Query 046567
Match_columns 246
No_of_seqs 145 out of 1255
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 23:42:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046567.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046567hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2q66a2 d.218.1.3 (A:5-201) Po 99.9 2E-24 1.5E-28 184.4 17.9 134 91-228 4-155 (197)
2 d1q79a2 d.218.1.3 (A:19-214) P 99.9 1.4E-23 1E-27 179.1 16.4 119 108-228 18-154 (196)
3 d1no5a_ d.218.1.5 (A:) Hypothe 99.1 1.8E-10 1.3E-14 86.8 9.6 79 130-209 4-82 (100)
4 d2b4va2 d.218.1.10 (A:30-288) 98.8 2.6E-08 1.9E-12 86.1 12.2 108 107-214 7-122 (259)
5 d1r89a2 d.218.1.7 (A:1-142) tR 98.7 1E-07 7.4E-12 76.1 13.6 109 110-225 3-112 (142)
6 d1ylqa1 d.218.1.5 (A:1-90) Put 98.6 3.1E-08 2.3E-12 73.4 6.6 58 135-192 1-59 (90)
7 d1wota_ d.218.1.5 (A:) Unnamed 98.0 1.1E-05 7.7E-10 59.8 8.1 55 137-193 15-69 (98)
8 d1knya2 d.218.1.1 (A:1-125) Ka 97.7 1.9E-05 1.4E-09 61.1 5.1 48 129-176 10-59 (125)
9 d1px5a2 d.218.1.6 (A:1-200) 2' 97.5 0.00078 5.7E-08 55.9 12.4 112 114-225 11-149 (200)
10 d2bcqa3 d.218.1.2 (A:386-575) 96.4 0.016 1.2E-06 46.7 11.4 96 133-229 9-111 (190)
11 d1jmsa4 d.218.1.2 (A:303-510) 96.1 0.058 4.2E-06 43.8 13.2 66 132-198 7-74 (208)
12 d2fmpa3 d.218.1.2 (A:149-335) 95.1 0.092 6.7E-06 41.9 10.8 96 133-229 9-114 (187)
13 d2pbea2 d.218.1.13 (A:1-135) A 90.8 0.12 9E-06 39.5 4.5 93 132-228 5-106 (135)
14 d2fcla1 d.218.1.11 (A:1-157) H 77.8 6.8 0.00049 29.0 9.1 54 134-196 9-65 (157)
15 d1jqra_ d.218.1.2 (A:) DNA pol 62.3 7.8 0.00057 29.8 6.2 75 149-229 32-106 (174)
16 d2ga9d1 e.69.1.1 (D:12-479) Po 30.9 23 0.0017 31.2 4.5 67 105-173 121-197 (468)
17 d1v4aa2 d.218.1.9 (A:2-286) Gl 27.3 89 0.0065 25.3 7.6 27 149-175 154-180 (285)
18 d2fwra1 c.37.1.19 (A:257-456) 22.8 98 0.0072 22.6 6.6 57 129-194 125-183 (200)
19 d1gnwa2 c.47.1.5 (A:2-85) Clas 22.0 59 0.0043 20.9 4.5 33 204-245 49-81 (84)
20 d2nrka1 d.218.1.14 (A:4-170) H 20.2 99 0.0072 22.8 6.0 56 136-196 14-72 (167)
No 1
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.92 E-value=2e-24 Score=184.43 Aligned_cols=134 Identities=19% Similarity=0.183 Sum_probs=113.8
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhh----------------CCCceEE
Q 046567 91 RMENRWFKGNSRFKSPMLQLHKEIVDFCDF--LSPTSDEREVRNTAVEAVFDVIKYI----------------WPKCKPE 152 (246)
Q Consensus 91 ~~~~pW~~~~~~~~~~~~~L~~EI~~f~~~--l~Pt~eE~~~R~~ii~~l~~vv~~~----------------~P~~~V~ 152 (246)
|..+||--..+. ..-..++.+|..++.. +-|+++|.+.|+.++++|+++++++ +++++|+
T Consensus 4 Gvt~Pis~~~Pt--~~d~~~s~~L~~~L~~~~~~~s~ee~~~R~~vl~~l~~iv~~~v~~~~~~~~~~~~~~~~~~~~v~ 81 (197)
T d2q66a2 4 GITGPVSTVGAT--AAENKLNDSLIQELKKEGSFETEQETANRVQVLKILQELAQRFVYEVSKKKNMSDGMARDAGGKIF 81 (197)
T ss_dssp SSSCCSCCCCCC--HHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHTBCEEE
T ss_pred cCCCCcccCCCC--hHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCCcEEE
Confidence 445555444432 3345777888887765 5599999999999999999999874 4679999
Q ss_pred EecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeec
Q 046567 153 VFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFM 228 (246)
Q Consensus 153 ~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn 228 (246)
+|||+.+|+++|+||||+|++.+...++..++..++..|++...+++++.|.+|+||||||+. +||+|||||+.
