T Consensus 129 ~~~~~e~~~~~~~l~~~~e~~~~~~~v~~v~karvpiik~~d~~s~i~vDISFn~~~G~~aa~~i~~~~~~~p~ 202 (514)
T KOG1906|consen 129 FLNDKEDRAVKLELALELEEDNSAFHVKVVQKARVPIIKFKDPVSNIHVDISFNQTNGVKAAKFIKDFLRDHPF 202 (514)
T ss_pred cccCchhhHHHHHHHHhhhhccccceEEEeeeeeeeeEEeecCccceEEEeeecccCchhHHHHHHHHHhcCcc
Confidence 43332222 2333444444566678999999999999999999999999999995 34455555555544
No 3
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.5e-23 Score=200.39 Aligned_cols=142 Identities=30% Similarity=0.503 Sum_probs=120.4
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCC--C
Q 046567 102 RFKSPMLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIH--N 179 (246)
Q Consensus 102 ~~~~~~~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~--~ 179 (246)
.++.....|+.||.+|+.+|+|+.+|.+.|.++++.|++++++.||++.+++|||+.+||++|.||||+||..+... +
T Consensus 49 ~~~~~~~~lt~el~~~y~~I~ps~eEl~~R~~~leklr~~lk~~~pda~l~vFGS~~t~L~l~~SDiDl~I~s~~~~~~e 128 (482)
T COG5260 49 VFNEESDELTSELLEFYDYIAPSDEELKRRKALLEKLRTLLKKEFPDADLKVFGSTETGLALPKSDIDLCIISDPRGYKE 128 (482)
T ss_pred hhhhhHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHhCCccceeEecccccccccCcccccEEEecCCccccc
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999885432 2
Q ss_pred hhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeecc----hHHHHHHHHHhccCC
Q 046567 180 PATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFMD----ICRVIRMVCHTWGLV 244 (246)
Q Consensus 180 ~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn~----g~~~~r~~~~~~~~~ 244 (246)
....+ .++..+...+.+.++++|.+||||||||++..+|++|||+|||. +++++|.|....+.+
T Consensus 129 t~~~~-~l~~~l~~~~~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~~~~~~akl~~~~~~~~P~l 196 (482)
T COG5260 129 TRNAG-SLASHLFKKNLAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNAKLIRSYLKEDPRL 196 (482)
T ss_pred cccHH-HHHHHHHHhccCeeeEEEEecccceEEEecCccceEEEeecCchhHHHHHHHHHHHHhcCccc
Confidence 22223 56666666566678999999999999999999999999999995 566667666666654
No 4
>PTZ00418 Poly(A) polymerase; Provisional
Probab=99.61 E-value=2.1e-14 Score=141.63 Aligned_cols=121 Identities=23% Similarity=0.350 Sum_probs=106.6
Q ss_pred chHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhh----------------CCCceEEEecccccCCCCCCC
Q 046567 105 SPMLQLHKEIVDFCDF--LSPTSDEREVRNTAVEAVFDVIKYI----------------WPKCKPEVFGSFRTGLYLPTS 166 (246)
Q Consensus 105 ~~~~~L~~EI~~f~~~--l~Pt~eE~~~R~~ii~~l~~vv~~~----------------~P~~~V~~FGS~~tGL~lp~S 166 (246)
..-...+.+|..+++. +-|+++|.+.|+.++..|+++++++ -.+++|++|||+..|.+.|+|
T Consensus 65 ~~d~~~s~~L~~~L~~~~~fes~ee~~kR~~vL~~L~~iv~~wv~~vs~~k~~~~~~~~~~~g~I~tfGSYrLGV~~pgS 144 (593)
T PTZ00418 65 EEDLKLSNELINLLKSYNLYETEEGKKKRERVLGSLNKLVREFVVEASIEQGINEEEASQISGKLFTFGSYRLGVVAPGS 144 (593)
T ss_pred hHHHhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHhcCCeEEEEeccccccCCCCCC
Confidence 3456778888888865 5699999999999999999999773 135899999999999999999
Q ss_pred CceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEee
Q 046567 167 DIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHF 227 (246)
Q Consensus 167 DIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfn 227 (246)
|||+++++|..-....++..+...|++..-++++..|..|+||||||. ..||+|||.|.
T Consensus 145 DID~L~V~P~~vtredFF~~f~~~L~~~~~V~eL~~V~~A~VPiIk~~--~~GI~iDL~fa 203 (593)
T PTZ00418 145 DIDTLCLAPRHITRESFFSDFYAKLQQDPNITKLQPVPDAYTPVIKFV--YDGIDIDLLFA 203 (593)
T ss_pred cccEEEECCCCCCHHHHHHHHHHHHhcCCCcceeeccCccccCeEEEE--ECCEEEeeeec
Confidence 999999999877777888999999999888899999999999999996 47999999997
No 5
>KOG2245 consensus Poly(A) polymerase and related nucleotidyltransferases [RNA processing and modification]
Probab=99.37 E-value=4.5e-12 Score=122.29 Aligned_cols=120 Identities=23% Similarity=0.342 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhh---------CC-------CceEEEecccccCCCCCCCCc
Q 046567 107 MLQLHKEIVDFCDF--LSPTSDEREVRNTAVEAVFDVIKYI---------WP-------KCKPEVFGSFRTGLYLPTSDI 168 (246)
Q Consensus 107 ~~~L~~EI~~f~~~--l~Pt~eE~~~R~~ii~~l~~vv~~~---------~P-------~~~V~~FGS~~tGL~lp~SDI 168 (246)
-..|+.+++...+- +-.+++|...|..++..|.++++++ +| ++++.+||||..|.+.|++||
T Consensus 30 d~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p~~~~~~aggkIftfGSYRLGVhg~GADI 109 (562)
T KOG2245|consen 30 DIALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLPDGMIENAGGKIFTFGSYRLGVHGPGADI 109 (562)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCceEEeccceeecccCCCCCc
Confidence 34566666655532 4478899999999999999999874 23 489999999999999999999
Q ss_pred eEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeec
Q 046567 169 DVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFM 228 (246)
Q Consensus 169 Dl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn 228 (246)
|-.+++|.+-+..+++..+...|+....++++..+..|.|||||| +-.||.+||-|..
T Consensus 110 DtLcV~Prhv~R~DFF~sf~~mL~~~~eVteL~~V~dAfVPiikf--Kf~GI~IDllfAr 167 (562)
T KOG2245|consen 110 DTLCVGPRHVSRSDFFTSFYDMLKERPEVTELHAVEDAFVPIIKF--KFDGIEIDLLFAR 167 (562)
T ss_pred ceeeeccccccHHHHHHHHHHHHhcCccccccccccccccceEEE--EecCeeeeeeehh
Confidence 988888888777889999999999988889999999999999999 4689999998874
No 6
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification]
Probab=99.06 E-value=9.1e-10 Score=103.55 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhhC----------------CCceEEEecccccCCCCCCCCc
Q 046567 107 MLQLHKEIVDFCDF--LSPTSDEREVRNTAVEAVFDVIKYIW----------------PKCKPEVFGSFRTGLYLPTSDI 168 (246)
Q Consensus 107 ~~~L~~EI~~f~~~--l~Pt~eE~~~R~~ii~~l~~vv~~~~----------------P~~~V~~FGS~~tGL~lp~SDI 168 (246)
-..|+.++..-++. .--++.|-+.|.+++..++.++++.. -+.+++.|||+..|.+-|+|||
T Consensus 22 En~Ln~~li~eLk~~g~FE~~~E~~~Rv~VL~~Lq~~~~eFV~~vs~~K~m~dgmar~aGGKIFTyGSYRLGVhgpGsDI 101 (552)
T COG5186 22 ENRLNGELIKELKERGFFEDDKEGQTRVRVLGKLQFMVREFVARVSRNKGMGDGMARPAGGKIFTYGSYRLGVHGPGSDI 101 (552)
T ss_pred HhhhhHHHHHHHHHcCCcCCchhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCceeeeecceeeeccCCCCCc
Confidence 34566666554432 23467788899999999988887642 2479999999999999999999
Q ss_pred eEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeec
Q 046567 169 DVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFM 228 (246)
Q Consensus 169 Dl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn 228 (246)
|-.++.|.+-...+++..+...|+....++++-.|+.|-|||||++ -.||++|+-|..
T Consensus 102 DtLvvVPkHVsR~dFFt~f~~~Lrer~ei~eva~vpDAfVPIIK~K--F~GIsIDLifAR 159 (552)
T COG5186 102 DTLVVVPKHVSRSDFFTHFYEELRERPEIEEVAKVPDAFVPIIKLK--FQGISIDLIFAR 159 (552)
T ss_pred ceEEEecccccHHHHHHHHHHHhccCcchhhhccCCcccceeEEEE--ecCccceeeeee
Confidence 9888888766777889999999999888899999999999999994 589999998874
No 7
>KOG2277 consensus S-M checkpoint control protein CID1 and related nucleotidyltransferases [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=9.5e-09 Score=101.38 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEE--EecccccCCCCCCCCceEEEecCCC--CC----hh
Q 046567 110 LHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPE--VFGSFRTGLYLPTSDIDVVIMESGI--HN----PA 181 (246)
Q Consensus 110 L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~--~FGS~~tGL~lp~SDIDl~I~~~~~--~~----~~ 181 (246)
|...+...+....+.......+......++.++...+|.+... .|||..+|+....+|+|+++..... .. ..
T Consensus 114 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~gs~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~ 193 (596)
T KOG2277|consen 114 LDPQLNELLESFKLPHSDVKTRKLILDKLRALASLLFPDSILSLYLFGSSDLGLGERSSDLDLCVDFTSSFLSFEKIKGL 193 (596)
T ss_pred hchhhhhhhhccCCCccccchHHHHHHHHHHHHHHhcCCCcceeeccCcccccccccccCcceeecccccccccchhhhH
Confidence 7778888888888888899999999999999999999986665 9999999999999999977765422 21 23
Q ss_pred HHHHHHHHHHHhCCC--cceEEEecCCCceeEEEEEcCCCeEEEEEeecchHHHHHHHHHhccCC
Q 046567 182 TGLQALSRALLQRGI--AKKIQVIAKARVPIVKFVEKKSGVSFDIRHFMDICRVIRMVCHTWGLV 244 (246)
Q Consensus 182 ~~L~~L~~~L~~~~~--~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn~g~~~~r~~~~~~~~~ 244 (246)
..+..+++.+..... +..++.|..|||||||+.|..+++.||++++|.-+..+..+.+.++..
