Query 046569
Match_columns 202
No_of_seqs 176 out of 3241
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 13:28:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 2.6E-41 5.7E-46 266.6 24.3 202 1-202 136-357 (397)
2 KOG0545 Aryl-hydrocarbon recep 99.9 6.9E-27 1.5E-31 173.8 14.8 197 3-199 69-328 (329)
3 KOG0553 TPR repeat-containing 99.9 1.3E-21 2.8E-26 149.8 13.2 123 65-187 76-200 (304)
4 KOG4234 TPR repeat-containing 99.8 2.2E-18 4.8E-23 125.2 15.0 124 66-189 91-221 (271)
5 PRK15359 type III secretion sy 99.7 1.6E-16 3.5E-21 113.2 15.1 112 73-184 27-140 (144)
6 KOG0548 Molecular co-chaperone 99.7 3.8E-17 8.2E-22 133.4 13.1 116 68-183 356-473 (539)
7 PLN03088 SGT1, suppressor of 99.7 2.2E-16 4.9E-21 128.2 15.6 116 71-186 3-120 (356)
8 KOG4648 Uncharacterized conser 99.7 4.5E-17 9.8E-22 127.2 9.6 121 63-183 90-212 (536)
9 KOG0547 Translocase of outer m 99.7 7.4E-16 1.6E-20 124.9 13.8 107 59-166 104-212 (606)
10 PRK15363 pathogenicity island 99.7 1.1E-14 2.4E-19 103.2 15.8 114 67-180 32-147 (157)
11 KOG0548 Molecular co-chaperone 99.7 7E-16 1.5E-20 126.1 10.9 111 70-180 2-114 (539)
12 TIGR00990 3a0801s09 mitochondr 99.7 1.3E-14 2.9E-19 126.0 18.8 133 36-170 94-228 (615)
13 TIGR02552 LcrH_SycD type III s 99.6 1.2E-14 2.6E-19 102.1 14.9 115 69-183 16-132 (135)
14 KOG0550 Molecular chaperone (D 99.6 4.5E-15 9.6E-20 118.2 11.5 129 66-198 245-379 (486)
15 PRK11189 lipoprotein NlpI; Pro 99.6 5E-15 1.1E-19 117.6 10.6 103 69-171 63-167 (296)
16 KOG4626 O-linked N-acetylgluco 99.6 1.1E-14 2.5E-19 121.1 9.9 131 67-198 249-381 (966)
17 KOG0551 Hsp90 co-chaperone CNS 99.6 5.6E-14 1.2E-18 109.3 13.0 105 68-172 79-189 (390)
18 KOG4626 O-linked N-acetylgluco 99.6 4.6E-14 9.9E-19 117.6 12.9 116 68-183 386-503 (966)
19 TIGR00990 3a0801s09 mitochondr 99.5 8.1E-13 1.8E-17 114.8 15.8 120 68-187 329-450 (615)
20 PRK10370 formate-dependent nit 99.5 1.1E-12 2.4E-17 98.2 14.4 109 68-176 71-184 (198)
21 PF13414 TPR_11: TPR repeat; P 99.5 1.1E-13 2.3E-18 86.1 6.9 67 101-167 2-69 (69)
22 TIGR02795 tol_pal_ybgF tol-pal 99.5 1.8E-12 3.9E-17 88.6 13.1 108 70-177 2-117 (119)
23 KOG0624 dsRNA-activated protei 99.5 2.8E-12 6.1E-17 100.6 14.0 112 68-179 36-149 (504)
24 PRK15331 chaperone protein Sic 99.4 1E-11 2.2E-16 88.6 13.3 117 68-185 35-153 (165)
25 PRK02603 photosystem I assembl 99.4 1.1E-11 2.5E-16 90.8 14.1 107 63-169 28-153 (172)
26 KOG0376 Serine-threonine phosp 99.4 3.9E-13 8.4E-18 109.3 6.7 119 69-187 3-123 (476)
27 KOG1126 DNA-binding cell divis 99.4 1.2E-12 2.7E-17 109.5 9.1 119 69-187 420-540 (638)
28 PRK09782 bacteriophage N4 rece 99.4 2.1E-11 4.6E-16 109.9 17.0 115 70-184 609-725 (987)
29 PRK10370 formate-dependent nit 99.4 2E-11 4.3E-16 91.5 13.5 115 83-198 52-171 (198)
30 PF13432 TPR_16: Tetratricopep 99.4 2.8E-12 6E-17 78.7 7.2 65 106-170 1-65 (65)
31 KOG4642 Chaperone-dependent E3 99.4 1.5E-12 3.3E-17 97.2 6.9 113 68-180 8-127 (284)
32 TIGR03302 OM_YfiO outer membra 99.4 8E-11 1.7E-15 90.3 16.8 112 68-179 31-158 (235)
33 cd00189 TPR Tetratricopeptide 99.4 1.6E-11 3.5E-16 79.0 11.0 97 72-168 2-100 (100)
34 COG4785 NlpI Lipoprotein NlpI, 99.4 1.9E-12 4E-17 95.7 6.9 135 33-170 31-167 (297)
35 TIGR02521 type_IV_pilW type IV 99.3 1.2E-10 2.6E-15 87.7 16.5 113 73-185 102-218 (234)
36 PRK15359 type III secretion sy 99.3 2.1E-11 4.6E-16 86.8 11.5 96 90-188 13-110 (144)
37 KOG1155 Anaphase-promoting com 99.3 8E-11 1.7E-15 95.5 15.8 128 68-196 362-491 (559)
38 CHL00033 ycf3 photosystem I as 99.3 1.1E-10 2.4E-15 85.1 15.3 105 66-170 31-154 (168)
39 TIGR02521 type_IV_pilW type IV 99.3 1.5E-10 3.3E-15 87.2 16.1 114 72-185 67-184 (234)
40 PRK09782 bacteriophage N4 rece 99.3 6.7E-11 1.5E-15 106.7 16.4 119 77-197 583-703 (987)
41 PRK15179 Vi polysaccharide bio 99.3 6.1E-11 1.3E-15 103.4 15.4 129 68-197 84-214 (694)
42 PF12895 Apc3: Anaphase-promot 99.3 8.9E-12 1.9E-16 80.5 7.8 79 83-162 2-84 (84)
43 PF13414 TPR_11: TPR repeat; P 99.3 1.4E-11 3.1E-16 76.3 8.3 64 70-133 3-69 (69)
44 PF13429 TPR_15: Tetratricopep 99.3 1.8E-11 3.9E-16 96.4 10.4 131 69-200 145-277 (280)
45 KOG0547 Translocase of outer m 99.3 2.9E-11 6.4E-16 98.5 11.6 110 68-177 324-435 (606)
46 PRK10803 tol-pal system protei 99.3 1.7E-10 3.6E-15 89.9 15.2 111 70-180 142-261 (263)
47 PRK12370 invasion protein regu 99.3 8.4E-11 1.8E-15 101.1 15.0 87 84-170 318-406 (553)
48 KOG1126 DNA-binding cell divis 99.3 1E-11 2.3E-16 104.1 8.9 121 67-187 486-608 (638)
49 PRK11189 lipoprotein NlpI; Pro 99.3 1.1E-10 2.3E-15 92.9 14.2 104 84-187 40-149 (296)
50 PF13512 TPR_18: Tetratricopep 99.3 1.2E-10 2.7E-15 81.3 12.8 108 70-177 10-140 (142)
51 KOG1173 Anaphase-promoting com 99.3 3.8E-11 8.2E-16 99.3 11.4 113 70-182 414-535 (611)
52 PRK12370 invasion protein regu 99.3 1.1E-10 2.4E-15 100.3 14.4 127 70-197 338-467 (553)
53 KOG1155 Anaphase-promoting com 99.3 1.3E-10 2.8E-15 94.3 13.1 122 75-197 335-458 (559)
54 KOG0624 dsRNA-activated protei 99.3 5.2E-11 1.1E-15 93.6 10.3 122 66-187 265-392 (504)
55 PRK15174 Vi polysaccharide exp 99.3 1.8E-10 3.8E-15 100.8 14.7 112 76-187 218-335 (656)
56 TIGR02552 LcrH_SycD type III s 99.3 1.6E-10 3.5E-15 81.0 11.8 99 91-189 4-104 (135)
57 PF13371 TPR_9: Tetratricopept 99.3 5.2E-11 1.1E-15 74.6 8.1 71 109-179 2-72 (73)
58 COG5010 TadD Flp pilus assembl 99.3 2.7E-10 5.8E-15 86.4 13.3 117 72-188 102-220 (257)
59 KOG2076 RNA polymerase III tra 99.2 8.1E-10 1.8E-14 95.6 16.6 133 68-201 137-271 (895)
60 PRK15174 Vi polysaccharide exp 99.2 4.6E-10 9.9E-15 98.3 14.9 113 70-182 246-364 (656)
61 COG3063 PilF Tfp pilus assembl 99.2 9.1E-10 2E-14 82.2 14.1 118 68-185 33-188 (250)
62 COG3063 PilF Tfp pilus assembl 99.2 3E-10 6.6E-15 84.7 11.6 119 67-185 100-222 (250)
63 COG1729 Uncharacterized protei 99.2 6E-10 1.3E-14 85.4 13.5 110 71-180 142-259 (262)
64 TIGR02917 PEP_TPR_lipo putativ 99.2 6.6E-10 1.4E-14 99.1 15.6 126 70-197 770-897 (899)
65 KOG1125 TPR repeat-containing 99.2 5.2E-11 1.1E-15 98.7 7.6 99 70-168 430-530 (579)
66 PRK10866 outer membrane biogen 99.2 4.4E-09 9.6E-14 81.2 17.9 118 70-187 32-178 (243)
67 PF13525 YfiO: Outer membrane 99.2 2.1E-09 4.5E-14 80.9 15.6 118 69-186 4-143 (203)
68 PF14559 TPR_19: Tetratricopep 99.2 1E-10 2.2E-15 72.2 6.6 67 113-179 2-68 (68)
69 KOG4555 TPR repeat-containing 99.2 1.4E-09 3.1E-14 74.4 12.4 107 63-169 36-148 (175)
70 PF13432 TPR_16: Tetratricopep 99.2 2.6E-10 5.7E-15 69.8 8.1 62 75-136 2-65 (65)
71 PLN02789 farnesyltranstransfer 99.2 1.2E-09 2.6E-14 87.4 14.0 115 68-182 69-188 (320)
72 PRK15363 pathogenicity island 99.2 7.2E-10 1.6E-14 78.8 11.2 89 99-187 32-120 (157)
73 TIGR02917 PEP_TPR_lipo putativ 99.2 1.4E-09 3E-14 97.0 15.7 119 68-186 123-243 (899)
74 PRK11447 cellulose synthase su 99.1 1.3E-09 2.8E-14 101.1 15.1 107 77-183 276-398 (1157)
75 PRK10049 pgaA outer membrane p 99.1 1.7E-09 3.6E-14 96.4 15.1 111 70-181 49-161 (765)
76 PRK11447 cellulose synthase su 99.1 2.2E-09 4.8E-14 99.5 16.3 115 74-188 355-513 (1157)
77 PRK11788 tetratricopeptide rep 99.1 4E-09 8.6E-14 86.6 16.0 111 72-182 109-226 (389)
78 PRK11788 tetratricopeptide rep 99.1 3.9E-09 8.4E-14 86.7 15.7 106 73-179 183-291 (389)
79 TIGR03302 OM_YfiO outer membra 99.1 5.1E-09 1.1E-13 80.3 15.1 120 71-190 71-223 (235)
80 KOG4162 Predicted calmodulin-b 99.1 6.4E-10 1.4E-14 94.9 10.6 104 68-171 682-789 (799)
81 KOG0544 FKBP-type peptidyl-pro 99.1 1.1E-10 2.5E-15 74.2 4.0 52 1-52 55-107 (108)
82 PRK15179 Vi polysaccharide bio 99.1 3.7E-09 8.1E-14 92.4 14.6 117 67-183 117-236 (694)
83 KOG0546 HSP90 co-chaperone CPR 99.1 4.5E-10 9.7E-15 88.5 7.9 138 62-199 214-372 (372)
84 KOG0553 TPR repeat-containing 99.1 1.2E-09 2.6E-14 84.4 9.9 96 101-197 80-175 (304)
85 PLN02789 farnesyltranstransfer 99.1 8.6E-09 1.9E-13 82.6 15.0 117 80-197 47-168 (320)
86 PRK10049 pgaA outer membrane p 99.1 5.7E-09 1.2E-13 93.0 14.9 109 71-179 360-470 (765)
87 KOG2002 TPR-containing nuclear 99.0 6.8E-09 1.5E-13 90.7 14.2 115 70-184 270-390 (1018)
88 KOG2003 TPR repeat-containing 99.0 1.9E-09 4.1E-14 87.8 9.7 116 70-185 490-607 (840)
89 COG4783 Putative Zn-dependent 99.0 2.3E-08 5E-13 81.9 15.1 131 68-198 304-436 (484)
90 cd00189 TPR Tetratricopeptide 99.0 1.1E-08 2.5E-13 65.4 11.0 84 104-187 2-85 (100)
91 PF13424 TPR_12: Tetratricopep 99.0 1.3E-09 2.8E-14 69.2 6.1 67 99-165 2-75 (78)
92 CHL00033 ycf3 photosystem I as 99.0 1.2E-08 2.6E-13 74.4 11.9 107 78-184 7-120 (168)
93 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 2.1E-09 4.6E-14 88.0 8.6 67 99-165 72-141 (453)
94 PF09976 TPR_21: Tetratricopep 99.0 1.3E-08 2.9E-13 72.4 11.6 91 70-160 11-109 (145)
95 KOG1308 Hsp70-interacting prot 99.0 7.2E-10 1.6E-14 87.0 5.4 106 62-167 106-213 (377)
96 KOG1125 TPR repeat-containing 99.0 7.5E-09 1.6E-13 86.1 11.0 128 62-189 311-517 (579)
97 PF12688 TPR_5: Tetratrico pep 99.0 3.3E-08 7.2E-13 67.8 12.5 94 71-164 2-103 (120)
98 PF14559 TPR_19: Tetratricopep 98.9 3.4E-09 7.4E-14 65.3 6.6 65 80-144 1-67 (68)
99 COG5010 TadD Flp pilus assembl 98.9 2.1E-08 4.6E-13 76.2 12.0 112 74-185 70-183 (257)
100 PRK14574 hmsH outer membrane p 98.9 2.2E-08 4.7E-13 89.2 14.0 112 70-183 34-149 (822)
101 PF13429 TPR_15: Tetratricopep 98.9 1E-08 2.2E-13 80.8 10.4 119 70-188 110-232 (280)
102 TIGR02795 tol_pal_ybgF tol-pal 98.9 3.3E-08 7.2E-13 67.2 11.5 86 102-187 2-93 (119)
103 KOG0550 Molecular chaperone (D 98.9 2.3E-08 5.1E-13 80.4 11.9 129 68-197 201-347 (486)
104 PLN03088 SGT1, suppressor of 98.9 2.2E-08 4.9E-13 81.6 12.1 87 105-191 5-91 (356)
105 PF13424 TPR_12: Tetratricopep 98.9 2E-08 4.4E-13 63.6 9.1 64 68-131 3-75 (78)
106 KOG2002 TPR-containing nuclear 98.9 8.3E-09 1.8E-13 90.2 9.5 111 75-185 651-765 (1018)
107 KOG3060 Uncharacterized conser 98.9 1.8E-07 3.9E-12 71.0 15.2 110 71-180 87-198 (289)
108 KOG0549 FKBP-type peptidyl-pro 98.9 3E-09 6.5E-14 76.3 5.2 56 1-56 123-179 (188)
109 KOG2076 RNA polymerase III tra 98.9 5E-08 1.1E-12 84.8 13.5 102 68-169 412-516 (895)
110 PRK02603 photosystem I assembl 98.9 3.6E-08 7.9E-13 72.2 10.9 85 99-183 32-119 (172)
111 PF13371 TPR_9: Tetratricopept 98.9 2.1E-08 4.5E-13 62.7 8.2 68 77-144 2-71 (73)
112 COG4235 Cytochrome c biogenesi 98.9 6.1E-08 1.3E-12 75.3 12.3 109 68-176 154-267 (287)
113 PF06552 TOM20_plant: Plant sp 98.9 4E-08 8.7E-13 71.0 10.2 96 86-181 7-125 (186)
114 KOG1840 Kinesin light chain [C 98.8 1.1E-07 2.3E-12 80.2 13.5 130 69-199 240-395 (508)
115 KOG1129 TPR repeat-containing 98.8 1.8E-08 3.8E-13 79.2 8.0 110 77-186 331-445 (478)
116 PRK14720 transcript cleavage f 98.8 1.6E-07 3.5E-12 83.5 14.2 127 68-198 29-176 (906)
117 PF09976 TPR_21: Tetratricopep 98.8 1.6E-06 3.4E-11 61.7 16.0 93 70-163 48-145 (145)
118 KOG1156 N-terminal acetyltrans 98.8 1.4E-07 3E-12 79.7 11.6 118 71-188 8-127 (700)
119 COG4700 Uncharacterized protei 98.7 8.7E-07 1.9E-11 64.6 13.6 100 70-169 89-193 (251)
120 KOG1840 Kinesin light chain [C 98.7 4.6E-07 1E-11 76.4 13.8 99 68-166 197-313 (508)
121 PRK10153 DNA-binding transcrip 98.7 3.4E-07 7.5E-12 77.9 13.2 101 69-170 338-487 (517)
122 COG2956 Predicted N-acetylgluc 98.7 6.1E-07 1.3E-11 70.4 13.3 91 99-189 177-268 (389)
123 COG4783 Putative Zn-dependent 98.7 4E-07 8.6E-12 74.8 12.7 107 73-179 343-451 (484)
124 PRK14574 hmsH outer membrane p 98.7 4.2E-07 9.1E-12 81.1 13.9 120 77-198 75-196 (822)
125 TIGR00540 hemY_coli hemY prote 98.7 2.2E-06 4.7E-11 71.3 17.3 122 66-187 80-204 (409)
126 KOG1128 Uncharacterized conser 98.7 1E-07 2.2E-12 81.5 9.2 118 70-187 485-604 (777)
127 KOG3060 Uncharacterized conser 98.7 1.2E-06 2.7E-11 66.6 14.1 110 77-186 127-241 (289)
128 PRK10747 putative protoheme IX 98.7 2.6E-06 5.6E-11 70.6 17.4 122 66-187 80-204 (398)
129 cd05804 StaR_like StaR_like; a 98.7 4.4E-07 9.4E-12 73.7 12.0 98 70-167 114-217 (355)
130 COG4105 ComL DNA uptake lipopr 98.7 8E-06 1.7E-10 62.5 17.6 117 70-186 34-169 (254)
131 TIGR00540 hemY_coli hemY prote 98.6 5.5E-07 1.2E-11 74.9 12.2 129 69-199 262-398 (409)
132 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 8.3E-07 1.8E-11 73.0 12.6 68 65-132 70-142 (453)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 6.3E-07 1.4E-11 73.6 10.8 96 75-170 205-302 (395)
134 PRK10747 putative protoheme IX 98.6 1.6E-06 3.5E-11 71.8 12.9 125 69-197 262-387 (398)
135 PF14938 SNAP: Soluble NSF att 98.6 1.1E-06 2.3E-11 69.5 11.1 127 68-195 112-254 (282)
136 COG2956 Predicted N-acetylgluc 98.6 3.8E-06 8.3E-11 66.0 13.6 118 69-186 106-230 (389)
137 KOG1129 TPR repeat-containing 98.5 2.3E-07 5E-12 73.0 6.7 107 70-176 358-469 (478)
138 PRK10803 tol-pal system protei 98.5 2.2E-06 4.7E-11 67.0 12.0 82 102-183 142-230 (263)
139 cd05804 StaR_like StaR_like; a 98.5 2.3E-06 5E-11 69.4 12.8 123 73-196 46-211 (355)
140 PF12895 Apc3: Anaphase-promot 98.5 1.6E-07 3.5E-12 60.4 4.7 75 115-190 2-78 (84)
141 PRK15331 chaperone protein Sic 98.5 2.5E-06 5.5E-11 61.1 10.9 89 99-187 34-122 (165)
142 KOG1310 WD40 repeat protein [G 98.5 5.4E-07 1.2E-11 74.8 8.4 120 64-183 368-492 (758)
143 COG4235 Cytochrome c biogenesi 98.5 5.7E-06 1.2E-10 64.5 13.2 112 87-199 139-255 (287)
144 PF00515 TPR_1: Tetratricopept 98.5 2.3E-07 5E-12 48.9 3.9 32 137-168 2-33 (34)
145 PF13525 YfiO: Outer membrane 98.5 2.5E-05 5.3E-10 58.8 16.4 117 70-186 42-191 (203)
146 PF13428 TPR_14: Tetratricopep 98.5 4.5E-07 9.7E-12 50.9 5.2 40 104-143 3-42 (44)
147 PF13431 TPR_17: Tetratricopep 98.5 1.3E-07 2.9E-12 49.9 2.8 33 124-156 1-33 (34)
148 PF13428 TPR_14: Tetratricopep 98.5 3.9E-07 8.6E-12 51.1 4.9 43 136-178 1-43 (44)
149 KOG4162 Predicted calmodulin-b 98.5 4.2E-06 9.1E-11 72.2 13.1 116 72-187 652-771 (799)
150 KOG4648 Uncharacterized conser 98.5 6.1E-07 1.3E-11 71.1 7.0 81 105-185 100-180 (536)
151 PF12688 TPR_5: Tetratrico pep 98.5 3.2E-06 6.9E-11 58.0 9.7 81 103-183 2-88 (120)
152 KOG1174 Anaphase-promoting com 98.4 3E-06 6.5E-11 68.7 10.6 97 87-184 421-519 (564)
153 PF00254 FKBP_C: FKBP-type pep 98.4 7.6E-07 1.6E-11 58.5 6.0 50 1-50 43-94 (94)
154 KOG1173 Anaphase-promoting com 98.4 2.6E-06 5.6E-11 71.2 10.2 121 67-187 309-431 (611)
155 PF07719 TPR_2: Tetratricopept 98.4 6.7E-07 1.4E-11 47.0 4.6 33 137-169 2-34 (34)
156 PF00515 TPR_1: Tetratricopept 98.4 5.8E-07 1.3E-11 47.3 4.1 34 102-135 1-34 (34)
157 PF03704 BTAD: Bacterial trans 98.4 2.7E-05 5.9E-10 55.2 14.0 94 71-164 7-124 (146)
158 KOG2003 TPR repeat-containing 98.4 1.4E-05 3E-10 65.7 13.6 115 67-181 555-705 (840)
159 KOG0543 FKBP-type peptidyl-pro 98.4 4.6E-06 1E-10 67.3 10.4 97 72-168 259-358 (397)
160 KOG1128 Uncharacterized conser 98.4 2.8E-06 6.2E-11 72.8 9.3 104 84-187 464-570 (777)
161 KOG4234 TPR repeat-containing 98.4 6.7E-06 1.4E-10 60.7 9.9 96 103-199 96-196 (271)
162 PF14853 Fis1_TPR_C: Fis1 C-te 98.3 4.1E-06 9E-11 48.7 7.1 49 137-185 2-50 (53)
163 KOG1174 Anaphase-promoting com 98.3 1.4E-05 3E-10 65.0 12.4 118 69-186 231-384 (564)
164 PRK14720 transcript cleavage f 98.3 1.4E-05 2.9E-10 71.6 13.4 112 70-182 116-269 (906)
165 PF14938 SNAP: Soluble NSF att 98.3 1.7E-05 3.6E-10 62.7 12.7 121 67-188 32-173 (282)
166 PRK11906 transcriptional regul 98.3 1.1E-05 2.5E-10 66.5 11.7 94 86-179 274-381 (458)
167 PRK11906 transcriptional regul 98.3 6.8E-06 1.5E-10 67.8 10.0 87 84-170 318-406 (458)
168 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.6E-05 5.6E-10 64.2 12.9 107 82-189 181-287 (395)
169 PRK10866 outer membrane biogen 98.3 8.9E-06 1.9E-10 62.9 9.6 75 99-173 29-106 (243)
170 COG1729 Uncharacterized protei 98.3 2.4E-05 5.1E-10 60.4 11.4 83 105-187 144-232 (262)
171 PF07719 TPR_2: Tetratricopept 98.3 3.2E-06 6.9E-11 44.3 4.8 34 102-135 1-34 (34)
172 PF12569 NARP1: NMDA receptor- 98.2 1.4E-05 3E-10 68.0 10.8 76 104-179 196-271 (517)
173 KOG1127 TPR repeat-containing 98.2 9.8E-06 2.1E-10 71.8 9.9 86 102-187 562-647 (1238)
174 PRK10941 hypothetical protein; 98.2 2.4E-05 5.2E-10 61.2 11.1 85 99-183 178-262 (269)
175 KOG0495 HAT repeat protein [RN 98.2 4.5E-05 9.9E-10 65.2 13.2 109 71-179 652-762 (913)
176 PF04733 Coatomer_E: Coatomer 98.2 1.7E-05 3.6E-10 63.0 9.3 106 78-183 139-248 (290)
177 PF04733 Coatomer_E: Coatomer 98.1 3E-05 6.6E-10 61.5 10.3 93 84-176 181-276 (290)
178 PF13512 TPR_18: Tetratricopep 98.1 7E-05 1.5E-09 52.6 10.8 72 101-172 9-83 (142)
