Query 046567
Match_columns 246
No_of_seqs 145 out of 1255
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 23:42:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nyb_A Poly(A) RNA polymerase 100.0 5.1E-31 1.8E-35 242.0 17.9 143 93-235 2-148 (323)
2 3pq1_A Poly(A) RNA polymerase; 99.9 3E-27 1E-31 226.6 17.4 123 107-229 131-279 (464)
3 3hj4_A Minor editosome-associa 99.9 1.6E-26 5.5E-31 216.8 16.2 121 107-229 4-135 (384)
4 4e8f_A Poly(A) RNA polymerase 99.9 3.8E-26 1.3E-30 215.7 16.1 124 104-229 38-166 (405)
5 4fh3_A Poly(A) RNA polymerase 99.9 1.1E-24 3.8E-29 199.9 16.6 120 108-229 14-138 (349)
6 2ikf_A RNA uridylyl transferas 99.9 4.7E-24 1.6E-28 197.5 13.8 122 107-229 25-162 (353)
7 2hhp_A Poly(A) polymerase; tem 99.9 3.9E-21 1.3E-25 187.0 17.7 120 106-228 21-159 (530)
8 1q79_A Poly(A) polymerase alph 99.9 4.1E-21 1.4E-25 186.3 16.7 120 107-228 35-172 (514)
9 2b4v_A RNA editing complex pro 99.9 4E-21 1.4E-25 184.5 14.2 112 103-214 13-132 (468)
10 1no5_A Hypothetical protein HI 98.5 7.7E-07 2.6E-11 69.3 10.1 70 133-203 12-81 (114)
11 1ylq_A Putative nucleotidyltra 98.4 1.1E-06 3.8E-11 66.5 7.4 43 134-176 3-46 (96)
12 1wot_A Putative minimal nucleo 98.0 2.1E-05 7.1E-10 59.6 7.3 56 136-193 14-69 (98)
13 1px5_A 2'-5'-oligoadenylate sy 97.9 4.4E-05 1.5E-09 69.9 9.6 114 113-226 10-150 (349)
14 2rff_A Putative nucleotidyltra 97.8 2.8E-05 9.6E-10 60.6 6.3 47 130-176 11-61 (111)
15 1r89_A TRNA nucleotidyltransfe 97.8 0.0003 1E-08 67.0 13.0 106 111-224 4-111 (437)
16 4ebj_A Aminoglycoside nucleoti 97.1 0.0006 2E-08 60.7 6.1 42 135-176 26-68 (272)
17 1kny_A Kntase, kanamycin nucle 97.0 0.00062 2.1E-08 59.6 4.8 45 132-176 13-59 (253)
18 4at7_A Interleukin enhancer-bi 96.6 0.034 1.2E-06 51.6 13.3 88 107-194 24-123 (364)
19 2fmp_A DNA polymerase beta; nu 94.4 0.14 4.9E-06 46.6 8.7 96 132-228 156-261 (335)
20 2bcq_A DNA polymerase lambda; 93.9 0.19 6.5E-06 45.9 8.5 96 132-228 153-255 (335)
21 3jz0_A Lincosamide nucleotidyl 93.1 0.1 3.4E-06 46.9 5.1 54 122-176 15-69 (287)
22 2ihm_A POL MU, DNA polymerase 88.6 0.69 2.4E-05 42.5 6.2 66 132-198 160-225 (360)
23 2pbe_A AAD6, aminoglycoside 6- 84.8 3.1 0.00011 37.0 8.2 43 133-176 8-53 (294)
24 1jms_A Terminal deoxynucleotid 84.2 2.3 8E-05 39.3 7.3 66 132-198 180-247 (381)
25 1jaj_A DNA polymerase beta-lik 76.2 3.1 0.0001 34.5 4.7 74 146-228 29-105 (174)
26 3b0x_A DNA polymerase beta fam 75.8 13 0.00046 35.7 9.8 107 108-228 142-248 (575)
27 2fcl_A Hypothetical protein TM 73.2 24 0.00081 28.7 9.4 58 131-195 15-76 (169)
28 4at7_B NF90, interleukin enhan 66.0 24 0.00082 32.8 8.7 78 114-192 16-135 (383)
29 1v4a_A Glutamate-ammonia-ligas 53.0 39 0.0013 31.4 7.9 27 149-175 155-181 (440)
30 3er9_B Poly(A) polymerase cata 45.8 22 0.00074 33.5 4.7 67 105-173 132-208 (479)
31 3k7d_A Glutamate-ammonia-ligas 40.4 67 0.0023 30.6 7.4 27 149-175 235-261 (498)
32 3c18_A Nucleotidyltransferase- 29.1 34 0.0012 30.6 3.1 29 149-177 21-49 (290)
33 3tr3_A BOLA; cellular processe 28.4 1.2E+02 0.0042 21.7 5.5 52 135-193 7-60 (82)
34 4go7_X Aspartokinase; transfer 27.4 1.6E+02 0.0054 24.4 6.8 63 170-246 118-181 (200)
35 4e8j_A Lincosamide resistance 26.1 1.9E+02 0.0066 23.4 6.9 76 137-226 13-93 (161)
36 3h38_A TRNA nucleotidyl transf 22.6 2.2E+02 0.0077 26.4 7.6 81 133-227 21-103 (441)
No 1
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.1e-31 Score=242.00 Aligned_cols=143 Identities=34% Similarity=0.574 Sum_probs=128.2
Q ss_pred CCCCCCCCC--CCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceE
Q 046567 93 ENRWFKGNS--RFKSPMLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDV 170 (246)
Q Consensus 93 ~~pW~~~~~--~~~~~~~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl 170 (246)
++||+..+. ..++...+||+||.+|+++++|+++|.+.|+.+++.|++++++.||+++|++|||+++|+++|+||||+
T Consensus 2 ~~pw~~~~~~~~~~~~~~~L~~Ei~~f~~~i~Pt~eE~~~R~~~~~~l~~~~~~~~p~~~v~~fGS~~~g~~~~~SDiDl 81 (323)
T 3nyb_A 2 SYPWILNHDHSKQKEISDWLTFEIKDFVAYISPSREEIEIRNQTISTIREAVKQLWPDADLHVFGSYSTDLYLPGSDIDC 81 (323)
T ss_dssp CCGGGTTCCCTTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEEESTTTTTCCCTTSCEEE
T ss_pred CCCCccCCCccccchHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCccccCCCCCCCCceE
Confidence 579998654 456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-ChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeecc-hHHHHH
Q 046567 171 VIMESGIH-NPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFMD-ICRVIR 235 (246)
Q Consensus 171 ~I~~~~~~-~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn~-g~~~~r 235 (246)
+|..+... .....|+.+++.|++.+++.+|++|.+||||||||+|+.+|++|||||+|. |.+.++
T Consensus 82 ~v~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~~~g~~~t~ 148 (323)
T 3nyb_A 82 VVTSELGGKESRNNLYSLASHLKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFERTNGIEAAK 148 (323)
T ss_dssp EECSSCCGGGHHHHHHHHHHHHHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSCSSTTHHHH
T ss_pred EEecCCCChhHHHHHHHHHHHHhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecCcHHHHHHH
Confidence 99987532 235678999999999999899999999999999999999999999999984 433333
No 2
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=99.95 E-value=3e-27 Score=226.55 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCC-------
Q 046567 107 MLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHN------- 179 (246)
Q Consensus 107 ~~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~------- 179 (246)
...|++||.+|+++++||++|.+.|..++++|+++++..||+|+|++|||++|||++|+|||||||..++...