T Consensus 82 ~fGS~~lg~~~p~SDID~~~~~p~~~~~~~ff~~l~~~L~~~~~v~~i~~I~~A~VPIIK~~~--~gi~iDlsfa~ 155 (197)
T d2q66a2 82 TYGSYRLGVHGPGSDIDTLVVVPKHVTREDFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKF--SGISIALICAR 155 (197)
T ss_dssp EEHHHHHTCCCTTCCEEEEEEECTTCCHHHHHHHHHHHHHTCTTEEEEEEECSSSSCEEEEEE--TTEEEEEEEEE
T ss_pred ecccccccccCCCCCcceEEecCCcCCHHHHHHHHHHHHHhCCCCceeEEeecccccEEEEEE--cCEEEEeeccc
Confidence 999999999999999999999987777788899999999998888999999999999999974 89999999984
No 2
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.90 E-value=1.4e-23 Score=179.07 Aligned_cols=119 Identities=19% Similarity=0.232 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHhh----------------CCCceEEEecccccCCCCCCCCce
Q 046567 108 LQLHKEIVDFCDF--LSPTSDEREVRNTAVEAVFDVIKYI----------------WPKCKPEVFGSFRTGLYLPTSDID 169 (246)
Q Consensus 108 ~~L~~EI~~f~~~--l~Pt~eE~~~R~~ii~~l~~vv~~~----------------~P~~~V~~FGS~~tGL~lp~SDID 169 (246)
..++++|..+++. +-|+++|...|+.++.+|+++++++ +++++|++|||+.+|+++|+||||
T Consensus 18 ~~~s~~L~~~L~~~~~~ps~ee~~~R~~vl~~L~~lv~~~~~~~~~~~~~~~~~~~~~~~~v~~FGS~~lgv~~p~SDID 97 (196)
T d1q79a2 18 CLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADID 97 (196)
T ss_dssp HHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEEEEHHHHHTCCCTTCCEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhccCCcEEEEeccccccccCCCCCcc
Confidence 3445555555532 3499999999999999999999974 457899999999999999999999
Q ss_pred EEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeec
Q 046567 170 VVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFM 228 (246)
Q Consensus 170 l~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn 228 (246)
++++.+...++..++..++..|++.+.++++++|..||||||||+. +||+|||||+.
T Consensus 98 ~~~i~p~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~A~VPiiK~~~--~gi~iDlsfa~ 154 (196)
T d1q79a2 98 ALCVAPRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCF--DGIEIDILFAR 154 (196)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEE--TTEEEEEEEEE
T ss_pred EEEecCCcCCHHHHHHHHHHHHhcCCCcceEEEeccccccEEEEEE--cCeeEeehhhh
Confidence 9999987767778889999999999999999999999999999975 79999999984
No 3
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]}
Probab=99.10 E-value=1.8e-10 Score=86.76 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCce
Q 046567 130 VRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVP 209 (246)
Q Consensus 130 ~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVP 209 (246)
.|...++.|++++++.+|.++|++|||++.|.+.++|||||+|......+ ...+..+...|.+.....+|.++..+++|
T Consensus 4 i~~e~l~~i~~il~~~~~~~~v~LFGS~arg~~~~~SDiDl~I~~~~~~~-~~~~~~l~~~l~~~~~~~~VDlv~~~~~~ 82 (100)
T d1no5a_ 4 IKSEELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLD-FLARDRLKEAFSESDLPWRVDLLDWATTS 82 (100)
T ss_dssp SCHHHHHHHHHHHHHHCTTSEEEEEGGGTTTCCCTTCCEEEEEECSSCCC-HHHHHHHHHHHHHSCCSSCEEEEEGGGSC
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcCCCCCceEEEEeCCCCC-HHHHHHHHHHHHhcCCCCcEEEEEhhhCC
Confidence 46778899999999999999999999999999999999999998754323 33456777778766555677777666665
No 4
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]}
Probab=98.78 E-value=2.6e-08 Score=86.14 Aligned_cols=108 Identities=18% Similarity=0.069 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEeccccc-CCCCCCCCceEEEecCCCCChhHHHH
Q 046567 107 MLQLHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRT-GLYLPTSDIDVVIMESGIHNPATGLQ 185 (246)
Q Consensus 107 ~~~L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~t-GL~lp~SDIDl~I~~~~~~~~~~~L~ 185 (246)
+.+.++-|...-...---++-.+.-..+-++|+.+|++..++++|++|||+++ |+|--.||+|+.+.....-.|.+...