T Consensus 194 ~~~~l~~~~~~~~~~~~~~~~~~i~~A~vPiik~~~~~~~~~~d~s~~n~~~~~nS~ll~~~~~~ 258 (596)
T KOG2277|consen 194 EILKLLAKCLASLLEEGVREVQQILSARVPIIKFNDSGSGLECDLSVNNSDAILNSQLLRNYSEI 258 (596)
T ss_pred HHHHHHHHHHHhccccccceeeeeeecCCCEEEecCCCCCCceeeeeccchhhhhhHHHHHhHhc
Confidence 456667777765432 567888889999999999999999999999996555555555555443
No 8
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis. Sequence and secondary structure comparisons of regions surrounding these aspartates with sequences of other polymerases revealed a significant homology to the palm structure of DNA polymerase beta, terminal deoxynucleotidyltransferase and DNA polymerase IV of Saccharomyces cerevisiae, all members of the family X of polymerases. This homology extends as far as cca: tRNA nucleotidyltransferase and streptomycin adenylyltransferase, an antibiotic resistance factor [, ]. Proteins containing this domain include kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase inactivates antibiotics by catalysing the addition of a nucleotidyl group onto the drug. In experiments, Mn2+ strongly stimulated this reaction due to a 50-fold lower Ki for 8-azido-ATP in the presence of Mn2+. Mutations of the highly conserved Asp residues 113, 115, and 167, critical for metal binding in the catalytic domain of bovine poly(A) polymerase, led to a strong reduction of cross-linking efficiency, and Mn2+ no longer stimulated the reaction. Mutations in the region of the "helical turn motif" (a domain binding the triphosphate moiety of the nucleotide) and in the suspected nucleotide-binding helix of bovine poly(A) polymerase impaired ATP binding and catalysis. The results indicate that ATP is bound in part by the helical turn motif and in part by a region that may be a structural analogue of the fingers domain found in many polymerases.; GO: 0016779 nucleotidyltransferase activity; PDB: 4EBK_B 4EBJ_A 1KNY_A 2B4V_A 2B56_A 2B51_A 1NO5_B 1Q79_A 1Q78_A 1F5A_A ....
Probab=98.53 E-value=1e-07 Score=71.41 Aligned_cols=44 Identities=27% Similarity=0.493 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCC
Q 046567 135 VEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIH 178 (246)
Q Consensus 135 i~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~ 178 (246)
|+++.+.+++.++.+.+++|||+++|.+.|+||||++|..+...
T Consensus 1 i~~i~~~l~~~~~~~~v~lfGS~a~g~~~~~SDIDl~i~~~~~~ 44 (93)
T PF01909_consen 1 IEEIKEILKELFGVAEVYLFGSYARGDATPDSDIDLLIILDEPE 44 (93)
T ss_dssp HHHHHHHHHHHHTTEEEEEEHHHHHTSSCTTSCEEEEEEESSTS
T ss_pred CHHHHHHHHHHCCCCEEEEECCcccCcCCCCCCEEEEEEeCCcc
Confidence 56788889999999999999999999999999999999987654
No 9
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins. This superfamily includes the NT domains of DNA polymerase beta and other family X DNA polymerases, as well as the NT domains of Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly (A) polymerases, terminal uridylyl transferases, and Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. The Escherichia coli CCA-adding enzyme belongs to this superfamily but is not included as this enzyme lacks the N-terminal helix conserved in the remainder of the superfamily. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate coordinate two divalent metal cations that are essential for catalysis. These divalent metal ions are
Probab=98.45 E-value=4.3e-07 Score=62.22 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEe
Q 046567 133 TAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIM 173 (246)
Q Consensus 133 ~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~ 173 (246)
++++.+++.+++..+..+++.|||++.|.+.+.||||+++.
T Consensus 2 ~~l~~i~~~l~~~~~~~~v~lfGS~arg~~~~~SDIDi~v~ 42 (49)
T cd05397 2 ELLDIIKERLKKLVPGYEIVVYGSLVRGLLKKSSDIDLACV 42 (49)
T ss_pred HHHHHHHHHHHhhcCCcEEEEECCcCCCCCCCCCCEEEEEE
Confidence 46788888888888889999999999999999999999986
No 10
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=98.33 E-value=7e-06 Score=78.80 Aligned_cols=63 Identities=22% Similarity=0.376 Sum_probs=49.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH----HHHHHHhhCCCceEEEecccccCCCCC-CCCceEEEecCCC
Q 046567 115 VDFCDFLSPTSDEREVRNTAVEA----VFDVIKYIWPKCKPEVFGSFRTGLYLP-TSDIDVVIMESGI 177 (246)
Q Consensus 115 ~~f~~~l~Pt~eE~~~R~~ii~~----l~~vv~~~~P~~~V~~FGS~~tGL~lp-~SDIDl~I~~~~~ 177 (246)
....+.++|+++|++..+.+.+. |+..+.+..+.++++.|||++.|.+++ +|||||+|..+..
T Consensus 3 ~~vl~~i~Ps~eE~~~~~~~~~~l~~~l~~~~~e~~~~~~v~~~GS~ArgT~L~G~sDIDIfi~f~~~ 70 (408)
T TIGR03671 3 EEVLERIKPTEEEREKLKKVADELIARLEEIIEELGVDAEVVLVGSYARGTWLKGDRDIDIFILFPKD 70 (408)
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeeEecCCccCCCCceeEEEEeCCC
Confidence 34567899999998766555554 445555556779999999999999999 9999999998643
No 11
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme. In vertebrates, 2-5OASs are induced by interferon during the innate immune response to protect against RNA virus infections. In the presence of an RNA activator, 2-5OASs catalyze the oligomerization of ATP into 2-5A. 2-5A activates endoribonuclease L, which leads to degradation of the viral RNA. 2-5OASs are also implicated in cell growth control, differentiation, and apoptosis. This family includes human OAS1, -2, -3, and OASL. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This class I group includes the archaeal Sulfolobus shibatae and Archeoglobus fulgidus CCA-adding enzymes. It belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more dis
Probab=98.33 E-value=9.5e-06 Score=65.89 Aligned_cols=78 Identities=29% Similarity=0.252 Sum_probs=55.6
Q ss_pred CCceEEEecccccCCCCC-CCCceEEEecCCC-----CChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCe
Q 046567 147 PKCKPEVFGSFRTGLYLP-TSDIDVVIMESGI-----HNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGV 220 (246)
Q Consensus 147 P~~~V~~FGS~~tGL~lp-~SDIDl~I~~~~~-----~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI 220 (246)
+...+++|||++.|.+++ .||||++|+.+.. ..+...+..|.+.|.+.... ...+ ..+-|.|++.-...++
T Consensus 26 ~~~~~~~~GS~a~~T~i~~~sDiD~~v~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~--~~~~~~v~v~~~~~~~ 102 (143)
T cd05400 26 RVAEVFLQGSYARGTALRGDSDIDLVVVLPDDTSFAEYGPAELLDELGEALKEYYGA-NEEV--KAQHRSVTVKFKGQGF 102 (143)
T ss_pred cccEEEEEcceeCCCCCCCCCceeEEEEEcCcccccccCHHHHHHHHHHHHHHhcCc-cccc--ccCceEEEEEEcCCCe
Confidence 358899999999999988 8999999987643 24567788888888875321 1222 3444566555444589
Q ss_pred EEEE--Eee
Q 046567 221 SFDI--RHF 227 (246)
Q Consensus 221 ~~DI--Sfn 227 (246)
++|| ++.
T Consensus 103 ~vDvvP~~~ 111 (143)
T cd05400 103 HVDVVPAFE 111 (143)
T ss_pred EEEEEEEee
Confidence 9999 554
No 12
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional
Probab=98.25 E-value=1.7e-05 Score=77.01 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=67.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhh---CC-CceEEEecccccCCCCC-CCCceEEEecCCCCChhHHHHH--
Q 046567 114 IVDFCDFLSPTSDEREVRNTAVEAVFDVIKYI---WP-KCKPEVFGSFRTGLYLP-TSDIDVVIMESGIHNPATGLQA-- 186 (246)
Q Consensus 114 I~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~---~P-~~~V~~FGS~~tGL~lp-~SDIDl~I~~~~~~~~~~~L~~-- 186 (246)
+....+.++|+.+|++.....++.|.+.|++. .+ +++++++||++.|++++ +|||||+|..+... +...|..
T Consensus 3 ~~evl~~i~Ps~eE~~~l~~~~~~l~~~L~~~~~~~~~~~~V~l~GS~ArgT~L~GdsDIDIFv~fp~~~-~~e~L~~~g 81 (447)
T PRK13300 3 LEEVLERIKPTEEEREKLKKVAEELIERLEEAIKELGLDAEVELVGSTARGTWLSGDRDIDIFVLFPKDT-SREELEEKG 81 (447)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeeecCCcccCCCCceeEEEEeCCCC-CHHHHHHHH
Confidence 34567889999999887776666666666543 22 49999999999999999 89999999986532 2323333
Q ss_pred --HHHHHHhC-CCcceEEEecCCCceeEEEEEcCCCeEEEE
Q 046567 187 --LSRALLQR-GIAKKIQVIAKARVPIVKFVEKKSGVSFDI 224 (246)
Q Consensus 187 --L~~~L~~~-~~~~~V~~I~~ARVPIIKf~d~~tgI~~DI 224 (246)
++..+.+. .--..++ .|.=|-|+..- .|+.+||
T Consensus 82 l~i~~~~~~~~~~~~~~~---yaeHpyv~~~~--~G~~VDi 117 (447)
T PRK13300 82 LEIGKEVAKELLGDYEER---YAEHPYVTGEI--DGFEVDI 117 (447)
T ss_pred HHHHHHHHHhhCCcceee---eccCceEEEEE--CCEEEEE
Confidence 23333221 1111222 35566666543 3666666
No 13
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=98.19 E-value=1.2e-05 Score=59.44 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhCC-CceEEEecccccCCCCCCCCceEEEecCCCCC
Q 046567 134 AVEAVFDVIKYIWP-KCKPEVFGSFRTGLYLPTSDIDVVIMESGIHN 179 (246)
Q Consensus 134 ii~~l~~vv~~~~P-~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~ 179 (246)
.++.+.+.+++.+. -..+++|||++.|-+.++|||||+|.......