T Consensus 131 a~sl~~EI~~f~~~i~PT~eE~~~R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~ 210 (464)
T 3pq1_A 131 AESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKIS 210 (464)
T ss_dssp SSSHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEE
T ss_pred cchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCCcccccccccc
Confidence 3569999999999999999999999999999999999999999999999999999999999999997643110
Q ss_pred ------------------hhHHHHHHHHHHHhCC-CcceEEEecCCCceeEEEEEcCCCeEEEEEeecc
Q 046567 180 ------------------PATGLQALSRALLQRG-IAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFMD 229 (246)
Q Consensus 180 ------------------~~~~L~~L~~~L~~~~-~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn~ 229 (246)
-+..|+.+++.|++.. .+.+|+.|.+||||||||+++.+|+.|||||||.
T Consensus 211 g~~~le~~~k~l~seR~~~~~iL~~la~~L~~~~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~ 279 (464)
T 3pq1_A 211 GNFLMEFQVKNVPSERIATQKILSVLGECLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTTNNR 279 (464)
T ss_dssp CC---EECCCCCSCHHHHHHHHHHHHHHHHHHSSTTEEEEEEECSSSSCEEEEEETTTCCEEEEECSCT
T ss_pred cchhhhhhhccchhhHHHHHHHHHHHHHHHHhcCCCCceeEEecCCCCCEEEEEEcCCCeEEEEecCCC
Confidence 0246788899998753 4578999999999999999999999999999995
No 3
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=99.94 E-value=1.6e-26 Score=216.79 Aligned_cols=121 Identities=19% Similarity=0.318 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCC-----hh
Q 046567 107 MLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHN-----PA 181 (246)
Q Consensus 107 ~~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~-----~~ 181 (246)
-..||+||.+|+++++||++|.++|..++++|+++|++.||+++|++|||+.||+++|+||||+||..++... .+
T Consensus 4 ~~~lt~EI~dFy~~i~PT~eE~~~R~~vv~~l~~ii~~~~p~~~v~~FGS~~tgl~lp~SDiDlvI~~~~~~~~~~~~~~ 83 (384)
T 3hj4_A 4 KREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMER 83 (384)
T ss_dssp HHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHSTTCEEEEESHHHHSCCCTTCCEEEEEECTTCCGGGTTCHH
T ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeeccCCCCCCCCCeeEEEecCCCcccccccch
Confidence 3579999999999999999999999999999999999999999999999999999999999999998764321 11
Q ss_pred ----HH--HHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeecc
Q 046567 182 ----TG--LQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFMD 229 (246)
Q Consensus 182 ----~~--L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn~ 229 (246)
.. +.++++.+...+ +++|.++ +||||||||+|+.+|+.|||||||.
T Consensus 84 ~~~~~~lrll~L~k~~~~~~-ie~V~ii-~ARVPIIKf~d~~tgi~~DIS~nn~ 135 (384)
T 3hj4_A 84 VDEQNNKRMTRFGKEASAMG-MEDVRYI-RARIPVVQFTDGVTGIHCDVSIGNI 135 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-CEEEEEE-CSSSCEEEEECTTTCCEEEEEECCH
T ss_pred hhHHHHHHHHHHHhhcccCC-eeEEeec-CcccCEEEEEEcCCCeEEEEEeccc
Confidence 11 112333333333 3566654 9999999999999999999999994
No 4
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=99.94 E-value=3.8e-26 Score=215.74 Aligned_cols=124 Identities=20% Similarity=0.293 Sum_probs=112.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHH
Q 046567 104 KSPMLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATG 183 (246)
Q Consensus 104 ~~~~~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~ 183 (246)
.+.+..|+.+|.+|+++++|+++|.+.|+.++++|++++++.||+++|++|||+++|+++|+||||+||..+........
T Consensus 38 ~~~~~~L~~~i~~~~~~i~Pt~eE~~~R~~v~~~l~~~i~~~~p~~~v~~fGS~~~G~~~~~SDiDl~v~~~~~~~~~~~ 117 (405)
T 4e8f_A 38 PNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTI 117 (405)
T ss_dssp CCSCHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEESHHHHTCCBSSCCEEEEEECCC---CTTH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEEecCCCCHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999998753334457
Q ss_pred HHHHHHHHHhCCCcceEEEecCCCceeEEEE-EcCC----CeEEEEEeecc
Q 046567 184 LQALSRALLQRGIAKKIQVIAKARVPIVKFV-EKKS----GVSFDIRHFMD 229 (246)
Q Consensus 184 L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~-d~~t----gI~~DISfnn~ 229 (246)
+.++++.|++. ..+++.|.+||||||||+ |+.+ ||.|||||+|.
T Consensus 118 l~~l~~~L~~~--~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n~ 166 (405)
T 4e8f_A 118 ALQFYEELIAE--GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNR 166 (405)
T ss_dssp HHHHHHHHHHT--TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESCH
T ss_pred HHHHHHHHHhc--CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeeccc
Confidence 88999999887 358899999999999999 8888 99999999985
No 5
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=99.92 E-value=1.1e-24 Score=199.86 Aligned_cols=120 Identities=21% Similarity=0.308 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHH
Q 046567 108 LQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQAL 187 (246)
Q Consensus 108 ~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L 187 (246)
..|.+.+.+++++++|+++|.+.|+.++++|+++|++.||+|+|++|||+++|+++|+||||+||..+...........+
T Consensus 14 ~el~~~~~~l~~~~~pt~~e~~~R~~~~~~l~~~i~~~~p~~~v~~fGS~~~g~~~~~SDiDl~v~~~~~~~~~~~~~~~ 93 (349)
T 4fh3_A 14 KEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESGLALKNSDMDLCVLMDSRVQSDTIALQF 93 (349)
T ss_dssp HHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHTTCTTCEEEEESHHHHTCCBSSCCEEEEEECCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccCCCCCCCCCEEEEEecCCCCChHHHHHHH
Confidence 44555566668999999999999999999999999999999999999999999999999999999987654444444455
Q ss_pred HHHHHhCCCcceEEEecCCCceeEEEEEcC-----CCeEEEEEeecc
Q 046567 188 SRALLQRGIAKKIQVIAKARVPIVKFVEKK-----SGVSFDIRHFMD 229 (246)
Q Consensus 188 ~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~-----tgI~~DISfnn~ 229 (246)
...+.... .++++|.+||||||||+++. +|+.||||++|.