179 KOG1156 N-terminal acetyltrans 98.1 3.7E-05 8E-10 65.4 10.8 95 72-166 77-173 (700)
180 KOG0495 HAT repeat protein [RN 98.1 2.7E-05 5.9E-10 66.5 9.9 106 79-184 627-733 (913)
181 PF12968 DUF3856: Domain of Un 98.1 0.00053 1.2E-08 46.4 13.9 92 74-165 13-129 (144)
182 KOG4555 TPR repeat-containing 98.1 0.00013 2.9E-09 50.3 11.3 64 104-167 45-108 (175)
183 COG4785 NlpI Lipoprotein NlpI, 98.1 3E-05 6.4E-10 58.1 8.6 77 99-175 62-138 (297)
184 KOG1130 Predicted G-alpha GTPa 98.1 4.9E-06 1.1E-10 67.6 4.6 102 66-167 191-306 (639)
185 KOG1127 TPR repeat-containing 98.0 2.8E-05 6.1E-10 69.1 8.5 112 72-183 564-677 (1238)
186 PF13181 TPR_8: Tetratricopept 98.0 1E-05 2.3E-10 42.4 3.8 32 137-168 2-33 (34)
187 KOG3785 Uncharacterized conser 98.0 9.4E-05 2E-09 59.2 9.9 102 78-183 30-134 (557)
188 KOG1130 Predicted G-alpha GTPa 97.9 3.3E-05 7.1E-10 62.9 7.1 97 70-166 17-125 (639)
189 PF12569 NARP1: NMDA receptor- 97.9 0.0002 4.4E-09 61.1 12.0 97 70-166 194-292 (517)
190 KOG2376 Signal recognition par 97.9 0.00014 3E-09 61.5 10.4 99 72-170 112-258 (652)
191 COG2976 Uncharacterized protei 97.9 0.0007 1.5E-08 49.9 12.3 101 72-173 91-196 (207)
192 KOG4642 Chaperone-dependent E3 97.9 2.3E-05 5E-10 59.3 4.6 78 105-182 13-90 (284)
193 PF13181 TPR_8: Tetratricopept 97.8 3.6E-05 7.9E-10 40.2 4.0 33 103-135 2-34 (34)
194 KOG2376 Signal recognition par 97.8 0.00048 1E-08 58.3 12.3 88 74-162 83-201 (652)
195 PF15015 NYD-SP12_N: Spermatog 97.8 0.00027 5.8E-09 57.7 10.4 97 69-165 175-291 (569)
196 KOG3785 Uncharacterized conser 97.8 0.0012 2.5E-08 53.2 13.5 110 71-180 58-195 (557)
197 PRK10902 FKBP-type peptidyl-pr 97.8 5.6E-05 1.2E-09 59.1 6.1 53 1-54 197-250 (269)
198 KOG4507 Uncharacterized conser 97.8 7.3E-05 1.6E-09 63.3 6.9 105 77-181 614-721 (886)
199 KOG4151 Myosin assembly protei 97.7 0.00021 4.6E-09 62.2 9.3 122 62-183 45-174 (748)
200 PF13431 TPR_17: Tetratricopep 97.7 3.2E-05 6.9E-10 40.7 2.6 31 92-122 1-33 (34)
201 COG3071 HemY Uncharacterized e 97.7 0.0047 1E-07 50.1 15.4 121 65-185 79-202 (400)
202 COG3071 HemY Uncharacterized e 97.7 0.00086 1.9E-08 54.3 10.8 97 71-169 264-361 (400)
203 PF10300 DUF3808: Protein of u 97.7 0.00062 1.3E-08 57.7 10.7 100 68-167 265-378 (468)
204 KOG3081 Vesicle coat complex C 97.7 0.0014 2.9E-08 50.7 11.3 110 74-183 112-254 (299)
205 COG4105 ComL DNA uptake lipopr 97.6 0.00044 9.4E-09 53.1 8.7 73 100-172 32-107 (254)
206 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00034 7.4E-09 40.6 6.2 41 103-143 2-42 (53)
207 KOG4814 Uncharacterized conser 97.6 0.0013 2.8E-08 56.4 11.8 99 68-166 352-458 (872)
208 KOG3364 Membrane protein invol 97.6 0.0011 2.4E-08 45.9 9.4 85 101-185 31-120 (149)
209 KOG2053 Mitochondrial inherita 97.6 0.0017 3.6E-08 57.6 12.6 103 80-183 19-123 (932)
210 KOG2796 Uncharacterized conser 97.6 0.00088 1.9E-08 51.8 9.7 95 75-169 217-319 (366)
211 KOG1586 Protein required for f 97.6 0.013 2.8E-07 44.7 15.2 116 72-187 115-248 (288)
212 KOG3824 Huntingtin interacting 97.6 0.00057 1.2E-08 53.9 8.3 76 106-181 120-195 (472)
213 PRK10153 DNA-binding transcrip 97.5 0.00075 1.6E-08 57.8 9.1 65 72-137 422-488 (517)
214 PF13174 TPR_6: Tetratricopept 97.5 0.00018 3.9E-09 37.1 3.3 31 138-168 2-32 (33)
215 PF13176 TPR_7: Tetratricopept 97.4 0.00013 2.9E-09 38.8 2.6 23 139-161 2-24 (36)
216 PLN03081 pentatricopeptide (PP 97.4 0.0024 5.2E-08 56.8 12.0 90 76-165 468-557 (697)
217 COG0457 NrfG FOG: TPR repeat [ 97.4 0.012 2.6E-07 42.8 14.2 90 79-168 139-234 (291)
218 PF13174 TPR_6: Tetratricopept 97.4 0.00033 7.2E-09 36.0 4.0 33 103-135 1-33 (33)
219 PF13176 TPR_7: Tetratricopept 97.4 0.00029 6.3E-09 37.4 3.7 29 104-132 1-29 (36)
220 PF04781 DUF627: Protein of un 97.4 0.0024 5.2E-08 42.8 8.8 91 76-166 2-108 (111)
221 smart00028 TPR Tetratricopepti 97.4 0.00029 6.3E-09 35.2 3.6 30 138-167 3-32 (34)
222 KOG0376 Serine-threonine phosp 97.4 0.00025 5.3E-09 58.7 4.8 68 103-170 5-72 (476)
223 KOG4340 Uncharacterized conser 97.4 0.0031 6.8E-08 49.7 10.5 83 80-162 20-104 (459)
224 COG3118 Thioredoxin domain-con 97.4 0.021 4.5E-07 44.9 14.6 114 71-184 135-286 (304)
225 COG4976 Predicted methyltransf 97.3 0.00037 8E-09 52.7 4.7 60 111-170 4-63 (287)
226 COG0457 NrfG FOG: TPR repeat [ 97.3 0.0086 1.9E-07 43.6 12.3 98 71-168 168-268 (291)
227 KOG2471 TPR repeat-containing 97.3 0.00072 1.6E-08 56.3 6.7 111 70-180 240-379 (696)
228 smart00028 TPR Tetratricopepti 97.3 0.00054 1.2E-08 34.2 3.8 33 103-135 2-34 (34)
229 PLN03218 maturation of RBCL 1; 97.3 0.018 3.9E-07 53.6 15.9 86 79-164 588-677 (1060)
230 PF06552 TOM20_plant: Plant sp 97.3 0.0019 4.1E-08 47.1 7.6 57 84-140 49-118 (186)
231 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0039 8.5E-08 49.7 9.9 86 100-185 79-168 (390)
232 PLN03218 maturation of RBCL 1; 97.2 0.024 5.2E-07 52.8 16.1 90 76-166 513-609 (1060)
233 KOG1941 Acetylcholine receptor 97.2 0.0081 1.7E-07 48.6 11.4 89 99-187 80-179 (518)
234 COG2912 Uncharacterized conser 97.2 0.0051 1.1E-07 47.8 9.9 85 99-183 178-262 (269)
235 PF14561 TPR_20: Tetratricopep 97.2 0.0056 1.2E-07 39.8 8.7 66 121-186 7-74 (90)
236 KOG0545 Aryl-hydrocarbon recep 97.1 0.0052 1.1E-07 47.1 9.0 80 100-179 176-273 (329)
237 PF08631 SPO22: Meiosis protei 97.1 0.087 1.9E-06 41.6 17.6 126 60-185 25-171 (278)
238 KOG4340 Uncharacterized conser 97.1 0.0036 7.7E-08 49.4 8.2 66 100-165 142-207 (459)
239 PLN03081 pentatricopeptide (PP 97.1 0.01 2.3E-07 52.8 12.3 78 104-183 464-541 (697)
240 KOG2796 Uncharacterized conser 97.1 0.032 7E-07 43.4 13.0 107 74-180 181-296 (366)
241 PF05843 Suf: Suppressor of fo 97.1 0.02 4.3E-07 45.3 12.3 95 76-170 7-104 (280)
242 KOG1585 Protein required for f 97.0 0.055 1.2E-06 41.7 13.7 101 70-170 31-144 (308)
243 PRK04841 transcriptional regul 97.0 0.011 2.4E-07 54.1 12.1 97 71-167 492-604 (903)
244 PF10579 Rapsyn_N: Rapsyn N-te 97.0 0.011 2.4E-07 37.0 8.3 64 68-131 4-72 (80)
245 PF10602 RPN7: 26S proteasome 97.0 0.02 4.3E-07 42.1 11.2 97 70-166 36-143 (177)
246 KOG2396 HAT (Half-A-TPR) repea 97.0 0.032 6.9E-07 46.9 13.2 92 89-180 90-184 (568)
247 PF04184 ST7: ST7 protein; In 97.0 0.023 5E-07 47.7 12.1 95 85-179 215-339 (539)
248 PRK04841 transcriptional regul 97.0 0.019 4.2E-07 52.5 12.8 96 72-167 533-643 (903)
249 PLN03077 Protein ECB2; Provisi 96.9 0.027 5.8E-07 51.4 13.5 90 72-161 556-650 (857)
250 KOG1586 Protein required for f 96.9 0.12 2.5E-06 39.7 14.3 99 70-169 34-147 (288)
251 PF09986 DUF2225: Uncharacteri 96.9 0.038 8.3E-07 41.9 11.9 92 78-169 85-198 (214)
252 PLN03077 Protein ECB2; Provisi 96.9 0.036 7.8E-07 50.6 13.7 99 79-179 598-700 (857)
253 KOG2610 Uncharacterized conser 96.8 0.041 8.9E-07 44.3 12.0 115 72-186 105-225 (491)
254 KOG1941 Acetylcholine receptor 96.8 0.009 1.9E-07 48.4 8.3 97 70-166 162-276 (518)
255 PF07079 DUF1347: Protein of u 96.8 0.063 1.4E-06 44.8 13.1 73 109-185 469-545 (549)
256 KOG2471 TPR repeat-containing 96.8 0.0021 4.5E-08 53.7 4.5 77 73-149 286-382 (696)
257 KOG1585 Protein required for f 96.8 0.04 8.8E-07 42.3 10.9 121 74-197 114-249 (308)
258 KOG3081 Vesicle coat complex C 96.7 0.041 8.8E-07 42.8 10.7 90 84-173 187-279 (299)
259 KOG4507 Uncharacterized conser 96.7 0.019 4.2E-07 49.2 9.7 117 81-197 224-347 (886)
260 PRK10941 hypothetical protein; 96.7 0.035 7.6E-07 43.6 10.6 78 68-145 179-258 (269)
261 COG4700 Uncharacterized protei 96.6 0.11 2.5E-06 38.4 12.2 105 82-186 68-176 (251)
262 PF05843 Suf: Suppressor of fo 96.6 0.11 2.4E-06 41.1 12.9 104 72-175 37-146 (280)
263 PF14561 TPR_20: Tetratricopep 96.6 0.056 1.2E-06 35.0 9.4 77 89-180 7-86 (90)
264 PF10300 DUF3808: Protein of u 96.6 0.057 1.2E-06 45.9 11.9 95 83-177 246-346 (468)
265 PF13374 TPR_10: Tetratricopep 96.4 0.0081 1.8E-07 32.4 4.3 29 103-131 3-31 (42)
266 PF09986 DUF2225: Uncharacteri 96.3 0.053 1.2E-06 41.1 9.4 77 67-143 122-207 (214)
267 PF03704 BTAD: Bacterial trans 96.3 0.068 1.5E-06 37.6 9.5 63 68-130 60-124 (146)
268 COG3629 DnrI DNA-binding trans 96.3 0.17 3.7E-06 39.9 12.2 82 85-166 136-217 (280)
269 KOG1915 Cell cycle control pro 96.3 0.34 7.4E-06 40.9 14.2 99 72-170 75-175 (677)
270 KOG1915 Cell cycle control pro 96.2 0.2 4.3E-06 42.2 12.7 129 71-199 405-535 (677)
271 PF09613 HrpB1_HrpK: Bacterial 96.2 0.29 6.3E-06 35.2 14.5 111 70-182 10-122 (160)
272 KOG3824 Huntingtin interacting 96.2 0.028 6.1E-07 44.6 7.3 79 67-145 113-193 (472)
273 PF12862 Apc5: Anaphase-promot 96.2 0.05 1.1E-06 35.5 7.6 51 81-131 9-70 (94)
274 KOG1308 Hsp70-interacting prot 96.0 0.0026 5.6E-08 50.8 0.8 58 113-170 125-182 (377)
275 PF13374 TPR_10: Tetratricopep 95.9 0.022 4.8E-07 30.6 4.1 31 136-166 2-32 (42)
276 PF04910 Tcf25: Transcriptiona 95.8 0.098 2.1E-06 42.9 9.4 73 99-171 37-139 (360)
277 PF09613 HrpB1_HrpK: Bacterial 95.8 0.29 6.3E-06 35.2 10.4 83 102-184 10-92 (160)
278 KOG2610 Uncharacterized conser 95.7 0.079 1.7E-06 42.7 8.0 90 73-162 140-235 (491)
279 PF02259 FAT: FAT domain; Int 95.4 0.79 1.7E-05 36.9 13.4 116 68-183 144-305 (352)
280 KOG4814 Uncharacterized conser 95.4 0.15 3.3E-06 44.3 9.2 80 100-179 352-437 (872)
281 PRK13184 pknD serine/threonine 95.4 0.26 5.7E-06 45.3 11.2 113 73-186 478-602 (932)
282 KOG2053 Mitochondrial inherita 95.4 0.15 3.3E-06 45.7 9.3 97 72-170 45-144 (932)
283 KOG1070 rRNA processing protei 95.3 0.57 1.2E-05 44.4 13.0 96 71-166 1565-1664(1710)
284 PF07720 TPR_3: Tetratricopept 95.3 0.068 1.5E-06 28.3 4.5 33 137-169 2-36 (36)
285 KOG3364 Membrane protein invol 95.3 0.063 1.4E-06 37.4 5.4 69 75-143 37-112 (149)
286 PF12862 Apc5: Anaphase-promot 95.2 0.28 6.1E-06 31.9 8.3 57 112-168 8-73 (94)
287 PF04184 ST7: ST7 protein; In 95.2 0.35 7.5E-06 41.0 10.4 105 73-177 262-387 (539)
288 PF10516 SHNi-TPR: SHNi-TPR; 95.1 0.043 9.2E-07 29.4 3.4 29 137-165 2-30 (38)
289 KOG1070 rRNA processing protei 95.1 0.66 1.4E-05 44.0 12.8 101 77-177 1537-1641(1710)
290 PF02259 FAT: FAT domain; Int 95.0 0.75 1.6E-05 37.0 12.1 99 70-168 184-341 (352)
291 KOG2422 Uncharacterized conser 94.9 1.9 4.1E-05 37.3 14.0 72 67-138 288-379 (665)
292 PF10373 EST1_DNA_bind: Est1 D 94.8 0.18 3.8E-06 39.4 7.7 62 121-182 1-62 (278)
293 PF10255 Paf67: RNA polymerase 94.8 0.27 5.8E-06 40.9 8.8 124 77-200 129-266 (404)
294 COG4976 Predicted methyltransf 94.8 0.075 1.6E-06 40.5 5.1 57 79-135 4-62 (287)
295 PF13281 DUF4071: Domain of un 94.7 1.8 3.8E-05 35.8 13.2 105 74-178 183-347 (374)
296 COG5191 Uncharacterized conser 94.5 0.11 2.4E-06 41.4 5.7 80 99-178 104-184 (435)
297 PF04212 MIT: MIT (microtubule 94.5 0.51 1.1E-05 28.7 7.6 32 67-98 2-33 (69)
298 PF10516 SHNi-TPR: SHNi-TPR; 94.5 0.079 1.7E-06 28.4 3.4 30 103-132 2-31 (38)
299 PF07721 TPR_4: Tetratricopept 94.4 0.066 1.4E-06 25.9 2.9 24 137-160 2-25 (26)
300 PF04910 Tcf25: Transcriptiona 94.4 1.3 2.7E-05 36.5 11.9 91 70-160 40-163 (360)
301 PRK15095 FKBP-type peptidyl-pr 94.3 0.043 9.4E-07 39.5 2.9 32 1-32 43-75 (156)
302 KOG2047 mRNA splicing factor [ 94.3 1.5 3.3E-05 38.5 12.3 98 70-167 425-542 (835)
303 PF12968 DUF3856: Domain of Un 94.0 1.3 2.8E-05 30.4 9.4 63 69-131 54-129 (144)
304 PF10602 RPN7: 26S proteasome 93.8 1.9 4.2E-05 31.6 14.3 69 99-167 33-104 (177)
305 TIGR03504 FimV_Cterm FimV C-te 93.7 0.33 7.1E-06 26.9 5.0 25 140-164 3-27 (44)
306 KOG3617 WD40 and TPR repeat-co 93.7 0.47 1E-05 42.8 8.3 96 68-163 856-994 (1416)
307 KOG2300 Uncharacterized conser 93.6 4.1 8.8E-05 34.8 13.4 95 68-166 365-475 (629)
308 COG4649 Uncharacterized protei 93.6 2.1 4.6E-05 31.5 12.7 105 72-177 96-207 (221)
309 COG3914 Spy Predicted O-linked 93.4 2.3 5E-05 36.9 11.7 102 78-179 75-185 (620)
310 PF07720 TPR_3: Tetratricopept 93.4 0.38 8.3E-06 25.4 4.7 32 103-134 2-35 (36)
311 KOG0686 COP9 signalosome, subu 93.4 0.92 2E-05 37.5 9.0 92 72-163 152-256 (466)
312 PF06957 COPI_C: Coatomer (COP 93.3 3.1 6.7E-05 34.9 12.3 112 66-177 200-341 (422)
313 PF07079 DUF1347: Protein of u 93.3 0.74 1.6E-05 38.7 8.5 58 70-128 462-521 (549)
314 TIGR02561 HrpB1_HrpK type III 93.2 2.2 4.8E-05 30.4 9.7 83 71-153 11-95 (153)
315 COG0790 FOG: TPR repeat, SEL1 93.2 3.4 7.4E-05 32.5 13.7 102 72-177 111-230 (292)
316 PF10952 DUF2753: Protein of u 93.1 1.3 2.9E-05 30.4 8.1 99 72-176 3-122 (140)
317 COG3898 Uncharacterized membra 93.1 2 4.4E-05 35.6 10.6 89 79-168 197-295 (531)
318 KOG0530 Protein farnesyltransf 93.1 3.5 7.5E-05 32.4 11.4 106 80-185 53-162 (318)
319 PF11817 Foie-gras_1: Foie gra 93.1 1.1 2.4E-05 34.7 9.1 64 99-162 175-244 (247)
320 KOG1550 Extracellular protein 93.1 2.7 5.8E-05 36.7 12.2 92 73-166 291-394 (552)
321 PF08424 NRDE-2: NRDE-2, neces 93.1 3.9 8.5E-05 33.0 12.4 88 92-179 7-108 (321)
322 cd02682 MIT_AAA_Arch MIT: doma 93.0 1.1 2.3E-05 28.0 7.1 31 68-98 4-34 (75)
323 cd02683 MIT_1 MIT: domain cont 93.0 0.93 2E-05 28.4 6.9 30 69-98 5-34 (77)
324 KOG2047 mRNA splicing factor [ 93.0 6.2 0.00013 34.9 15.3 116 72-187 389-528 (835)
325 PF14863 Alkyl_sulf_dimr: Alky 92.8 0.81 1.8E-05 32.3 7.1 52 135-186 69-120 (141)
326 KOG0529 Protein geranylgeranyl 92.7 5.2 0.00011 33.3 14.6 112 75-186 33-161 (421)
327 PF07721 TPR_4: Tetratricopept 92.6 0.18 3.9E-06 24.3 2.6 24 103-126 2-25 (26)
328 PHA02537 M terminase endonucle 92.6 3.2 6.9E-05 31.9 10.6 105 81-186 94-227 (230)
329 COG3947 Response regulator con 92.5 0.89 1.9E-05 36.1 7.5 61 102-162 279-339 (361)
330 COG3898 Uncharacterized membra 92.3 5.8 0.00013 33.0 12.2 91 75-165 125-217 (531)
331 cd02678 MIT_VPS4 MIT: domain c 92.3 1.7 3.6E-05 27.0 7.4 32 67-98 3-34 (75)
332 COG2976 Uncharacterized protei 92.2 1.4 3.1E-05 32.8 8.0 66 71-136 127-193 (207)
333 PF10345 Cohesin_load: Cohesin 92.2 7.8 0.00017 34.3 15.1 114 69-183 58-188 (608)
334 PF11207 DUF2989: Protein of u 92.1 1.3 2.8E-05 33.2 7.8 53 102-155 141-197 (203)
335 PF10255 Paf67: RNA polymerase 92.0 0.31 6.8E-06 40.5 4.8 61 105-165 125-193 (404)
336 cd02681 MIT_calpain7_1 MIT: do 91.9 0.49 1.1E-05 29.6 4.6 30 69-98 5-34 (76)
337 COG2912 Uncharacterized conser 91.9 1.8 3.8E-05 34.0 8.6 71 75-145 186-258 (269)
338 PF11817 Foie-gras_1: Foie gra 91.6 3.5 7.6E-05 31.9 10.1 56 74-129 182-245 (247)
339 cd02684 MIT_2 MIT: domain cont 91.5 1.5 3.4E-05 27.2 6.6 32 67-98 3-34 (75)
340 cd02656 MIT MIT: domain contai 91.4 2.2 4.8E-05 26.3 7.5 31 68-98 4-34 (75)
341 COG3118 Thioredoxin domain-con 91.3 4.3 9.3E-05 32.3 10.2 76 86-161 118-193 (304)
342 PF13281 DUF4071: Domain of un 91.3 7.4 0.00016 32.2 14.3 84 100-183 139-230 (374)
343 COG0790 FOG: TPR repeat, SEL1 91.2 4.9 0.00011 31.6 10.9 81 86-169 171-270 (292)
344 smart00745 MIT Microtubule Int 91.2 2.4 5.1E-05 26.3 7.4 32 67-98 5-36 (77)
345 PRK15180 Vi polysaccharide bio 91.1 4.8 0.0001 34.4 10.8 120 78-198 297-418 (831)
346 KOG3617 WD40 and TPR repeat-co 91.1 2.5 5.3E-05 38.5 9.5 67 100-166 856-942 (1416)
347 PF08631 SPO22: Meiosis protei 91.0 6.5 0.00014 31.0 14.9 96 81-176 4-127 (278)
348 KOG1310 WD40 repeat protein [G 90.5 1.8 4E-05 37.2 7.9 91 99-189 371-464 (758)
349 KOG1839 Uncharacterized protei 90.0 1.9 4.1E-05 40.6 8.2 99 68-166 971-1087(1236)
350 COG4455 ImpE Protein of avirul 90.0 4.8 0.0001 30.8 9.0 60 111-170 10-69 (273)
351 PF04781 DUF627: Protein of un 89.9 4.4 9.5E-05 27.3 9.5 72 108-179 2-87 (111)
352 cd02680 MIT_calpain7_2 MIT: do 89.9 0.82 1.8E-05 28.5 4.2 31 68-98 4-34 (75)
353 PF10373 EST1_DNA_bind: Est1 D 89.9 1.4 2.9E-05 34.4 6.6 60 89-148 1-62 (278)
354 PF10345 Cohesin_load: Cohesin 89.6 14 0.00031 32.7 14.7 91 70-160 301-428 (608)
355 PF15015 NYD-SP12_N: Spermatog 89.6 3.3 7.2E-05 34.7 8.5 51 141-191 233-283 (569)
356 COG5159 RPN6 26S proteasome re 89.5 6 0.00013 31.6 9.5 46 74-119 7-62 (421)
357 TIGR03504 FimV_Cterm FimV C-te 89.2 0.97 2.1E-05 25.0 3.8 26 106-131 3-28 (44)
358 COG3914 Spy Predicted O-linked 89.1 9 0.00019 33.4 11.0 98 89-187 50-159 (620)
359 KOG1550 Extracellular protein 89.0 9.1 0.0002 33.5 11.5 94 72-167 327-428 (552)
360 PF11846 DUF3366: Domain of un 89.0 3 6.5E-05 30.9 7.5 50 119-169 128-177 (193)
361 PF08424 NRDE-2: NRDE-2, neces 88.5 4.2 9E-05 32.9 8.6 76 123-199 6-93 (321)
362 PF10579 Rapsyn_N: Rapsyn N-te 88.3 4.6 0.0001 25.4 7.4 61 105-165 9-72 (80)
363 PRK10737 FKBP-type peptidyl-pr 88.2 0.5 1.1E-05 35.3 2.8 32 1-32 40-72 (196)