T Consensus 3 ~~~~i~~~l~~~~~~i~~i~LfGS~arg~~~~~SDiDl~vi~~~~~~ 49 (93)
T cd05403 3 ILEEILEILRELLGGVEKVYLFGSYARGDARPDSDIDLLVIFDDPLD 49 (93)
T ss_pred hHHHHHHHHHHHhCCccEEEEEeeeecCCCCCCCCeeEEEEeCCCCC
Confidence 45667777777666 68899999999999999999999999876543
No 14
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.0007 Score=65.28 Aligned_cols=68 Identities=24% Similarity=0.346 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HHHhhCCCceEEEecccccCCCCC-CCCceEEEecCCC
Q 046567 110 LHKEIVDFCDFLSPTSDEREVRNTAVEAVFD----VIKYIWPKCKPEVFGSFRTGLYLP-TSDIDVVIMESGI 177 (246)
Q Consensus 110 L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~----vv~~~~P~~~V~~FGS~~tGL~lp-~SDIDl~I~~~~~ 177 (246)
+..-+....+.+.|+++|++.-+.+.+.|.. +++..-.++.+...||++-|+||+ +.|||+.|..+..
T Consensus 3 ~~~~l~evl~~i~P~~eE~~~~~~~~e~l~~~~~~~~~e~~~~aev~lVGS~AkgTwL~gd~DIDvFi~Fp~d 75 (443)
T COG1746 3 LEEVLEEVLKRIKPTEEERKKLKEVAEELRERINEIIEELGIDAEVVLVGSYAKGTWLRGDHDIDVFIAFPKD 75 (443)
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeecccCcccCCCcceeEEEECCCC
Confidence 3445667789999999998766665555554 454455689999999999999999 7999999998754
No 15
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=97.55 E-value=0.00053 Score=53.69 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecC
Q 046567 131 RNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAK 205 (246)
Q Consensus 131 R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ 205 (246)
.+.+++.+...+++.+.=+++.+|||++-|=..|+|||||.|....-.. -..+-.+...|..- +...|..+..
T Consensus 7 ~~~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~~~-ll~~~~l~~~L~~l-lg~~VDL~t~ 79 (97)
T COG1669 7 LKKILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPGKT-LLDLVRLEDELSDL-LGRKVDLVTK 79 (97)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCCcc-HHHHHHHHHHHHHH-hCCeeeeecc
Confidence 3445778888888877779999999999999999999999997643222 11233444445432 1234555533
No 16
>COG1708 Predicted nucleotidyltransferases [General function prediction only]
Probab=97.55 E-value=0.00042 Score=53.90 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecC
Q 046567 138 VFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMES 175 (246)
Q Consensus 138 l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~ 175 (246)
+....+.....+.+++|||++.|-+.+.||||++|...
T Consensus 16 ~~~~~~~~~~~~~v~LfGS~arG~~~~~SDiDv~vv~~ 53 (128)
T COG1708 16 LEAIEKKLGGDLLIYLFGSYARGDFVKESDIDLLVVSD 53 (128)
T ss_pred HHHHHHhcCCCeEEEEEccCcccccccCCCeeEEEEcC
Confidence 34444445567999999999999999999999999873
No 17
>PRK13746 aminoglycoside resistance protein; Provisional
Probab=97.24 E-value=0.0014 Score=59.82 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhCCCc--eEEEecccccCCCCCCCCceEEEecCCCCCh
Q 046567 135 VEAVFDVIKYIWPKC--KPEVFGSFRTGLYLPTSDIDVVIMESGIHNP 180 (246)
Q Consensus 135 i~~l~~vv~~~~P~~--~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~ 180 (246)
+..+.++++++.++. -|++|||.+.|-+.|.||||+.|+.....++
T Consensus 13 l~~~~~~l~~~l~~~l~~vyLfGS~~~G~~~p~SDIDllvvv~~~l~~ 60 (262)
T PRK13746 13 LSEACAVIERHLEPTLLAIHLYGSAVDGGLKPHSDIDLLVTVAVPLDE 60 (262)
T ss_pred HHHHHHHHHHhCcccEEEEEEECCcccCCCCCCCceeEEEEeCCCCCH
Confidence 344456677666543 6899999999999999999999988764443
No 18
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A ....
Probab=95.98 E-value=0.028 Score=44.68 Aligned_cols=67 Identities=25% Similarity=0.336 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCC----hhHHHHHHHHHHHhCCCcceE
Q 046567 133 TAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHN----PATGLQALSRALLQRGIAKKI 200 (246)
Q Consensus 133 ~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~----~~~~L~~L~~~L~~~~~~~~V 200 (246)
++.+.|.+.++++-|++++.+-|||.-|-.. .+|||+.|..+.... -...|..+...|.+.+++.+.
T Consensus 9 ~i~~~V~~~~~~i~p~~~v~i~GSyRRGK~~-~gDiDiLIt~~~~~~~~~~~~~~l~~lv~~L~~~g~i~~~ 79 (112)
T PF14792_consen 9 EIEEIVKEALEKIDPGLEVEICGSYRRGKET-SGDIDILITHPDPSSVSKKLEGLLEKLVKRLEEKGFITDD 79 (112)
T ss_dssp HHHHHHHHHHHCCSTT-EEEEEHHHHTT-SE-ESSEEEEEEETTCSTTTCSTTCHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCCc-CCCeEEEEeCCCcCcchhhHHHHHHHHHHHHHhCCeEEEe
Confidence 3455666778888899999999999999885 569999999886543 145788899999999887643
No 19
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=95.05 E-value=0.13 Score=45.82 Aligned_cols=42 Identities=26% Similarity=0.367 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhCCCceEEEecccc----cCC--CCCCCCceEEEecCCC
Q 046567 134 AVEAVFDVIKYIWPKCKPEVFGSFR----TGL--YLPTSDIDVVIMESGI 177 (246)
Q Consensus 134 ii~~l~~vv~~~~P~~~V~~FGS~~----tGL--~lp~SDIDl~I~~~~~ 177 (246)
.+..|..+.+.+ +..+.+|||+. ||+ -.++|||||.|-.+..
T Consensus 108 ~l~~l~~~~~~~--g~~~gv~GS~a~qlaTG~~~l~~~SDLDLLi~~~~~ 155 (221)
T PRK02098 108 TLRALLALAAAH--GVDCRVFGSLAWQALTGLPYLSASSDLDLLWPLPAA 155 (221)
T ss_pred HHHHHHHHHHhC--CCcEEEeeehHHHHhhCCcccCCCCCeeEEEecCCh
Confidence 344555555552 56899999999 999 6789999999987653
No 20
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific. Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.
Probab=94.95 E-value=0.075 Score=46.70 Aligned_cols=42 Identities=26% Similarity=0.361 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhCCCceEEEeccc----ccCC--CCCCCCceEEEecCCC
Q 046567 134 AVEAVFDVIKYIWPKCKPEVFGSF----RTGL--YLPTSDIDVVIMESGI 177 (246)
Q Consensus 134 ii~~l~~vv~~~~P~~~V~~FGS~----~tGL--~lp~SDIDl~I~~~~~ 177 (246)
.+..|..+...+ +....+|||+ +||+ -.++|||||.|..+..
T Consensus 96 ~l~~l~~~~~~~--~~~~gv~GS~~~qlaTg~~~~~~~SDLDLLi~~~~~ 143 (202)
T TIGR03135 96 ALRALDALLDAL--GVPWGVYGSAGWQLLTGLPYLHASSDLDLLLRAPSP 143 (202)
T ss_pred HHHHHHHHHHhC--CCcEEEecchHHHHhcCCcccCCCCCeeEEEcCCCh
Confidence 344555555542 5789999999 9999 6789999999988753
No 21
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases. X family polymerases fill in short gaps during DNA repair. They are relatively inaccurate enzymes and play roles in base excision repair, in non-homologous end joining (NHEJ) which acts mainly to repair damage due to ionizing radiation, and in V(D)J recombination. This family includes eukaryotic Pol beta, Pol lambda, Pol mu, and terminal deoxyribonucleotidyl transferase (TdT). Pol beta and Pol lambda are primarily DNA template-dependent polymerases. TdT is a DNA template-independent polymerase. Pol mu has both template dependent and template independent activities. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These three carboxylate residues are fairly well conserved in this
Probab=92.94 E-value=2 Score=39.85 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEE
Q 046567 133 TAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVK 212 (246)
Q Consensus 133 ~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIK 212 (246)
.+.+.|...++.+-|.++|.+-||+.-|.. -.+|||++|..+...+ ...+..+...|.+.+.+..+. .....-..
T Consensus 145 ~~a~~i~~~l~~~~~~~~v~i~GS~RRg~e-t~gDiDilv~~~~~~~-~~~~~~v~~~l~~~~~~~~~~---~~g~~k~~ 219 (307)
T cd00141 145 AIAEIIKEALREVDPVLQVEIAGSYRRGKE-TVGDIDILVTHPDATS-RGLLEKVVDALVELGFVTEVL---SKGDTKAS 219 (307)
T ss_pred HHHHHHHHHHHhCCCceEEEEcccccCCCC-ccCCEEEEEecCCccc-cccHHHHHHHHHhCCCeehhh---hCCCceEE
Confidence 344556666666668899999999999987 4789999998876433 334566777777776643211 11111222
Q ss_pred EEE----cCCCeEEEEEeec
Q 046567 213 FVE----KKSGVSFDIRHFM 228 (246)
Q Consensus 213 f~d----~~tgI~~DISfnn 228 (246)
+.. ...++.|||-+-.