T Consensus 94 ~~~~~~~~--~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~~~ 138 (349)
T 4fh3_A 94 YEELIAEG--FEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNNR 138 (349)
T ss_dssp HHHHHHTT--EEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEESCH
T ss_pred HHHHHhhc--ccceEeeeeeeeeEEEEecccccccccceeecCcCcc
Confidence 55555543 36788999999999999874 689999999984
No 6
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=99.91 E-value=4.7e-24 Score=197.51 Aligned_cols=122 Identities=20% Similarity=0.307 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccc-cCCCCCCCCceEEEecCC-----CC-C
Q 046567 107 MLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFR-TGLYLPTSDIDVVIMESG-----IH-N 179 (246)
Q Consensus 107 ~~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~-tGL~lp~SDIDl~I~~~~-----~~-~ 179 (246)
...|+.+|.++++.+.++..|.+.|+.++++|+++|++.||+++|++|||+. +|+++|+||||+||..+. .. +
T Consensus 25 ~~~l~~~l~~~~~~~~~~~~e~~~r~~~~~~l~~~i~~~~p~~~v~~FGS~~vtGl~lp~SDIDl~v~~~~~~~~~~~~~ 104 (353)
T 2ikf_A 25 PAVVGRSLVNSFKQFVSKDLHTRHVDATYRLVLDCVAAVDPLMRLYTFGSTVVYGVHEKGSDVDFVVLNKTDVEDGKGGD 104 (353)
T ss_dssp HHHHHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHHCTTCEEEEESHHHHHSSCCTTCCEEEEEECHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHCCCcEEEEecCccccCCCCCCcceeEEEeeccccccccccc
Confidence 4668999999999999999999999999999999999999999999999997 999999999999997642 11 1
Q ss_pred -h--------hHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeecc
Q 046567 180 -P--------ATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFMD 229 (246)
Q Consensus 180 -~--------~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn~ 229 (246)
+ ...|.++++.|++.+.+.+|++|.+||||||||++ .+||.|||||+|.
T Consensus 105 ~~~~~~~~~~~~~l~~l~~~L~~~~~~~~v~~i~~ArVPIiK~~~-~~~i~~Dis~~n~ 162 (353)
T 2ikf_A 105 AATQVAKGLQADILAKLARVIRQKHLSWNVEEVRRTRVPVVRVKG-GGAVDFDITAYRR 162 (353)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECSSSSCEEEEEC-SSSCEEEEEESCC
T ss_pred chhhhhhhhHHHHHHHHHHHHHhcCCCCceEEecccceeEEEEEc-CCCcEEEEEecCc
Confidence 1 35688899999998888999999999999999999 4899999999995
No 7
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=99.86 E-value=3.9e-21 Score=186.96 Aligned_cols=120 Identities=22% Similarity=0.248 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhhCC-----------------CceEEEecccccCCCCCCC
Q 046567 106 PMLQLHKEIVDFCDF--LSPTSDEREVRNTAVEAVFDVIKYIWP-----------------KCKPEVFGSFRTGLYLPTS 166 (246)
Q Consensus 106 ~~~~L~~EI~~f~~~--l~Pt~eE~~~R~~ii~~l~~vv~~~~P-----------------~~~V~~FGS~~tGL~lp~S 166 (246)
.-..++.+|.++++. +.||++|.+.|+++++.|+++|++ |+ +++|++|||+.+|+++|+|
T Consensus 21 ~d~~~~~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~-w~~~v~~~~~~~~~~~~~~~~~V~~FGSy~lG~~~p~S 99 (530)
T 2hhp_A 21 AENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQR-FVYEVSKKKNMSDGMARDAGGKIFTYGSYRLGVHGPGS 99 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCCHHHHHHTBCEEEEEHHHHHTCCCTTC
T ss_pred HHhhhhHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCChhhccccCceEEEecccccCCCCCCC
Confidence 445677788887776 889999999999999999999997 52 6999999999999999999
Q ss_pred CceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeec
Q 046567 167 DIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFM 228 (246)
Q Consensus 167 DIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn 228 (246)
|||++++.++....+..+..++..|++...++++++|.+|+||||||+. +||+|||+|++
T Consensus 100 DID~~v~~p~~~~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~ 159 (530)
T 2hhp_A 100 DIDTLVVVPKHVTREDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKF--SGISIDLICAR 159 (530)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEE
T ss_pred ceeEEEecCCcCCHHHHHHHHHHHHhcCCCCceEEEecCCcccEEEEEE--CCEeeEEEEec
Confidence 9999999987655667888999999987778999999999999999986 89999999975
No 8
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=99.86 E-value=4.1e-21 Score=186.28 Aligned_cols=120 Identities=19% Similarity=0.223 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhh----------------CCCceEEEecccccCCCCCCCCc
Q 046567 107 MLQLHKEIVDFCDF--LSPTSDEREVRNTAVEAVFDVIKYI----------------WPKCKPEVFGSFRTGLYLPTSDI 168 (246)
Q Consensus 107 ~~~L~~EI~~f~~~--l~Pt~eE~~~R~~ii~~l~~vv~~~----------------~P~~~V~~FGS~~tGL~lp~SDI 168 (246)
-..++.+|..+++. +.|+++|.+.|+++++.|+++|+.+ .++++|++|||+.+|+++|+|||
T Consensus 35 d~~~t~~L~~~l~~~~~~ps~ee~~~R~~vl~~L~~lv~~wv~~v~~~~~~~~~~~~~~~~~v~~FGS~~lG~~~p~SDI 114 (514)
T 1q79_A 35 DALLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADI 114 (514)
T ss_dssp HHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCE
T ss_pred HHHhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhcccCCceEEEeeeeccCCCCCCCce
Confidence 45667777777765 8899999999999999999999953 25799999999999999999999
Q ss_pred eEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeec
Q 046567 169 DVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFM 228 (246)
Q Consensus 169 Dl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn 228 (246)
|++++.+.....+..+..++..|++...++++++|.+|+||||||+. +||+|||+|++
T Consensus 115 D~~~v~p~~~~~~dff~~l~~~L~~~~~v~~v~~I~~A~VPIIK~~~--~gi~vDL~f~~ 172 (514)
T 1q79_A 115 DALCVAPRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCF--DGIEIDILFAR 172 (514)
T ss_dssp EEEEEECTTSCHHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEE
T ss_pred eEEEecCCcCCHHHHHHHHHHHHhcCccCceEEEecCCcccEEEEEE--CCeeEEEEEec
Confidence 99999987655667788899999987778999999999999999986 79999999986
No 9
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=99.85 E-value=4e-21 Score=184.51 Aligned_cols=112 Identities=16% Similarity=0.105 Sum_probs=97.3
Q ss_pred CCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccc-ccCCCCCCCCceEEEecCCCC-C-
Q 046567 103 FKSPMLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSF-RTGLYLPTSDIDVVIMESGIH-N- 179 (246)
Q Consensus 103 ~~~~~~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~-~tGL~lp~SDIDl~I~~~~~~-~- 179 (246)
.++.+..|++.|.++.....+++++.+.|..++++|+.+++++||+++|++|||+ .+|+++|+||||+|+...+.. .