364 PRK13184 pknD serine/threonine 87.7 3.8 8.2E-05 38.0 8.5 95 85-181 534-639 (932)
365 KOG0530 Protein farnesyltransf 87.6 8.7 0.00019 30.3 9.2 88 111-198 52-140 (318)
366 COG1047 SlpA FKBP-type peptidy 87.6 0.67 1.5E-05 33.8 3.1 32 1-32 41-73 (174)
367 PF12652 CotJB: CotJB protein; 87.5 3.3 7.1E-05 26.0 5.8 51 147-201 6-56 (78)
368 KOG0985 Vesicle coat protein c 87.2 11 0.00023 35.5 10.7 106 72-183 1196-1326(1666)
369 PF14863 Alkyl_sulf_dimr: Alky 87.0 2.1 4.6E-05 30.2 5.3 51 102-152 70-120 (141)
370 PF11207 DUF2989: Protein of u 86.9 1.9 4.1E-05 32.3 5.2 53 69-122 140-198 (203)
371 smart00386 HAT HAT (Half-A-TPR 86.8 2.5 5.3E-05 20.6 4.3 26 117-142 2-27 (33)
372 KOG1839 Uncharacterized protei 86.8 6.6 0.00014 37.3 9.5 98 68-165 930-1044(1236)
373 KOG2422 Uncharacterized conser 86.6 15 0.00032 32.1 10.8 107 74-180 239-387 (665)
374 PF09670 Cas_Cas02710: CRISPR- 86.6 17 0.00037 30.1 11.8 97 70-166 131-271 (379)
375 TIGR02561 HrpB1_HrpK type III 86.3 10 0.00022 27.1 12.9 81 104-184 12-92 (153)
376 KOG1258 mRNA processing protei 85.8 23 0.00051 30.9 14.5 114 70-183 297-413 (577)
377 KOG2581 26S proteasome regulat 85.7 20 0.00044 30.0 11.6 72 99-170 206-281 (493)
378 KOG2300 Uncharacterized conser 85.6 23 0.00049 30.5 11.6 92 69-160 45-151 (629)
379 KOG2041 WD40 repeat protein [G 85.5 5.8 0.00012 35.5 8.0 78 83-160 773-876 (1189)
380 smart00386 HAT HAT (Half-A-TPR 85.5 3 6.4E-05 20.3 4.5 31 150-180 1-31 (33)
381 cd02677 MIT_SNX15 MIT: domain 85.0 7.1 0.00015 24.3 8.4 32 67-98 3-34 (75)
382 KOG0529 Protein geranylgeranyl 84.9 21 0.00046 29.8 10.6 102 82-183 87-196 (421)
383 KOG0549 FKBP-type peptidyl-pro 84.7 1.1 2.5E-05 32.8 3.1 32 1-32 7-39 (188)
384 KOG0292 Vesicle coat complex C 84.2 12 0.00027 34.4 9.6 112 66-177 987-1125(1202)
385 KOG2114 Vacuolar assembly/sort 84.1 6 0.00013 35.9 7.7 30 69-98 367-396 (933)
386 COG2909 MalT ATP-dependent tra 84.1 35 0.00075 31.5 16.0 104 63-166 408-527 (894)
387 cd02682 MIT_AAA_Arch MIT: doma 83.6 6.9 0.00015 24.4 5.8 16 156-171 33-48 (75)
388 PF12854 PPR_1: PPR repeat 83.3 3.8 8.2E-05 21.0 4.0 26 135-160 6-31 (34)
389 KOG2561 Adaptor protein NUB1, 82.5 20 0.00043 30.4 9.6 99 67-165 160-296 (568)
390 PF04053 Coatomer_WDAD: Coatom 82.2 24 0.00053 30.0 10.4 29 100-128 345-373 (443)
391 KOG4563 Cell cycle-regulated h 81.7 9.5 0.00021 31.3 7.4 59 65-123 36-104 (400)
392 KOG0889 Histone acetyltransfer 81.0 33 0.00073 36.4 12.0 86 99-185 2809-2902(3550)
393 KOG0985 Vesicle coat protein c 79.9 36 0.00077 32.3 10.9 77 99-180 1101-1180(1666)
394 COG4941 Predicted RNA polymera 79.8 20 0.00043 29.4 8.5 82 99-180 326-409 (415)
395 PF08311 Mad3_BUB1_I: Mad3/BUB 79.3 18 0.00038 24.9 7.9 74 84-163 40-126 (126)
396 COG3629 DnrI DNA-binding trans 79.1 15 0.00033 29.1 7.6 63 69-131 152-216 (280)
397 cd02679 MIT_spastin MIT: domai 78.9 6 0.00013 24.9 4.4 32 67-98 5-36 (79)
398 TIGR02710 CRISPR-associated pr 78.7 37 0.0008 28.3 11.7 55 72-126 132-195 (380)
399 TIGR00115 tig trigger factor. 78.6 6.2 0.00013 33.0 5.8 50 1-55 182-232 (408)
400 COG3947 Response regulator con 77.7 33 0.00071 27.6 9.0 77 52-128 259-339 (361)
401 PF01535 PPR: PPR repeat; Int 77.7 4.7 0.0001 19.4 3.1 25 105-129 3-27 (31)
402 PF01239 PPTA: Protein prenylt 77.4 6.7 0.00015 19.4 3.7 27 121-147 2-28 (31)
403 cd02683 MIT_1 MIT: domain cont 77.4 12 0.00025 23.4 5.4 16 154-169 31-46 (77)
404 COG4649 Uncharacterized protei 77.0 19 0.00042 26.7 7.1 72 76-148 138-212 (221)
405 COG5191 Uncharacterized conser 77.0 4.4 9.6E-05 32.7 4.1 67 75-141 112-181 (435)
406 COG1747 Uncharacterized N-term 75.9 53 0.0012 28.6 10.4 35 144-178 213-247 (711)
407 KOG3783 Uncharacterized conser 75.0 54 0.0012 28.5 10.2 67 103-169 450-524 (546)
408 KOG2396 HAT (Half-A-TPR) repea 74.3 24 0.00052 30.4 7.9 58 83-140 118-178 (568)
409 PRK15180 Vi polysaccharide bio 74.2 8.6 0.00019 33.0 5.3 94 76-169 329-424 (831)
410 PF02184 HAT: HAT (Half-A-TPR) 73.1 10 0.00022 19.4 3.5 26 117-143 2-27 (32)
411 PF04053 Coatomer_WDAD: Coatom 72.7 47 0.001 28.3 9.5 32 133-164 344-375 (443)
412 KOG3616 Selective LIM binding 71.4 20 0.00044 32.6 7.1 21 141-161 770-790 (1636)
413 PF00244 14-3-3: 14-3-3 protei 71.1 22 0.00047 27.4 6.7 43 87-129 143-196 (236)
414 COG2909 MalT ATP-dependent tra 70.7 72 0.0016 29.5 10.4 82 70-151 458-552 (894)
415 PF13041 PPR_2: PPR repeat fam 70.4 16 0.00034 20.1 6.1 30 103-132 4-33 (50)
416 KOG2041 WD40 repeat protein [G 69.9 33 0.00072 31.0 8.0 72 84-162 748-822 (1189)
417 KOG0546 HSP90 co-chaperone CPR 69.5 4.1 8.9E-05 33.2 2.4 52 99-150 306-357 (372)
418 COG5091 SGT1 Suppressor of G2 69.3 44 0.00094 26.5 7.8 88 80-168 5-111 (368)
419 KOG1914 mRNA cleavage and poly 69.1 41 0.00089 29.4 8.2 72 94-166 10-83 (656)
420 TIGR00756 PPR pentatricopeptid 69.1 12 0.00026 18.2 3.8 26 105-130 3-28 (35)
421 PRK01490 tig trigger factor; P 68.5 15 0.00033 30.9 5.8 50 1-55 193-243 (435)
422 PF15469 Sec5: Exocyst complex 68.1 35 0.00076 24.9 7.1 21 78-98 94-114 (182)
423 PF04212 MIT: MIT (microtubule 68.1 13 0.00029 22.3 4.1 22 143-164 12-33 (69)
424 COG4455 ImpE Protein of avirul 67.6 40 0.00087 26.0 7.1 99 78-176 9-127 (273)
425 COG5159 RPN6 26S proteasome re 66.4 51 0.0011 26.6 7.7 93 75-167 130-237 (421)
426 KOG3783 Uncharacterized conser 66.3 87 0.0019 27.3 9.6 94 72-165 269-375 (546)
427 PF08238 Sel1: Sel1 repeat; I 66.3 16 0.00035 18.6 3.7 13 152-164 24-36 (39)
428 PF02064 MAS20: MAS20 protein 66.2 21 0.00046 24.5 5.1 27 142-168 69-95 (121)
429 PF10938 YfdX: YfdX protein; 66.1 46 0.001 23.8 8.5 62 69-130 74-145 (155)
430 COG4259 Uncharacterized protei 65.8 29 0.00062 23.1 5.3 44 133-176 69-112 (121)
431 PF04190 DUF410: Protein of un 65.7 63 0.0014 25.3 10.9 91 70-160 10-114 (260)
432 PF07163 Pex26: Pex26 protein; 65.5 69 0.0015 25.6 10.4 98 72-170 37-151 (309)
433 cd02681 MIT_calpain7_1 MIT: do 65.1 13 0.00029 23.1 3.6 24 142-165 12-35 (76)
434 KOG4459 Membrane-associated pr 64.4 65 0.0014 27.4 8.4 113 71-183 32-180 (471)
435 KOG3616 Selective LIM binding 64.3 18 0.00039 32.9 5.4 84 76-159 712-847 (1636)
436 COG5600 Transcription-associat 64.2 24 0.00052 29.2 5.7 63 106-168 181-252 (413)
437 PF12739 TRAPPC-Trs85: ER-Golg 63.3 90 0.002 26.2 12.4 95 71-165 209-329 (414)
438 KOG1464 COP9 signalosome, subu 63.0 32 0.0007 27.4 6.1 49 82-130 39-93 (440)
439 PRK11619 lytic murein transgly 62.8 1.1E+02 0.0023 27.6 10.1 57 108-164 318-374 (644)
440 smart00671 SEL1 Sel1-like repe 62.6 18 0.00039 18.0 4.3 14 151-164 20-33 (36)
441 PF13812 PPR_3: Pentatricopept 62.4 17 0.00038 17.7 4.0 27 104-130 3-29 (34)
442 KOG1463 26S proteasome regulat 62.3 38 0.00083 27.8 6.5 92 75-166 133-239 (411)
443 smart00745 MIT Microtubule Int 62.1 34 0.00074 20.9 6.0 14 155-168 34-47 (77)
444 PF10952 DUF2753: Protein of u 62.0 45 0.00098 23.1 5.9 64 105-168 4-86 (140)
445 PF07219 HemY_N: HemY protein 62.0 44 0.00095 22.2 6.8 47 104-150 61-107 (108)
446 PRK15490 Vi polysaccharide bio 61.8 91 0.002 27.6 9.2 79 80-160 18-98 (578)
447 KOG1914 mRNA cleavage and poly 61.1 45 0.00098 29.2 7.0 83 81-165 30-116 (656)
448 KOG1463 26S proteasome regulat 60.7 95 0.0021 25.6 10.2 109 72-183 211-331 (411)
449 COG3014 Uncharacterized protei 60.2 98 0.0021 25.6 10.3 109 74-183 62-240 (449)
450 PF09205 DUF1955: Domain of un 58.0 65 0.0014 22.8 7.9 41 124-164 108-148 (161)
451 PF04190 DUF410: Protein of un 56.6 94 0.002 24.3 8.4 63 69-131 89-170 (260)
452 cd00280 TRFH Telomeric Repeat 56.4 25 0.00055 26.1 4.3 38 143-181 118-155 (200)
453 PF13041 PPR_2: PPR repeat fam 54.9 34 0.00074 18.7 5.9 37 135-171 2-40 (50)
454 PF07219 HemY_N: HemY protein 54.6 61 0.0013 21.5 7.2 52 65-116 54-107 (108)
455 PF05053 Menin: Menin; InterP 54.5 32 0.0007 30.1 5.2 29 135-163 317-345 (618)
456 cd02679 MIT_spastin MIT: domai 54.3 30 0.00065 21.8 3.9 34 116-164 3-36 (79)
457 KOG0739 AAA+-type ATPase [Post 53.7 71 0.0015 26.0 6.6 33 66-98 6-38 (439)
458 cd02678 MIT_VPS4 MIT: domain c 53.4 51 0.0011 20.2 6.0 13 155-167 32-44 (75)
459 cd02656 MIT MIT: domain contai 53.3 50 0.0011 20.1 5.9 13 156-168 33-45 (75)
460 PF08969 USP8_dimer: USP8 dime 52.8 68 0.0015 21.5 5.9 40 59-98 27-66 (115)
461 cd02684 MIT_2 MIT: domain cont 52.4 54 0.0012 20.3 5.7 17 148-164 18-34 (75)
462 KOG4056 Translocase of outer m 51.7 43 0.00094 23.5 4.6 36 142-177 87-122 (143)
463 smart00101 14_3_3 14-3-3 homol 50.0 89 0.0019 24.3 6.6 11 88-98 146-156 (244)
464 PF13226 DUF4034: Domain of un 49.3 1.3E+02 0.0029 23.9 9.6 107 76-183 6-146 (277)
465 PF08311 Mad3_BUB1_I: Mad3/BUB 49.2 79 0.0017 21.7 5.7 42 88-129 81-126 (126)
466 PF02064 MAS20: MAS20 protein 48.8 86 0.0019 21.5 6.1 28 71-98 64-91 (121)
467 KOG0890 Protein kinase of the 48.2 2.5E+02 0.0054 29.5 10.4 103 68-170 1668-1789(2382)
468 PF11846 DUF3366: Domain of un 48.2 78 0.0017 23.2 6.0 44 90-133 131-175 (193)
469 COG5107 RNA14 Pre-mRNA 3'-end 47.2 1E+02 0.0022 26.6 6.8 68 93-163 291-360 (660)
470 KOG4563 Cell cycle-regulated h 47.2 34 0.00073 28.3 4.0 59 102-160 41-107 (400)
471 PF12753 Nro1: Nuclear pore co 46.9 30 0.00066 28.8 3.8 32 119-152 335-366 (404)
472 cd07642 BAR_ASAP2 The Bin/Amph 46.8 1.3E+02 0.0028 23.0 10.2 53 102-154 25-80 (215)
473 PF03745 DUF309: Domain of unk 46.7 61 0.0013 19.2 6.9 49 75-123 4-60 (62)
474 PF14689 SPOB_a: Sensor_kinase 46.3 52 0.0011 19.4 3.9 23 139-161 26-48 (62)
475 KOG3807 Predicted membrane pro 46.1 1.7E+02 0.0037 24.2 10.1 54 106-159 279-334 (556)
476 PF09205 DUF1955: Domain of un 45.2 1.1E+02 0.0024 21.7 11.3 45 139-183 88-133 (161)
477 PRK15490 Vi polysaccharide bio 44.8 2.3E+02 0.0049 25.2 10.0 56 114-169 20-75 (578)
478 KOG1497 COP9 signalosome, subu 44.1 1.8E+02 0.0039 23.9 16.4 84 99-183 100-193 (399)
479 PF14858 DUF4486: Domain of un 43.2 1.9E+02 0.0041 25.4 8.1 56 75-130 156-225 (542)
480 PF09797 NatB_MDM20: N-acetylt 43.1 77 0.0017 26.0 5.8 46 116-161 197-242 (365)
481 KOG3540 Beta amyloid precursor 42.9 2.2E+02 0.0048 24.6 10.4 68 101-169 312-381 (615)
482 KOG3677 RNA polymerase I-assoc 42.6 65 0.0014 27.3 5.1 96 106-201 276-375 (525)
483 PRK15326 type III secretion sy 42.1 88 0.0019 19.8 6.1 30 152-181 23-52 (80)
484 TIGR00985 3a0801s04tom mitocho 41.4 78 0.0017 22.6 4.8 35 142-176 96-131 (148)
485 cd00633 Secretoglobin Secretog 41.2 78 0.0017 18.9 4.4 46 155-200 15-60 (67)
486 PF12583 TPPII_N: Tripeptidyl 40.5 1.3E+02 0.0028 21.1 6.3 36 113-148 87-122 (139)
487 PF08626 TRAPPC9-Trs120: Trans 40.0 67 0.0014 31.1 5.5 48 68-115 240-295 (1185)
488 KOG1497 COP9 signalosome, subu 39.9 2.1E+02 0.0046 23.5 9.1 96 70-165 103-213 (399)
489 KOG2582 COP9 signalosome, subu 39.7 1.6E+02 0.0035 24.6 6.8 83 70-152 183-274 (422)
490 PF08771 Rapamycin_bind: Rapam 39.7 69 0.0015 21.1 4.1 56 109-164 21-76 (100)
491 PF10938 YfdX: YfdX protein; 39.5 1.4E+02 0.0031 21.3 10.1 93 72-164 4-145 (155)
492 cd02677 MIT_SNX15 MIT: domain 39.0 95 0.0021 19.2 5.7 16 150-165 20-35 (75)
493 COG5600 Transcription-associat 38.7 2.1E+02 0.0046 23.9 7.3 60 75-134 182-252 (413)
494 COG2015 Alkyl sulfatase and re 38.4 1.3E+02 0.0028 26.1 6.3 58 139-198 455-512 (655)
495 PF10366 Vps39_1: Vacuolar sor 38.3 52 0.0011 21.9 3.4 30 67-96 36-65 (108)
496 KOG2581 26S proteasome regulat 38.0 1.7E+02 0.0038 24.8 6.8 54 82-135 221-280 (493)
497 PF15469 Sec5: Exocyst complex 37.2 1.5E+02 0.0033 21.5 6.0 41 147-187 97-141 (182)
498 KOG1464 COP9 signalosome, subu 37.0 2.2E+02 0.0048 22.9 8.7 110 75-184 150-284 (440)
499 PF04010 DUF357: Protein of un 36.9 1E+02 0.0023 19.1 5.1 35 62-96 27-61 (75)
500 KOG0276 Vesicle coat complex C 36.4 90 0.0019 27.9 5.2 50 111-165 646-695 (794)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-41 Score=266.61 Aligned_cols=202 Identities=44% Similarity=0.720 Sum_probs=194.8
Q ss_pred CcchHHHHHHhccccccEEEEEecccc-cc-cCCcccccCCCceEEEEEEEcccc-CCCCccCCCHHHHHHHHHHHHHHh
Q 046569 1 NVNEGLERAIMTMKKEEQATVTISAEY-LC-GHEVSELVCANSVLYYEVTLIDFT-KEKPFWKMDTHEKIEACERKKHDG 77 (202)
Q Consensus 1 ~v~~~~~~~~~~m~~ge~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~i~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~g 77 (202)
+||+||++|+..|+.||++.|.|++.| || ..+.++.|||++++.|+|+|.++. .....|.+...+++..|...++.|
T Consensus 136 ~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~G 215 (397)
T KOG0543|consen 136 DVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERG 215 (397)
T ss_pred chhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhh
Confidence 489999999999999999999999999 99 566899999999999999999999 788899999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHH
Q 046569 78 NLLFRAGKYWRASKKYEKATN-----------------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALF 140 (202)
Q Consensus 78 ~~~~~~~~~~~A~~~y~~al~-----------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 140 (202)
|.+|+.|+|..|...|.+|++ .....++.|++.||+++++|..|+..|+++|+++|+|++++|
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 999999999999999999998 566778999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 046569 141 RRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSMLSKMG 202 (202)
Q Consensus 141 ~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 202 (202)
++|.++..+|+|+.|+.+|+++++++|+|.++...+..|.++.+++.++++++|++||++++
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999874
No 2
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.9e-27 Score=173.81 Aligned_cols=197 Identities=27% Similarity=0.362 Sum_probs=176.2
Q ss_pred chHHHHHHhccccccEEEEEecccccccCC--------------------------------------cccccCCCceEE
Q 046569 3 NEGLERAIMTMKKEEQATVTISAEYLCGHE--------------------------------------VSELVCANSVLY 44 (202)
Q Consensus 3 ~~~~~~~~~~m~~ge~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~ 44 (202)
.++||+++.+|.++|++.|.+.....+.++ .......++++.
T Consensus 69 L~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~ 148 (329)
T KOG0545|consen 69 LEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLV 148 (329)
T ss_pred cHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceE
Confidence 368999999999999999999866533333 011223467899
Q ss_pred EEEEEccccC----CCCccCCCHHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--------------------hH
Q 046569 45 YEVTLIDFTK----EKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--------------------GL 100 (202)
Q Consensus 45 ~~i~l~~~~~----~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--------------------~~ 100 (202)
|.++|..+.. ....|.++.+++.+....+.++||.+|+.|+|.+|...|..||. ..
T Consensus 149 FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~ 228 (329)
T KOG0545|consen 149 FVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKM 228 (329)
T ss_pred eehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHh
Confidence 9999998874 35679999999999999999999999999999999999999987 56
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHH
Q 046569 101 RLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNN-RDVKLVYMEL 179 (202)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~ 179 (202)
..+++.|.+.|++..|+|.+++++|+.+|+.+|.+.++||++|.++...++.++|.++|.++++++|.- +.+...+..+
T Consensus 229 ~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~l 308 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLL 308 (329)
T ss_pred hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 778999999999999999999999999999999999999999999999999999999999999999986 6788899999
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 046569 180 KENQREYAKYQAEIFGSMLS 199 (202)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~f~ 199 (202)
..++++.+..+|-.|++||+
T Consensus 309 e~r~~ek~~edr~~~~kmfs 328 (329)
T KOG0545|consen 309 ENRMAEKQEEDRLRCRKMFS 328 (329)
T ss_pred HHHHHHhhhHHHHHHHHhcC
Confidence 99999999999999999997
No 3
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=149.81 Aligned_cols=123 Identities=30% Similarity=0.385 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHH
Q 046569 65 EKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRR 142 (202)
Q Consensus 65 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 142 (202)
+....|..++.+||.+.+.++|.+|+..|++||. |.++..|.|+|.+|.++|.|+.|+++|..+|.+||.+.++|.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6778899999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 143 SQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