T Consensus 220 ~~~~~~~~~~~~rVDl~~~p 239 (307)
T cd00141 220 GILKLPGGWKGRRVDLRVVP 239 (307)
T ss_pred EEEecCCCCCceEEEEEEeC
Confidence 221 2358999998875
No 22
>PF10620 MdcG: Phosphoribosyl-dephospho-CoA transferase MdcG; InterPro: IPR017557 Malonate decarboxylase, like citrate lyase, has a unique acyl carrier protein subunit with a prosthetic group derived from, and distinct from, coenzyme A. Members of this protein family are the phosphoribosyl-dephospho-CoA transferase specific to the malonate decarboxylase system. This enzyme can also be designated holo-ACP synthase (2.7.7.61 from EC). The corresponding component of the citrate lyase system, CitX, shows little or no sequence similarity to this family.; GO: 0016779 nucleotidyltransferase activity
Probab=92.17 E-value=0.76 Score=40.59 Aligned_cols=45 Identities=27% Similarity=0.351 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhCCCceEEEeccc----ccCCC--CCCCCceEEEecCCCC
Q 046567 132 NTAVEAVFDVIKYIWPKCKPEVFGSF----RTGLY--LPTSDIDVVIMESGIH 178 (246)
Q Consensus 132 ~~ii~~l~~vv~~~~P~~~V~~FGS~----~tGL~--lp~SDIDl~I~~~~~~ 178 (246)
...+..+...... -+....+|||. +||+- .++|||||.+..+...
T Consensus 102 ~~~l~~l~~~~~~--~~~~~gv~GS~g~qlaTGl~~l~~~SDLDLli~~~~~~ 152 (213)
T PF10620_consen 102 QPALQALRALLDA--LGLRWGVYGSLGFQLATGLPYLHADSDLDLLIRPPSPS 152 (213)
T ss_pred HHHHHHHHHHHHH--cCCCEEEehhHHHHHHhCccccCCCCCceEEEeCCChh
Confidence 3445555555533 38899999998 56765 4689999999887654
No 23
>KOG3793 consensus Transcription factor NFAT, subunit NF45 [Transcription]
Probab=90.48 E-value=1.6 Score=40.43 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhC-CC------ceEEEecccccCCCCCCCCc-eEEEecCCC
Q 046567 106 PMLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIW-PK------CKPEVFGSFRTGLYLPTSDI-DVVIMESGI 177 (246)
Q Consensus 106 ~~~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~-P~------~~V~~FGS~~tGL~lp~SDI-Dl~I~~~~~ 177 (246)
+-..++++|.+--+.+.|+.+|+..-..++..+..++.+.. |+ ..|.-.|||.+|..+-++|. |+||...-.
T Consensus 37 ~D~~f~~alLkRnqdL~P~~~~q~~I~~~vtKV~~vLdn~~~~~L~~~~ieevrqVGSF~k~T~~tg~~~advVViLkTL 116 (362)
T KOG3793|consen 37 PDTSFSEALLKRNQDLAPNSAEQASILSLVTKVNNVLDNLVAPGLFEVQIEEVRQVGSFKKGTMTTGHNVADLVVILKTL 116 (362)
T ss_pred cchHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHhhccCCceEeehhhhhhccceeccccccCCcccceEEEeecC
Confidence 35679999999999999999999999999999999887753 33 23556799999999887665 777776554
Q ss_pred C
Q 046567 178 H 178 (246)
Q Consensus 178 ~ 178 (246)
+
T Consensus 117 P 117 (362)
T KOG3793|consen 117 P 117 (362)
T ss_pred C
Confidence 4
No 24
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=89.48 E-value=3.6 Score=34.83 Aligned_cols=75 Identities=23% Similarity=0.241 Sum_probs=48.7
Q ss_pred ceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcc-eEEEecCCCceeEEEEEcCCCeEEEEEee
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAK-KIQVIAKARVPIVKFVEKKSGVSFDIRHF 227 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~-~V~~I~~ARVPIIKf~d~~tgI~~DISfn 227 (246)
....+-|...-|+.+++|||||++..++ +......+.+...+..-++ .-..| ...|.+++.-...|..+-|-..
T Consensus 16 ~~PiL~GTiPi~Idi~~SDLDIic~~~d---~~~F~~~l~~~f~~~~~f~~~~~~i--~~~~~~~~~F~~~~~~~EiF~Q 90 (152)
T PF14091_consen 16 YDPILVGTIPIGIDIPGSDLDIICEVPD---PEAFEQLLQSLFGQFEGFTIKEKTI--RGEPSIVANFRYEGFPFEIFGQ 90 (152)
T ss_pred CCCEEecccccccCCCCCCccEEEEeCC---HHHHHHHHHHHhccCCCceeeecee--CCceeEEEEEEECCceEEEeec
Confidence 3567789999999999999999998864 3444455555554432221 11223 3445555555668888888775
Q ss_pred c
Q 046567 228 M 228 (246)
Q Consensus 228 n 228 (246)
+
T Consensus 91 ~ 91 (152)
T PF14091_consen 91 P 91 (152)
T ss_pred C
Confidence 4
No 25
>PRK05007 PII uridylyl-transferase; Provisional
Probab=89.33 E-value=3.5 Score=43.70 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=26.3
Q ss_pred CceEEEecccccCCCCCCCCceEEEecCCC
Q 046567 148 KCKPEVFGSFRTGLYLPTSDIDVVIMESGI 177 (246)
Q Consensus 148 ~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~ 177 (246)
+..+...|++.-|--.|.|||||+++.++.
T Consensus 80 ~~alvAvGgyGR~EL~p~SDiDll~l~~~~ 109 (884)
T PRK05007 80 DLALVAVGGYGRGELHPLSDIDLLILSRKK 109 (884)
T ss_pred ceEEEecCCCCCcccCCcccceEEEEeCCC
Confidence 457889999999999999999999998743
No 26
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins. Escherichia coli GlnD and -E participate in the Glutamine synthetase (GS)/Glutamate synthase (GOGAT) pathway for the assimilation of ammonium nitrogen. In nitrogen sufficiency, GlnE adenylates GS, reducing GS activity; when nitrogen is limiting, GlnE deadenylates GS-AMP, restoring GS activity. When nitrogen is limiting, GlnD uridylylates the nitrogen regulatory protein PII to PII-UTP, and in nitrogen sufficiency, it removes the modifying groups. The activity of Escherichia coli GlnE is modulated by PII-proteins. PII-UMP promotes GlnE deadenylation activity, and PII promotes GlnE adenylation activity. Escherichia coli GlnE has two separate NT domains. The N-terminal NT domain catalyzes the deadenylylation of GS, and the C-terminal NT domain the adenylylation reaction. The majority of proteins in this family conta
Probab=89.28 E-value=2.4 Score=35.30 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.8
Q ss_pred CceEEEecccccCCCCCCCCceEEEecCC
Q 046567 148 KCKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 148 ~~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
+..+..+||+..+--.+.||+|+.++...
T Consensus 55 ~~~~la~Gs~GR~E~~~~SD~D~~~v~~~ 83 (172)
T cd05401 55 PFALLALGSYGRGELNPSSDQDLLLLYDD 83 (172)
T ss_pred cEEEEEeCCcccCCcCCCcCcceEEEeCC
Confidence 46789999999999999999999988764
No 27
>PRK01293 phosphoribosyl-dephospho-CoA transferase; Provisional
Probab=88.56 E-value=2.3 Score=37.60 Aligned_cols=67 Identities=22% Similarity=0.196 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEecccc----cCCC--CCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEE
Q 046567 133 TAVEAVFDVIKYIWPKCKPEVFGSFR----TGLY--LPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQV 202 (246)
Q Consensus 133 ~ii~~l~~vv~~~~P~~~V~~FGS~~----tGL~--lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~ 202 (246)
..+..+..+...+ +...-+|||.. ||+- .++|||||+|..+.... ...+..+.+.|....+--++++
T Consensus 96 ~al~~l~~~~~~~--~~~wgv~GS~g~qlaTGl~~l~~~SDLDLlir~~~~l~-~~~~~~ll~~l~~~p~RvD~ql 168 (207)
T PRK01293 96 PALQALAALLDAL--GLAWGVTGSAGFELATGIPVLHADSDLDLLIRAPQPLA-RDQARELLQLLDQAPCRVDLQL 168 (207)
T ss_pred HHHHHHHHHHHhC--CCceeeehhHHHHHhhCCccccCCCCccEeecCCCccc-HHHHHHHHHHHhcCCCeeEEEE
Confidence 3445555555553 78899999984 6765 45799999998765332 3445555565654333224444
No 28
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=87.86 E-value=2.9 Score=39.50 Aligned_cols=63 Identities=29% Similarity=0.336 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCC-hhHHHHHHHHHHHhCCC
Q 046567 133 TAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHN-PATGLQALSRALLQRGI 196 (246)
Q Consensus 133 ~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~-~~~~L~~L~~~L~~~~~ 196 (246)
++.+.|++.++...|++.|.+=|||.-|-. ...|||+.|..|...+ ....+..|...|.+.++
T Consensus 156 ~i~~~V~~av~~~~p~~~vt~~GsfRRGk~-~ggDvD~LithP~~~s~~~~~~~~l~~~le~~g~ 219 (353)
T KOG2534|consen 156 AIQQTVQEAVWAFDPEAFVTVTGSFRRGKK-MGGDVDFLITHPGSTSTEAKLLQLLMILLEKKGL 219 (353)
T ss_pred HHHHHHHHHHhhcCCCcEEEEeccccCCcc-cCCCeeEEEeCCCCCchhhhHHHHHHHHHHhcCe
Confidence 344555666777789999999999999976 6899999999987643 33455666666666554
No 29
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=85.56 E-value=4 Score=42.25 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhh-CC-CceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHh
Q 046567 128 REVRNTAVEAVFDVIKYI-WP-KCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQ 193 (246)
Q Consensus 128 ~~~R~~ii~~l~~vv~~~-~P-~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~ 193 (246)
-+.|+.+.+.-..+++.+ +| ++.+...|+|.-|--.|.|||||+++.++..+ +..+..+-..|-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~aLvAvGGYGR~EL~P~SDIDLLiL~~~~~~-~~~i~~~~~~LWD 71 (693)
T PRK00227 5 AQLREDAEASALALLGSLQLPPGTALAATGSLARREMTPYSDLDLILLHPPGAT-PDGVEDLWYPIWD 71 (693)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeccccccCcCCCcCceEEEEeCCccc-HHHHHHHHHHHHh
Confidence 456778888888888875 33 46889999999999999999999999864222 3344444444433
No 30
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO). This domain, normally represents the C-terminal region, is uncharacterised; however, it seems to be similar to the nucleotidyltransferase domain (IPR002934 from INTERPRO), conserving the DXD motif, which strongly suggests that proteins containing this domain are also nucleotidyltransferases.; GO: 0008773 [protein-PII] uridylyltransferase activity
Probab=84.41 E-value=7.5 Score=31.74 Aligned_cols=49 Identities=20% Similarity=0.103 Sum_probs=34.4
Q ss_pred CceEEEecccccCCCCCCCCceEEEecCCCCC--hhHHHHH----HHHHHHhCCC
Q 046567 148 KCKPEVFGSFRTGLYLPTSDIDVVIMESGIHN--PATGLQA----LSRALLQRGI 196 (246)
Q Consensus 148 ~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~--~~~~L~~----L~~~L~~~~~ 196 (246)
...+..+||..-+=-++.||+|..|+..+... ....+.. +...|...|+
T Consensus 49 ~~a~lalGS~GR~E~~~~sDqD~alv~~d~~~~~~~~~f~~~a~~~~~~L~~~G~ 103 (138)
T PF03445_consen 49 PFAWLALGSYGRREQTLYSDQDNALVFEDEESEEDRAYFEAFAERLVDALDECGF 103 (138)
T ss_pred CEEEEEECcccccCCCcCccccceeeecCccchhHHHHHHHHHHHHHHHHHHcCC
Confidence 46788999999999999999999998776221 2334444 4445555554
No 31
>PF10127 Nuc-transf: Predicted nucleotidyltransferase; InterPro: IPR018775 Proteins in this entry are predicted to catalyse the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.
