BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046569
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 19/216 (8%)
Query: 5 GLERAIMTMKKEEQATVTISAEYLCGHEVSE--LVCANSVLYYEVTLIDFTKEKPFWKMD 62
G+++A+ M++EEQ + + Y G + N+ L YEVTL F K K W+MD
Sbjct: 201 GIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMD 260
Query: 63 THEKIEACERKKHDGNLLFRAGKYWRA-----------------SKKYEKATNGLRLSCY 105
T EK+E K G + F+ GKY +A S+K KA+ L+ +
Sbjct: 261 TKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320
Query: 106 LNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTI 165
LN A C LKL +Y++A C K L L+ N K L+RR +A L +E E + D ++ L +
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380
Query: 166 DPNNRDVKLVYMELKENQREYAKYQAEIFGSMLSKM 201
+P N+ +L ++ +E+ + I+ +M K
Sbjct: 381 NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKF 416
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 9 AIMTMKKEEQATVTISAEYLCGHEVS-ELVCANSVLYYEVTLIDFTKEKPF 58
+ TMK+ E + EY G S + +N+ L++E+ L+DF E F
Sbjct: 93 GVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLF 143
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 107 bits (266), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 19/216 (8%)
Query: 5 GLERAIMTMKKEEQATVTISAEYLCGHEVSE--LVCANSVLYYEVTLIDFTKEKPFWKMD 62
G+++A+ M++EEQ + + Y G + N+ L YEVTL F K K W+MD
Sbjct: 201 GIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMD 260
Query: 63 THEKIEACERKKHDGNLLFRAGKYWRA-----------------SKKYEKATNGLRLSCY 105
T EK+E K G + F+ GKY +A S+K KA+ L+ +
Sbjct: 261 TKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320
Query: 106 LNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTI 165
LN A C LKL +Y++A C K L L+ N K L+RR +A L +E E + D ++ L +
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380
Query: 166 DPNNRDVKLVYMELKENQREYAKYQAEIFGSMLSKM 201
+P N+ +L ++ +E+ + + +M K
Sbjct: 381 NPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKF 416
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 9 AIMTMKKEEQATVTISAEYLCGHEVS-ELVCANSVLYYEVTLIDFTKE 55
+ TMKK E + EY G S + +N+ L++EV L+DF E
Sbjct: 93 GVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFKGE 140
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 107 bits (266), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 97/188 (51%), Gaps = 19/188 (10%)
Query: 5 GLERAIMTMKKEEQATVTISAEYLCGHEVSE--LVCANSVLYYEVTLIDFTKEKPFWKMD 62
GLERAI M+K E + V + Y G E + N+ L YE+ L F K K W+M+
Sbjct: 80 GLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMN 139
Query: 63 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN-----------------GLRLSCY 105
+ EK+E K G + F+ GKY +A +Y+K + LRL+ +
Sbjct: 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199
Query: 106 LNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTI 165
LN A C LKL+ +S A C K LEL+ N K LFRR +A+L ++ E AD ++ L +
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQL 259
Query: 166 DPNNRDVK 173
PNN+ K
Sbjct: 260 YPNNKAAK 267
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 19/188 (10%)
Query: 5 GLERAIMTMKKEEQATVTISAEYLCGHEVSE--LVCANSVLYYEVTLIDFTKEKPFWKMD 62
GLERAI +K E + V + Y G E + N+ L YE+ L F K K W+ +
Sbjct: 80 GLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEXN 139
Query: 63 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN-----------------GLRLSCY 105
+ EK+E K G + F+ GKY +A +Y+K + LRL+ +
Sbjct: 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199
Query: 106 LNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTI 165
LN A C LKL+ +S A C K LEL+ N K L RR +A+L ++ E AD ++ L +
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259
Query: 166 DPNNRDVK 173
PNN+ K
Sbjct: 260 YPNNKAAK 267
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 25/219 (11%)
Query: 5 GLERAIMTMKKEEQATVTISAEYLCGHEVS---ELVCANSVLYYEVTLIDF--TKE-KPF 58
GL + +MK E+A V + E G E + V + L YEV +I F TKE K
Sbjct: 108 GLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKAR 167
Query: 59 WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN-------------------G 99
M E+I A +R+K DGN LF+ K A ++YE A
Sbjct: 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALA 227
Query: 100 LRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADI 159
++ C+LN AAC +KL+ Y EA C VL E N KALFRR +A + +++ D
Sbjct: 228 VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDF 287
Query: 160 KRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSML 198
++A P+++ ++ L E ++ + Q E++ +
Sbjct: 288 RKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF 326
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 74 KHDGNLLFRAGKYWRASKKYEKA---TNGLR---------------LSCYLNNAACKLKL 115