T Consensus 7 ~~~wGk~v~~~a~~~d~ge~~F~~~~RAr~QLe~lv~~~~~da~Vf~FGs~Vs~G~wdg~gD~DF~v~dve~~pp~e~~a 86 (259)
T d2b4va2 7 YAVWGKAIMAENNRRVGPEHMFRTAIRAQQQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDDPYPSHEVQA 86 (259)
T ss_dssp HHHHHHHHHHHHHHHBCCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhCCCeeEEEccceeEEeeeccccccceeeeecCCCCcccchh
Confidence 44456666555444433344455556788999999999999999999999965 99999999999887654323444344
Q ss_pred HHHHHHHhCCC-------cceEEEecCCCceeEEEE
Q 046567 186 ALSRALLQRGI-------AKKIQVIAKARVPIVKFV 214 (246)
Q Consensus 186 ~L~~~L~~~~~-------~~~V~~I~~ARVPIIKf~ 214 (246)
...+.|++.+. -.+.+.|.+|||||||..
T Consensus 87 v~te~lRr~g~~~~~~~l~s~lep~~~aRVPviK~~ 122 (259)
T d2b4va2 87 KRTDKLRTVIKRYVPHYLRNNLLGLTEARTPVVKLR 122 (259)
T ss_dssp HHHHHHHHHHHTTSCHHHHTTEEEECSSSSCEEEEC
T ss_pred hhHHHHHHhhhhhccccccccccccccccceeEeee
Confidence 44556665331 247899999999999974
No 5
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.74 E-value=1e-07 Score=76.10 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhhCCCceEEEecccccCCCCCC-CCceEEEecCCCCChhHHHHHHH
Q 046567 110 LHKEIVDFCDFLSPTSDEREVRNTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPT-SDIDVVIMESGIHNPATGLQALS 188 (246)
Q Consensus 110 L~~EI~~f~~~l~Pt~eE~~~R~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~-SDIDl~I~~~~~~~~~~~L~~L~ 188 (246)
+.+-+..+.+.+.|+++|+..-..+.+.|+..|+.. ++.+..+||++-|+++++ +|||+.+..+....+......+.
T Consensus 3 ~~~il~~vl~~I~Pt~ee~~~~~~~~~~l~~~l~~~--~~e~~~~GS~ar~T~l~~~~DiDifv~~~~~~~~e~l~~~~~ 80 (142)
T d1r89a2 3 VEEILEKALELVIPDEEEVRKGREAEEELRRRLDEL--GVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGL 80 (142)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH--TCCEEEEHHHHHTCCCTTCCEEEEEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhc--CccEEEeccccccccCCCccceeEEEEeCCCCCHHHHHHHHH
Confidence 345567888999999999998889999999999887 478999999999999995 99999999875444333333333
Q ss_pred HHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEE
Q 046567 189 RALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIR 225 (246)
Q Consensus 189 ~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DIS 225 (246)
+.++... .+.... .|.=|-|++. ..|+.+||-
T Consensus 81 ~~~~~~~--~~~~~~-y~~hpyv~~~--~~g~~vDvV 112 (142)
T d1r89a2 81 EIGKAVL--DSYEIR-YAEHPYVHGV--VKGVEVDVV 112 (142)
T ss_dssp HHHHHHS--SSEEEE-ESSSEEEEEE--ETTEEEEEE
T ss_pred HHHHHhh--ccceEe-eccCCEEEEE--ECCeEEEEE
Confidence 4443321 223343 5555888885 489999995
No 6
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.61 E-value=3.1e-08 Score=73.38 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhCCCceEEEecccccCCCCC-CCCceEEEecCCCCChhHHHHHHHHHHH
Q 046567 135 VEAVFDVIKYIWPKCKPEVFGSFRTGLYLP-TSDIDVVIMESGIHNPATGLQALSRALL 192 (246)