Probab=82.76 E-value=1.2 Score=39.57 Aligned_cols=43 Identities=30% Similarity=0.159 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhCCC-ceEEEecccccCCCCCCCCceEEEe
Q 046567 131 RNTAVEAVFDVIKYIWPK-CKPEVFGSFRTGLYLPTSDIDVVIM 173 (246)
Q Consensus 131 R~~ii~~l~~vv~~~~P~-~~V~~FGS~~tGL~lp~SDIDl~I~ 173 (246)
+..+.+.++++-++.--+ .-....||.+-||..|+||.|+..+
T Consensus 2 ~~~i~~~l~~ie~~~~~~il~~~~sGS~a~G~~s~dSD~D~r~v 45 (247)
T PF10127_consen 2 RETIQEKLNEIEKEHNVKILYACESGSRAYGFASPDSDYDVRGV 45 (247)
T ss_pred chHHHHHHHHHHHhcCCcEEEEecccccccCCCCCCcCcccchh
Confidence 456677777777764222 3355779999999999999998654
No 32
>smart00483 POLXc DNA polymerase X family. includes vertebrate polymerase beta and terminal deoxynucleotidyltransferases
Probab=81.56 E-value=20 Score=33.57 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCC
Q 046567 132 NTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIH 178 (246)
Q Consensus 132 ~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~ 178 (246)
..+.+.|...++.+.|.++|.+-||+.-|.- -..|||++|..+...
T Consensus 148 ~~i~~~i~~~l~~~~~~~~v~i~GSyRRgke-t~gDIDili~~~~~~ 193 (334)
T smart00483 148 FAVEYIVKRAVRKILPDAIVTLTGSFRRGKE-TGHDVDFLITSPHPA 193 (334)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEecccccCCC-cCCCeeEEEecCCcc
Confidence 4555667777778889999999999999987 478999999877643
No 33
>COG2413 Predicted nucleotidyltransferase [General function prediction only]
Probab=81.54 E-value=3.1 Score=37.00 Aligned_cols=44 Identities=34% Similarity=0.428 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEec
Q 046567 128 REVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIME 174 (246)
Q Consensus 128 ~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~ 174 (246)
+.+|+++.+.++.+.+-. ..-+.+||.+-|=-.|+||+|+.|..
T Consensus 20 rekRe~A~~i~e~l~~f~---ie~~v~gSvarGDV~p~SDvDV~I~~ 63 (228)
T COG2413 20 REKREKARKIMEGLSDFG---IEAVVYGSVARGDVRPGSDVDVAIPE 63 (228)
T ss_pred HHHHHHHHHHHHHHHHhc---chhEEEeeeeccCcCCCCCceEEEec
Confidence 357777877777777652 35678999999988999999999976
No 34
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=77.73 E-value=14 Score=39.01 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=25.6
Q ss_pred ceEEEecccccCCCCCCCCceEEEecCCC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMESGI 177 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~~~ 177 (246)
+.+...|+|.-|---|.|||||.++.++.
T Consensus 57 iaLvAvGGYGR~eL~P~SDIDlliL~~~~ 85 (854)
T PRK01759 57 LALIAVGGYGRREMFPLSDLDILILTEQP 85 (854)
T ss_pred eEEEEeCCcccccCCCcccceEEEEeCCC
Confidence 47888899999999999999999998743
No 35
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=73.08 E-value=17 Score=38.24 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=26.8
Q ss_pred CCceEEEecccccCCCCCCCCceEEEecCCC
Q 046567 147 PKCKPEVFGSFRTGLYLPTSDIDVVIMESGI 177 (246)
Q Consensus 147 P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~ 177 (246)
.+..+...||+.-|=-.|.||||++++..+.
T Consensus 42 ~~~aliA~GgyGR~El~p~SDiDll~l~~~~ 72 (850)
T TIGR01693 42 SGIALVAVGGYGRGELAPYSDIDLLFLHDGK 72 (850)
T ss_pred CCeEEEEeCCccccCcCCCCCCeEEEEeCCC
Confidence 3567899999999999999999999987643
No 36
>PRK04374 PII uridylyl-transferase; Provisional
Probab=71.27 E-value=36 Score=36.17 Aligned_cols=28 Identities=21% Similarity=0.519 Sum_probs=25.1
Q ss_pred ceEEEecccccCCCCCCCCceEEEecCC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
..|...|++.-|--.|.|||||+++.++
T Consensus 73 ~alvAvGgYGR~EL~p~SDIDLliL~~~ 100 (869)
T PRK04374 73 LSLHAVGGYGRGELFPRSDVDLLVLGET 100 (869)
T ss_pred EEEEEcCCccccccCCcccceEEEEecC
Confidence 4788899999999999999999998764
No 37
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.69 E-value=46 Score=35.37 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=28.0
Q ss_pred ceEEEecccccCCCCCCCCceEEEecCCCCCh
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMESGIHNP 180 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~ 180 (246)
+.+...|.+.-|--.|.||||+.++.+...++
T Consensus 67 ~aLvAVGGyGRgEL~P~SDiDlL~L~p~~~~~ 98 (867)
T COG2844 67 LALVAVGGYGRGELHPLSDIDLLLLSPQKLTD 98 (867)
T ss_pred eEEEEeccccccccCCCccceEEEecCCCCCh
Confidence 77899999999999999999999998865443
No 38
>PRK03381 PII uridylyl-transferase; Provisional
Probab=67.90 E-value=15 Score=38.47 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=25.1
Q ss_pred ceEEEecccccCCCCCCCCceEEEecCC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
..+...|++..|--.|.|||||.++..+
T Consensus 58 ~alvAvg~~gr~el~p~SD~Dll~l~~~ 85 (774)
T PRK03381 58 VALVAVGGLGRRELLPYSDLDLVLLHDG 85 (774)
T ss_pred eEEEEeCCcCCcCcCCCCCCeEEEEeCC
Confidence 5788889999999999999999998764
No 39
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. The crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolutio has been determined []. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta-sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different.; GO: 0004652 polynucleotide adenylyltransferase activity, 0006351 transcription, DNA-dependent; PDB: 1Q79_A 1Q78_A 1F5A_A 2O1P_A 2HHP_A 3C66_B 1FA0_A 2Q66_A.
Probab=65.02 E-value=16 Score=33.17 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHHHhhC
Q 046567 106 PMLQLHKEIVDFCDFL--SPTSDEREVRNTAVEAVFDVIKYIW 146 (246)
Q Consensus 106 ~~~~L~~EI~~f~~~l--~Pt~eE~~~R~~ii~~l~~vv~~~~ 146 (246)
.-...+.+|.+|++.. -|+++|...|+.+++.|+++++++.
T Consensus 18 ~Dl~~s~~L~~~l~~~~~~es~ee~~~R~~vl~~L~~iv~~wv 60 (254)
T PF04928_consen 18 KDLKRSASLEEFLKDYGLFESEEEEQKREEVLRKLQQIVKEWV 60 (254)
T ss_dssp HHHHHHHHHHHHHHHCT-S--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHcCCCCChHHHhHHHHHHHHHHHHHHHHH
Confidence 4567888899998766 6899999999999999999999853
No 40
>PHA02603 nrdC.11 hypothetical protein; Provisional
Probab=64.68 E-value=3.7 Score=38.84 Aligned_cols=21 Identities=38% Similarity=0.532 Sum_probs=18.9
Q ss_pred EEEecccccCCCCCCCCceEE
Q 046567 151 PEVFGSFRTGLYLPTSDIDVV 171 (246)
Q Consensus 151 V~~FGS~~tGL~lp~SDIDl~ 171 (246)
...+||.+-|+..|+||+|+-
T Consensus 6 ~~~~GShaYG~~tp~SD~D~r 26 (330)
T PHA02603 6 KGLFGSHLYGTSTPESDVDYK 26 (330)
T ss_pred EEecccceeCCCCCCcccccc
Confidence 467899999999999999964
No 41
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=64.35 E-value=22 Score=27.94 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhCCCceEEEecccccCCCC---CCCCceEEEecCCCCChhHHHHHHHHHHHh
Q 046567 135 VEAVFDVIKYIWPKCKPEVFGSFRTGLYL---PTSDIDVVIMESGIHNPATGLQALSRALLQ 193 (246)
Q Consensus 135 i~~l~~vv~~~~P~~~V~~FGS~~tGL~l---p~SDIDl~I~~~~~~~~~~~L~~L~~~L~~ 193 (246)
+..+-+.+|+.+|++.|..-|..++...- -...+|.++.+.+. ..+..|.+.+.+
T Consensus 55 ~~~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE----~~~~~l~~~l~~ 112 (127)
T cd02068 55 ALELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGE----ETFLKLLEELEE 112 (127)
T ss_pred HHHHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcH----HHHHHHHHHHHc
Confidence 45555678888999999999999886543 36789999987552 346677777754
No 42
>PF09970 DUF2204: Nucleotidyl transferase of unknown function (DUF2204); InterPro: IPR018700 This family of hypothetical prokaryotic proteins has no known function.