T Consensus 13 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~~~~~~ 92 (468)
T 2b4v_A 13 SPDHYAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSH 92 (468)
T ss_dssp CHHHHHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCH
T ss_pred ChHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCCCCccc
Confidence 4467899999999999999999999999999999999999999999999999999 699999999999999986421 1
Q ss_pred hh--HHHHHHHHHHHhC--C-CcceEEEecCCCceeEEEE
Q 046567 180 PA--TGLQALSRALLQR--G-IAKKIQVIAKARVPIVKFV 214 (246)
Q Consensus 180 ~~--~~L~~L~~~L~~~--~-~~~~V~~I~~ARVPIIKf~ 214 (246)
.. ..+.+|++.|++. + .+.++++|.+||||||||+
T Consensus 93 ~~~~~~~~~l~~~L~~~~~~~~~~~v~~I~~ArVPIIK~~ 132 (468)
T 2b4v_A 93 EVQAKRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLR 132 (468)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEEC
T ss_pred hhhHHHHHHHHHHHHHhccccccceeEeccCCCcceEEEE
Confidence 11 2345689999887 5 2579999999999999997
No 10
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5
Probab=98.50 E-value=7.7e-07 Score=69.25 Aligned_cols=70 Identities=17% Similarity=0.239 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEe
Q 046567 133 TAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVI 203 (246)
Q Consensus 133 ~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I 203 (246)
..++.+.+++++.++-.++++|||++.|-+.++|||||+|......+. ..+..+...|.....-..|.++
T Consensus 12 ~~~~~i~~~l~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~~~~~-~~~~~l~~~l~~~~~~~~vDlv 81 (114)
T 1no5_A 12 EELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDF-LARDRLKEAFSESDLPWRVDLL 81 (114)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSCCCH-HHHHHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeccCCCCCCCCCCeEEEEEeCCCCCH-HHHHHHHHHHHhcCCCCcEeEE
Confidence 445667788888777789999999999999999999999987643222 2344666667664332345554
No 11
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=98.35 E-value=1.1e-06 Score=66.50 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhCCCceEEEecccccCCCCCC-CCceEEEecCC
Q 046567 134 AVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPT-SDIDVVIMESG 176 (246)
Q Consensus 134 ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~-SDIDl~I~~~~ 176 (246)
+++.+...+++.++..++++|||++.|-+.++ ||||++|..+.
T Consensus 3 ~l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 3 HMKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC
Confidence 46778888888888899999999999999999 99999998754
No 12
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=97.96 E-value=2.1e-05 Score=59.60 Aligned_cols=56 Identities=25% Similarity=0.223 Sum_probs=37.7
Q ss_pred HHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHh
Q 046567 136 EAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQ 193 (246)
Q Consensus 136 ~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~ 193 (246)
+.++.++++ |+-..+++|||++.|-+.++||||++|......+.. .+..+...|..
T Consensus 14 ~~i~~l~~~-~~v~~v~LFGS~arG~~~~~SDiDl~V~~~~~~~~~-~~~~l~~~l~~ 69 (98)
T 1wot_A 14 EAVLSLCAR-HGAVRVRVFGSVARGEAREDSDLDLLVAFEEGRTLL-DHARLKLALEG 69 (98)
T ss_dssp HHHHHHHHH-HTCSSCEECSHHHHTCCCTTCCCEEEECCCSSCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCcEEEEEccccCCCCCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 334444444 455789999999999999999999999765322222 24455555543
No 13
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=97.89 E-value=4.4e-05 Score=69.90 Aligned_cols=114 Identities=24% Similarity=0.318 Sum_probs=67.6
Q ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHhh-CCC-------ceEEEecccccCCCCC-CCCceEEEecCCCCCh--
Q 046567 113 EIVDFC-DFLSPTSDEREVRNTAVEAVFDVIKYI-WPK-------CKPEVFGSFRTGLYLP-TSDIDVVIMESGIHNP-- 180 (246)
Q Consensus 113 EI~~f~-~~l~Pt~eE~~~R~~ii~~l~~vv~~~-~P~-------~~V~~FGS~~tGL~lp-~SDIDl~I~~~~~~~~-- 180 (246)
++..|+ +.|+|+.+++..-..+++.|...|+.. +.+ .++...||++.|++++ .|||||+|+.+.....
T Consensus 10 ~l~~fi~~~l~p~~~~~~~i~~~~~~I~~~L~~~~~~~~~~~~~v~~v~~~GSyargT~lrg~sDiDlvV~l~~~~~~~~ 89 (349)
T 1px5_A 10 DLDKFIEDHLLPNTXFRTQVKEAIDIVXRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFED 89 (349)
T ss_dssp GHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTTH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhhcccccCCcceEEEEEecCcCCCcccCCCCceeEEEEECCCCchhh
Confidence 456677 899999999998889999999999873 322 3667889999999999 5999999988754321
Q ss_pred -----hHHHHHHHHHHHh----CCCcceEEEec-CCCce-eEEEE--Ec--CCCeEEEEEe
Q 046567 181 -----ATGLQALSRALLQ----RGIAKKIQVIA-KARVP-IVKFV--EK--KSGVSFDIRH 226 (246)
Q Consensus 181 -----~~~L~~L~~~L~~----~~~~~~V~~I~-~ARVP-IIKf~--d~--~tgI~~DISf 226 (246)
...+..+.+.|.. ..+-.+.++.. .-+.| .|.|. .. ..++++||.-
T Consensus 90 ~~~~~~~~l~~i~~~L~~~~~~~~~~~~~ev~~~~~~~p~~v~~~~~~~~~~~~~~vDVvP 150 (349)
T 1px5_A 90 QLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVLP 150 (349)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEEE
T ss_pred HHhhHHHHHHHHHHHHHHhhhhhccccceeEecccccCCceEEEEEEccCcCCceEEEEEE
Confidence 2355666666654 22212444431 11345 24443 21 2579999753
No 14
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=97.84 E-value=2.8e-05 Score=60.55 Aligned_cols=47 Identities=28% Similarity=0.458 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHH---hhCCC-ceEEEecccccCCCCCCCCceEEEecCC
Q 046567 130 VRNTAVEAVFDVIK---YIWPK-CKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 130 ~R~~ii~~l~~vv~---~~~P~-~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
.+..+++.+++++. +.+|+ ..+++|||++.|-+.++|||||+|....
T Consensus 11 ~~~~i~~~l~~~~~~l~~~~~~v~~v~LFGS~ArG~~~~~SDIDl~V~~~~ 61 (111)
T 2rff_A 11 SQIRMLKLAKEIVEEVASSFPNLEEVYIFGSRARGDYLDTSDIDILFVFKG 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTEEEEEEESHHHHSCCCTTCCEEEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHcCCccEEEEEeeeecCCCCCCCCEEEEEEecC
Confidence 34455555555444 34665 6799999999999999999999998754
No 15
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=97.75 E-value=0.0003 Score=66.96 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCC-CCceEEEecCCCCChhHHHHHHHH
Q 046567 111 HKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPT-SDIDVVIMESGIHNPATGLQALSR 189 (246)
Q Consensus 111 ~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~-SDIDl~I~~~~~~~~~~~L~~L~~ 189 (246)
.+-+..|.+.+.|+.+|++.-..+++.|.+.|+. ++ +++..-||++.|+++++ |||||.+..+.... ...|...+-
T Consensus 4 ~~~~~~~l~~i~P~~~E~~~~~~~~~~I~~~L~~-~~-~~v~~~GS~AkgT~Lrg~sDIDIfv~f~~~~~-~e~l~~~~l 80 (437)
T 1r89_A 4 EEILEKALELVIPDEEEVRKGREAEEELRRRLDE-LG-VEYVFVGSYARNTWLKGSLEIDVFLLFPEEFS-KEELRERGL 80 (437)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH-HT-CCEEEEHHHHHTCCCTTCCEEEEEEEECTTSC-HHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHh-CC-CeEEEeccccCCCcCCCCCCceEEEEcCCCCC-HHHHHHHHH
Confidence 3446789999999999999999999999999998 44 79999999999999995 99999999875432 333333221
Q ss_pred -HHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEE
Q 046567 190 -ALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDI 224 (246)
Q Consensus 190 -~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DI 224 (246)
.++.. ..+.+ +..|.-|=|...- +|+.+||
T Consensus 81 ~~~~e~--l~~~~-~~ya~hpyV~~~f--~g~~vDV 111 (437)
T 1r89_A 81 EIGKAV--LDSYE-IRYAEHPYVHGVV--KGVEVDV 111 (437)
T ss_dssp HHHHHH--SSSEE-EEESSSEEEEEEE--TTEEEEE
T ss_pred HHHHHH--HHHhh-hhccCCceEEEEe--cceEEEE
Confidence 12110 01122 3345555555432 5777777
No 16
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=97.13 E-value=0.0006 Score=60.73 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCC-ceEEEecccccCCCCCCCCceEEEecCC
Q 046567 135 VEAVFDVIKYIWPK-CKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 135 i~~l~~vv~~~~P~-~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
++.+.+.+++.+++ .+|.+|||++.|-+.++|||||+|....