Q Consensus 135 i~~l~~vv~~~~P~~~V~~FGS~~tGL~lp-~SDIDl~I~~~~~~~~~~~L~~L~~~L~ 192 (246)
++.|..++++..+.++|++|||++.|-+.+ +|||||+|+.....++......+.+.++
T Consensus 1 l~~i~e~ik~~~~~~kViLFGS~ArG~~~~~~SDiDllVV~~~~~~~~~r~~~~~~~~~ 59 (90)
T d1ylqa1 1 MKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDVFEDRNRKLEFFGKITK 59 (90)
T ss_dssp HHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGGGGSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCcEEEEECccccCCCCCCCCccEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 467888899999999999999999999997 7999999988654443333333333343
No 7
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=97.99 E-value=1.1e-05 Score=59.85 Aligned_cols=55 Identities=24% Similarity=0.203 Sum_probs=38.4
Q ss_pred HHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHh
Q 046567 137 AVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQ 193 (246)
Q Consensus 137 ~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~ 193 (246)
.+..+++++ +-.++++|||+++|-+.+.|||||+|....... ...+..+...|.+
T Consensus 15 ~i~~i~~k~-~v~~v~lFGS~arg~~~~~SDIDi~V~~~~~~~-~~~~~~l~~~le~ 69 (98)
T d1wota_ 15 AVLSLCARH-GAVRVRVFGSVARGEAREDSDLDLLVAFEEGRT-LLDHARLKLALEG 69 (98)
T ss_dssp HHHHHHHHH-TCSSCEECSHHHHTCCCTTCCCEEEECCCSSCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCcEEEEECCccCCCCCCCCCceEEEEeCCCCC-HHHHHHHHHHHHH
Confidence 344455553 567899999999999999999999998754222 2234455555554
No 8
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=97.69 E-value=1.9e-05 Score=61.08 Aligned_cols=48 Identities=25% Similarity=0.223 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhCCC--ceEEEecccccCCCCCCCCceEEEecCC
Q 046567 129 EVRNTAVEAVFDVIKYIWPK--CKPEVFGSFRTGLYLPTSDIDVVIMESG 176 (246)
Q Consensus 129 ~~R~~ii~~l~~vv~~~~P~--~~V~~FGS~~tGL~lp~SDIDl~I~~~~ 176 (246)
+.|..+++.+.+.|.+.+++ ..|.+|||++.|-+.|+|||||.|+...
T Consensus 10 ~e~~~~~~~~~~~i~~~~~~~v~~i~L~GS~arg~~~~~SDiDl~vv~~~ 59 (125)
T d1knya2 10 EERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMST 59 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEEEEEEHHHHHTCCCTTCCEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHhCcceEEEEEECccccCCCCCCCCeEEEEEECC
Confidence 34566777777777777765 3689999999999999999999888654
No 9
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=97.46 E-value=0.00078 Score=55.86 Aligned_cols=112 Identities=22% Similarity=0.272 Sum_probs=65.8
Q ss_pred HHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHh-hCC----C---ceEEEecccccCCCCCC-CCceEEEecCCCCC----
Q 046567 114 IVDFC-DFLSPTSDEREVRNTAVEAVFDVIKY-IWP----K---CKPEVFGSFRTGLYLPT-SDIDVVIMESGIHN---- 179 (246)
Q Consensus 114 I~~f~-~~l~Pt~eE~~~R~~ii~~l~~vv~~-~~P----~---~~V~~FGS~~tGL~lp~-SDIDl~I~~~~~~~---- 179 (246)
+..|+ ++|+|+.+=+..-..+++.|...+++ ++. . .+|.-=||+..|+.|++ ||+|||++.+++..