|.+|+.+|++++|++.|+++++++|+|...+..|...+..+.+..
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999888876543
No 4
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=2.2e-18 Score=125.22 Aligned_cols=124 Identities=35% Similarity=0.490 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHH
Q 046569 66 KIEACERKKHDGNLLFRAGKYWRASKKYEKATN-------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKA 138 (202)
Q Consensus 66 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 138 (202)
....+..++.+||.+|++|+|.+|...|+.||+ .....+|.|+|.|.++++.|+.|+..|.++|+++|.+.++
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 356788999999999999999999999999999 5677899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 046569 139 LFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKY 189 (202)
Q Consensus 139 ~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 189 (202)
+.++|.+|..+..|++|+.+|+++++++|...+++....++...+...+++
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999999999999999999987777555443
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.74 E-value=1.6e-16 Score=113.20 Aligned_cols=112 Identities=12% Similarity=0.123 Sum_probs=106.6
Q ss_pred HHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCC
Q 046569 73 KKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTS 150 (202)
Q Consensus 73 ~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 150 (202)
+...|..++..|++++|+..|.+++. |.+..++.++|.++..+|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 55789999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 046569 151 ELEKDEADIKRALTIDPNNRDVKLVYMELKENQR 184 (202)
Q Consensus 151 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 184 (202)
++++|+..|++++.+.|+++.....+..+...++
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888776654
No 6
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.8e-17 Score=133.38 Aligned_cols=116 Identities=34% Similarity=0.473 Sum_probs=111.5
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
..+...+..|+.+|+.|+|..|+..|++||. |.++.+|.|+|.||.+++++..|+.+|..+++++|+++++|++.|.+
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~a 435 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAA 435 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 4477788899999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
+..+.+|++|.+.|++++++||++.++...+.++...+
T Consensus 436 l~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 436 LRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988865
No 7
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.72 E-value=2.2e-16 Score=128.21 Aligned_cols=116 Identities=22% Similarity=0.332 Sum_probs=111.1
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
..+..+|+.+|..|+|.+|+..|.+||. |.+..++.++|.+|..+|++++|+.++++++.++|+++.+|+++|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 4577889999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 149 TSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 149 ~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
+|++++|+..|++++.++|+++.+...+..+...++..
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998888653
No 8
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.71 E-value=4.5e-17 Score=127.19 Aligned_cols=121 Identities=25% Similarity=0.343 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHH
Q 046569 63 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALF 140 (202)
Q Consensus 63 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 140 (202)
.++.+..+..++++||.||++|.|++||.+|.+++. |.++..+.|+|.+|++++.|..|..+|..|+.++..+.++|.
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 455678888999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 141 RRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 141 ~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
++|.+...+|...+|..+++.++.|.|++.+.++.++.+....
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~ 212 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR 212 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence 9999999999999999999999999999999999998887644
No 9
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=7.4e-16 Score=124.87 Aligned_cols=107 Identities=35% Similarity=0.420 Sum_probs=99.7
Q ss_pred cCCCHHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh
Q 046569 59 WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNV 136 (202)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 136 (202)
..+..+++.+.|..++.+||.+|++|+|++||.+|+.||+ |+.+..|.|++.||..+|+|++.+++|.++|+++|+++
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~ 183 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV 183 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH
Confidence 4457888999999999999999999999999999999999 77799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 137 KALFRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
+++++|+.++..+|++++|+.+.. ++.+.
T Consensus 184 KAl~RRA~A~E~lg~~~eal~D~t-v~ci~ 212 (606)
T KOG0547|consen 184 KALLRRASAHEQLGKFDEALFDVT-VLCIL 212 (606)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhh-HHHHh
Confidence 999999999999999999999885 44443
No 10
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.66 E-value=1.1e-14 Score=103.23 Aligned_cols=114 Identities=10% Similarity=0.123 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
.+....++..|..++..|++++|.+.|+-... |.+...|+++|.|+..+|+|++|+..|.+++.++|+++.++++.|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 45577889999999999999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046569 145 AYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELK 180 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 180 (202)
|+...|+.+.|...|+.++...-.+++-.....+.+
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~ 147 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAE 147 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence 999999999999999999999855544443333333
No 11
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7e-16 Score=126.05 Aligned_cols=111 Identities=23% Similarity=0.268 Sum_probs=107.5
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
+...++.||..|..|+|+.|+..|++||. |.+..+|.|++.+|.++|+|++|+.+..+.++++|+|+++|.++|.++.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 45678999999999999999999999999 8899999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046569 148 KTSELEKDEADIKRALTIDPNNRDVKLVYMELK 180 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 180 (202)
.+|+|++|+..|.+.++.+|+|+.....++...
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999988
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.65 E-value=1.3e-14 Score=125.96 Aligned_cols=133 Identities=26% Similarity=0.285 Sum_probs=116.7
Q ss_pred ccCCCceEEEEEEEccccCCCCccCCCHHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHH
Q 046569 36 LVCANSVLYYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKL 113 (202)
Q Consensus 36 ~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~ 113 (202)
..|++..+.....+..+.. ...|.++.+++...+..+++.|+.+|+.|+|++|+..|+++|. |. +..|.|+|.||.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~ 171 (615)
T TIGR00990 94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHN 171 (615)
T ss_pred CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHH
Confidence 4456666666555555443 4458888888888999999999999999999999999999999 64 778999999999
Q ss_pred HhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH
Q 046569 114 KLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 114 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
.+|+|++|+.+|+++++++|+++++|+++|.+|..+|++++|+.+|..+..+++.+.
T Consensus 172 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~ 228 (615)
T TIGR00990 172 ALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228 (615)
T ss_pred HhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999999888877553
No 13
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.65 E-value=1.2e-14 Score=102.09 Aligned_cols=115 Identities=20% Similarity=0.225 Sum_probs=107.3
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAY 146 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 146 (202)
.+......|..++..|++++|+..|++++. |.++.++.++|.++..+|++++|+..+++++..+|+++..++.+|.++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 356678999999999999999999999998 889999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 147 LKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
...|++++|+..|+++++++|++.........+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999999999999999999998887777766654
No 14
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.5e-15 Score=118.21 Aligned_cols=129 Identities=25% Similarity=0.367 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHH
Q 046569 66 KIEACERKKHDGNLLFRAGKYWRASKKYEKATN------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKAL 139 (202)
Q Consensus 66 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 139 (202)
.++....+++.||..|++|+|.+|.+.|+.||. ..++.+|.|+|.+..++|+..+|+.+|+.++.++|...+++
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 456778889999999999999999999999999 67888999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046569 140 FRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSML 198 (202)
Q Consensus 140 ~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 198 (202)
.++|.|+..++++++|+++|+++++++.+ .+.++.+......+++. +|+.|-++.
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS---kRkd~ykil 379 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS---KRKDWYKIL 379 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh---hhhhHHHHh
Confidence 99999999999999999999999999977 88888888888887764 455555553
No 15
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.61 E-value=5e-15 Score=117.63 Aligned_cols=103 Identities=19% Similarity=0.149 Sum_probs=99.5
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAY 146 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 146 (202)
.+..+.+.|..+...|++.+|+..|+++++ |.++.+|+++|.++..+|++++|+..|+++++++|++..+++++|.++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 367789999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCHH
Q 046569 147 LKTSELEKDEADIKRALTIDPNNRD 171 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a~~l~p~~~~ 171 (202)
...|++++|+.+|++++.++|+++.
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999973
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.58 E-value=1.1e-14 Score=121.14 Aligned_cols=131 Identities=18% Similarity=0.089 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
+..+.++.+.|+.+-..+.|+.|+..|.+|+. |+.+.++-|+|.+|...|..+.|+++|.++++++|+.+.+|.++|.
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLAN 328 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence 45567888999999999999999999999988 8888888888888888888888888888888888888888888888
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046569 145 AYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSML 198 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 198 (202)
++...|+..+|..+|.+++.+.|+.+.+..++..+++...+....-+ .|++.|
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~-ly~~al 381 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR-LYLKAL 381 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH-HHHHHH
Confidence 88888888888888888888888888888888888887777665555 455443
No 17
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.6e-14 Score=109.26 Aligned_cols=105 Identities=28% Similarity=0.444 Sum_probs=96.3
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFR 141 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 141 (202)
..|..+++.||.+|+.++|..|+..|+++|. ..++.+|.|+|.|.+.+|+|..|+.+|++++.++|.+.+++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 4799999999999999999999999999999 6778899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCHHH
Q 046569 142 RSQAYLKTSELEKDEADIKRALTIDPNNRDV 172 (202)
Q Consensus 142 ~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 172 (202)
-|.|++.+..+++|+..++..+.++-+...+
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~ 189 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKA 189 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 9999999999888888888877776554433
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.57 E-value=4.6e-14 Score=117.63 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=91.0
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
.-+..+.+.|..+-++|++++|+..|+.||. |.+++++.|+|.+|-.+|+-..|+.+|.+|+.++|...+++.++|.+
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi 465 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASI 465 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHH
Confidence 3455666777777777777777777777777 88888888888888888888888888888888888888888888888
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
|...|+..+|+..|+.++++.|+.+.+..++..+..-+
T Consensus 466 ~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 466 YKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred hhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 88888888888888888888888888777777665544
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.50 E-value=8.1e-13 Score=114.83 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=96.2
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
..+..+...|..++..|++++|+..|.++++ |....+|.++|.++..+|++++|+.+++++++++|+++.+++.+|.+
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455677788888888999999999999888 77778888888888888888888888888888888888888888888
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
+...|++++|+.+|++++.++|++..+...++.+...+.+..
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHH
Confidence 888888888888888888888888777777666655444433
No 20
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.50 E-value=1.1e-12 Score=98.23 Aligned_cols=109 Identities=15% Similarity=0.160 Sum_probs=98.5
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHH-HHhcC--HHHHHHHHHHHhhhCCCChHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACK-LKLED--YSEASSLCTKVLELEPLNVKALFRR 142 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~ 142 (202)
..+..+...|..+...|++++|+..|.+++. |.++.++.++|.++ ...|+ +++|...++++++.+|+++.+++.+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L 150 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL 150 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence 4566788999999999999999999999999 99999999999985 67787 5999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 046569 143 SQAYLKTSELEKDEADIKRALTIDPNNRDVKLVY 176 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 176 (202)
|.++...|++++|+..++++++++|.+..-...+
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999999999999999999998875443333
No 21
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.49 E-value=1.1e-13 Score=86.07 Aligned_cols=67 Identities=30% Similarity=0.501 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCC
Q 046569 101 RLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTS-ELEKDEADIKRALTIDP 167 (202)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~a~~l~p 167 (202)
.+.+|.++|.+++..|+|++|+.+|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46789999999999999999999999999999999999999999999999 79999999999999998
No 22
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.48 E-value=1.8e-12 Score=88.60 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=97.6
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GL---RLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALFR 141 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 141 (202)
+..++..|..++..|++++|+..|.+++. |. ...+++.+|.++...|+++.|+..++.++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 35678899999999999999999999998 33 36789999999999999999999999999998875 678999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 142 RSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 142 ~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
+|.++...|++++|...+++++...|++..+.....