T Consensus 26 L~~ive~L~~~~~~i~~I~LFGS~ARG~~~~~SDIDilVv~~~ 68 (272)
T 4ebj_A 26 IARWVDRLREEYADAVAILLKGSYARGDAATWSDIDFDVLVST 68 (272)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHhcCCceEEEEEeceeCCCCCCCCceEEEEEecC
Confidence 44444555556775 6899999999999999999999998764
No 17
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A
Probab=96.98 E-value=0.00062 Score=59.63 Aligned_cols=45 Identities=22% Similarity=0.175 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhhCC--CceEEEecccccCCCCCCCCceEEEecCC
Q 046567 132 NTAVEAVFDVIKYIWP--KCKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 132 ~~ii~~l~~vv~~~~P--~~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
..+++.+...+++.|+ -.++.+|||++.|-+.++|||||+|....
T Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~lfGS~arg~~~~~SDiD~~v~~~~ 59 (253)
T 1kny_A 13 MKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (253)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEEccccCCCCCCCCCeeEEEEecC
Confidence 3455555666666666 36799999999999999999999987654
No 18
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*
Probab=96.58 E-value=0.034 Score=51.60 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhC--CC------ceEEEecccccCCCCCC-CCceEEEecCCC
Q 046567 107 MLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIW--PK------CKPEVFGSFRTGLYLPT-SDIDVVIMESGI 177 (246)
Q Consensus 107 ~~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~--P~------~~V~~FGS~~tGL~lp~-SDIDl~I~~~~~ 177 (246)
-..|++.|.+-.+.|.|+++|+..-..++..|+.+|.++. |+ ..|...||++.|+++.+ -|+|+||++...
T Consensus 24 d~~~~~~llkr~~~l~Ps~eEq~~v~~lv~kI~~~ld~liv~pg~~e~~L~~V~rVGs~aKgtll~G~~~~dlVvl~k~l 103 (364)
T 4at7_A 24 ETSFSEALLKRNQDLAPNSAEQASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKIL 103 (364)
T ss_dssp CHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCEEEEEEEHHHHHTCCCTTCCEEEEEEEESSC
T ss_pred hHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHHHHHhhhcCCCccccccceeEEeccccCCceecCCCceeEEEEecCC
Confidence 4689999999999999999999999999999999988753 43 35778899999999995 789999998776
Q ss_pred CChh---HHHHHHHHHHHhC
Q 046567 178 HNPA---TGLQALSRALLQR 194 (246)
Q Consensus 178 ~~~~---~~L~~L~~~L~~~ 194 (246)
+... ..+.++.+.|+..
T Consensus 104 PT~e~v~~L~~kV~e~L~~q 123 (364)
T 4at7_A 104 PTLEAVAALGNKVVESLRAQ 123 (364)
T ss_dssp CBHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhh
Confidence 5432 3456777777754
No 19
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.38 E-value=0.14 Score=46.64 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCC----hhHHHHHHHHHHHhCCCcceEEEecCCC
Q 046567 132 NTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHN----PATGLQALSRALLQRGIAKKIQVIAKAR 207 (246)
Q Consensus 132 ~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~----~~~~L~~L~~~L~~~~~~~~V~~I~~AR 207 (246)
..+.+.|.+.++.+-|.+++.+=||+.-|.-+ ..|||++|..++... ....+..+-..|.+.+++..+......|
T Consensus 156 ~~ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~~~~~l~~~v~~~l~~~~~v~~~l~~g~~k 234 (335)
T 2fmp_A 156 LQMQDIVLNEVKKVDSEYIATVCGSFRRGAES-SGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETK 234 (335)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECHHHHTTCSE-ESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSE
T ss_pred HHHHHHHHHHHHhcCCCcEEEeccccccccCc-cCCeEEEEECCCccccccchhhhHHHHHHHHHhCCcceeeeecCCce
Confidence 34556666777777889999999999999885 789999998774321 1135678888898888877666655555
Q ss_pred ceeE-EEEEcC-----CCeEEEEEeec
Q 046567 208 VPIV-KFVEKK-----SGVSFDIRHFM 228 (246)
Q Consensus 208 VPII-Kf~d~~-----tgI~~DISfnn 228 (246)
.=.| ++.... .++.|||-+-.
T Consensus 235 ~~~v~~l~~~~~~~~~~~~rVDl~~vp 261 (335)
T 2fmp_A 235 FMGVCQLPSKNDEKEYPHRRIDIRLIP 261 (335)
T ss_dssp EEEEECCCCCTTCCCCCCEEEEEEECC
T ss_pred EEEEEEeCCcccccCCCceEEEEEEEC
Confidence 4333 221111 28999998875
No 20
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=93.91 E-value=0.19 Score=45.87 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEe----c-CC
Q 046567 132 NTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVI----A-KA 206 (246)
Q Consensus 132 ~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I----~-~A 206 (246)
..+.+.|.+.++.+-|.+++.+=||+.-|.-+ ..|||++|..+........|..+...|.+.+++..+... . ..
T Consensus 153 ~~ia~~i~~~l~~~~~~~~v~i~GS~RRgket-~gDiDilit~~~~~~~~~ll~~v~~~l~~~~~i~~~l~~~~~~g~~~ 231 (335)
T 2bcq_A 153 TEIEQTVQKAAQAFNSGLLCVACGSYRRGKAT-CGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQ 231 (335)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESSEEEEEECTTSSTTTTCHHHHHHHHHHTTCEEEEEECCTTSTTCC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCC-CCCeEEEEecCCchhhhhHHHHHHHHHHhCCchHHHhhccccCCCCc
Confidence 34556677777777889999999999999885 679999999875443344677888889888887654333 1 11
Q ss_pred Cc-eeEEEEE-cCCCeEEEEEeec
Q 046567 207 RV-PIVKFVE-KKSGVSFDIRHFM 228 (246)
Q Consensus 207 RV-PIIKf~d-~~tgI~~DISfnn 228 (246)
++ -|.++.. ...++.|||-+-.