T Consensus 11 Ld~fI~~~Lqp~~~f~~~~~~avd~i~~fLke~cf~~~~~~v~V~kVvKGGS~gkGTaLr~~SDvDlVvFls~l~sf~dq 90 (200)
T d1px5a2 11 LDKFIEDHLLPNTCFRTQVKEAIDIVCRFLKERCFQGTADPVRVSKVVKGGSSGKGTTLRGRSDADLVVFLTKLTSFEDQ 90 (200)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEEEEEC--------CEEEEEEEEEESCSCTTHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEeccccCCCcccCCCCcceEEEEecCCCchHHH
Confidence 44555 67899988888888999999999986 443 2 35666799999999995 99999999876542
Q ss_pred ---hhHHHHHHHHHHHh----CCCcceEEEe-cCCCce---eEEEEEcC--CCeEEEEE
Q 046567 180 ---PATGLQALSRALLQ----RGIAKKIQVI-AKARVP---IVKFVEKK--SGVSFDIR 225 (246)
Q Consensus 180 ---~~~~L~~L~~~L~~----~~~~~~V~~I-~~ARVP---IIKf~d~~--tgI~~DIS 225 (246)
....|..+.+.|.. ..+--..++. .+-++| ..++..+. .+|.+||-
T Consensus 91 ~~~~~e~i~ei~~~L~~~~~~~~~~~~~e~~~~~~~~pral~F~l~~~~~~~~v~vDvL 149 (200)
T d1px5a2 91 LRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRRENPRALSFVLSSPQLQQEVEFDVL 149 (200)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHCCCSSEEEECCC------CCEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCceEEEeecCccCCcEEEEEEEEcCCCCcEEEEee
Confidence 12456666666542 3332244443 122334 44554443 45889997
No 10
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.41 E-value=0.016 Score=46.73 Aligned_cols=96 Identities=18% Similarity=0.121 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEE
Q 046567 133 TAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVK 212 (246)
Q Consensus 133 ~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIK 212 (246)
++.+.|+++++.+-|++++.+-||+..|-. -..|||++|..+........+..+-..|++.+++....+....+.--.|
T Consensus 9 ~i~~~l~~~~~~~~~~~~~~i~GSyRRgk~-~~gDIDili~~~~~~~~~~~l~~~~~~l~~~g~i~~~l~~~~~~~~~~~ 87 (190)
T d2bcqa3 9 EIEQTVQKAAQAFNSGLLCVACGSYRRGKA-TCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQK 87 (190)
T ss_dssp HHHHHHHHHHHTTCTTCEEEECHHHHTTCS-EESSEEEEEECTTSSTTTTCHHHHHHHHHHTTCEEEEEECCTTSTTCCE
T ss_pred HHHHHHHHHHHhCCCCcEEEEecccccCCc-ccCCeeEEEecCCchhHHHHHHHHHHHHHhcCceEEEEeeecccCCcce
Confidence 445566777788888999999999999965 5799999999876544445688888899988876544332222211122
Q ss_pred EE------E-cCCCeEEEEEeecc
Q 046567 213 FV------E-KKSGVSFDIRHFMD 229 (246)
Q Consensus 213 f~------d-~~tgI~~DISfnn~ 229 (246)
+. . ...+.+|||-+-..
T Consensus 88 ~~gi~~l~~~~~~~rrvDi~~~~~ 111 (190)
T d2bcqa3 88 YLGVCRLPGPGRRHRRLDIIVVPY 111 (190)
T ss_dssp EEEEECCSSTTCCCEEEEEEECCG
T ss_pred eEEEEecCCCCCcceeEEEEEcCH
Confidence 21 1 12578999998763
No 11
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.08 E-value=0.058 Score=43.84 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCC--hhHHHHHHHHHHHhCCCcc
Q 046567 132 NTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHN--PATGLQALSRALLQRGIAK 198 (246)
Q Consensus 132 ~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~--~~~~L~~L~~~L~~~~~~~ 198 (246)
+++.+.|++.++.+-|+++|.+-||+..|-. -..|||++|..++... ....+..+...|+..++..
T Consensus 7 ~~i~~~v~~~~~~~~~~~~v~i~GSyRRGk~-tsgDIDili~~~~~~~~~~~~~l~~~~~~l~~~g~i~ 74 (208)
T d1jmsa4 7 EAVSMLVKEAVVTFLPDALVTMTGGFRRGKM-TGHDVDFLITSPEATEDEEQQLLHKVTDFWKQQGLLL 74 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEECHHHHTTCS-CBSSEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEeeccccCCC-ccCCeeEEEecCCCchhhHHHHHHHHHHHHHhcCcee
Confidence 4556667778888899999999999999976 5799999998876432 2345778888888887654
No 12
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.13 E-value=0.092 Score=41.89 Aligned_cols=96 Identities=17% Similarity=0.247 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhCCCceEEEecccccCCCCCCCCceEEEecCCCCC----hhHHHHHHHHHHHhCCCcceEEEecCCCc
Q 046567 133 TAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLPTSDIDVVIMESGIHN----PATGLQALSRALLQRGIAKKIQVIAKARV 208 (246)
Q Consensus 133 ~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~----~~~~L~~L~~~L~~~~~~~~V~~I~~ARV 208 (246)
.+.+.|.+.++.+-|+++|.+-||+..|-. -..|||++|..+.... ....+..+...|.+.+.+..+......+.