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 999999999999999999999999999987766544
No 23
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.46 E-value=2.8e-12 Score=100.58 Aligned_cols=112 Identities=27% Similarity=0.300 Sum_probs=103.4
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
..+....+.|..++.+|++.+|+..|..|++ |++..+++.+|++|+.+|.-.-|+.+++++|++.|+..-+-..+|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 4577888999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
+..+|++++|..+|..++..+|++........++
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl 149 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL 149 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 9999999999999999999999775544444433
No 24
>PRK15331 chaperone protein SicA; Provisional
Probab=99.42 E-value=1e-11 Score=88.57 Aligned_cols=117 Identities=10% Similarity=0.059 Sum_probs=103.8
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
......+..|..+|..|++++|...|.-... +.++..+..+|.|+..+++|++|+..|..+..+++++|...|..|.|
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 4567889999999999999999999998877 88899999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQRE 185 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 185 (202)
+..+|+.+.|..+|+.++. .|.+..++..-....+.+++
T Consensus 115 ~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 9999999999999999999 57777666655444444443
No 25
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.41 E-value=1.1e-11 Score=90.79 Aligned_cols=107 Identities=25% Similarity=0.254 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChH
Q 046569 63 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVK 137 (202)
Q Consensus 63 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 137 (202)
.......+..+...|..+...|++++|+..|.+++. +....++.++|.++..+|++++|+..+.+++...|.++.
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 344566788899999999999999999999999997 234679999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC--------------HHHHHHHHHHHHhcCCCC
Q 046569 138 ALFRRSQAYLKTSE--------------LEKDEADIKRALTIDPNN 169 (202)
Q Consensus 138 ~~~~~g~~~~~~~~--------------~~~A~~~~~~a~~l~p~~ 169 (202)
++..+|.++...|+ +++|.+++++++.++|++
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999998 688999999999999987
No 26
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.41 E-value=3.9e-13 Score=109.28 Aligned_cols=119 Identities=25% Similarity=0.303 Sum_probs=113.6
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAY 146 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 146 (202)
.+.....+++.+++.+.|+.|+..|.+||+ |+.+..+.+++.++++.++|..|+.++.+|++++|...++|+++|.+.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 356778999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 147 LKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
..++++.+|+..|++...+.|+++.+++.+..+.....+++
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887644
No 27
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=1.2e-12 Score=109.54 Aligned_cols=119 Identities=19% Similarity=0.188 Sum_probs=70.8
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAY 146 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 146 (202)
..+.|-..||.|..+++++.||+.|++||. |.+.-+|..+|.=+....+|+.|..+|+.||..+|.+-.|||.+|.+|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 456677888999889999999999998887 444555555555555555555555555555555555555555555555
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 147 LKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
.++++++.|.-+|++|++++|.|..+...+.....++++.+
T Consensus 500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD 540 (638)
T ss_pred eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh
Confidence 55555555555555555555555555555544444444433
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.39 E-value=2.1e-11 Score=109.93 Aligned_cols=115 Identities=5% Similarity=-0.060 Sum_probs=91.0
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
+..+...|..+.+.|++++|+..|.+++. |.++.++.++|.++...|++++|+..+.++++++|+++.+++++|.++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34556777788888888888888888888 7788888888888888888888888888888888888888888888888
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 046569 148 KTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQR 184 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 184 (202)
..|++++|+..|++++.++|++..+......+....-
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF 725 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH
Confidence 8888888888888888888888777766665554443
No 29
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.38 E-value=2e-11 Score=91.48 Aligned_cols=115 Identities=14% Similarity=0.108 Sum_probs=102.9
Q ss_pred cCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHH-hcCCC--HHHHHH
Q 046569 83 AGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAY-LKTSE--LEKDEA 157 (202)
Q Consensus 83 ~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~-~~~~~--~~~A~~ 157 (202)
.++.++++..+.+++. |.+...|..+|.+|..+|++++|+..|.++++++|+++..++.+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 5677899999999999 999999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046569 158 DIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSML 198 (202)
Q Consensus 158 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 198 (202)
.+++++.++|++..++..++..........+... .|.++.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL 171 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVL 171 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence 9999999999999999999998887776664443 666654
No 30
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.37 E-value=2.8e-12 Score=78.68 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=59.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH
Q 046569 106 LNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 106 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
+.+|..++..|+|++|+..|+.+++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999986
No 31
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.5e-12 Score=97.22 Aligned_cols=113 Identities=27% Similarity=0.368 Sum_probs=100.7
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
..+..+.+.|+.+|....|..|+..|.+||. |..+..|.|++.||+++++|+.+..+|.++++++|+.++++|.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 4578899999999999999999999999999 88899999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCC---CC--HHHHHHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDP---NN--RDVKLVYMELK 180 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p---~~--~~~~~~l~~~~ 180 (202)
+.....|++|+.+++++.++.- -+ ..+...|..++
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999999977632 11 34555555443
No 32
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.37 E-value=8e-11 Score=90.33 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=99.4
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--h---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChH---HH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--G---LRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVK---AL 139 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~ 139 (202)
..+..+...|..++..|+|++|+..|.+++. | ....+++.+|.+|...|++++|+..++++++..|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3467889999999999999999999999998 4 34578999999999999999999999999999998876 79
Q ss_pred HHHHHHHhcC--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 140 FRRSQAYLKT--------SELEKDEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 140 ~~~g~~~~~~--------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
+.+|.++... |++++|+..|++++..+|++..+...+..+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~ 158 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM 158 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH
Confidence 9999999987 889999999999999999997766555443
No 33
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.36 E-value=1.6e-11 Score=79.04 Aligned_cols=97 Identities=37% Similarity=0.470 Sum_probs=89.7
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKT 149 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 149 (202)
.+...|..++..|++.+|+..+.+++. |....++..+|.++...+++++|+..++.++...|.++.+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 356788899999999999999999998 777789999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 046569 150 SELEKDEADIKRALTIDPN 168 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l~p~ 168 (202)
|++++|...+.+++..+|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 34
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.36 E-value=1.9e-12 Score=95.73 Aligned_cols=135 Identities=18% Similarity=0.111 Sum_probs=123.2
Q ss_pred cccccCCCceEEEEEEEccccCCCCccCCCHHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHH
Q 046569 33 VSELVCANSVLYYEVTLIDFTKEKPFWKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAA 110 (202)
Q Consensus 33 ~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~ 110 (202)
.+..+|..+++..+|-+..+.+......++.+++ |..+.++|+.+-..|-+..|...|++++. |..+.+++.+|.
T Consensus 31 ~~~~~~~qp~lqqEV~iarlsqlL~~~~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~ 107 (297)
T COG4785 31 EVLAVPLQPTLQQEVILARMSQILASRALTDEER---AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGI 107 (297)
T ss_pred ceeeccCCccHHHHHHHHHHHHHHHhccCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHH
Confidence 3556677777777777777777667777787877 88999999999999999999999999999 999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH
Q 046569 111 CKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 111 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
.+...|+|+.|.+.|+.++++||.+..++.++|.+++--|++.-|.+++.+....||+||
T Consensus 108 Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 108 YLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred HHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 999999999999999999999999999999999999999999999999999999999997
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.35 E-value=1.2e-10 Score=87.73 Aligned_cols=113 Identities=19% Similarity=0.319 Sum_probs=75.6
Q ss_pred HHHHhHHHHHcCcHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 73 KKHDGNLLFRAGKYWRASKKYEKATN----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 73 ~~~~g~~~~~~~~~~~A~~~y~~al~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
+...|..++..|++++|+..|.+++. +.....+.++|.++...|++++|...+.+++..+|+++.+++.+|.++..
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 34455556666666666666666665 33455666777777777777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 046569 149 TSELEKDEADIKRALTIDPNNRDVKLVYMELKENQRE 185 (202)
Q Consensus 149 ~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 185 (202)
.|++++|...+++++.+.|.++.....+..+......
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD 218 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 7777777777777777766666666555555544433
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.35 E-value=2.1e-11 Score=86.81 Aligned_cols=96 Identities=11% Similarity=0.018 Sum_probs=86.7
Q ss_pred HHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 046569 90 SKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDP 167 (202)
Q Consensus 90 ~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 167 (202)
...|+++++ |.. +.++|.++..+|++++|+..|++++.++|.++.+|+.+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 356777777 443 668899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 046569 168 NNRDVKLVYMELKENQREYAK 188 (202)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~ 188 (202)
+++.+...+..+...+.+..+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHH
Confidence 999999999998887766554
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=8e-11 Score=95.50 Aligned_cols=128 Identities=15% Similarity=0.126 Sum_probs=113.9
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
.....+.-.|..+...++...|++.|.+|++ |.+..+|+.+|++|--++=+.=|+-+|++|+++.|+++..|..+|.|
T Consensus 362 ~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 362 KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGEC 441 (559)
T ss_pred chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 4455667788889999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGS 196 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 196 (202)
|.++++.++|+.||.+|+.....+..+...++++.+.++..++... .|.+
T Consensus 442 Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~-~yek 491 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ-YYEK 491 (559)
T ss_pred HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 9999999999999999999998999999999999999987764433 4444
No 38
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.34 E-value=1.1e-10 Score=85.14 Aligned_cols=105 Identities=19% Similarity=0.134 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--h---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHH
Q 046569 66 KIEACERKKHDGNLLFRAGKYWRASKKYEKATN--G---LRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALF 140 (202)
Q Consensus 66 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 140 (202)
....+..+...|..++..|+|++|+..|.+++. + ..+.++.++|.++..+|++++|+..+.+++.++|.+..++.
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 344678889999999999999999999999987 2 34568999999999999999999999999999999999999
Q ss_pred HHHHHHh-------cCCCHH-------HHHHHHHHHHhcCCCCH
Q 046569 141 RRSQAYL-------KTSELE-------KDEADIKRALTIDPNNR 170 (202)
Q Consensus 141 ~~g~~~~-------~~~~~~-------~A~~~~~~a~~l~p~~~ 170 (202)
++|.++. .+|+++ +|+..|++++.++|.+.
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999 777766 67777778888998763
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=1.5e-10 Score=87.17 Aligned_cols=114 Identities=19% Similarity=0.184 Sum_probs=60.6
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC--CCChHHHHHHHHHHh
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE--PLNVKALFRRSQAYL 147 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~ 147 (202)
.+...|..++..|++++|+..|.+++. |....++.++|.++...|++++|+..+.+++... |.....++.+|.++.
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL 146 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 334445555555555555555555554 4444555555555555555555555555555432 233445555555566
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 046569 148 KTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQRE 185 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 185 (202)
..|++++|...|.+++..+|.++.....+..+.....+
T Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence 66666666666666666666555555555555444433
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.33 E-value=6.7e-11 Score=106.74 Aligned_cols=119 Identities=16% Similarity=0.101 Sum_probs=106.2
Q ss_pred hHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHH
Q 046569 77 GNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEK 154 (202)
Q Consensus 77 g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 154 (202)
+......|++++|+..|.+++. |. +.++.++|.++.++|++++|+..+.+++.++|+++.++.++|.++...|++++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3344455999999999999999 75 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046569 155 DEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSM 197 (202)
Q Consensus 155 A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (202)
|+..|++++.++|+++.+...++.+...+........ .|.+.
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~-~l~~A 703 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH-YARLV 703 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence 9999999999999999999999999888777664443 55544
No 41
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.33 E-value=6.1e-11 Score=103.43 Aligned_cols=129 Identities=5% Similarity=-0.030 Sum_probs=116.9
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
..+..++..|......|.+++|...+..+++ |++..++.+++.++.+++++++|+..+++++..+|+++.+++.+|.+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 3466778899999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSM 197 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (202)
+.++|++++|...|++++..+|+++.++..++.+.+...+..... ..|.+.
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a 214 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAG 214 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 999999999999999999999999999999999888776655333 245544
No 42
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.32 E-value=8.9e-12 Score=80.47 Aligned_cols=79 Identities=29% Similarity=0.391 Sum_probs=71.1
Q ss_pred cCcHHHHHHHHHHHHH--hH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHH
Q 046569 83 AGKYWRASKKYEKATN--GL--RLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEAD 158 (202)
Q Consensus 83 ~~~~~~A~~~y~~al~--~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~ 158 (202)
+|+|+.|+..|.++++ |. ...+++.+|.||+++|+|++|+..+++ +..+|.++..++.+|.|+..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6899999999999999 42 667888899999999999999999999 889998999999999999999999999999
Q ss_pred HHHH
Q 046569 159 IKRA 162 (202)
Q Consensus 159 ~~~a 162 (202)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 43
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.32 E-value=1.4e-11 Score=76.35 Aligned_cols=64 Identities=33% Similarity=0.441 Sum_probs=61.8
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhhhCC
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLE-DYSEASSLCTKVLELEP 133 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p 133 (202)
+..+...|..++..|+|++|+..|+++|+ |.++.+++++|.+|..+| ++.+|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 67889999999999999999999999999 999999999999999999 79999999999999998
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.31 E-value=1.8e-11 Score=96.45 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=99.0
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAY 146 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 146 (202)
....+...|..+.+.|++++|+..|.++++ |.+..+...++.++...|+++++...+.......|+++..+..+|.++
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY 224 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence 345567788888999999999999999999 888999999999999999999988888888888888889999999999
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 046569 147 LKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSMLSK 200 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 200 (202)
..+|++++|+..|++++..+|+|+.+...++.+.....+..+... .+++.+..
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~-~~~~~~~~ 277 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR-LRRQALRL 277 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 999999999999999999999999999999999888877664443 55555543
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2.9e-11 Score=98.54 Aligned_cols=110 Identities=21% Similarity=0.255 Sum_probs=88.0
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
..+..+.-.|..+|..|++..|...+.++|+ |..+.+|..+|.+|....+.++-..+|++|..++|.++..|+.||+.
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 4577888899999999999999999999999 66666677888888888888888888888888888888888888888
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
++-++++++|+.+|++++.++|++.-....+.
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~ 435 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPENAYAYIQLC 435 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHH
Confidence 88888888888888888888887754444433
No 46
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.30 E-value=1.7e-10 Score=89.90 Aligned_cols=111 Identities=11% Similarity=0.066 Sum_probs=97.3
Q ss_pred HHHHHHHhHHH-HHcCcHHHHHHHHHHHHH--hH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHH
Q 046569 70 CERKKHDGNLL-FRAGKYWRASKKYEKATN--GL---RLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALF 140 (202)
Q Consensus 70 a~~~~~~g~~~-~~~~~~~~A~~~y~~al~--~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 140 (202)
....+..|..+ ++.|+|++|+..|...+. |. .+.+++.+|.+|+..|++++|+..|.+++...|++ +.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34556677665 667999999999999999 43 46899999999999999999999999999988874 78899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046569 141 RRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELK 180 (202)
Q Consensus 141 ~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 180 (202)
.+|.++..+|++++|...|+++++..|+...+.....++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~ 261 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLN 261 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHh
Confidence 9999999999999999999999999999988777766653
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=8.4e-11 Score=101.05 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046569 84 GKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKR 161 (202)
Q Consensus 84 ~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 161 (202)
+++.+|+..+.+|++ |.++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..+++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444555555555554 444555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhcCCCCH
Q 046569 162 ALTIDPNNR 170 (202)
Q Consensus 162 a~~l~p~~~ 170 (202)
++.++|.++
T Consensus 398 Al~l~P~~~ 406 (553)
T PRK12370 398 CLKLDPTRA 406 (553)
T ss_pred HHhcCCCCh
Confidence 555555543
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1e-11 Score=104.09 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
..-..+++..|.++.++++++.|.-.|++|++ |.+..+...+|..+.++|+.++|+..+++|+.++|.++-..|.+|.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 45667888999999999999999999999998 8888899999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 145 AYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
+++.++++++|+..++....+.|++..+...+.++.+++....
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999988886654
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=1.1e-10 Score=92.90 Aligned_cols=104 Identities=12% Similarity=-0.033 Sum_probs=92.9
Q ss_pred CcHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHH
Q 046569 84 GKYWRASKKYEKATN------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEA 157 (202)
Q Consensus 84 ~~~~~A~~~y~~al~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 157 (202)
+..+.++..+.++|. +..+..|+++|.+|..+|++++|+.+|+++++++|+++.+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456778888888886 45688899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 158 DIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 158 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
.|+++++++|++..+...+..+.....+..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999888887765544443
No 50
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.30 E-value=1.2e-10 Score=81.31 Aligned_cols=108 Identities=19% Similarity=0.218 Sum_probs=98.3
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALFR 141 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 141 (202)
+..++..|...++.|+|.+|++.|+.... +....+...++.+|++.++|++|+..+++-++++|.+ +.++|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 56788999999999999999999999888 7888899999999999999999999999999999988 457999
Q ss_pred HHHHHhcCCC---------------HHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 142 RSQAYLKTSE---------------LEKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 142 ~g~~~~~~~~---------------~~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
+|.+++.+.. ..+|...|++++...|++..+.....
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~ 140 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARK 140 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 9999999987 88999999999999999977665543
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.8e-11 Score=99.25 Aligned_cols=113 Identities=21% Similarity=0.179 Sum_probs=102.1
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN---------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALF 140 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 140 (202)
...+.+.|...|..+.|.+|+.+|+.++. +.-.+.+.|+|.++.+++.+++|+..++++|.+.|.++.++.
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~a 493 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHA 493 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHH
Confidence 34557899999999999999999999996 334556899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 046569 141 RRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKEN 182 (202)
Q Consensus 141 ~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 182 (202)
.+|.+|.-+|+++.|++.|.+++-++|+|..+...|...-+.
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999998888887765444
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.28 E-value=1.1e-10 Score=100.34 Aligned_cols=127 Identities=9% Similarity=-0.037 Sum_probs=109.3
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
+..+...|..+...|++++|+..|+++++ |+++.+++++|.++...|++++|+..++++++++|.++.+++.++.+++
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 34455778889999999999999999999 9999999999999999999999999999999999999888888888888
Q ss_pred cCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046569 148 KTSELEKDEADIKRALTID-PNNRDVKLVYMELKENQREYAKYQAEIFGSM 197 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (202)
..|++++|+..+++++... |+++.+...+..+...+.+..+... .+.++
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~-~~~~~ 467 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK-LTKEI 467 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH-HHHHh
Confidence 9999999999999999885 7889888888888776655544333 34443
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.3e-10 Score=94.26 Aligned_cols=122 Identities=14% Similarity=0.107 Sum_probs=113.1
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCH
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSEL 152 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 152 (202)
-.||-+.-+++.++|+..|++|+. |....+|..+|.=|..+++-..|++.|+.|++++|.+-.+||.+|++|.-++=.
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch
Confidence 368888889999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046569 153 EKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSM 197 (202)
Q Consensus 153 ~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (202)
.-|+-.|++|..+-|+|+.....+..+...+.+..+..+ =|++.
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK-Cykra 458 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK-CYKRA 458 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH-HHHHH
Confidence 999999999999999999999999999998877665544 45544
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=5.2e-11 Score=93.57 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hH----HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHH
Q 046569 66 KIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GL----RLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKAL 139 (202)
Q Consensus 66 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 139 (202)
+++......+.+......++|.++++.+++.++ |. ....+.-++.|+..-+++-+|+..|.++|.++|+++.++
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l 344 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVL 344 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHH
Confidence 455666666777888899999999999999999 33 344556789999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 140 FRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 140 ~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
+.++.+|.....|+.|+.+|++|.+++|+|..++..+.+.++..++..
T Consensus 345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~ 392 (504)
T KOG0624|consen 345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG 392 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988887754
No 55
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.26 E-value=1.8e-10 Score=100.85 Aligned_cols=112 Identities=19% Similarity=0.165 Sum_probs=85.1
Q ss_pred HhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHhhhCCCChHHHHHHHHHHhcC
Q 046569 76 DGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSE----ASSLCTKVLELEPLNVKALFRRSQAYLKT 149 (202)
Q Consensus 76 ~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 149 (202)
.|..+...|++++|+..|.+++. |..+.++.++|.++..+|++++ |+..|++++.++|+++.++..+|.++...
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 35666777788888888888777 7777777788888888887775 67788888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 150 SELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
|++++|+..+++++.++|+++.+...+..+.....+..
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 88888888888888888888777777776665554444
No 56
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.26 E-value=1.6e-10 Score=80.97 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=90.5
Q ss_pred HHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 046569 91 KKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPN 168 (202)
Q Consensus 91 ~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 168 (202)
..|.+++. |....+...+|.++...|++++|+..+++++..+|.++.+++++|.++...|++++|...|++++.++|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35677777 7888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 046569 169 NRDVKLVYMELKENQREYAKY 189 (202)
Q Consensus 169 ~~~~~~~l~~~~~~~~~~~~~ 189 (202)
++.....++.+.....+..+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A 104 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESA 104 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHH
Confidence 999999999888777665533
No 57
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.25 E-value=5.2e-11 Score=74.61 Aligned_cols=71 Identities=27% Similarity=0.465 Sum_probs=66.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 109 AACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 109 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
..+|+..++|++|+.++++++.++|+++..++.+|.++..+|++++|..+|+++++..|+++.+....+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 56889999999999999999999999999999999999999999999999999999999999888777654
No 58
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.25 E-value=2.7e-10 Score=86.42 Aligned_cols=117 Identities=18% Similarity=0.147 Sum_probs=109.0
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKT 149 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 149 (202)
.+...|...+..|+|..|+..+.++.. |.++.+|+.+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..+.-.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 444589999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 046569 150 SELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAK 188 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 188 (202)
|++++|...+.++...-+.|..+..+++.+.........