K+ GN F++ + A KKY K G R LSC LN ACKLK+
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 116 EDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLV 175
D+ A C + LE++P N KAL+RR+Q + E ++ AD+K+A I P ++ ++
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346
Query: 176 YMELKE 181
+++K+
Sbjct: 347 LLKVKQ 352
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 63/107 (58%), Gaps = 5/107 (4%)
Query: 69 ACERKKHDGNLLFRAGKYWRASKKYEKA-----TNGLRLSCYLNNAACKLKLEDYSEASS 123
+ E+ + +GN LF+ G Y A Y +A T + + N AAC LKLEDY +A +
Sbjct: 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET 86
Query: 124 LCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170
+K +E + +VKAL+RRSQA K L++ D++R ++++P N+
Sbjct: 87 EASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 61 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDY 118
MD EA K+ GN ++ G Y +A + Y+KA + S + N K DY
Sbjct: 3 MDPGNSAEAW---KNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDY 59
Query: 119 SEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVK 173
+A K LEL+P N KA +RR AY K + +K D ++AL +DPNN K
Sbjct: 60 QKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAK 114
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 56 KPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN----------------- 98
K + EK+++ K +GN F+ + A KY++A +
Sbjct: 24 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK 83
Query: 99 -GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEA 157
+ +SC LN A C K +DY +A +KVL+++ NVKAL++ A + LE+ +
Sbjct: 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143
Query: 158 DIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSMLSK 200
++ +A +++PNN D++ Y +E K FG M K
Sbjct: 144 NLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 2 VNEGLERAIMTMKKEEQATVTISAEYLCGHEVSE---LVCANSVLYYEVTLIDFTKEKPF 58
V EGL+RA++ MKK E A VTI EY G S+ +V NS + YEV L+ F K+K
Sbjct: 316 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKES 375
Query: 59 W 59
W
Sbjct: 376 W 376
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 59 WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATNGLR----------------- 101
W M EK +A +GN L+R G A+ KY A L+
Sbjct: 3 WAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLD 62
Query: 102 ---LSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEAD 158
LN CKL +E+Y E C+ +L NVKA F+R +A+ ++ +AD
Sbjct: 63 QQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQAD 122
Query: 159 IKRALTIDP 167
+ L +DP
Sbjct: 123 FAKVLELDP 131
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 2 VNEGLERAIMTMKKEEQATVTISAEYLCGHEVSE---LVCANSVLYYEVTLIDFTKE 55
V EGL+RA++ MKK E A VTI EY G S+ +V NS + YEV L+ F K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKD 356
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 77 GNLLFRAGKYWRASKKYEKATNGLRLS-----CYLNNAACKLKLEDYSEASSLCTKVLEL 131
GN ++ G Y A + Y+KA L L + N K DY EA K LEL
Sbjct: 16 GNAYYKQGDYDEAIEYYQKA---LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 132 EPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVK 173
+P N +A + AY K + ++ ++AL +DPNN + K
Sbjct: 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 63 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSE 120
H K + + K GN LF KY A+ Y +A N L Y N A C LK++ +
Sbjct: 2 PHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQ 61
Query: 121 ASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170
A + C + LEL+ +VKA F Q L+ ++ A+++RA ++ R
Sbjct: 62 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 77 GNLLFRAGKYWRASKKYEKATNGLRLSCYLNNAACKLKLE-------DYSEASSLCTKVL 129
GN ++ G Y A + Y+KA L Y NNA L DY EA K L
Sbjct: 16 GNAYYKQGDYDEAIEYYQKA-----LELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 130 ELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVK 173
EL P N +A + AY K + ++ ++AL + PNN + K
Sbjct: 71 ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAK 114
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 20/123 (16%)
Query: 65 EKIEACERKKHDGNLLFRAGKYWRASKKYEKATNGLR--------------------LSC 104
EK +A +GN L+R G A+ KY A L+
Sbjct: 3 EKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPL 62
Query: 105 YLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALT 164
LN CKL +E+Y E C+ +L NVKA F+R +A+ ++ +AD + L
Sbjct: 63 LLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLE 122
Query: 165 IDP 167
+DP
Sbjct: 123 LDP 125
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 74 KHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL 131
K GN LF KY A+ Y +A N L Y N A C LK++ +A + C + LEL
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67