T Consensus 9 ~i~~~i~~~~~~~~~~~~v~i~GSyRRgk~-~~gDIDilIt~~~~~~~~~~~~~~l~~v~~~l~~~~~i~~~l~~g~~k~ 87 (187)
T d2fmpa3 9 QMQDIVLNEVKKVDSEYIATVCGSFRRGAE-SSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKF 87 (187)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECHHHHTTCS-EESSEEEEEECTTBCSSCBCSSCHHHHHHHHHHHTTSEEEEEEECSSEE
T ss_pred HHHHHHHHHHHhCCCCcEEEEeeecccCCc-ccCCccEEEecCCccchhhhhhHHHHHHHHHHHHCCcchhhhhcCCceE
Confidence 344566677777789999999999999964 5799999998765321 12457778888888887654433333221
Q ss_pred -eeEEEEE-----cCCCeEEEEEeecc
Q 046567 209 -PIVKFVE-----KKSGVSFDIRHFMD 229 (246)
Q Consensus 209 -PIIKf~d-----~~tgI~~DISfnn~ 229 (246)
=++|+.. ...+.+|||-+-..
T Consensus 88 ~g~~~l~~~~~~~~~~~rrvDi~~~~~ 114 (187)
T d2fmpa3 88 MGVCQLPSKNDEKEYPHRRIDIRLIPK 114 (187)
T ss_dssp EEEECCCCCTTCCCCCCEEEEEEECCG
T ss_pred EEEEEecCcCccccCcceEEEEEEcCH
Confidence 1122211 12578999998863
No 13
>d2pbea2 d.218.1.13 (A:1-135) Aminoglycoside 6-adenylyltransferase AadK {Bacillus subtilis [TaxId: 1423]}
Probab=90.78 E-value=0.12 Score=39.54 Aligned_cols=93 Identities=10% Similarity=0.158 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhCCCce-EEEecccccCCCCCC--CCceEEEecCCCC---ChhHHHHHHHHHHHh-C--CCcceEEE
Q 046567 132 NTAVEAVFDVIKYIWPKCK-PEVFGSFRTGLYLPT--SDIDVVIMESGIH---NPATGLQALSRALLQ-R--GIAKKIQV 202 (246)
Q Consensus 132 ~~ii~~l~~vv~~~~P~~~-V~~FGS~~tGL~lp~--SDIDl~I~~~~~~---~~~~~L~~L~~~L~~-~--~~~~~V~~ 202 (246)
+.+++.|-++.++ -+..+ |.+-||+++|...++ ||+|++++..+.. .....+.++++.+-. . .+ .....
T Consensus 5 ~eml~~I~~~a~~-d~~I~Av~L~GSRan~~~~~D~fsD~Div~~v~d~~~f~~~~~Wl~~fG~~l~~q~pe~~-~~~~~ 82 (135)
T d2pbea2 5 QEMMDIFLDFALN-DERIRLVTLEGSRTNRNIPPDNFQDYDISYFVTDVESFKENDQWLEIFGKRIMMQKPEDM-ELFPP 82 (135)
T ss_dssp HHHHHHHHHHHHH-CTTEEEEEEC------------CCCEEEEEEESCHHHHHTCSGGGGGGCCEEEEECTTSC-SSSCC
T ss_pred HHHHHHHHHHHhc-CCCEEEEEEecccCCCCCCCCCCcceeEEEEecCchHhhhCHHHHHHhCchhheEccccc-cccCc
Confidence 4566666666665 35543 678899999999887 9999998876531 011223333332210 0 00 00011
Q ss_pred ecCCCceeEEEEEcCCCeEEEEEeec
Q 046567 203 IAKARVPIVKFVEKKSGVSFDIRHFM 228 (246)
Q Consensus 203 I~~ARVPIIKf~d~~tgI~~DISfnn 228 (246)
...++...+-.. ..|.++|+.+-.
T Consensus 83 ~~~~~~~~l~lf--eDG~rIDl~l~~ 106 (135)
T d2pbea2 83 ELGNWFSYIILF--EDGNKLDLTLIP 106 (135)
T ss_dssp CSTTCEEEEEEE--TTSCEEEEEEEE
T ss_pred ccCCceEEEEEe--cCCcEEEEEEeC
Confidence 224555554443 489999998865
No 14
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012 {Thermotoga maritima [TaxId: 2336]}
Probab=77.81 E-value=6.8 Score=29.05 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhCCCceEEEeccccc---CCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCC
Q 046567 134 AVEAVFDVIKYIWPKCKPEVFGSFRT---GLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGI 196 (246)
Q Consensus 134 ii~~l~~vv~~~~P~~~V~~FGS~~t---GL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~ 196 (246)
+++.+-+.+++. +..-.+.||++. |....+-|||++|.. ....++.+.|...+.