Probab=63.15 E-value=82 Score=26.92 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhCCCceEEEeccccc----CCCCCCCCceEEEecCC
Q 046567 134 AVEAVFDVIKYIWPKCKPEVFGSFRT----GLYLPTSDIDVVIMESG 176 (246)
Q Consensus 134 ii~~l~~vv~~~~P~~~V~~FGS~~t----GL~lp~SDIDl~I~~~~ 176 (246)
.+..+-+.+++. +.++.+.|+++. |..-.+.|||+.+..+.
T Consensus 4 ~l~~~~~~L~~~--gv~~~ivGG~av~l~~g~~r~T~DIDlfi~~~~ 48 (181)
T PF09970_consen 4 ALKEILEELNKR--GVEYVIVGGAAVNLAYGRRRTTKDIDLFIENPS 48 (181)
T ss_pred HHHHHHHHHHHc--CCeEEEECHHHHHHHhCCCCCCCCeEEEeCCCc
Confidence 344555555553 568999999975 55566899999997653
No 43
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=62.63 E-value=68 Score=34.25 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.4
Q ss_pred ceEEEecccccCCCCCCCCceEEEecCCC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMESGI 177 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~~~ 177 (246)
..|...|.+.-|--.|.|||||+++.++.
T Consensus 79 ~alvAvGgyGR~EL~p~SDiDll~l~~~~ 107 (895)
T PRK00275 79 IALVAVGGYGRGELHPYSDIDLLILLDSA 107 (895)
T ss_pred EEEEEcCCccccCcCCCCCceEEEEecCC
Confidence 57888899999999999999999987643
No 44
>COG1665 Predicted nucleotidyltransferase [General function prediction only]
Probab=61.14 E-value=10 Score=35.23 Aligned_cols=30 Identities=40% Similarity=0.464 Sum_probs=26.3
Q ss_pred CCCceEEEecccccCCCCCCCCceEEEecC
Q 046567 146 WPKCKPEVFGSFRTGLYLPTSDIDVVIMES 175 (246)
Q Consensus 146 ~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~ 175 (246)
.|--+.-+=||..-||+-.+||||++|.+.
T Consensus 119 Vp~~~mGVTGSiL~gl~~~nSDIDfVVYG~ 148 (315)
T COG1665 119 VPVNSMGVTGSILLGLYDENSDIDFVVYGQ 148 (315)
T ss_pred CchhhccccccccccccCCCCCceEEEEcH
Confidence 466667788999999999999999999994
No 45
>PRK03059 PII uridylyl-transferase; Provisional
Probab=60.97 E-value=24 Score=37.36 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=25.3
Q ss_pred CceEEEecccccCCCCCCCCceEEEecCC
Q 046567 148 KCKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 148 ~~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
+..+...|++..|--.|.|||||+++.++
T Consensus 61 ~~alvAvGgyGR~EL~p~SDiDll~l~~~ 89 (856)
T PRK03059 61 GAALVAVGGYGRGELFPYSDVDLLVLLPD 89 (856)
T ss_pred CeEEEEcCCCCCcccCCCCCCEEEEEecC
Confidence 35788889999999999999999998753
No 46
>PF03296 Pox_polyA_pol: Poxvirus poly(A) polymerase nucleotidyltransferase domain; InterPro: IPR024231 Poly(A) polymerase (2.7.7.19 from EC) catalyses template-independent extension of the 3'-end of a DNA or RNA strand by one nucleotide at a time. The Poxvirus enzyme creates the 3'(poly)A tail of mRNAs, and is a heterodimer of a catalytic and a regulatory subunit. This entry represents the nucleotidyltransferase domain of the catalytic subunit [].; PDB: 3ERC_C 3ER8_D 3OWG_A 2GA9_D 2GAF_D 3ER9_B.
Probab=59.03 E-value=31 Score=28.98 Aligned_cols=108 Identities=16% Similarity=0.253 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHH-------HHHHHHHHHHHHhhCCCceEEEecccccCCCCC---CCCceEEEecC
Q 046567 106 PMLQLHKEIVDFCDFLSPTSDEREVR-------NTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLP---TSDIDVVIMES 175 (246)
Q Consensus 106 ~~~~L~~EI~~f~~~l~Pt~eE~~~R-------~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp---~SDIDl~I~~~ 175 (246)
.+..+.+++..-+.-..|+.+- ..| ..+-+.++..+++. +-.+.+|||+..-+--| ..|||+.=..
T Consensus 4 ~~~~ia~~~l~s~~v~~~~~~~-~grh~vS~lV~~V~klmeEyLrrh--Nk~CicYGSyslhllN~~I~YgDIDilqTN- 79 (149)
T PF03296_consen 4 SMEKIASDYLNSYNVANPSGKV-MGRHNVSDLVENVNKLMEEYLRRH--NKSCICYGSYSLHLLNPNIKYGDIDILQTN- 79 (149)
T ss_dssp GGHHHHHHHHHHH--S--------------THHHHHHHHHHHHHHH---TTTEEEESHHHHHTTSTTS--SS-EEEEST-
T ss_pred HHHHHHHHHHHHhcccccCccc-cccccCcHHHHHHHHHHHHHHHhh--CCCeEEeeeeeEEecCCCcccCcchhhhcc-
Confidence 4677888888888777777643 333 33445556666663 45578999998877655 4999987533
Q ss_pred CCCChhHHHHHHHHHHHh-CCCcceEEEecCCCceeE----EEEEcCCCeEEEEEee
Q 046567 176 GIHNPATGLQALSRALLQ-RGIAKKIQVIAKARVPIV----KFVEKKSGVSFDIRHF 227 (246)
Q Consensus 176 ~~~~~~~~L~~L~~~L~~-~~~~~~V~~I~~ARVPII----Kf~d~~tgI~~DISfn 227 (246)
...+|-.++-.++- .| .++... |||-+ -++|...+.-+| ||+
T Consensus 80 ----ar~flI~laflI~fitG--~~~~L~---kvPyLknyivlkd~~~~hIiD-sfn 126 (149)
T PF03296_consen 80 ----ARTFLINLAFLIKFITG--RDVVLL---KVPYLKNYIVLKDEEDNHIID-SFN 126 (149)
T ss_dssp ----HHHHHHHHHHHHHHHCS--S-EEEE---EETTSTTEEEEEETTS-EEEE-EEE
T ss_pred ----cHHHHHHHHHHHhhhcC--cceEEE---EchhhhceEEEEecCCCEEEE-eec
Confidence 33445455554432 22 233333 56654 344554555455 444
No 47
>COG3541 Predicted nucleotidyltransferase [General function prediction only]
Probab=54.23 E-value=6.5 Score=35.77 Aligned_cols=19 Identities=42% Similarity=0.440 Sum_probs=17.2
Q ss_pred cccccCCCCCCCCceEEEe
Q 046567 155 GSFRTGLYLPTSDIDVVIM 173 (246)
Q Consensus 155 GS~~tGL~lp~SDIDl~I~ 173 (246)
||.+-|+..|+||+|+--+
T Consensus 17 GS~~yGf~spdSDyDvR~V 35 (248)
T COG3541 17 GSHLYGFPSPDSDYDVRGV 35 (248)
T ss_pred cccccCCCCCCCccceeeE
Confidence 9999999999999998644
No 48
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=53.55 E-value=34 Score=30.28 Aligned_cols=28 Identities=18% Similarity=0.094 Sum_probs=23.8
Q ss_pred ceEEEecccccCCCCCCCCceEEEecCC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
.-|+..||..+=--.+.||+|+=|+...
T Consensus 98 ~GlY~MGS~gSi~Qs~~SDlDiWvCh~~ 125 (204)
T PF12633_consen 98 LGLYSMGSTGSIGQSSSSDLDIWVCHDS 125 (204)
T ss_pred EEEEecCCCccccCCCCCCCeEEEEcCC
Confidence 4588999999988899999999887653
No 49
>COG1796 POL4 DNA polymerase IV (family X) [DNA replication, recombination, and repair]
Probab=52.61 E-value=1.5e+02 Score=28.22 Aligned_cols=85 Identities=20% Similarity=0.316 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEE
Q 046567 134 AVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKF 213 (246)
Q Consensus 134 ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf 213 (246)
+...|...+.++-+-.++..-||..-|.. -.+|||+++..... .. +..+|.+...+..+..-...+|-.+.-
T Consensus 166 ia~ei~~yl~~~~~~~~~~~aGs~RR~re-tv~DiD~~~s~~~~---~~----v~~~~~~~~~~~~vi~~G~~k~s~~~~ 237 (326)
T COG1796 166 IAQEIEGYLEELTPIIQASIAGSLRRGRE-TVGDIDILISTSHP---ES----VLEELLEMPNVQEVIAKGETKVSMLLI 237 (326)
T ss_pred HHHHHHHHHHhccchheeeeccchhhccc-cccceeeEeccCCc---HH----HHHHHhcCCCcceeeecCCceeeEEEE
Confidence 34455555555545467788899999887 47999999987542 22 334444433345555556667766555
Q ss_pred EEcCCCeEEEEEeec
Q 046567 214 VEKKSGVSFDIRHFM 228 (246)
Q Consensus 214 ~d~~tgI~~DISfnn 228 (246)
. ..|+.||+-+-.