T Consensus 232 k~~~v~~l~~~~~~~~rVDl~~vp 255 (335)
T 2bcq_A 232 KYLGVCRLPGPGRRHRRLDIIVVP 255 (335)
T ss_dssp EEEEEECCSSTTCCCEEEEEEECC
T ss_pred eEEEEEEccCCCCCceEEEEEEEC
Confidence 22 1212210 0278999998875
No 21
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A*
Probab=93.08 E-value=0.1 Score=46.90 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhCCC-ceEEEecccccCCCCCCCCceEEEecCC
Q 046567 122 SPTSDEREVRNTAVEAVFDVIKYIWPK-CKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 122 ~Pt~eE~~~R~~ii~~l~~vv~~~~P~-~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
-|.--..+..+.+++.|.+++++- ++ ..|.++||+++|-.-..||+|++++...
T Consensus 15 ~~~~~~m~~~~e~l~~I~~~~~~d-~~i~av~l~GS~~~~~~D~~SD~Di~~vV~~ 69 (287)
T 3jz0_A 15 VPRGSHMLKQKELIANVKNLTESD-ERITACMMYGSFTKGEGDQYSDIEFYIFLKH 69 (287)
T ss_dssp -------CHHHHHHHHHHHHHHHC-TTEEEEEECSGGGTTCCCTTCCEEEEEEECG
T ss_pred CCCCCCccCHHHHHHHHHHHHhcC-CCEEEEEEECCccCCCCCCccceeEEEEEcC
Confidence 344444566678888888888763 44 4588999999999888999999998753
No 22
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=88.61 E-value=0.69 Score=42.50 Aligned_cols=66 Identities=17% Similarity=0.255 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcc
Q 046567 132 NTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAK 198 (246)
Q Consensus 132 ~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~ 198 (246)
..+.+.|.+.++.+-|.+++.+=||+.-|.-+ ..|||++|..+........|..+...|.+.+++.
T Consensus 160 ~~i~~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~ll~~v~~~L~~~~~i~ 225 (360)
T 2ihm_A 160 EALQQLIEAAVRQTLPGATVTLTGGFRRGKLQ-GHDVDFLITHPEEGQEVGLLPKVMSCLQSQGLVL 225 (360)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEECHHHHTTCSE-ESEEEEEEECSSTTTTTTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCc-cCCeEEEEecCChhhhhhHHHHHHHHHHhCCCee
Confidence 34556666777777899999999999999885 6799999998754433457788888898888765
No 23
>2pbe_A AAD6, aminoglycoside 6-adenylyltransferase; NYSGXRC, aminoglycoside 6-adenyltransferase, PSI-2, structural genomics; 2.65A {Bacillus subtilis} SCOP: a.160.1.5 d.218.1.13
Probab=84.78 E-value=3.1 Score=36.96 Aligned_cols=43 Identities=12% Similarity=-0.008 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhCCC-ceEEEecccccCC--CCCCCCceEEEecCC
Q 046567 133 TAVEAVFDVIKYIWPK-CKPEVFGSFRTGL--YLPTSDIDVVIMESG 176 (246)
Q Consensus 133 ~ii~~l~~vv~~~~P~-~~V~~FGS~~tGL--~lp~SDIDl~I~~~~ 176 (246)
.+++.|.++.+.- +. .-|.+-||++++- .-..||+||++++..
T Consensus 8 em~~~i~~~a~~d-~rI~Av~l~GSr~n~~~~~D~fSDyDi~~vv~d 53 (294)
T 2pbe_A 8 EMMDIFLDFALND-ERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTD 53 (294)
T ss_dssp HHHHHHHHHHHHC-TTEEEEEEC------------CCCEEEEEEESC
T ss_pred HHHHHHHHHHcCC-cCEEEEEEecCCCCCCCCCCCcccceEEEEEcC
Confidence 5677777777752 33 3477889999966 677899999999864
No 24
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=84.22 E-value=2.3 Score=39.33 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCCh--hHHHHHHHHHHHhCCCcc
Q 046567 132 NTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNP--ATGLQALSRALLQRGIAK 198 (246)
Q Consensus 132 ~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~--~~~L~~L~~~L~~~~~~~ 198 (246)
..+.+.|.+.++.+-|.+++.+=||+.-|.-+ ..|||++|..+..... ...|..+...|.+.+++.
T Consensus 180 ~~ia~~i~~~l~~~~~~~~v~i~GSyRRgket-~gDvDilit~~~~~~~~~~~ll~~vv~~L~~~~~i~ 247 (381)
T 1jms_A 180 EAVSMLVKEAVVTFLPDALVTMTGGFRRGKMT-GHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLL 247 (381)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECHHHHTTCSC-BSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEccccccCCCC-cCCeEEEEeCCCccccchhhHHHHHHHHHHhCCCcc
Confidence 34556666677777899999999999999885 6799999998764321 226778888888887763
No 25
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A*
Probab=76.18 E-value=3.1 Score=34.52 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=49.8
Q ss_pred CCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHh--CCCcc-eEEEecCCCceeEEEEEcCCCeEE
Q 046567 146 WPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQ--RGIAK-KIQVIAKARVPIVKFVEKKSGVSF 222 (246)
Q Consensus 146 ~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~--~~~~~-~V~~I~~ARVPIIKf~d~~tgI~~ 222 (246)
+|++++.+=||+.-|.-+ ..|||++|..+. + ..+...|.+ .+.+. ++..-...|+=+ ++.....++.|
T Consensus 29 ~~g~~v~iaGS~RRgket-~gDiDiLit~~~---~----~~v~~~L~~~~~~~v~~~~l~~g~~k~~~-~l~~~~~~~rV 99 (174)
T 1jaj_A 29 ILSKNIVAVGSLRREEKM-LNDVDLLIIVPE---K----KLLKHVLPNIRIKGLSFSVKVCGERKCVL-FIEWEKKTYQL 99 (174)
T ss_dssp ECTTTEEEEEHHHHTCSE-ECCEEEEEEESS---H----HHHHTSSSEEEESSCEEEEEEETTTEEEE-EEESSSCCEEE
T ss_pred CCCcEEEEeccccCCCCC-CCCEEEEEecCC---H----HHHHHHHHhccCCceeHhHeecCCCeEEE-EeCCCCCceEE
Confidence 478999999999999884 569999998764 2 344555666 66655 544333444332 33211278999
Q ss_pred EEEeec
Q 046567 223 DIRHFM 228 (246)
Q Consensus 223 DISfnn 228 (246)
||-+-.
T Consensus 100 Dl~~vp 105 (174)
T 1jaj_A 100 DLFTAL 105 (174)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 998875
No 26
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=75.76 E-value=13 Score=35.70 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHH
Q 046567 108 LQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQAL 187 (246)
Q Consensus 108 ~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L 187 (246)
.++-.+|..+-++..+-+- .--..+.+.|.+.++.+-|.+++.+=||+.-|.-+ ..|||++|..+. +. .+
T Consensus 142 ~~i~~~l~~~~~~~~r~~~--~e~~~~~~~i~~~l~~~~~~~~~~~~Gs~RRgke~-~gDiD~li~~~~---~~----~v 211 (575)
T 3b0x_A 142 ERIREGLALAQAAGKRRPL--GAVLSLARSLLEAIRALPGVERAELCGSARRYKDT-VGDLDFLVASRE---GE----RA 211 (575)
T ss_dssp HHHHHHHHHHHHHTCCEEH--HHHHHHHHHHHHHHHTSTTCCEEEECHHHHTTCSE-ESSEEEEEECSS---HH----HH
T ss_pred HHHHHHHHHHHHhccceeH--HHHHHHHHHHHHHHHhCCCCcEEEEccccccCCCc-cCCeEEEEeCCC---HH----HH
Confidence 3444456555555433221 11234455666666666678999999999999874 569999998764 22 34
Q ss_pred HHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeec
Q 046567 188 SRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFM 228 (246)
Q Consensus 188 ~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn 228 (246)
...|.+.+.+..+..-...++-+ ++ ..|+.|||-+-.