T Consensus 9 ~l~~~~~~l~~~--~i~~~i~Gg~A~~~~G~~r~t~DiDi~v~~-------~~~~~~~~~l~~~g~ 65 (157)
T d2fcla1 9 VLRKIYDRLKNE--KVNWVVTGSLSFALQGVPVEVHDIDIQTDE-------EGAYEIERIFSEFVS 65 (157)
T ss_dssp HHHHHHHHHTTS--SCCEEEEHHHHHHHTTCCCCCCSEEEEECH-------HHHHHHHHHTGGGEE
T ss_pred HHHHHHHHHHHC--CCCEEEEhHHHHHHCCCCCCCCceeEEEcc-------cCHHHHHHHHHHhCc
Confidence 455555555553 677888999865 666778999999832 235677777776543
No 15
>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]}
Probab=62.27 E-value=7.8 Score=29.76 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=47.9
Q ss_pred ceEEEecccccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCCcceEEEecCCCceeEEEEEcCCCeEEEEEeec
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGIAKKIQVIAKARVPIVKFVEKKSGVSFDIRHFM 228 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~~~~V~~I~~ARVPIIKf~d~~tgI~~DISfnn 228 (246)
-+|.+-||+.-|.- -..|||+++..+... .+..+-..|...+++.++......+. .+++.-...+.++||-+-.
T Consensus 32 ~~i~~aGSyRRgke-~~gDIDili~~~~~~----~~~~~l~~l~~~~~i~~~l~~g~~k~-~~~~~~~~~~rrvDi~~~~ 105 (174)
T d1jqra_ 32 KNIVAVGSLRREEK-MLNDVDLLIIVPEKK----LLKHVLPNIRIKGLSFSVKVCGERKC-VLFIEWEKKTYQLDLFTAL 105 (174)
T ss_dssp GGEEECHHHHTTCS-EESCEEEEEEECSST----THHHHTTTEEESSSEEEEEEECSSEE-EEEEEETTEEEEEEEEEEE
T ss_pred cCEEEeeccccCcc-ccCCeEEEEecCCHH----HHHHHHHHHHhCCceEEEeeccCcee-EEEEecCCCcEEEEEEEcC
Confidence 36899999999987 468999999886432 24455455666666544433322221 2233334568999999886
Q ss_pred c
Q 046567 229 D 229 (246)
Q Consensus 229 ~ 229 (246)
.
T Consensus 106 ~ 106 (174)
T d1jqra_ 106 A 106 (174)
T ss_dssp T
T ss_pred H
Confidence 4
No 16
>d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit, PAPL {Vaccinia virus [TaxId: 10245]}
Probab=30.86 E-value=23 Score=31.22 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHHHHhCCCHHHHHHH-------HHHHHHHHHHHHhhCCCceEEEecccccCCCCC---CCCceEEEe
Q 046567 105 SPMLQLHKEIVDFCDFLSPTSDEREVR-------NTAVEAVFDVIKYIWPKCKPEVFGSFRTGLYLP---TSDIDVVIM 173 (246)
Q Consensus 105 ~~~~~L~~EI~~f~~~l~Pt~eE~~~R-------~~ii~~l~~vv~~~~P~~~V~~FGS~~tGL~lp---~SDIDl~I~ 173 (246)
..+..+-.+++.-+..-.|+......| ..+.+.++..+++. +-.+.+|||+..-+--| ..|||++=.
T Consensus 121 ~s~~~ia~~~l~s~nV~~~~~~k~mgRhnvSdLV~~V~kLmeEyLrrh--Nk~CicYGSYSlhlLNp~IeYgDIDilQT 197 (468)
T d2ga9d1 121 TSMEELARDMLNSMNVAVIDKAKVMGRHNVSSLVKNVNKLMEEYLRRH--NKSCICYGSYSLYLINPNIRYGDIDILQT 197 (468)
T ss_dssp GGTHHHHHHHHHHHCCCC-----------CCTHHHHHHHHHHHHHHHC--TTTEEEESHHHHHTTCTTCCCSSCEEEES
T ss_pred hhHHHHHHHHHHHcCCccCCcccccCCCchHHHHHHHHHHHHHHHHhc--CCceEEEeeeeeeecCCCcccCCcceeee
Confidence 468888888888775544444333333 34556666666663 45578999998877655 599998753
No 17
>d1v4aa2 d.218.1.9 (A:2-286) Glutamine synthase adenylyltransferase GlnE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.30 E-value=89 Score=25.27 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=20.0
Q ss_pred ceEEEecccccCCCCCCCCceEEEecC
Q 046567 149 CKPEVFGSFRTGLYLPTSDIDVVIMES 175 (246)
Q Consensus 149 ~~V~~FGS~~tGL~lp~SDIDl~I~~~ 175 (246)
..|.-+|-...+=-.-+|||||+++.+
T Consensus 154 ~~VIamGKlGg~ELny~SDlDLIfvy~ 180 (285)
T d1v4aa2 154 LLILGMGKLGGGELNFSSDIDLIFAWP 180 (285)
T ss_dssp CEEEECHHHHTTCCCSSCCEEEEEEEC
T ss_pred eEEEecchhcccccccCCCcceEEEec
Confidence 356666777666666789999998764
No 18
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=22.82 E-value=98 Score=22.59 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEecc--cccCCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhC
Q 046567 129 EVRNTAVEAVFDVIKYIWPKCKPEVFGS--FRTGLYLPTSDIDVVIMESGIHNPATGLQALSRALLQR 194 (246)
Q Consensus 129 ~~R~~ii~~l~~vv~~~~P~~~V~~FGS--~~tGL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~ 194 (246)
..|+.+++.+++ .+++| ++.+ ...|+.+| +++.+|+.....++...+.++++.+|..