T Consensus 182 gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 182 GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 999999999999999999999999999998776654443
No 59
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.23 E-value=8.1e-10 Score=95.63 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=119.6
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
..+..+..+||.+|..|++++|..++.++|+ |.++.+|+-+|.+|-.+|+.++++.++-.|-.++|.+...|..++..
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 3477888999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSMLSKM 201 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 201 (202)
..++|.+.+|.-||.+|++++|.|....-..+.+.++..+..... .-|.++|.-+
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am-~~f~~l~~~~ 271 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAM-ETFLQLLQLD 271 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHH-HHHHHHHhhC
Confidence 999999999999999999999999888888888888776655333 3566666543
No 60
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.21 E-value=4.6e-10 Score=98.29 Aligned_cols=113 Identities=9% Similarity=0.023 Sum_probs=98.2
Q ss_pred HHHHHHHhHHHHHcCcHHH----HHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWR----ASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRS 143 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~----A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 143 (202)
...+...|..+...|++++ |+..|.+++. |..+.++.++|.++...|++++|+..+++++.++|+++.++..+|
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455678899999999986 8999999998 889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 046569 144 QAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKEN 182 (202)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 182 (202)
.++...|++++|+..|++++..+|++......+..+...
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 999999999999999999999999987655554444433
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=9.1e-10 Score=82.22 Aligned_cols=118 Identities=25% Similarity=0.241 Sum_probs=82.0
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC-----------
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL----------- 134 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------- 134 (202)
..+....+.|..++..|++..|...+++||+ |....+|.-+|.+|.+.|+.+.|-+.|++|+.++|+
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 3355566777777777777777777777777 666666666666666666666666666666666544
Q ss_pred -------------------------ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 046569 135 -------------------------NVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQRE 185 (202)
Q Consensus 135 -------------------------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 185 (202)
.+.++-++|.|..+.|+++.|...|+++++++|+++.....++...-....
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 345666778888888888888888888888888887777777666544433
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.21 E-value=3e-10 Score=84.73 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRR 142 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 142 (202)
++....+.+-|..+..+|+|++|...|.+|+. +..+..+.|+|.|.++.|+++.|...++++++++|+++.+...+
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~ 179 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLEL 179 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHH
Confidence 34556778889999999999999999999999 78889999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 046569 143 SQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQRE 185 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 185 (202)
+..++..|+|..|...+++....-+.+.+...+.-++.+++..
T Consensus 180 a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd 222 (250)
T COG3063 180 ARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988888888888888777743
No 63
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.21 E-value=6e-10 Score=85.40 Aligned_cols=110 Identities=16% Similarity=0.249 Sum_probs=102.0
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHHHH
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALFRR 142 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~ 142 (202)
...++.+..+++.|+|..|...|..-|. +..+.+++.+|.+++.+|+|++|...|..+++-.|++ |++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3489999999999999999999999999 7888999999999999999999999999999988876 6789999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046569 143 SQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELK 180 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 180 (202)
|.+...+|+.++|...|+++++..|..+.++.....++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~ 259 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALK 259 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999998888776664
No 64
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.20 E-value=6.6e-10 Score=99.08 Aligned_cols=126 Identities=17% Similarity=0.141 Sum_probs=98.0
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
...+...|..+...|++++|+..|.+++. |..+.++.+++.++...|+ .+|+..+++++.+.|+++..+..+|.++.
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 34555677777888888888888888887 7777888888888888888 77888888888888888888888888888
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046569 148 KTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSM 197 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (202)
..|++++|...|+++++++|.++.+...+..+........+ ....+.+|
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~ 897 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE-ARKELDKL 897 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHH
Confidence 88888888888888888888888888888877666655443 23344444
No 65
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=5.2e-11 Score=98.65 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=94.2
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
+..+-..|..|+..|+|+.|+.+|+.||. |++..+|+.+|.++..-.+.++|+..|++|+++.|.++.+.|++|.++.
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 34455789999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCC
Q 046569 148 KTSELEKDEADIKRALTIDPN 168 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~p~ 168 (202)
.+|.|.+|..+|-.|+.+.+.
T Consensus 510 NlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999876
No 66
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.19 E-value=4.4e-09 Score=81.21 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=99.4
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALFR 141 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 141 (202)
+...+..|..++..|+|++|+..|++.+. +....+.+++|.+|++.++|+.|+..+++.++..|++ +.++|.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 66688999999999999999999999999 5666677999999999999999999999999999987 567999
Q ss_pred HHHHHhcCCC------------------HHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHH
Q 046569 142 RSQAYLKTSE------------------LEKDEADIKRALTIDPNN---RDVKLVYMELKENQREYA 187 (202)
Q Consensus 142 ~g~~~~~~~~------------------~~~A~~~~~~a~~l~p~~---~~~~~~l~~~~~~~~~~~ 187 (202)
+|.++...+. ..+|+..|+..+...|+. ++++..+..++.++.+..
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e 178 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE 178 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence 9998755541 256889999999999998 466666777777765543
No 67
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.19 E-value=2.1e-09 Score=80.90 Aligned_cols=118 Identities=23% Similarity=0.238 Sum_probs=96.9
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALF 140 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 140 (202)
.+..++..|..++..|+|.+|+..|++.+. +....+.+.+|.++++.|+|..|+..++..++..|++ +.+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 467889999999999999999999999998 7888999999999999999999999999999999987 46899
Q ss_pred HHHHHHhcCC-----------CHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHH
Q 046569 141 RRSQAYLKTS-----------ELEKDEADIKRALTIDPNNR---DVKLVYMELKENQREY 186 (202)
Q Consensus 141 ~~g~~~~~~~-----------~~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~~ 186 (202)
.+|.+++.+. ...+|+..|+..+...|+.+ .+...+..++..+.+.
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 9999977654 34589999999999999985 5566666666666543
No 68
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.18 E-value=1e-10 Score=72.24 Aligned_cols=67 Identities=33% Similarity=0.477 Sum_probs=61.2
Q ss_pred HHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 113 LKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 113 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
+..|+|++|+..|++++..+|+++.+++.+|.+|...|++++|...+++++..+|+++.+...++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999998888887764
No 69
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.17 E-value=1.4e-09 Score=74.44 Aligned_cols=107 Identities=23% Similarity=0.165 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC----h
Q 046569 63 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN----V 136 (202)
Q Consensus 63 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~ 136 (202)
.....+....+-.+|..+...|+.+.|++.|.++|. |..+++|+|++.++.-.|+.++|++++++++++..+. .
T Consensus 36 ~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac 115 (175)
T KOG4555|consen 36 DTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115 (175)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence 344556667777899999999999999999999999 9999999999999999999999999999999986543 4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC
Q 046569 137 KALFRRSQAYLKTSELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 169 (202)
.++..+|..|..+|+.+.|..+|+.+.++-+..
T Consensus 116 qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 116 QAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 578889999999999999999999999886543
No 70
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.17 E-value=2.6e-10 Score=69.80 Aligned_cols=62 Identities=23% Similarity=0.267 Sum_probs=58.1
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNV 136 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 136 (202)
..|..++..|+|++|+..|+++++ |.++.+++.+|.++..+|++++|+..|++++..+|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 578999999999999999999999 99999999999999999999999999999999999875
No 71
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=1.2e-09 Score=87.44 Aligned_cols=115 Identities=12% Similarity=-0.032 Sum_probs=101.2
Q ss_pred HHHHHHHHHhHHHHHcC-cHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHhhhCCCChHHHHHH
Q 046569 68 EACERKKHDGNLLFRAG-KYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDY--SEASSLCTKVLELEPLNVKALFRR 142 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~-~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~ 142 (202)
.....+..+|..+...+ ++.+++..+.+++. |.+..+|++++.++.+++.. ++++.+++++++.+|.+..+|..+
T Consensus 69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R 148 (320)
T PLN02789 69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHR 148 (320)
T ss_pred hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHH
Confidence 34556778888888887 68999999999998 88888999999999888874 678999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 046569 143 SQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKEN 182 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 182 (202)
|.++...|++++|++++.++++.+|.|.++.....-+...
T Consensus 149 ~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 149 QWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 9999999999999999999999999999888888776544
No 72
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.16 E-value=7.2e-10 Score=78.80 Aligned_cols=89 Identities=11% Similarity=0.069 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYME 178 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 178 (202)
+..-+..+.+|..+...|++++|...|+.+..++|.+...|+++|.|+..+|+|.+|+..|.+++.++|+|+....+...
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 046569 179 LKENQREYA 187 (202)
Q Consensus 179 ~~~~~~~~~ 187 (202)
+.-.+.+..
T Consensus 112 c~L~lG~~~ 120 (157)
T PRK15363 112 CYLACDNVC 120 (157)
T ss_pred HHHHcCCHH
Confidence 876665443
No 73
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.16 E-value=1.4e-09 Score=97.03 Aligned_cols=119 Identities=28% Similarity=0.317 Sum_probs=106.5
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
..+..+...|..++..|++++|+..|.+++. |....++..+|.++...|++++|+..+++++..+|.++.+++.+|.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 202 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL 202 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3466778899999999999999999999998 88888999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
+...|++++|...|++++.++|.++.+...+..+.....+.
T Consensus 203 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~ 243 (899)
T TIGR02917 203 LLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEF 243 (899)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999988887777765544433
No 74
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.14 E-value=1.3e-09 Score=101.09 Aligned_cols=107 Identities=18% Similarity=0.156 Sum_probs=54.5
Q ss_pred hHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChH--------------HHH
Q 046569 77 GNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVK--------------ALF 140 (202)
Q Consensus 77 g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~ 140 (202)
|..+...|++++|+..|++++. |.++.++..+|.+|..+|++++|+..|+++++++|++.. ...
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 5555556666666666666665 555555566666666666666666666555555554321 011
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 141 RRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 141 ~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
.+|.++...|++++|+..|++++.++|++..+...+..+....
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~ 398 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMAR 398 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 2244444444444444444444444444444444444443333
No 75
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.14 E-value=1.7e-09 Score=96.39 Aligned_cols=111 Identities=11% Similarity=0.066 Sum_probs=104.3
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
+..+...|..+...|++.+|+..|++++. |.++.++..++.++...|++++|+..+++++..+|+++. ++.+|.++.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 44577889999999999999999999999 888999999999999999999999999999999999999 999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046569 148 KTSELEKDEADIKRALTIDPNNRDVKLVYMELKE 181 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 181 (202)
..|++++|+..|++++.++|+++.+...+..+..
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999888877654
No 76
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.14 E-value=2.2e-09 Score=99.49 Aligned_cols=115 Identities=15% Similarity=0.211 Sum_probs=86.5
Q ss_pred HHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH-------
Q 046569 74 KHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ------- 144 (202)
Q Consensus 74 ~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~------- 144 (202)
...|..+...|++++|+..|++++. |....++.++|.++...|++++|+..|+++++++|++..++..++.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 3557777788888888888888888 7777788888888888888888888888888888877766554443
Q ss_pred -----------------------------------HHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 046569 145 -----------------------------------AYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAK 188 (202)
Q Consensus 145 -----------------------------------~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 188 (202)
++...|++++|+..|++++.++|+++.+...++.+.....+..+
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34456788888888888888888888777777777666555443
No 77
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.13 E-value=4e-09 Score=86.58 Aligned_cols=111 Identities=16% Similarity=0.179 Sum_probs=59.8
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh-----HHHHHHHH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNV-----KALFRRSQ 144 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~g~ 144 (202)
.+...|..++..|++++|+..|.++++ +....++..++.++...|++++|+..+.++++.+|.+. ..+..+|.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 344556666666666666666666655 44445555555555555555555555555555544331 13344555
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 046569 145 AYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKEN 182 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 182 (202)
++...|++++|...|++++..+|++..+...+..+...
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALA 226 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555444444444333
No 78
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.13 E-value=3.9e-09 Score=86.66 Aligned_cols=106 Identities=18% Similarity=0.118 Sum_probs=64.9
Q ss_pred HHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC-hHHHHHHHHHHhcC
Q 046569 73 KKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN-VKALFRRSQAYLKT 149 (202)
Q Consensus 73 ~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~ 149 (202)
+...|..+...|++++|+..|.++++ |....++..+|.++...|++++|+..+.+++..+|.+ ..++..++.+|...
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 34455556666666666666666665 5555666666666666666666666666666666654 34455666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 150 SELEKDEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
|++++|...+++++...|++... ..+..+
T Consensus 263 g~~~~A~~~l~~~~~~~p~~~~~-~~la~~ 291 (389)
T PRK11788 263 GDEAEGLEFLRRALEEYPGADLL-LALAQL 291 (389)
T ss_pred CCHHHHHHHHHHHHHhCCCchHH-HHHHHH
Confidence 66666666666666666655433 334443
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.12 E-value=5.1e-09 Score=80.31 Aligned_cols=120 Identities=12% Similarity=0.047 Sum_probs=101.7
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH--hH---HHHHHHHHHHHHHHh--------cCHHHHHHHHHHHhhhCCCChH
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN--GL---RLSCYLNNAACKLKL--------EDYSEASSLCTKVLELEPLNVK 137 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~---~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~~~ 137 (202)
..+...|..++..|++++|+..|.++++ |. ...+++.+|.++... |++++|+..+++++..+|++..
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence 4567889999999999999999999999 43 344799999999987 8999999999999999999865
Q ss_pred HH-----------------HHHHHHHhcCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHH
Q 046569 138 AL-----------------FRRSQAYLKTSELEKDEADIKRALTIDPNN---RDVKLVYMELKENQREYAKYQ 190 (202)
Q Consensus 138 ~~-----------------~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~~~~~~~~~~~~~ 190 (202)
++ +.+|.++...|++.+|+..|++++...|++ +.+...+..+...+.+..+..
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 42 467899999999999999999999998875 477788888877776665443
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.11 E-value=6.4e-10 Score=94.91 Aligned_cols=104 Identities=20% Similarity=0.182 Sum_probs=97.6
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHH--HHHHHhhhCCCChHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASS--LCTKVLELEPLNVKALFRRS 143 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~~g 143 (202)
..+..++..|..+..+|.+.+|...|..|+. |+.+.+...+|.++.+.|+..-|.. ....+++++|.++++|+.+|
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 3456778899999999999999999999998 9999999999999999999888888 99999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCHH
Q 046569 144 QAYLKTSELEKDEADIKRALTIDPNNRD 171 (202)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 171 (202)
.++...|+.++|.+||+.++++++.+|.
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999999874
No 81
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.1e-10 Score=74.19 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=50.2
Q ss_pred CcchHHHHHHhccccccEEEEEecccc-cccCCcccccCCCceEEEEEEEccc
Q 046569 1 NVNEGLERAIMTMKKEEQATVTISAEY-LCGHEVSELVCANSVLYYEVTLIDF 52 (202)
Q Consensus 1 ~v~~~~~~~~~~m~~ge~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~~~ 52 (202)
+||.|||.++.+|..||++.++|++.| ||..|.+..|||++++.|+++|+++
T Consensus 55 eVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 55 EVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ceeechhhcchhccccccceeeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 689999999999999999999999999 9999999999999999999999876
No 82
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.08 E-value=3.7e-09 Score=92.39 Aligned_cols=117 Identities=9% Similarity=-0.019 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
++.+......+..+.+.+++++|+..+++++. |++..+++.+|.++..+|++++|+..|++++..+|++++++..+|.
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~ 196 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQ 196 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 45566778899999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHH
Q 046569 145 AYLKTSELEKDEADIKRALTIDPNNR-DVKLVYMELKENQ 183 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~~l~p~~~-~~~~~l~~~~~~~ 183 (202)
++...|+.++|...|++++++...-. .....+.++....
T Consensus 197 ~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 236 (694)
T PRK15179 197 SLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADL 236 (694)
T ss_pred HHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999965543 3344444444433
No 83
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.5e-10 Score=88.48 Aligned_cols=138 Identities=30% Similarity=0.397 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH---------------------hHHHHHHHHHHHHHHHhcCHHH
Q 046569 62 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN---------------------GLRLSCYLNNAACKLKLEDYSE 120 (202)
Q Consensus 62 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~---------------------~~~~~~~~~~a~~~~~~~~~~~ 120 (202)
........+...++.|+..|+.++|..|...|.+++. .....++.|++.+-++++.+..
T Consensus 214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~ 293 (372)
T KOG0546|consen 214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG 293 (372)
T ss_pred ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence 3444566777888999999999999999999999987 1234567889999999999999
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046569 121 ASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSMLS 199 (202)
Q Consensus 121 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 199 (202)
|+..+..+++.++...+++++++.++....++++|+++++.+....|++.++...+..++....++..++++.+.+||+
T Consensus 294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 294 ARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred ceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
No 84
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.2e-09 Score=84.43 Aligned_cols=96 Identities=25% Similarity=0.256 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046569 101 RLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELK 180 (202)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 180 (202)
.+.-+-+-|.-.++.++|.+|+..|.+||+++|.++..|++++.+|.++|.++.|+.++++++.+||....+...|..+.
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 34456778888999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHhh
Q 046569 181 ENQREYAKYQAEIFGSM 197 (202)
Q Consensus 181 ~~~~~~~~~~~~~~~~~ 197 (202)
-.+.+....... |+|.
T Consensus 160 ~~~gk~~~A~~a-ykKa 175 (304)
T KOG0553|consen 160 LALGKYEEAIEA-YKKA 175 (304)
T ss_pred HccCcHHHHHHH-HHhh
Confidence 888777766664 7765
No 85
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=8.6e-09 Score=82.58 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=103.6
Q ss_pred HHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCH--HH
Q 046569 80 LFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLE-DYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSEL--EK 154 (202)
Q Consensus 80 ~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~--~~ 154 (202)
+...+.+.+|+..+.++|. |.+..+|..++.++..++ .+++++.+++++++.+|++..+|+.++.++..+++. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 5567899999999999999 999999999999999998 689999999999999999999999999999999874 78
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046569 155 DEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSM 197 (202)
Q Consensus 155 A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (202)
++..+.++++++|.|..+.....-+...+.... .+-..|.++
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~-eeL~~~~~~ 168 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWE-DELEYCHQL 168 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHH-HHHHHHHHH
Confidence 899999999999999999999988888876654 344455554
No 86
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.06 E-value=5.7e-09 Score=93.01 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=101.0
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
..+...|..+...|++++|+..+.+++. |.+..++..+|.++...|++++|+..+++++.++|+++..++.+|.++..
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 3456788889999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 149 TSELEKDEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 149 ~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
.|++++|...+++++..+|+++.+...-...
T Consensus 440 ~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999777654443
No 87
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.04 E-value=6.8e-09 Score=90.71 Aligned_cols=115 Identities=19% Similarity=0.195 Sum_probs=106.4
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC-hHHHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN-VKALFRRS 143 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g 143 (202)
+..+.-.++.+|-.|+|..+..++..++. +..+..++++|.+|..+|+|++|..+|..++..+|++ .-+++.+|
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG 349 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence 34556788999999999999999999998 6778889999999999999999999999999999988 88999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 046569 144 QAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQR 184 (202)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 184 (202)
+.+...|+++.|..||++++...|++.+....+..+.....
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 99999999999999999999999999999999999877773
No 88
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.9e-09 Score=87.77 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=107.2
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
+.++.+.||..|..|++++|.+.|.+|+. .....+++|+|..+-.+|+.++|+++|-+...+--++...++.++.+|.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45667899999999999999999999999 7888999999999999999999999999988888889999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 046569 148 KTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQRE 185 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 185 (202)
.+.+-.+|++.+.++..+-|+||.+...++.+..+...
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999998766543
No 89
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=2.3e-08 Score=81.88 Aligned_cols=131 Identities=16% Similarity=0.032 Sum_probs=117.4
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
......+..+...+..|+++.|...++..+. |+++-++...+.++++.++..+|++.+.+++.++|+.+..++++|++
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~a 383 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQA 383 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 3455677888999999999999999999888 99999999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSML 198 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 198 (202)
|...|+..+|+..++..+.-+|+|+..+..|++....+....+........+|
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888666555554444443
No 90
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.00 E-value=1.1e-08 Score=65.41 Aligned_cols=84 Identities=31% Similarity=0.391 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 104 CYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 104 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
+++++|.++...|++++|+..+.++++..|.++.+++.+|.++...+++++|..+|++++...|.+..+...+..+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999998888888777666
Q ss_pred HHHH
Q 046569 184 REYA 187 (202)
Q Consensus 184 ~~~~ 187 (202)
....