T Consensus 238 ~--~~~~svD~r~v~ 250 (326)
T COG1796 238 L--DEGTSVDFRVVP 250 (326)
T ss_pred e--cCCCeeEEEEcC
Confidence 4 478889997764
No 50
>PF03710 GlnE: Glutamate-ammonia ligase adenylyltransferase; InterPro: IPR005190 This is a conserved repeated domain found in GlnE proteins. These proteins adenylate and deadenylate glutamine synthases: ATP + {L-Glutamate:ammonia ligase (ADP-forming)} = Diphosphate + Adenylyl-{L-Glutamate:Ammonia ligase (ADP-forming)}. The domain is related to the nucleotidyltransferase domain IPR002934 from INTERPRO.; GO: 0008882 [glutamate-ammonia-ligase] adenylyltransferase activity; PDB: 1V4A_A 3K7D_A.
Probab=49.05 E-value=61 Score=28.94 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=22.4
Q ss_pred ceEEEecccccCCCCCCCCceEEEecCCCCC-------hhHHHHHHHHHHH
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMESGIHN-------PATGLQALSRALL 192 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~-------~~~~L~~L~~~L~ 192 (246)
..|.-.|-...+=-...|||||+++.+.... .+....++++.|.
T Consensus 128 ~~ViamGKlGg~ELny~SDiDLifvy~~~~~~~~~~~~~~~~~~rl~~~~~ 178 (247)
T PF03710_consen 128 FAVIAMGKLGGRELNYSSDIDLIFVYDPDGETGRRSISNQEFFTRLAQRLI 178 (247)
T ss_dssp EEEEE-HHHHTT---TT--EEEEEEE---TT-SSS-SBHHHHHHHHHHHHH
T ss_pred eEEEEeccccccccCCccCCceEEEeccccccccChhhHHHHHHHHHHHHH
Confidence 4566777777777778999999987653221 2345555555443
No 51
>PRK05092 PII uridylyl-transferase; Provisional
Probab=48.43 E-value=1.2e+02 Score=32.56 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=25.0
Q ss_pred ceEEEecccccCCCCCCCCceEEEecCC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
..|...|.+..|=-.|.|||||+++.+.
T Consensus 106 ~alvA~GgyGr~EL~p~SDiDLl~l~~~ 133 (931)
T PRK05092 106 LAVLAVGGYGRGELAPGSDIDLLFLLPY 133 (931)
T ss_pred eEEEEecCcCCcccCCCCCceEEEEeCC
Confidence 5688899999999999999999998764
No 52
>PHA02996 poly(A) polymerase large subunit; Provisional
Probab=45.17 E-value=44 Score=32.73 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHHHHhCCCHHH--H----HHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCC---CCCceEEEec
Q 046567 105 SPMLQLHKEIVDFCDFLSPTSDE--R----EVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLP---TSDIDVVIME 174 (246)
Q Consensus 105 ~~~~~L~~EI~~f~~~l~Pt~eE--~----~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp---~SDIDl~I~~ 174 (246)
+.+..|..++++-+.-..|++.- + ..-..+-+.++..+++. +-.+.+|||+..-+--| ..|||++=..
T Consensus 120 ~sm~~la~~~L~synv~~~~~kvmgrh~VSdLV~~V~klmeEyLrrh--Nk~CicYGSySlhllNp~I~YgDIDilqTN 196 (467)
T PHA02996 120 SSMEKLARDALNSYNVAVISEKVMGRHNVSDLVGNVNKLMEEYLRRH--NKSCICYGSYSLHLLNPEIEYGDIDILQTN 196 (467)
T ss_pred HHHHHHHHHHHHhccccCCCccccccccccHHHHHHHHHHHHHHHhc--CCceEEeeceeeeecCCccccCCcceeeec
Confidence 46888999999988777777521 1 12334445555666653 45578999999877655 4999987543
No 53
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=44.80 E-value=1.8e+02 Score=26.81 Aligned_cols=97 Identities=22% Similarity=0.282 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEe--cCCCCChhHHHHHHHHHHH---hCCCc
Q 046567 123 PTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIM--ESGIHNPATGLQALSRALL---QRGIA 197 (246)
Q Consensus 123 Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~--~~~~~~~~~~L~~L~~~L~---~~~~~ 197 (246)
|....+..|..++..++..+..- .+...|||+.++ +|++..|......+++.|. ++.++
T Consensus 42 P~~TA~HHr~~il~Lv~~al~ea----------------~v~~~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv 105 (336)
T KOG2708|consen 42 PRDTARHHRAWILGLVKQALEEA----------------GVTSDDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLV 105 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHc----------------CCChhhCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcc
Confidence 66677888899999988888762 234789998776 4666656444444444443 34332
Q ss_pred ---------ceEEEecCCCceeEEEEEc--------------CCCeEEEEEeecchHHHHH
Q 046567 198 ---------KKIQVIAKARVPIVKFVEK--------------KSGVSFDIRHFMDICRVIR 235 (246)
Q Consensus 198 ---------~~V~~I~~ARVPIIKf~d~--------------~tgI~~DISfnn~g~~~~r 235 (246)
+--+.|.+|.=|+|-.+.. ..|=-+||-++|.--+-+|
T Consensus 106 ~VNHCigHIEMGR~iTgA~nPvvLYvSGGNTQvIAYse~rYrIFGETlDIAvGNClDRFAR 166 (336)
T KOG2708|consen 106 GVNHCIGHIEMGREITGAQNPVVLYVSGGNTQVIAYSEKRYRIFGETLDIAVGNCLDRFAR 166 (336)
T ss_pred cchhhhhhhhhcceeccCCCCEEEEEeCCceEEEEEccceeeeecceehhhhhhhHHHHHH
Confidence 2235688899998887642 2355578877775444333
No 54
>PRK08609 hypothetical protein; Provisional
Probab=44.74 E-value=89 Score=31.58 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCC
Q 046567 134 AVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 134 ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
+.+.|...++.+-|.++|.+=||+.-|.- --.||||+|..++
T Consensus 161 ~a~~i~~~l~~~~~~~~v~~~GS~RR~~e-t~gDiDili~~~~ 202 (570)
T PRK08609 161 IAQEIEEYLATIDEIIRFSRAGSLRRARE-TVKDLDFIIATDE 202 (570)
T ss_pred HHHHHHHHHHhCCCccEEEeccchhcccc-ccCCeeEEEecCC
Confidence 44555666666656789999999999987 4689999997754
No 55
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=43.59 E-value=1.7e+02 Score=23.75 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=40.7
Q ss_pred CCceEEEecccccCCC--CCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEE
Q 046567 147 PKCKPEVFGSFRTGLY--LPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDI 224 (246)
Q Consensus 147 P~~~V~~FGS~~tGL~--lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DI 224 (246)
.+.++++.|-++-.+- .+..|||+++.... ...+..+.+. .+. ++.. ...+-+.+++.. .|..+||
T Consensus 15 ~g~~~ylVGG~VRD~Llg~~~~DiDi~v~~~~----~~~~~~l~~~---~~~--~~v~-~~~~f~t~~v~~--~~~~~di 82 (139)
T cd05398 15 LGYEAYLVGGAVRDLLLGRPPKDIDIATDADG----PEFAEALFKK---IGG--RVVG-LGEEFGTATVVI--NGLTIDV 82 (139)
T ss_pred cCceEEEECChHHHHHcCCCCCCceEEEeCCC----HHHHHHHHHh---cCC--cEEe-cCCcccEEEEEE--CCEEEEE
Confidence 3788999999987543 46799999997642 1223333332 111 1111 124555555543 3788888
Q ss_pred Eeec
Q 046567 225 RHFM 228 (246)
Q Consensus 225 Sfnn 228 (246)
+.-.
T Consensus 83 ~~~R 86 (139)
T cd05398 83 ATLR 86 (139)
T ss_pred cccc
Confidence 7543
No 56
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO). This domain is found exclusively in the metazoa.
Probab=38.42 E-value=58 Score=29.52 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=28.3
Q ss_pred ecccccCCCCCC-CCceEEEecCCCCChhHHHHHHHHHHH
Q 046567 154 FGSFRTGLYLPT-SDIDVVIMESGIHNPATGLQALSRALL 192 (246)
Q Consensus 154 FGS~~tGL~lp~-SDIDl~I~~~~~~~~~~~L~~L~~~L~ 192 (246)
.||++.|+.+.+ -++|+||.+...++ ...|.++++.|.
T Consensus 2 VG~~aKGllL~Gd~~~eLVVlck~kPT-~~lL~~v~~~L~ 40 (248)
T PF07528_consen 2 VGSFAKGLLLKGDNDVELVVLCKEKPT-KELLNRVAEKLP 40 (248)
T ss_pred cceecCCceecCCceEeEEEEcCCCCc-HHHHHHHHHHHH
Confidence 499999999984 67899998876654 355666666554
No 57
>PF04229 GrpB: GrpB protein; InterPro: IPR007344 This family of uncharacterised proteins is also known as GrpB.; PDB: 2NRK_A.
Probab=37.85 E-value=79 Score=26.52 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=25.2
Q ss_pred ceEEEeccccc-CCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCC
Q 046567 149 CKPEVFGSFRT-GLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGI 196 (246)
Q Consensus 149 ~~V~~FGS~~t-GL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~ 196 (246)
+.|.-+||++- |+.-+. .|||.|..+..... ..+...|...|+
T Consensus 33 ~~IeHIGSTsVpgl~AKp-iIDI~v~V~~~~~~----~~~~~~L~~~Gy 76 (167)
T PF04229_consen 33 LRIEHIGSTSVPGLAAKP-IIDILVGVEDLEDL----DAYIEALEALGY 76 (167)
T ss_dssp EEEEEESGGGSTT--B-S--EEEEEEES-SGGG----GGGHHHHHHTT-
T ss_pred hEEEEeccceeCCcccCC-eeeEEeccCChHHH----HHHHHHHHHcCC
Confidence 48999999976 777555 89999887654322 233455655564
No 58
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins.