T Consensus 212 ~~~l~~~~~~~~~~~~g~~k~~~-~~---~~~~rvDl~~~~ 248 (575)
T 3b0x_A 212 VEGFVRLPQVKEVYAKGKERATV-FL---KNGLQVDLRVVP 248 (575)
T ss_dssp HHHHHTSTTEEEEEEECSSEEEE-EE---TTSCEEEEEEEC
T ss_pred HHHHHhCcchhhHhhcCCCceEE-Ec---cCCcEEEEEEEC
Confidence 55666666655443333334332 22 378999999875
No 27
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=73.21 E-value=24 Score=28.68 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhC-CCceEEEeccccc---CCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCC
Q 046567 131 RNTAVEAVFDVIKYIW-PKCKPEVFGSFRT---GLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRG 195 (246)
Q Consensus 131 R~~ii~~l~~vv~~~~-P~~~V~~FGS~~t---GL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~ 195 (246)
|+.+.+.++.+.+.+- -++.-.+-||++. |...+.-||||++.. ....++.++|...+
T Consensus 15 ~~~~~~~L~~i~~~L~~~~V~~~l~Gs~Al~~~G~~~~~~DIDi~i~~-------~da~~~~~~L~~~g 76 (169)
T 2fcl_A 15 RPEYLRVLRXIYDRLXNEXVNWVVTGSLSFALQGVPVEVHDIDIQTDE-------EGAYEIERIFSEFV 76 (169)
T ss_dssp CHHHHHHHHHHHHHHTTSSCCEEEEHHHHHHHTTCCCCCCSEEEEECH-------HHHHHHHHHTGGGE
T ss_pred cHHHHHHHHHHHHHHHhcCCCEEEeHHHHHHHcCCCCCCCccEEEecc-------cCHHHHHHHHHHHh
Confidence 4445555555555442 2678889999965 888899999999922 33567777786644
No 28
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=66.04 E-value=24 Score=32.81 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=57.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhh--C---------C--------------------------C----ceEE
Q 046567 114 IVDFCDFLSPTSDEREVRNTAVEAVFDVIKYI--W---------P--------------------------K----CKPE 152 (246)
Q Consensus 114 I~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~--~---------P--------------------------~----~~V~ 152 (246)
++.=.+.|-|+++|.++-+.++.+++..++.. | . . +-|.
T Consensus 16 vmaKH~~IyP~~eel~avq~~Vs~~EraLK~VSD~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~L~GVM 95 (383)
T 4at7_B 16 VMAKHSSVYPTQEELEAVQNMVSHTERALKAVSDWIDEQEKGNSELSEAENMDTPPDDESKEGAGEQKAEHMTRTLRGVM 95 (383)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------CCEEEEE
T ss_pred hhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccCccccccccccCCccccccccccccccCCccceeeeee
Confidence 45556778899999999999998888888742 1 0 0 1255
Q ss_pred EecccccCCCCC-CCCceEEEecCCCCChhHHHHHHHHHHH
Q 046567 153 VFGSFRTGLYLP-TSDIDVVIMESGIHNPATGLQALSRALL 192 (246)
Q Consensus 153 ~FGS~~tGL~lp-~SDIDl~I~~~~~~~~~~~L~~L~~~L~ 192 (246)
-.|+++.|+.+. +-++||||++...+. ...|.++++.|.
T Consensus 96 RVG~laKGlLLkGd~~veLVvlck~kPT-~~ll~~va~~L~ 135 (383)
T 4at7_B 96 RVGLVAKGLLLKGDLDLELVLLCKEKPT-TALLDKVADNLA 135 (383)
T ss_dssp ECHHHHHTCCCTTCCEEEEEEEESSCCB-HHHHHHHHHHHH
T ss_pred EeceecccceECCCCceeEEEEeCCCCc-HHHHHHHHHHHH
Confidence 579999999997 589999999876554 456677776664
No 29
>1v4a_A Glutamate-ammonia-ligase adenylyltransferase; main alpha helix, DNA polymerase beta motif; 2.00A {Escherichia coli} SCOP: a.24.16.4 d.218.1.9
Probab=53.01 E-value=39 Score=31.44 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=23.8
Q ss_pred ceEEEecccccCCCCCCCCceEEEecC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMES 175 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~ 175 (246)
..|..+||+.-+=-.+.||||++++.+
T Consensus 155 ~aviamGk~Gr~EL~~~SDiDli~l~~ 181 (440)
T 1v4a_A 155 LLILGMGKLGGGELNFSSDIDLIFAWP 181 (440)
T ss_dssp CEEEECHHHHTTCCCSSCCEEEEEEEC
T ss_pred EEEEEeccccccCcCCCCCcceEEEeC
Confidence 568889999999999999999888764
No 30
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase, translocation, single tranded RNA polymerase, RNA protein complex, processivity, heterodimer; HET: 3AT; 2.06A {Vaccinia virus WR} SCOP: e.69.1.1 PDB: 3er8_C* 3erc_C* 3owg_A 2ga9_D* 2gaf_D
Probab=45.81 E-value=22 Score=33.53 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHHHHhCCCHHHHHHH-------HHHHHHHHHHHHhhCCCceEEEecccccCCCCC---CCCceEEEe
Q 046567 105 SPMLQLHKEIVDFCDFLSPTSDEREVR-------NTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLP---TSDIDVVIM 173 (246)
Q Consensus 105 ~~~~~L~~EI~~f~~~l~Pt~eE~~~R-------~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp---~SDIDl~I~ 173 (246)
..+..+..++++-+.-..|++.....| ..+-+.++..+++. +-.+.+|||+..-+--| ..|||++=.
T Consensus 132 ~s~~~la~~iL~synv~~~~~~~vmgRh~VSdLV~~V~klmeEyLrrh--Nk~CicYGSySlhlLNp~I~YgDIDilqT 208 (479)
T 3er9_B 132 TSMEELARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRH--NKSCICYGSYSLYLINPNIRYGDIDILQT 208 (479)
T ss_dssp GGGHHHHHHHHHHHCCCC-----------CCTTHHHHHHHHHHHHHHC--TTTEEEESHHHHHTTCTTCCCCSCEEEES
T ss_pred HHHHHHHHHHHHhcccccCCcccccccccccHHHHHHHHHHHHHHHhc--CCCeEEeeceeeeecCCCcccCCcceeee
Confidence 478899999998776666765444444 34555666666663 45578999999877655 599998753
No 31
>3k7d_A Glutamate-ammonia-ligase adenylyltransferase; nucleotidyl transferase domain, ATP-binding, nucleotide-BIND nucleotidyltransferase; 2.40A {Escherichia coli}
Probab=40.43 E-value=67 Score=30.55 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=23.7
Q ss_pred ceEEEecccccCCCCCCCCceEEEecC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMES 175 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~ 175 (246)
.-|..+|++..+=-.+.||||++++.+
T Consensus 235 ~aviamGklGg~EL~~~SDiDlifv~~ 261 (498)
T 3k7d_A 235 FAVVGYGKLGGWELGYSSDLDLIFLHD 261 (498)
T ss_dssp EEEEEEHHHHTTCCCTTCCEEEEEEEC
T ss_pred EEEEeeccccccccCcccccceeeeec
Confidence 568889999999999999999998764
No 32
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=29.14 E-value=34 Score=30.56 Aligned_cols=29 Identities=7% Similarity=-0.098 Sum_probs=24.7
Q ss_pred ceEEEecccccCCCCCCCCceEEEecCCC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMESGI 177 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~~~ 177 (246)
+-+..|||..+|=-+-+||+||.|+..+.