T Consensus 82 ~~~~ 85 (100)
T cd00189 82 GKYE 85 (100)
T ss_pred HhHH
Confidence 5544
No 91
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.99 E-value=1.3e-09 Score=69.17 Aligned_cols=67 Identities=24% Similarity=0.271 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC----CC---ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE----PL---NVKALFRRSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
|....++.++|.+|..+|+|++|+++|++++.+. ++ ...++.++|.++..+|++++|+..+++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4567788889999999999999999988888652 22 2567888899999999999999998888875
No 92
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.99 E-value=1.2e-08 Score=74.38 Aligned_cols=107 Identities=13% Similarity=0.004 Sum_probs=89.9
Q ss_pred HHHHHcCcHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHHHHHHHHhcCC
Q 046569 78 NLLFRAGKYWRASKKYEKATN----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALFRRSQAYLKTS 150 (202)
Q Consensus 78 ~~~~~~~~~~~A~~~y~~al~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~ 150 (202)
+-+|-.+.|..+...+...+. .....+++++|.++..+|++++|+..|.+++.+.|++ +.+++++|.++...|
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 344555567777777755554 6678889999999999999999999999999987753 468999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 046569 151 ELEKDEADIKRALTIDPNNRDVKLVYMELKENQR 184 (202)
Q Consensus 151 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 184 (202)
++++|+..|++++.++|.+......+..+...+.
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 9999999999999999999988888888777443
No 93
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.99 E-value=2.1e-09 Score=87.97 Aligned_cols=67 Identities=16% Similarity=0.071 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHH---HHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKA---LFRRSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
|..+.+++|+|.+|+.+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|++++++|+++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555555555555432 555555555555555555555555554
No 94
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.98 E-value=1.3e-08 Score=72.43 Aligned_cols=91 Identities=19% Similarity=0.161 Sum_probs=41.9
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALFR 141 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 141 (202)
+...+......+..+++..+...+...+. +....+...+|.+++..|++++|+..|+.++...|+. +.+.++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34444444444444444444444444444 2334444444455555555555555555544444322 234444
Q ss_pred HHHHHhcCCCHHHHHHHHH
Q 046569 142 RSQAYLKTSELEKDEADIK 160 (202)
Q Consensus 142 ~g~~~~~~~~~~~A~~~~~ 160 (202)
+|.++...|++++|+..++
T Consensus 91 LA~~~~~~~~~d~Al~~L~ 109 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQ 109 (145)
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 4555555555555544443
No 95
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.98 E-value=7.2e-10 Score=87.01 Aligned_cols=106 Identities=22% Similarity=0.202 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHH
Q 046569 62 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKAL 139 (202)
Q Consensus 62 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 139 (202)
.+++....+...+..+...+..|.++.|+..|+.+|. |....+|.+++.++++++.+..|+.+|..+++++|+....|
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~y 185 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGY 185 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccccc
Confidence 5566778899999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 046569 140 FRRSQAYLKTSELEKDEADIKRALTIDP 167 (202)
Q Consensus 140 ~~~g~~~~~~~~~~~A~~~~~~a~~l~p 167 (202)
-.+|.+...+|++++|..++..+.+++-
T Consensus 186 kfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 186 KFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred chhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 9999999999999999999999999973
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=7.5e-09 Score=86.08 Aligned_cols=128 Identities=12% Similarity=0.039 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH-------------------------------------------
Q 046569 62 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN------------------------------------------- 98 (202)
Q Consensus 62 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~------------------------------------------- 98 (202)
.+.+.+..++++...|......++=..||..+.+|++
T Consensus 311 AVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~ 390 (579)
T KOG1125|consen 311 AVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLV 390 (579)
T ss_pred HHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcc
Confidence 4455567788888888888888888888888888887
Q ss_pred ----------------------------------h--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHH
Q 046569 99 ----------------------------------G--LRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRR 142 (202)
Q Consensus 99 ----------------------------------~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 142 (202)
+ ..++++..+|.+|...|+|++|+++|+.||..+|++...|.++
T Consensus 391 ~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL 470 (579)
T KOG1125|consen 391 SAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL 470 (579)
T ss_pred ccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh
Confidence 3 6788999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 046569 143 SQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKY 189 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 189 (202)
|-++..-.+.++|+..|++|++|.|....++.++......+..+++.
T Consensus 471 GAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 471 GATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999988888888877777666543
No 97
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.96 E-value=3.3e-08 Score=67.82 Aligned_cols=94 Identities=19% Similarity=0.048 Sum_probs=85.6
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC---ChHHHHHH
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL---NVKALFRR 142 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~ 142 (202)
...++.|..+...|+.++|+..|.+++. +....++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 3567889999999999999999999999 666789999999999999999999999999999887 77788889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHh
Q 046569 143 SQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
+.++...|+.++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999977664
No 98
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.95 E-value=3.4e-09 Score=65.28 Aligned_cols=65 Identities=31% Similarity=0.315 Sum_probs=59.7
Q ss_pred HHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 80 LFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 80 ~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
+++.|+|++|+..|++++. |.+..++..+|.||++.|++++|...+.+++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678999999999999999 9999999999999999999999999999999999998888877765
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.95 E-value=2.1e-08 Score=76.18 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=97.2
Q ss_pred HHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCC
Q 046569 74 KHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSE 151 (202)
Q Consensus 74 ~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 151 (202)
....+.++..|+-+.++....++.. +....+....|...+..|+|..|+..++++..+.|+++.+|..+|.+|.+.|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 4566667777777777777777555 77777787799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 046569 152 LEKDEADIKRALTIDPNNRDVKLVYMELKENQRE 185 (202)
Q Consensus 152 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 185 (202)
+++|...|.+++++.|+++.+..++....-.-..
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 9999999999999999999999999876554433
No 100
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.95 E-value=2.2e-08 Score=89.17 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=74.5
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHH--HHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRR--SQA 145 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~--g~~ 145 (202)
+...+..+...++.|++..|+..|.++++ |..+.....+..++...|++++|+..+++++ +|.+...+..+ |.+
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~l 111 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARA 111 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHH
Confidence 44667888888888888888888888887 5554333366666666677777777777777 44333333333 667
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
+..+|++++|++.|+++++.+|+|+.+...+..+....
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 77777777777777777777777766666554444444
No 101
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.93 E-value=1e-08 Score=80.81 Aligned_cols=119 Identities=20% Similarity=0.173 Sum_probs=92.2
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
...+......+...++++++...+.++.. +.++.+|..+|.++.+.|++++|+.+++++++++|+++.+...++.+
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34444566677888999999999988776 67788999999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAK 188 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 188 (202)
+...|+++++...+.......|.|+.....++.+...+.+.++
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc
Confidence 9999999999999988888888888888888888877766553
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.92 E-value=3.3e-08 Score=67.23 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 046569 102 LSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALFRRSQAYLKTSELEKDEADIKRALTIDPNN---RDVKLV 175 (202)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~ 175 (202)
+..++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|...|+.++..+|++ +.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 6799999999999999999999999999999986 566777
Q ss_pred HHHHHHHHHHHH
Q 046569 176 YMELKENQREYA 187 (202)
Q Consensus 176 l~~~~~~~~~~~ 187 (202)
+..+...+++..
T Consensus 82 ~~~~~~~~~~~~ 93 (119)
T TIGR02795 82 LGMSLQELGDKE 93 (119)
T ss_pred HHHHHHHhCChH
Confidence 777766554444
No 103
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.3e-08 Score=80.40 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=110.0
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCC
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--------------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEP 133 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 133 (202)
..+..++-+|..++..++.+.|+..|+++|. +.....+.+.|.-.++.|.|.+|.++|..+|.++|
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 3566778899999999999999999999998 66677889999999999999999999999999999
Q ss_pred CC----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046569 134 LN----VKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSM 197 (202)
Q Consensus 134 ~~----~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (202)
++ .+.|+++|.+...+|+..+|+.+++.++.+||.--.+....+.+...+.+.. .....|.+.
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e-~AV~d~~~a 347 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE-EAVEDYEKA 347 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 75 5679999999999999999999999999999998777777777776666544 233344443
No 104
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.92 E-value=2.2e-08 Score=81.57 Aligned_cols=87 Identities=24% Similarity=0.303 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 046569 105 YLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQR 184 (202)
Q Consensus 105 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 184 (202)
+...|...+..|+|++|+..|.++++++|+++.+|+.+|.+|..+|++++|+.++++++.++|.++.+...+..+...+.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999988887776
Q ss_pred HHHHHHH
Q 046569 185 EYAKYQA 191 (202)
Q Consensus 185 ~~~~~~~ 191 (202)
+......
T Consensus 85 ~~~eA~~ 91 (356)
T PLN03088 85 EYQTAKA 91 (356)
T ss_pred CHHHHHH
Confidence 6654443
No 105
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.90 E-value=2e-08 Score=63.59 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=57.9
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN---------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL 131 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 131 (202)
..+..+...|..++..|+|++|+..|++++. +....++.++|.+|..+|++++|+.++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4577889999999999999999999999998 456788999999999999999999999999876
No 106
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.90 E-value=8.3e-09 Score=90.19 Aligned_cols=111 Identities=18% Similarity=0.252 Sum_probs=101.3
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC--CCChHHHHHHHHHHhcCC
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE--PLNVKALFRRSQAYLKTS 150 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~ 150 (202)
..|.++-..|++.+|+..|.+..+ ..+.++|.|+|.||+.+|+|..|++.|+.++... .+++..+..+|.+++..|
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 567888899999999999999998 5688999999999999999999999999999753 467999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 046569 151 ELEKDEADIKRALTIDPNNRDVKLVYMELKENQRE 185 (202)
Q Consensus 151 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 185 (202)
.+.+|...+.+|+.+.|.|+.+..+++.+...+..
T Consensus 731 ~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 731 KLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred hHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHH
Confidence 99999999999999999999999999888766643
No 107
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=1.8e-07 Score=71.00 Aligned_cols=110 Identities=20% Similarity=0.094 Sum_probs=69.3
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
+..+-.|..+-..|+|++|++.|...++ |.+...+-..-.+...+|+.-+|++....-++.-+.+..+|..++.+|..
T Consensus 87 RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~ 166 (289)
T KOG3060|consen 87 RVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS 166 (289)
T ss_pred hHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3445567777788999999999999888 55555555444455555555555555555555555555666666666666
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046569 149 TSELEKDEADIKRALTIDPNNRDVKLVYMELK 180 (202)
Q Consensus 149 ~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 180 (202)
.|+|++|.-|++..+-+.|-++.....++.+.
T Consensus 167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~ 198 (289)
T KOG3060|consen 167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL 198 (289)
T ss_pred HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 66666666566655555665555555555543
No 108
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3e-09 Score=76.34 Aligned_cols=56 Identities=14% Similarity=0.320 Sum_probs=53.0
Q ss_pred CcchHHHHHHhccccccEEEEEecccc-cccCCcccccCCCceEEEEEEEccccCCC
Q 046569 1 NVNEGLERAIMTMKKEEQATVTISAEY-LCGHEVSELVCANSVLYYEVTLIDFTKEK 56 (202)
Q Consensus 1 ~v~~~~~~~~~~m~~ge~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~~~ 56 (202)
+||.|||+++..|++||+..+.|++.+ ||+.|.++.||+++.+.|+|+|.++....
T Consensus 123 qVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 123 QVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAPPKIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred ceeccHhHHhhhhCcccceEEecCccccCccCCCCCCCCCCeeEEEEEEEEEeecCC
Confidence 699999999999999999999999999 99999999999999999999999987643
No 109
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.88 E-value=5e-08 Score=84.79 Aligned_cols=102 Identities=25% Similarity=0.291 Sum_probs=92.9
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN---GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
.....+.+.+..+...|+|.+|+.+|...++ ..+..+|+++|.||..+|.+++|+.+|.+++.++|++..+...++.
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLAS 491 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHH
Confidence 3456778899999999999999999999999 4557899999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCC
Q 046569 145 AYLKTSELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~~l~p~~ 169 (202)
++.++|+.++|++.+......||.+
T Consensus 492 l~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 492 LYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHhcCCHHHHHHHHhcccCCCccc
Confidence 9999999999999999887666444
No 110
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.88 E-value=3.6e-08 Score=72.19 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLV 175 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 175 (202)
+....+++++|.++...|++++|+.+|++++...|+. ..+++.+|.++...|++++|+..+++++...|.+......
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 6778889999999999999999999999999987754 4689999999999999999999999999999999888877
Q ss_pred HHHHHHHH
Q 046569 176 YMELKENQ 183 (202)
Q Consensus 176 l~~~~~~~ 183 (202)
+..+...+
T Consensus 112 lg~~~~~~ 119 (172)
T PRK02603 112 IAVIYHKR 119 (172)
T ss_pred HHHHHHHc
Confidence 77776554
No 111
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.87 E-value=2.1e-08 Score=62.66 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=63.0
Q ss_pred hHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 77 GNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 77 g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
...++..++|+.|+..+++++. |..+.++..+|.++..+|+|.+|+.+++++++.+|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999 9999999999999999999999999999999999999887766553
No 112
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=6.1e-08 Score=75.32 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=97.0
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHhhhCCCChHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLE---DYSEASSLCTKVLELEPLNVKALFRR 142 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~ 142 (202)
..+..+.-.|..+...+++..|...|.+|+. ++++.++..+|.++.... .-.++...+++++.+||.++.+.+.+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4566778899999999999999999999999 999999999999987664 34688999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 046569 143 SQAYLKTSELEKDEADIKRALTIDPNNRDVKLVY 176 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 176 (202)
|..++..|+|.+|...++..+++.|.+..-+..+
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 9999999999999999999999998774443333
No 113
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.86 E-value=4e-08 Score=71.02 Aligned_cols=96 Identities=25% Similarity=0.264 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCC--
Q 046569 86 YWRASKKYEKATN--GLRLSCYLNNAACKLKLEDY----------SEASSLCTKVLELEPLNVKALFRRSQAYLKTSE-- 151 (202)
Q Consensus 86 ~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-- 151 (202)
|+.|.+.|+.... |.+++.+++=|.+++.+.++ ++|+.-+++||.++|+...+++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5567777777666 88899999988888877544 678889999999999999999999999998865
Q ss_pred ---------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046569 152 ---------LEKDEADIKRALTIDPNNRDVKLVYMELKE 181 (202)
Q Consensus 152 ---------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 181 (202)
|++|..+|++|...+|+|...++.|....+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 889999999999999999999998877643
No 114
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.83 E-value=1.1e-07 Score=80.19 Aligned_cols=130 Identities=20% Similarity=0.214 Sum_probs=106.6
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC------
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN----------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE------ 132 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~----------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------ 132 (202)
-+..+...|..+...++|.+|+..|++|+. |.-..++.|+|..|.+.|+|++|..+|++|+++-
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~ 319 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA 319 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc
Confidence 344555789999999999999999999998 7778889999999999999999999999999873
Q ss_pred --CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046569 133 --PLNVKALFRRSQAYLKTSELEKDEADIKRALTID-----PNN---RDVKLVYMELKENQREYAKYQAEIFGSMLS 199 (202)
Q Consensus 133 --p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~-----p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 199 (202)
|.-...+..++.++..++++++|...+++++++. +.| +..+..++.+.....++.+.+. +|++...
T Consensus 320 ~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~~k~ai~ 395 (508)
T KOG1840|consen 320 SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE-LYKKAIQ 395 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHH
Confidence 2235678889999999999999999999999874 233 4566677777777777776554 7776644
No 115
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=1.8e-08 Score=79.16 Aligned_cols=110 Identities=11% Similarity=0.070 Sum_probs=93.6
Q ss_pred hHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCC---CChHHHHHHHHHHhcCCC
Q 046569 77 GNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEP---LNVKALFRRSQAYLKTSE 151 (202)
Q Consensus 77 g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~g~~~~~~~~ 151 (202)
|.-+|-.++.+-|+.+|.+.+. -.++.++.|+|.|.+.-++++-++..+.+|+.... .-...||++|.+....||
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 3445555666667777777666 67889999999999999999999999999998754 347889999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 152 LEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 152 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
+.-|..||+-++.-||++.++..+++.+..+....
T Consensus 411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI 445 (478)
T ss_pred hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence 99999999999999999999999999987766443
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.80 E-value=1.6e-07 Score=83.53 Aligned_cols=127 Identities=13% Similarity=0.062 Sum_probs=107.6
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh---------
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNV--------- 136 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------- 136 (202)
.....+......+...+++++|+.....+++ |....+|+.+|.++++.+++..+... .++..-+.+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHH
Confidence 3455666778888899999999999999999 99999999999999999998877666 6666655555
Q ss_pred ----------HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046569 137 ----------KALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSML 198 (202)
Q Consensus 137 ----------~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 198 (202)
.+++.+|.||..+|+.++|...|+++++++|.|+.+..+++...... .-++...++++..
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV 176 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAI 176 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999987777 4445555776654
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.76 E-value=1.6e-06 Score=61.70 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=80.5
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
.......|..++..|+|++|+..|..++. .....+...+|.+++..|+|++|+..++. +.-.+..+.++..+|.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 45566789999999999999999999998 34466889999999999999999999966 3444456778889999
Q ss_pred HHhcCCCHHHHHHHHHHHH
Q 046569 145 AYLKTSELEKDEADIKRAL 163 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~ 163 (202)
++...|++++|+..|++|+
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999874
No 118
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.75 E-value=1.4e-07 Score=79.68 Aligned_cols=118 Identities=12% Similarity=0.004 Sum_probs=110.3
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
..+..+....|..++|...+...+..++ |...+.+--.|..+..+|+-++|.+.+..++..++.+.-.|..+|.++..
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 4566778888999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 046569 149 TSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAK 188 (202)
Q Consensus 149 ~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~ 188 (202)
..+|++|+.||+.|+.++|+|.++..-++.++-.++..+-
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999988877653
No 119
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.73 E-value=8.7e-07 Score=64.60 Aligned_cols=100 Identities=15% Similarity=0.272 Sum_probs=92.1
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC--ChHHHHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN---GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL--NVKALFRRSQ 144 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~ 144 (202)
...-+..|+.+...|++.+|...|++++. ...+..+..++.+.+..+++..|...+++..+.+|. .|..+...|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 34456789999999999999999999999 778889999999999999999999999999999985 5888999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCC
Q 046569 145 AYLKTSELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~~l~p~~ 169 (202)
++...|.+.+|...|+.++...|.-
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCCH
Confidence 9999999999999999999999873
No 120
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.72 E-value=4.6e-07 Score=76.39 Aligned_cols=99 Identities=21% Similarity=0.185 Sum_probs=86.7
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh------
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN----------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL------ 131 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~----------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 131 (202)
.....+...|..++.+|+|+.|+..+..|+. +.-.....++|.+|..+++|.+|+..|++|+.+
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 3455666699999999999999999999998 566667778999999999999999999999975
Q ss_pred --CCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 132 --EPLNVKALFRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 132 --~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
+|.-..++.++|.+|...|+|++|..+|++|+++-
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 33446789999999999999999999999999884
No 121
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.72 E-value=3.4e-07 Score=77.91 Aligned_cols=101 Identities=15% Similarity=0.042 Sum_probs=64.0
Q ss_pred HHHHHHHHhHHHHHcCc---HHHHHHHHHHHHH--hHHHHHH--------------------------------------
Q 046569 69 ACERKKHDGNLLFRAGK---YWRASKKYEKATN--GLRLSCY-------------------------------------- 105 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~---~~~A~~~y~~al~--~~~~~~~-------------------------------------- 105 (202)
.+..++-+|..++..+. +..|+.+|++|++ |+++.++
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45666778877776654 7899999999998 4433333
Q ss_pred ------HHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH
Q 046569 106 ------LNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 106 ------~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
.-+|..+...|++++|...+++|+.++| +..+|..+|.++...|+.++|.+.|++|+.++|.++
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 3444444455566666666666666666 355666666666666666666666666666666554
No 122
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=6.1e-07 Score=70.43 Aligned_cols=91 Identities=20% Similarity=0.149 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC-HHHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNN-RDVKLVYM 177 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~ 177 (202)
-..+..|..+|..+....+.+.|...+.+|++.+|+.+.+-..+|.+....|+|+.|++.++.+++.+|+. +++...+.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 35566777888888888888888888888888889888888899999999999999999999999999986 67888888
Q ss_pred HHHHHHHHHHHH
Q 046569 178 ELKENQREYAKY 189 (202)
Q Consensus 178 ~~~~~~~~~~~~ 189 (202)
.+...+.+....
T Consensus 257 ~~Y~~lg~~~~~ 268 (389)
T COG2956 257 ECYAQLGKPAEG 268 (389)
T ss_pred HHHHHhCCHHHH
Confidence 887777665543
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=4e-07 Score=74.79 Aligned_cols=107 Identities=19% Similarity=0.105 Sum_probs=93.0
Q ss_pred HHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCC
Q 046569 73 KKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTS 150 (202)
Q Consensus 73 ~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 150 (202)
+--.|.+++..++..+|++.+.+++. |....+..++|.+|++.|++.+|+..++..+..+|+++..|..+|.+|..+|
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 34578889999999999999999999 8889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 151 ELEKDEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 151 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
+-.+|...+-..+.+.-.-..+...+...