T Consensus 125 ~~R~~~l~~F~~------~~~~v-Lv~~~~~~~Gidl~--~~~~vi~~~~~~s~~~~~Q~iGR~~R~~ 183 (200)
T d2fwra1 125 EEREEILEGFRT------GRFRA-IVSSQVLDEGIDVP--DANVGVIMSGSGSAREYIQRLGRILRPS 183 (200)
T ss_dssp HHHHTHHHHHHH------SSCSB-CBCSSCCCSSSCSC--CBSEEEEECCSSCCHHHHHHHHHSBCCC
T ss_pred HHHHHHHHHhhc------CCeee-eeecchhhcccCCC--CCCEEEEeCCCCCHHHHHHHHHhcCCCC
Confidence 346666666642 23333 2333 34566666 4666776654456778888888887753
No 19
>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.97 E-value=59 Score=20.95 Aligned_cols=33 Identities=12% Similarity=0.364 Sum_probs=24.8
Q ss_pred cCCCceeEEEEEcCCCeEEEEEeecchHHHHHHHHHhccCCC
Q 046567 204 AKARVPIVKFVEKKSGVSFDIRHFMDICRVIRMVCHTWGLVG 245 (246)
Q Consensus 204 ~~ARVPIIKf~d~~tgI~~DISfnn~g~~~~r~~~~~~~~~~ 245 (246)
+..+||+++ + .|..+ .++..+++++++.||=.|
T Consensus 49 P~g~vP~L~--~--~~~~l-----~ES~aI~~YL~~~~~~~G 81 (84)
T d1gnwa2 49 PFGQVPAFE--D--GDLKL-----FESRAITQYIAHRYENQG 81 (84)
T ss_dssp TTCCSCEEE--E--TTEEE-----ECHHHHHHHHHHHTTTSS
T ss_pred hcCcceEEE--E--CCcEE-----ecHHHHHHHHHHHCcCCC
Confidence 567899997 3 34322 478999999999998655
No 20
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB {Enterococcus faecalis [TaxId: 1351]}
Probab=20.22 E-value=99 Score=22.80 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=33.8
Q ss_pred HHHHHHHHhhCCC--ceEEEeccccc-CCCCCCCCceEEEecCCCCChhHHHHHHHHHHHhCCC
Q 046567 136 EAVFDVIKYIWPK--CKPEVFGSFRT-GLYLPTSDIDVVIMESGIHNPATGLQALSRALLQRGI 196 (246)
Q Consensus 136 ~~l~~vv~~~~P~--~~V~~FGS~~t-GL~lp~SDIDl~I~~~~~~~~~~~L~~L~~~L~~~~~ 196 (246)
...+..|+...++ +.|.-+||++- ||.-+. .|||.|....... +..+...|...|.
T Consensus 14 ~~~~~~L~~~l~~~~~~IeHIGSTsVpGl~AKp-iIDI~v~V~~~~~----~~~~~~~L~~lGy 72 (167)
T d2nrka1 14 EEEAQALKQILKENCLKVEHIGSTSVPNLAAKP-IIDFLVIVEEIEK----VDLLQWEFERIGY 72 (167)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESGGGSTTCCBCS-CEEEEEEESCSGG----GGGGHHHHHHTTC
T ss_pred HHHHHHHHHhcCcccceeeeeccCCCCCCccCC-eeEEEEeecChhh----HHHHHHHHHhcCC
Confidence 3344444444443 58999999964 776544 8898888765432 2344455655554
Done!