Probab=33.22 E-value=1.7e+02 Score=26.65 Aligned_cols=64 Identities=16% Similarity=0.217 Sum_probs=40.1
Q ss_pred eEEEecccccCCCCCC-CCceEEEecCCCCChhHHHHHHHHHHHh----CCCcceEEEecCCCceeEEEE
Q 046567 150 KPEVFGSFRTGLYLPT-SDIDVVIMESGIHNPATGLQALSRALLQ----RGIAKKIQVIAKARVPIVKFV 214 (246)
Q Consensus 150 ~V~~FGS~~tGL~lp~-SDIDl~I~~~~~~~~~~~L~~L~~~L~~----~~~~~~V~~I~~ARVPIIKf~ 214 (246)
-|.-.||++.|+.+.+ -+.|+|+.+...++ ...+..+++.|-. ..--+-...+..+.+|.+++.
T Consensus 4 gV~rVG~~aKG~ll~Gd~~~~lVv~c~~~PT-~~ll~~v~~~l~e~l~~~~~~e~~~~~~~~~~~~~~~~ 72 (246)
T smart00572 4 GVMRVGSFAKGTLLKGDNVAELVLLCKEKPT-SELVARLARKLPEQLKAVTEDEALIIVTSTKEPTMEVG 72 (246)
T ss_pred ceEEeeeeccCceecCCCceeEEEEecCCCc-HHHHHHHHHHHHHHHhhcCcccceeeeeccCCCceeEE
Confidence 3667899999999984 78899999876654 3456666665543 111111223345555666554
No 59
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=32.76 E-value=1.3e+02 Score=32.53 Aligned_cols=27 Identities=19% Similarity=0.067 Sum_probs=24.3
Q ss_pred ceEEEecccccCCCCCCCCceEEEecC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMES 175 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~ 175 (246)
..|..+|++..+=-.+.||||++++..
T Consensus 724 ~avia~Gk~Gr~EL~~~SDlDl~fl~~ 750 (1007)
T PRK14109 724 IAVIGMGRLGGRELGYGSDADVMFVHE 750 (1007)
T ss_pred EEEEEeccccccccCCCCCCcEEEEeC
Confidence 468899999999999999999999875
No 60
>PRK14109 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; Provisional
Probab=32.33 E-value=1.6e+02 Score=31.99 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.8
Q ss_pred ceEEEecccccCCCCCCCCceEEEecC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMES 175 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~ 175 (246)
..|..+|++..+=-.+.||||++++.+
T Consensus 216 ~aviamGklG~~EL~~~SDiDLi~ly~ 242 (1007)
T PRK14109 216 LAVIAMGKCGARELNYVSDVDVIFVAE 242 (1007)
T ss_pred eEEEEeccccccccCCccCCCEEEEeC
Confidence 468888999999999999999998875
No 61
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=29.60 E-value=3.4e+02 Score=25.98 Aligned_cols=86 Identities=17% Similarity=0.197 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHH-HHhCCCHHHHHHH-----------------HHHHHHHHHHHHhhCCC--ceEEEeccccc-CCCCC
Q 046567 106 PMLQLHKEIVDFC-DFLSPTSDEREVR-----------------NTAVEAVFDVIKYIWPK--CKPEVFGSFRT-GLYLP 164 (246)
Q Consensus 106 ~~~~L~~EI~~f~-~~l~Pt~eE~~~R-----------------~~ii~~l~~vv~~~~P~--~~V~~FGS~~t-GL~lp 164 (246)
....+-.++..++ +++.|-..+.+.| ...+...+..|+...++ ..|+-+||++- ||.-+
T Consensus 178 s~e~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~ydp~W~~~f~~e~~~l~~~l~~~~~~IeHIGSTsVpGl~AK 257 (395)
T PRK03333 178 TPDELVEAVRALWADRLLPFAHNLRARRRAARAPPRLVPADPSWPAQAQRIVARLKTAAGHKALRVDHIGSTAVPGLDAK 257 (395)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCceEeCCCCCcHHHHHHHHHHHHHhcCccceEEEEeccCCCCCCccC
Confidence 4567777776654 7777888886654 24566677777766554 57999999854 77755
Q ss_pred CCCceEEEecCCCCChhHHHHHHHHHHHhCCC
Q 046567 165 TSDIDVVIMESGIHNPATGLQALSRALLQRGI 196 (246)
Q Consensus 165 ~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~ 196 (246)
. .|||.|...... .+..+...|...|.
T Consensus 258 P-iIDI~v~V~~~~----~~~~~~~~l~~~Gy 284 (395)
T PRK03333 258 D-VIDIQVTVESLA----VADELAEPLAAAGF 284 (395)
T ss_pred C-eeeEEEeeCChH----HHHHHHHHHHHCCC
Confidence 5 888888776543 23345566666665
No 62
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=24.53 E-value=73 Score=22.99 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEecccccCCC
Q 046567 130 VRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLY 162 (246)
Q Consensus 130 ~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~ 162 (246)
.+..+-..|.+-|++.||++.|.+==+..+|+.
T Consensus 5 a~~AL~~EL~kRl~~~yPd~~v~Vr~~s~~~l~ 37 (65)
T PF06183_consen 5 ALEALESELTKRLHRQYPDAEVRVRPGSANGLS 37 (65)
T ss_dssp HHHHHHHHHHHHHHHH-SS-EEEEEEESS-EEE
T ss_pred HHHHHHHHHHHHHHHHCCCceEeeeecccCccc
Confidence 456677778888888999988776544556554
No 63
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=23.85 E-value=1.3e+02 Score=25.10 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=22.8
Q ss_pred CCceEEEecccccCCCCCCCCce---EEEe
Q 046567 147 PKCKPEVFGSFRTGLYLPTSDID---VVIM 173 (246)
Q Consensus 147 P~~~V~~FGS~~tGL~lp~SDID---l~I~ 173 (246)
-+.-+..||.|.+|+++..++++ +++.
T Consensus 29 ~d~Ill~YG~Cg~~~g~~~~~~~~~~~~~~ 58 (166)
T PF07796_consen 29 YDGILLFYGLCGNGLGLIARRLPELGLVIP 58 (166)
T ss_pred CCeEEEEEeCCCCccchhhhhccccceeEe
Confidence 35678899999999998999999 7774
No 64
>COG4773 FhuE Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]
Probab=22.64 E-value=75 Score=33.08 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEec
Q 046567 127 EREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIA 204 (246)
Q Consensus 127 E~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~ 204 (246)
.++++++-+..|.+++++. ++..|..|+|-.++.+-.+..||=+-.. +++.-...+......+....++..|+|+.
T Consensus 91 ~Qrm~Dqnl~tldeam~~t-tGisv~~~d~dr~~yysRGf~idn~~~D-Gipt~~~~~~~~g~~~~D~a~ydRVEVvR 166 (719)
T COG4773 91 RQRMDDQNLNTLDEAMKNT-TGISVQQYDSDRTGYYSRGFYIDNYMID-GIPTVAATRKNDGSALTDLAAYDRVEVVR 166 (719)
T ss_pred hhhhhhhchhhHHHHHhcC-CCeeEEecCCccceeEecceeeeheecc-CchhHHHHHhhcCCCchhhhhheeeEEEe
Confidence 4678888899999999985 8999999999999999999999954432 23211122233333333334455666653
No 65
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=22.63 E-value=4.9e+02 Score=22.23 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=38.6
Q ss_pred CceEEEe-cccccCCC-----CCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeE
Q 046567 148 KCKPEVF-GSFRTGLY-----LPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVS 221 (246)
Q Consensus 148 ~~~V~~F-GS~~tGL~-----lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~ 221 (246)
++.+.++ |.....++ .+.+|||+.|.... +.++.+.|...|+..... ... =..+.+...|+.
T Consensus 71 gI~~~~lKG~~l~~~Y~~~~~R~~~DiDlLV~~~d-------~~~a~~~L~~~Gy~~~~~---~~~--~~~~~~~~~~~~ 138 (249)
T PF14907_consen 71 GIPVILLKGAALAQLYPDPGLRPMGDIDLLVPPED-------LERAVELLEELGYRIESP---SEH--HWVYSHEPKGIS 138 (249)
T ss_pred CCCEEEEchHHHHHhCCCCCCCCCCCeEEEEeCCc-------HHHHHHHHHHcCCEeccC---CCc--ceEEEecCCCEE
Confidence 5777777 55544322 33599999997322 456667777777621111 111 112222257888
Q ss_pred EEEEeec
Q 046567 222 FDIRHFM 228 (246)
Q Consensus 222 ~DISfnn 228 (246)
||+-..-
T Consensus 139 idlH~~l 145 (249)
T PF14907_consen 139 IDLHWRL 145 (249)
T ss_pred EEEEecC
Confidence 8887664
No 66
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=20.12 E-value=3.1e+02 Score=24.34 Aligned_cols=77 Identities=23% Similarity=0.279 Sum_probs=46.9
Q ss_pred HHHHHHHHhhCCCceEEEecccccCC---CCCCCCceEEEecCCCC---------------------------Chh----
Q 046567 136 EAVFDVIKYIWPKCKPEVFGSFRTGL---YLPTSDIDVVIMESGIH---------------------------NPA---- 181 (246)
Q Consensus 136 ~~l~~vv~~~~P~~~V~~FGS~~tGL---~lp~SDIDl~I~~~~~~---------------------------~~~---- 181 (246)
+.+.+.++++.|+++|..+-.+.+.- .+-.++.|++|...+.. +|.
T Consensus 68 e~~~~~l~~inP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i 147 (231)
T cd00755 68 EVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRV 147 (231)
T ss_pred HHHHHHHHHHCCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEE
Confidence 33455566678888888776554421 11234578777653210 110
Q ss_pred ---------HHHHHHHHHHHhCCCcceEEEecCCCceeEE
Q 046567 182 ---------TGLQALSRALLQRGIAKKIQVIAKARVPIVK 212 (246)
Q Consensus 182 ---------~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIK 212 (246)
-..+.+.+.|++.++..++.++.....|+-.
T Consensus 148 ~di~~t~~~pla~~~R~~Lrk~~~~~~~~~v~S~E~~~~~ 187 (231)
T cd00755 148 ADISKTSGDPLARKVRKRLRKRGIFFGVPVVYSTEPPDPP 187 (231)
T ss_pred ccEeccccCcHHHHHHHHHHHcCCCCCeEEEeCCCCCCCC
Confidence 2466788888888876678888887776654
Done!