Query: 132 EPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170
+ +VKA F Q L+ ++ A+++RA ++ R
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%)
Query: 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEAD 158
G + N K DY EA K LEL+P N +A + AY K + ++
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 159 IKRALTIDPNNRDVK 173
++AL +DPNN + K
Sbjct: 66 YQKALELDPNNAEAK 80
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 68 EACERKKHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSEASSLC 125
E + +K+ GN F+ G Y A + Y +A + Y N AAC KL ++ A C
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 126 TKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVK 173
+ L+ +K R++ + E K + + AL +DP+N + +
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 20/123 (16%)
Query: 65 EKIEACERKKHDGNLLFRAGKYWRASKKYEKATNGL--------------------RLSC 104
+K+++ E + GN LF Y A Y A L +
Sbjct: 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL 65
Query: 105 YLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALT 164
Y N + C L + D EA ++VL+ E N KALFRR++A + +L++ E D+K L
Sbjct: 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125
Query: 165 IDP 167
P
Sbjct: 126 NHP 128
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 77 GNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL 134
GN ++ G Y A + Y+KA + + N K DY EA K LEL+P
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 135 NVKALFRRSQAYLKTSELEKDEADIKRALTIDP 167
+ +A + AY K + ++ ++AL +DP
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 77 GNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL 134
GN ++ G Y A + Y+KA + + N K DY EA K LEL+P
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 135 NVKALFRRSQAYLKTSELEKDEADIKRALTIDP 167
+ +A + AY K + ++ ++AL +DP
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 104 CYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRAL 163
+ N K DY EA K LEL+P + +A + AY K + ++ ++AL
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 164 TIDP 167
+DP
Sbjct: 63 ELDP 66
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 74 KHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL 131
K+ GN F+ G Y +A K Y +A N Y N AAC KL ++ A C + ++L
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79
Query: 132 EPLNVKALFRRSQAYLKTSELEKDEADIKRALTID 166
EP +K R++ A + K ++AL +D
Sbjct: 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 67 IEACERKKHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSEASSL 124
++ E K N F+A Y A K Y +A N Y N + L+ E Y A
Sbjct: 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62
Query: 125 CTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYME 178
T+ +EL+ +K +RR+ + + + D + + + P+++D K+ Y E
Sbjct: 63 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 70 CERKKHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSEASSLCTK 127
E K N F+A Y A K Y +A N Y N + L+ E Y A T+
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 128 VLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYME 178
+EL+ +K +RR+ + + + D + + + P+++D K+ Y E
Sbjct: 73 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 80 LFRAGKYWRASKKYEKATNG-LRLSCYLNNAA-----CKLKLEDYSEASSLCTKVLELEP 133
L R G+Y A+ KYE ++ Y + C K E EA +C++VL++EP
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326
Query: 134 LNVKALFRRSQAYL 147
NV AL R++AYL
Sbjct: 327 DNVNALKDRAEAYL 340
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 77 GNLLFRAGKYWRASKKYEKATNG---------LRLSCYLNNAACKLKLEDYSEASSLCTK 127
G L AG+ A ++ A +G R + +L K L D TK
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTK 85
Query: 128 VLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMEL-KENQREY 186
V++L+ A +R LK +L++ E D K+ L +P+ + K +L K ++ +
Sbjct: 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR 145
Query: 187 AKYQA-EIFGS 196
+ QA FGS
Sbjct: 146 LRSQALNAFGS 156
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 67 IEACERKKHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSEASSL 124
++ E K N F+A Y A K Y +A N Y N + L+ E Y A +
Sbjct: 18 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALND 77
Query: 125 CTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYME 178
T+ +EL+ +K +RR+ + + + D + + + P+++D K+ Y E
Sbjct: 78 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 131
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 74 KHDGNLLFRAGKYWRASKKYEKATNGLRLSCYLNN-AACKLKLEDYSEASSLCTKVLELE 132
K GN FR KY A K Y A + +N +AC + + D + + TK LEL+
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK 69
Query: 133 PLNVKALFRRSQA 145
P K L RR+ A
Sbjct: 70 PDYSKVLLRRASA 82
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 1 NVNEGLERAIMTMKKEEQATVTISAEYLCGHEVSE--LVCANSVLYYEVTLIDFTKEKPF 58