T Consensus 21 gvi~i~~~~~~~~l~d~fDi~LlVI~~~~ 49 (290)
T 3c18_A 21 GIIAVEKRQPRDSLTDQFDVLLLVITRDP 49 (290)
T ss_dssp EEEEEECSSTTCGGGTTSSEEEEEEECCT
T ss_pred EEEEEcCCCCCCCcccccceEEEEEecCC
Confidence 55666999999999999999999987543
No 33
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=28.41 E-value=1.2e+02 Score=21.69 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCC--hhHHHHHHHHHHHh
Q 046567 135 VEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHN--PATGLQALSRALLQ 193 (246)
Q Consensus 135 i~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~--~~~~L~~L~~~L~~ 193 (246)
.+.|++.|+.-++...|.+.|- -+|+.++.|+.+.+.. .-...+.+...|..
T Consensus 7 ~~~I~~~L~~~l~~~~l~V~~g-------~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~~ 60 (82)
T 3tr3_A 7 THDIKQWIETGLSESRVISAEG-------DGHHFEAVVLCPTFEGQTALTRHRLVYNALGS 60 (82)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEE-------CSSEEEEEEECGGGTTCCHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHhhCCCcEEEEEcC-------CCCeEEEEEEchhhCCCCHHHHHHHHHHHHHH
Confidence 3667888888888888888851 2689999999876543 22334555666654
No 34
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=27.45 E-value=1.6e+02 Score=24.45 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=41.7
Q ss_pred EEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeec-chHHHHHHHHHhccCCCC
Q 046567 170 VVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFM-DICRVIRMVCHTWGLVGD 246 (246)
Q Consensus 170 l~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn-~g~~~~r~~~~~~~~~~~ 246 (246)
+.+++.++.+..-...++-++|.+.++ +|+.|. .+.+++=+-++. +.-+++|-+-+.|+|-++
T Consensus 118 VSvVG~GM~~~~GVaak~F~aLa~~~I--NI~mIs------------tSEi~IS~vV~~~d~~~Av~aLH~~F~L~~~ 181 (200)
T 4go7_X 118 VSLIGAGMRSHPGVTATFCEALAAVGV--NIELIS------------TSEIRISVLCRDTELDKAVVALHEAFGLGGD 181 (200)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHTTC--CCCEEE------------ECSSEEEEEEEGGGHHHHHHHHHHHHTC---
T ss_pred eeeeccccccCCCcHHHHHHHHHHCCC--CEEEEE------------ccCCEEEEEEeHHHHHHHHHHHHHHhCCCCC
Confidence 446677777655556777788888776 677772 244444444454 788999999999999653
No 35
>4e8j_A Lincosamide resistance protein; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: MSE LN0; 1.82A {Staphylococcus haemolyticus} PDB: 4e8i_A* 4fo1_A*
Probab=26.10 E-value=1.9e+02 Score=23.40 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCceEEEeccccc----C-CCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeE
Q 046567 137 AVFDVIKYIWPKCKPEVFGSFRT----G-LYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIV 211 (246)
Q Consensus 137 ~l~~vv~~~~P~~~V~~FGS~~t----G-L~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPII 211 (246)
.+-+++... +....+-|=++- | -..++.|||+.|.-. ....+.++|...++ .+.. .. +-.-+
T Consensus 13 evl~~l~~~--~v~~~i~GGwAvD~~~G~~tR~H~DiDi~v~~~-------d~~~l~~~L~~~Gf--~~~~-~~-~p~~~ 79 (161)
T 4e8j_A 13 YILDLFEHM--KVTYWLDGGWGVDVLTGKQQREHRDIDIDFDAQ-------HTQKVIQKLEDIGY--KIEV-HW-MPSRM 79 (161)
T ss_dssp HHHHHHHHH--TCCEEEEHHHHHHHHHTSCCSCCSEEEEEEEGG-------GHHHHHHHHHHTTC--EEEE-EE-TTTEE
T ss_pred HHHHHHHhC--CCcEEEEcHhhhhHhcCCCCCcCCCeEEeecHH-------hHHHHHHHHHHCCC--EEee-cC-CceeE
Confidence 333444443 677888887765 4 357799999999542 24677788988887 2221 11 22235
Q ss_pred EEEEcCCCeEEEEEe
Q 046567 212 KFVEKKSGVSFDIRH 226 (246)
Q Consensus 212 Kf~d~~tgI~~DISf 226 (246)
++.+...+. +||-.
T Consensus 80 ~l~~~~~~~-iDlh~ 93 (161)
T 4e8j_A 80 ELKHEEYGY-LDIHP 93 (161)
T ss_dssp EEEETTTEE-EEEEE
T ss_pred EEEcCCCCE-EEEEE
Confidence 555543333 88865
No 36
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=22.63 E-value=2.2e+02 Score=26.43 Aligned_cols=81 Identities=15% Similarity=0.142 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhCCCceEEEecccccC--CCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCcee
Q 046567 133 TAVEAVFDVIKYIWPKCKPEVFGSFRTG--LYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPI 210 (246)
Q Consensus 133 ~ii~~l~~vv~~~~P~~~V~~FGS~~tG--L~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPI 210 (246)
.+++.+..+.+.. +.+++..|-++-. |+.+..|+|+++... +. .+++.+.+.- ...++.+.+--.
T Consensus 21 ~~l~~l~~~~~~~--G~~aylVGG~VRD~LLg~~~~D~Di~t~~~----~~----~~~~~~~~~~---~~~~~~g~~~gt 87 (441)
T 3h38_A 21 NLFRLLGKFGDEV--NMPVYVVGGFVRDLLLGIKNLDIDIVVEGN----AL----EFAEYAKRFL---PGKLVKHDKFMT 87 (441)
T ss_dssp HHHHHHHHHHHHT--TCCEEEETHHHHHHHHTCCCCCEEEEESSC----HH----HHHHHHHTTS---CEEEECCSSTTE
T ss_pred HHHHHHHHHHHHc--CCeEEEEcHHHHHHHCCCCCCCeeEEeCCC----HH----HHHHHHHHHc---CCEeccCCcCcE
Confidence 3455555555543 7789999999876 456789999998652 32 3334443321 122333555555
Q ss_pred EEEEEcCCCeEEEEEee
Q 046567 211 VKFVEKKSGVSFDIRHF 227 (246)
Q Consensus 211 IKf~d~~tgI~~DISfn 227 (246)
+.++- ..|..+||+-.
T Consensus 88 ~~v~~-~~g~~~ev~t~ 103 (441)
T 3h38_A 88 ASLFL-KGGLRIDIATA 103 (441)
T ss_dssp EEEEE-TTSCEEEEEEC
T ss_pred EEEEE-eCCeEEEEecc
Confidence 55543 25777888743
Done!