++ G+++A+ M++EEQ + + Y G + N+ L YEVTL F K K
Sbjct: 201 DIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKES 260
Query: 59 WKMD 62
W+MD
Sbjct: 261 WEMD 264
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 9 AIMTMKKEEQATVTISAEYLCGHEVS-ELVCANSVLYYEVTLIDFTKEKPF 58
+ TMKK E + EY G S + +N+ L++E+ L+DF E F
Sbjct: 97 GVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLF 147
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 74 KHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL 131
K+ GN F A + A K Y+ A + Y N +AC + D + TK LE+
Sbjct: 25 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI 84
Query: 132 EPLNVKALFRRSQA 145
+P + KAL RR+ A
Sbjct: 85 KPDHSKALLRRASA 98
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 74 KHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL 131
K+ GN F A + A K Y+ A + Y N +AC + D + TK LE+
Sbjct: 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI 88
Query: 132 EPLNVKALFRRSQA 145
+P + KAL RR+ A
Sbjct: 89 KPDHSKALLRRASA 102
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 80 LFRAGKYWRASKKYEKATNG-LRLSCYLNNAA-----CKLKLEDYSEASSLCTKVLELEP 133
L R G+Y A+ KYE ++ Y + C K E EA +C++VL+ EP
Sbjct: 244 LIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQXEP 303
Query: 134 LNVKALFRRSQAYL 147
NV AL R++AYL
Sbjct: 304 DNVNALKDRAEAYL 317
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 16/106 (15%)
Query: 77 GNLLFRAGKYWRASKKYEKATNG---------LRLSCYLNNAACKLKLEDYSEASSLCTK 127
G L AG+ A ++ A +G R + +L K L D TK
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPD-------LTK 62
Query: 128 VLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVK 173
V+ L+ A +R LK +L++ E D K+ L +P+ ++ K
Sbjct: 63 VIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK 108
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 80 LFRAGKYWRASKKYEKATNG-LRLSCYLNNAA-----CKLKLEDYSEASSLCTKVLELEP 133
L R G+Y A+ KYE ++ Y + C K E EA +C++VL+ EP
Sbjct: 267 LIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQXEP 326
Query: 134 LNVKALFRRSQAYL 147
NV AL R++AYL
Sbjct: 327 DNVNALKDRAEAYL 340
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 18/131 (13%)
Query: 77 GNLLFRAGKYWRASKKYEKATNG---------LRLSCYLNNAACKLKLEDYSEASSLCTK 127
G L AG+ A ++ A +G R + +L K L D TK
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPD-------LTK 85
Query: 128 VLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMEL-KENQREY 186
V++L+ A +R LK +L++ E D K+ L +P+ + K +L K ++ +
Sbjct: 86 VIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEXQR 145
Query: 187 AKYQA-EIFGS 196
+ QA FGS
Sbjct: 146 LRSQALNAFGS 156
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 104 CYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRAL 163
+ N K DY EA K LEL+P + +A + AY K + ++ ++AL
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 164 TIDP 167
+DP
Sbjct: 65 ELDP 68
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 77 GNLLFRAGKYWRASKKYEKA--TNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEP 133
GN ++ G Y A + Y+KA + + N K DY EA K LEL+P
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 61 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDY 118
+ + E ER K +GN + + A Y KA N + N AA KL +Y
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 119 SEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR----DVKL 174
+ A C + + ++P KA R A ++ + A K+AL +DP+N ++K+
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
Query: 175 VYMELKE 181
++L+E
Sbjct: 123 AELKLRE 129
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 5 GLERAIMTMKKEEQATVTISAEYLCGHEVSE--LVCANSVLYYEVTLIDFTKEKPFWK 60
GLERAI M+K E + V + Y G E + N+ L YE+ L F K K W+
Sbjct: 223 GLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWE 280
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 107 NNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTID 166
NAA K +YS+A L T+ L + P N L R+ AY + + EK D + A +D
Sbjct: 18 GNAAMARK--EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75
Query: 167 P 167
P
Sbjct: 76 P 76
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 71 ERKKHDGNLLFRAGKYWRASKKYEKATNGLRLS--CYLNNAACKLKLEDYSEASSLCTKV 128
E++K GN LF+ G Y A Y++ + Y N A +KL +Y++A +C +
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 129 L 129
L
Sbjct: 65 L 65
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 2 VNEGLERAIMTMKKEEQATVTISAEYLCGHE-VSELVCANSVLYYEVTLIDF 52
V +G + + +M K E+ +V + ++Y G E E + NSVL +E+ LI F
Sbjct: 73 VIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 105 YLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSE 151
Y N AA KL + EA + C K +E +P V+A R++ A + E
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 105 YLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSE 151
Y N AA KL + EA + C K +E +P V+A R++ A + E
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 VNEGLERAIMTMKKEEQATVTISAEYLCGHE-VSELVCANSVLYYEVTLIDF 52
V +G + + +M+K E+ V I + Y G E E + NSVL +E+ L+ F
Sbjct: 74 VIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 2 VNEGLERAIMTMKKEEQATVTISAEYLCGHE-VSELVCANSVLYYEVTLIDF 52
V +G + + +M+K E+ V I + Y G E E + NSVL +E+ L+ F
Sbjct: 74 VIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 96 ATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKD 155
+ +R Y + K YS+A L +V + + +V AY+KT +++
Sbjct: 2 GNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRG 61
Query: 156 EADIKRALTIDPNNRDVKLV 175
++R+L P+N V V
Sbjct: 62 TELLERSLADAPDNVKVATV 81
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 113 LKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPN 168
++++ Y A L KV E P+N FR A ++ K AL + PN
Sbjct: 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPN 142
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 96 ATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKD 155
+ +R Y + K YS+A L +V + + +V AY+KT +++
Sbjct: 2 GNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRG 61
Query: 156 EADIKRALTIDPNNRDVKLV 175
++R+L P+N V V
Sbjct: 62 TELLERSLADAPDNVKVATV 81
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 113 LKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPN 168
++++ Y A L KV E P+N FR A ++ K AL + PN
Sbjct: 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 9 AIMTMKKEEQATVTISAEYLCGHEVS-ELVCANSVLYYEVTLIDFTKE 55
+ TMKK E + EY G S + +N+ L++E+ L+DF E
Sbjct: 81 GVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 128
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 36/80 (45%)
Query: 96 ATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKD 155
+ +R Y + K YSEA + +V + + +V+ AY+KT +++
Sbjct: 2 GNDDIRQVYYRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRG 61
Query: 156 EADIKRALTIDPNNRDVKLV 175
++R++ P+N V V
Sbjct: 62 TELLERSIADAPDNIKVATV 81
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 70 CERKKHDGNLLFRAGKYWRASKKYEK----ATNGLRLSCYLNNAACKLKLEDYSEASSLC 125
E H G + G R ++ E+ A + ++++ L ++++ Y A L
Sbjct: 42 VEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVL--GLTYVQVQKYDLAVPLL 99
Query: 126 TKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPN 168
KV E P+N FR A ++ K AL + PN
Sbjct: 100 VKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 9 AIMTMKKEEQATVTISAEYLCGHEVS-ELVCANSVLYYEVTLIDFTKE 55
+ TMKK E + EY G S + +N+ L++E+ L+DF E
Sbjct: 81 GVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 128
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 9 AIMTMKKEEQATVTISAEYLCGHEVS-ELVCANSVLYYEVTLIDFTKE 55
+ TMKK E + EY G S + +N+ L++E+ L+DF E
Sbjct: 97 GVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 144
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 96 ATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKD 155
+ +R Y + K YS+A L +V + + +V AY+KT +++
Sbjct: 2 GNDDIRQVYYEDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRG 61
Query: 156 EADIKRALTIDPNNRDVKLV 175
++R+L P+N V V
Sbjct: 62 TELLERSLADAPDNVKVATV 81
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 113 LKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPN 168
++++ Y A L KV E P+N FR A ++ K AL + PN
Sbjct: 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 9 AIMTMKKEEQATVTISAEYLCGHEVS-ELVCANSVLYYEVTLIDFTKE 55
+ TMKK E + EY G S + +N+ L++E+ L+DF E
Sbjct: 97 GVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGE 144
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 80 LFRAGKYWRASKKYEKATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLE 130
L R KY +++ + L+ S L N C+LK+ D+ A LCT E
Sbjct: 167 LLRGLKYMHSAQVIHR---DLKPSNLLVNENCELKIGDFGMARGLCTSPAE 214
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 80 LFRAGKYWRASKKYEKATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLE 130
L R KY +++ + L+ S L N C+LK+ D+ A LCT E
Sbjct: 168 LLRGLKYMHSAQVIHR---DLKPSNLLVNENCELKIGDFGMARGLCTSPAE 215
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 33/60 (55%)
Query: 113 LKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDV 172
++ +DY +A++ L+ +P N A R++ Y +K + ++AL+I P++ ++
Sbjct: 19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,479,090
Number of Sequences: 62578
Number of extensions: 202412
Number of successful extensions: 749
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 98
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)