T Consensus 423 ~~~~a~~A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 423 NRAEALLARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred chHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 98888887777777776554444444433
No 124
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.71 E-value=4.2e-07 Score=81.11 Aligned_cols=120 Identities=11% Similarity=0.045 Sum_probs=75.3
Q ss_pred hHHHHHcCcHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHH
Q 046569 77 GNLLFRAGKYWRASKKYEKATNGLR--LSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEK 154 (202)
Q Consensus 77 g~~~~~~~~~~~A~~~y~~al~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 154 (202)
...+...|++.+|+..+++++.|.+ ...+..+|.+|..+|+|++|++.|+++++.+|+++.+++.++.++...++.++
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~e 154 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGV 154 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHH
Confidence 3445566777777777777776333 33333446677777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046569 155 DEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSML 198 (202)
Q Consensus 155 A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 198 (202)
|+..++++...+|.+... ..+..+.....+..+ .-..|++++
T Consensus 155 Al~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~-AL~~~ekll 196 (822)
T PRK14574 155 VLKQATELAERDPTVQNY-MTLSYLNRATDRNYD-ALQASSEAV 196 (822)
T ss_pred HHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH-HHHHHHHHH
Confidence 777777777777776554 444444433222221 444555543
No 125
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.70 E-value=2.2e-06 Score=71.32 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh-HHHHHH
Q 046569 66 KIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNV-KALFRR 142 (202)
Q Consensus 66 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~ 142 (202)
+...+.....+|...+..|+|..|.+...++.+ |.....+...|.++..+|+++.|..++.++.+..|++. ......
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 445677778899999999999999999999988 66666777889999999999999999999999888875 466667
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 143 SQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
+.++...|+++.|...+++..+..|+++.+...+..+....+...
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999888888876665544
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=1e-07 Score=81.48 Aligned_cols=118 Identities=20% Similarity=0.288 Sum_probs=103.4
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
+.+.+..|...+.+++|.++..+++.+++ |.....|+++|.|.++++++..|.++|.+.+.++|++..+|.+++-+|.
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 44556667777788999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 148 KTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
..++-.+|...++.|++-+-.+..+..+...+-.......
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHH
Confidence 9999999999999999999777777777766655554443
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.2e-06 Score=66.55 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=96.1
Q ss_pred hHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCC---
Q 046569 77 GNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSE--- 151 (202)
Q Consensus 77 g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~--- 151 (202)
--..-.+|+.-+||+...+.++ +.+.++|..++.+|+.+|+|+.|.-++++.+-+.|-++-.+.++|.+++-+|.
T Consensus 127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN 206 (289)
T KOG3060|consen 127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN 206 (289)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence 3344556788899999999999 99999999999999999999999999999999999999999999999998875
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 152 LEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 152 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
+.-|..+|.+++++.|.+......+-.+...+.+.
T Consensus 207 ~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 207 LELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred HHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 56699999999999998888877777766666543
No 128
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.69 E-value=2.6e-06 Score=70.62 Aligned_cols=122 Identities=13% Similarity=0.134 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH-hHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHhhhCCCChHH-HHHH
Q 046569 66 KIEACERKKHDGNLLFRAGKYWRASKKYEKATN-GLRLSCYLNN-AACKLKLEDYSEASSLCTKVLELEPLNVKA-LFRR 142 (202)
Q Consensus 66 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~~-a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~ 142 (202)
+.+.+......|...+..|+|+.|.+...++-+ ...+.+++.+ +.+....|+++.|..++.++.+.+|++..+ ....
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 455777888999999999999999988877655 3345665555 445489999999999999999999987544 4455
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 143 SQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
+..+...|++++|...++++.+.+|+++.+...+..+....++-.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999998888776665443
No 129
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=4.4e-07 Score=73.66 Aligned_cols=98 Identities=13% Similarity=-0.018 Sum_probs=86.8
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh----HHHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNV----KALFRRS 143 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~g 143 (202)
.......|..+...|++++|+..+.+++. |..+.++..+|.++...|++++|+..+++++...|.++ ..+..+|
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 34445678889999999999999999999 88889999999999999999999999999999887432 4567899
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCC
Q 046569 144 QAYLKTSELEKDEADIKRALTIDP 167 (202)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~a~~l~p 167 (202)
.++...|++++|...|++++...|
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHhcccc
Confidence 999999999999999999987776
No 130
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.66 E-value=8e-06 Score=62.48 Aligned_cols=117 Identities=20% Similarity=0.222 Sum_probs=98.6
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh---HHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNV---KALFR 141 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 141 (202)
+..++++|....+.|+|.+|++.|....+ |....+...++.++.+.++|+.|+...++-+.+.|+++ .++|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 78899999999999999999999999988 77889999999999999999999999999999999875 46888
Q ss_pred HHHHHhcCCC--------HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHH
Q 046569 142 RSQAYLKTSE--------LEKDEADIKRALTIDPNNR---DVKLVYMELKENQREY 186 (202)
Q Consensus 142 ~g~~~~~~~~--------~~~A~~~~~~a~~l~p~~~---~~~~~l~~~~~~~~~~ 186 (202)
+|.+++..=+ ..+|...|+.++.-.|+.+ .+...+..++.++...
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 8988776533 4579999999999999985 5555555555555443
No 131
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.64 E-value=5.5e-07 Score=74.87 Aligned_cols=129 Identities=16% Similarity=0.013 Sum_probs=103.1
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh--HHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSC--YLNNAACKLKLEDYSEASSLCTKVLELEPLNV--KALFRR 142 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~ 142 (202)
........|..+...|++++|++.+.++++ |+.... ..-+....+..++...++..++++++.+|+++ ..+..+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 456667788899999999999999999999 555432 12233334456888999999999999999999 888899
Q ss_pred HHHHhcCCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046569 143 SQAYLKTSELEKDEADIK--RALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSMLS 199 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~--~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 199 (202)
|.+++..|++++|...|+ .+++..|++.... .+..+...+.+..+ .++.|++-.+
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~-A~~~~~~~l~ 398 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAE-AAAMRQDSLG 398 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHH-HHHHHHHHHH
Confidence 999999999999999999 6888888876644 88888888877554 4567776544
No 132
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.64 E-value=8.3e-07 Score=73.00 Aligned_cols=68 Identities=22% Similarity=0.238 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHhhhC
Q 046569 65 EKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLS---CYLNNAACKLKLEDYSEASSLCTKVLELE 132 (202)
Q Consensus 65 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 132 (202)
..+..+..+.+.|..++..|+|++|+..|++||+ |++.. +|+|+|.||..+|++++|+.++.+++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3455688999999999999999999999999999 77764 59999999999999999999999999983
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=6.3e-07 Score=73.56 Aligned_cols=96 Identities=13% Similarity=0.169 Sum_probs=76.1
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCH
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSEL 152 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 152 (202)
-.+..+...++-.+|+...+++|. |....++...+..++..++++.|+..+++++++.|+...+|+.++.+|..+|++
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence 355666667777888888888887 777888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCCCH
Q 046569 153 EKDEADIKRALTIDPNNR 170 (202)
Q Consensus 153 ~~A~~~~~~a~~l~p~~~ 170 (202)
+.|+..++.+....+.+.
T Consensus 285 e~ALlaLNs~Pm~~~~~k 302 (395)
T PF09295_consen 285 ENALLALNSCPMLTYKDK 302 (395)
T ss_pred HHHHHHHhcCcCCCCccc
Confidence 888887776655544443
No 134
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.57 E-value=1.6e-06 Score=71.80 Aligned_cols=125 Identities=10% Similarity=-0.017 Sum_probs=100.9
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN-GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
........|..+...|+.++|.....++++ +.++.+..-.+.+ ..++++++++.+++.++.+|+++..++.+|.++.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 445556778899999999999999999999 4444444444433 4599999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046569 148 KTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSM 197 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (202)
..+++++|...|++++...|++... ..++.+.....+..+. ...|++-
T Consensus 340 ~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~~~~A-~~~~~~~ 387 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHKPEEA-AAMRRDG 387 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCHHHH-HHHHHHH
Confidence 9999999999999999999997663 3678887777665533 4455543
No 135
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.56 E-value=1.1e-06 Score=69.53 Aligned_cols=127 Identities=19% Similarity=0.221 Sum_probs=93.1
Q ss_pred HHHHHHHHHhHHHHHc-CcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC----
Q 046569 68 EACERKKHDGNLLFRA-GKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL---- 134 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~-~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---- 134 (202)
..+..+.+.|..+... +++++|+..|++|++ .....++.+.|.++.++|+|++|++.|+++....-+
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 3466777888888888 899999999999999 455678899999999999999999999999875321
Q ss_pred --Ch-HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046569 135 --NV-KALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFG 195 (202)
Q Consensus 135 --~~-~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (202)
.. ..++..+.|+...||...|...+++....+|.....+.. .-+...++..+..+...|.
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~-~~~~~l~~A~~~~D~e~f~ 254 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY-KFLEDLLEAYEEGDVEAFT 254 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH-HHHHHHHHHHHTT-CCCHH
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH-HHHHHHHHHHHhCCHHHHH
Confidence 12 345678899999999999999999999999976443222 2344555555544444333
No 136
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=3.8e-06 Score=66.04 Aligned_cols=118 Identities=13% Similarity=0.166 Sum_probs=104.2
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC-----hHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN-----VKALFR 141 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~ 141 (202)
...++.+.|.-|...|-++.|...|...++ .....+...+-.+|....+|++|++...+...+.++. ...|+.
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 377888999999999999999999999998 5666789999999999999999999999999998865 567899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 142 RSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 142 ~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
++..+....+.+.|+..+.+|++-+|+...+-..+.++.-....+
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch
Confidence 999999999999999999999999999988877777776555443
No 137
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.54 E-value=2.3e-07 Score=73.01 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=98.3
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
.+.+.+.|-..+-.++++-++..|++|+. ....++|+|+|.+..-.|++.-|..+|+-++..|+++..++.++|.
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence 34556788999999999999999999999 5778999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 046569 145 AYLKTSELEKDEADIKRALTIDPNNRDVKLVY 176 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 176 (202)
.-.+.|+.++|...++.|-...|...+...++
T Consensus 438 L~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred HHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 99999999999999999999999876665544
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.54 E-value=2.2e-06 Score=66.97 Aligned_cols=82 Identities=10% Similarity=0.031 Sum_probs=68.7
Q ss_pred HHHHHHHHHHH-HHhcCHHHHHHHHHHHhhhCCCC---hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH---HHHH
Q 046569 102 LSCYLNNAACK-LKLEDYSEASSLCTKVLELEPLN---VKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR---DVKL 174 (202)
Q Consensus 102 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~---~~~~ 174 (202)
....+..|..+ +..|+|++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|++++...|+++ .+..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35677788776 56799999999999999999987 68999999999999999999999999999999874 5555
Q ss_pred HHHHHHHHH
Q 046569 175 VYMELKENQ 183 (202)
Q Consensus 175 ~l~~~~~~~ 183 (202)
.+..+...+
T Consensus 222 klg~~~~~~ 230 (263)
T PRK10803 222 KVGVIMQDK 230 (263)
T ss_pred HHHHHHHHc
Confidence 455555444
No 139
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.53 E-value=2.3e-06 Score=69.41 Aligned_cols=123 Identities=12% Similarity=0.007 Sum_probs=89.7
Q ss_pred HHHHhHHHHHcCcHHHHHHHHHHHHH---------------------------------------hHHHHHHHHHHHHHH
Q 046569 73 KKHDGNLLFRAGKYWRASKKYEKATN---------------------------------------GLRLSCYLNNAACKL 113 (202)
Q Consensus 73 ~~~~g~~~~~~~~~~~A~~~y~~al~---------------------------------------~~~~~~~~~~a~~~~ 113 (202)
....|..++..|++++|+..+.+++. |....++..+|.++.
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence 33456667777777777777766654 333345557778889
Q ss_pred HhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHHHHH
Q 046569 114 KLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDV----KLVYMELKENQREYAKY 189 (202)
Q Consensus 114 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~----~~~l~~~~~~~~~~~~~ 189 (202)
..|++++|+..++++++++|+++.++..+|.+++..|++++|...+++++...|.++.. ...++.+.....+..+.
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998754332 23455554444444433
Q ss_pred HHHHHHh
Q 046569 190 QAEIFGS 196 (202)
Q Consensus 190 ~~~~~~~ 196 (202)
. ..|.+
T Consensus 206 ~-~~~~~ 211 (355)
T cd05804 206 L-AIYDT 211 (355)
T ss_pred H-HHHHH
Confidence 2 34444
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.52 E-value=1.6e-07 Score=60.36 Aligned_cols=75 Identities=24% Similarity=0.422 Sum_probs=64.9
Q ss_pred hcCHHHHHHHHHHHhhhCCC--ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 046569 115 LEDYSEASSLCTKVLELEPL--NVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQ 190 (202)
Q Consensus 115 ~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 190 (202)
.|+|+.|+..+++++..+|. +...++.+|.||+..|+|++|+..+++ ...+|.+......++++.-.+.+.++.-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999999999995 466788899999999999999999999 8899999899999998888887776543
No 141
>PRK15331 chaperone protein SicA; Provisional
Probab=98.51 E-value=2.5e-06 Score=61.13 Aligned_cols=89 Identities=11% Similarity=-0.052 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYME 178 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 178 (202)
+..-...+..|.-++..|++++|...|.-+...+|.++..|+.+|-|+..+++|++|+..|-.+..++++|+........
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 67778889999999999999999999999999999999999999999999999999999999999999999887777777
Q ss_pred HHHHHHHHH
Q 046569 179 LKENQREYA 187 (202)
Q Consensus 179 ~~~~~~~~~ 187 (202)
+.-.+.+..
T Consensus 114 C~l~l~~~~ 122 (165)
T PRK15331 114 CQLLMRKAA 122 (165)
T ss_pred HHHHhCCHH
Confidence 766665544
No 142
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=5.4e-07 Score=74.83 Aligned_cols=120 Identities=22% Similarity=0.096 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHhhhCCCChHH
Q 046569 64 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKL---EDYSEASSLCTKVLELEPLNVKA 138 (202)
Q Consensus 64 ~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~ 138 (202)
.+.+..++.++++|+..|..+....|+..|.+++. |....+|.|++.++++. |+...|+.+|..+++++|...++
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 44567788999999999999999999999999998 99999999999999887 47779999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 139 LFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 139 ~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
|++++.++..++.+.+|+++...+....|.|........-+.+.+
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi 492 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDI 492 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccch
Confidence 999999999999999999999888888887765544444344433
No 143
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.7e-06 Score=64.52 Aligned_cols=112 Identities=19% Similarity=0.118 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCC---HHHHHHHHHH
Q 046569 87 WRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSE---LEKDEADIKR 161 (202)
Q Consensus 87 ~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~---~~~A~~~~~~ 161 (202)
+..+.-.+..|. |.+..-|.-+|.+|+.+|++..|...|.+++++.|+++..+..+|.+++...+ -.++...|++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~ 218 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQ 218 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 334444444444 99999999999999999999999999999999999999999999988887653 5689999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 046569 162 ALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSMLS 199 (202)
Q Consensus 162 a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 199 (202)
++.+||+|..++..++.-.-....+.+. ...|..|..
T Consensus 219 al~~D~~~iral~lLA~~afe~g~~~~A-~~~Wq~lL~ 255 (287)
T COG4235 219 ALALDPANIRALSLLAFAAFEQGDYAEA-AAAWQMLLD 255 (287)
T ss_pred HHhcCCccHHHHHHHHHHHHHcccHHHH-HHHHHHHHh
Confidence 9999999999999999877666666533 335655544
No 144
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.49 E-value=2.3e-07 Score=48.92 Aligned_cols=32 Identities=28% Similarity=0.536 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 046569 137 KALFRRSQAYLKTSELEKDEADIKRALTIDPN 168 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 168 (202)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45555555555555555555555555555554
No 145
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.49 E-value=2.5e-05 Score=58.79 Aligned_cols=117 Identities=12% Similarity=0.052 Sum_probs=93.6
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcC-----------HHHHHHHHHHHhhhCC
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLED-----------YSEASSLCTKVLELEP 133 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p 133 (202)
.......|..+++.|+|..|+..|++.+. +....+++.+|.+++.+.. ..+|+..++..++.-|
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence 44567889999999999999999999999 6777899999999877643 3489999999999999
Q ss_pred CChHH-----------------HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 134 LNVKA-----------------LFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 134 ~~~~~-----------------~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
+++.+ -+..|.-|...|.+..|+.-++.+++..|+.+.....+..+.+.-.+.
T Consensus 122 ~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l 191 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL 191 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 87432 234699999999999999999999999999987777666665544443
No 146
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.48 E-value=4.5e-07 Score=50.88 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHH
Q 046569 104 CYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRS 143 (202)
Q Consensus 104 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 143 (202)
++..+|.+|..+|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444555555555555555555555555555555554444
No 147
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.48 E-value=1.3e-07 Score=49.90 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=31.0
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHH
Q 046569 124 LCTKVLELEPLNVKALFRRSQAYLKTSELEKDE 156 (202)
Q Consensus 124 ~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~ 156 (202)
+|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 148
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.48 E-value=3.9e-07 Score=51.10 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 046569 136 VKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYME 178 (202)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 178 (202)
|.+++.+|.+|...|++++|...|+++++.+|+|+.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4688999999999999999999999999999999999988875
No 149
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.48 E-value=4.2e-06 Score=72.17 Aligned_cols=116 Identities=18% Similarity=0.121 Sum_probs=104.4
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKT 149 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 149 (202)
.+...|..+.+.+.-++|..+..+|-. +..+..|+.+|.++...|.+.+|...|..++.++|+++.+...+|.++...
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 344566777778888899889888877 999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 150 SELEKDEA--DIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 150 ~~~~~A~~--~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
|+-.-|.. .+..++++||.|++++..+..+-+.+...+
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 98777777 999999999999999999999988775544
No 150
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.45 E-value=6.1e-07 Score=71.12 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 046569 105 YLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQR 184 (202)
Q Consensus 105 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 184 (202)
.-..|+.|++.|.|++|++||.+++..+|.++..+.+++.+|+.+..|..|..+|..|+.|+.....+.......+..+.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999998766555555555555444
Q ss_pred H
Q 046569 185 E 185 (202)
Q Consensus 185 ~ 185 (202)
.
T Consensus 180 ~ 180 (536)
T KOG4648|consen 180 N 180 (536)
T ss_pred h
Confidence 3
No 151
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.45 E-value=3.2e-06 Score=58.05 Aligned_cols=81 Identities=17% Similarity=0.106 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC---CHHHHHHH
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALFRRSQAYLKTSELEKDEADIKRALTIDPN---NRDVKLVY 176 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~---~~~~~~~l 176 (202)
.+.+++|.++-.+|+.++|+..|++++....+. ..++..+|.++..+|++++|+..+++++.-.|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999976543 678999999999999999999999999999888 66666666
Q ss_pred HHHHHHH
Q 046569 177 MELKENQ 183 (202)
Q Consensus 177 ~~~~~~~ 183 (202)
+.+....
T Consensus 82 Al~L~~~ 88 (120)
T PF12688_consen 82 ALALYNL 88 (120)
T ss_pred HHHHHHC
Confidence 6554444
No 152
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3e-06 Score=68.67 Aligned_cols=97 Identities=18% Similarity=0.037 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046569 87 WRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 87 ~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
++|.+.|++++. |....+...+|..+...|.+..++..+++.+...| +...+..+|.++...+.+++|++.|..|+.
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455555666665 88899999999999999999999999999999888 566788899999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q 046569 165 IDPNNRDVKLVYMELKENQR 184 (202)
Q Consensus 165 l~p~~~~~~~~l~~~~~~~~ 184 (202)
+||+|...+..+.++.+..+
T Consensus 500 ~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 500 QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred cCccchHHHHHHHHHHhccC
Confidence 99999999999988877653
No 153
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=98.43 E-value=7.6e-07 Score=58.50 Aligned_cols=50 Identities=28% Similarity=0.410 Sum_probs=45.7
Q ss_pred CcchHHHHHHhccccccEEEEEecccc-cccCCc-ccccCCCceEEEEEEEc
Q 046569 1 NVNEGLERAIMTMKKEEQATVTISAEY-LCGHEV-SELVCANSVLYYEVTLI 50 (202)
Q Consensus 1 ~v~~~~~~~~~~m~~ge~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~i~l~ 50 (202)
+++.||+.++..|+.||+..+.+++.. ||..+. ...+|+++++.|+|+|.
T Consensus 43 ~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 43 QVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKIPPNSTLVFEIELL 94 (94)
T ss_dssp SSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTTSEEEEEEEEE
T ss_pred ccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCcCCCCeEEEEEEEC
Confidence 478999999999999999999999999 999985 55799999999999874
No 154
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.6e-06 Score=71.19 Aligned_cols=121 Identities=20% Similarity=0.123 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
+..+..|...|.-|+-.|++.+|.++|.+|.- +...++|...|..+...++.+.|+.+|..|-++-|......+.+|.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 45567788899999999999999999999977 9999999999999999999999999999999999998888889999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 145 AYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
=|..++++.-|...|.+|+.+.|+||-+...+.-+.=..+.+.
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhH
Confidence 9999999999999999999999999998888877654444443
No 155
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.42 E-value=6.7e-07 Score=46.98 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC
Q 046569 137 KALFRRSQAYLKTSELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 169 (202)
.+|+.+|.++..+|++++|+.+|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666677777777777777777776666654
No 156
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.40 E-value=5.8e-07 Score=47.33 Aligned_cols=34 Identities=35% Similarity=0.532 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC
Q 046569 102 LSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN 135 (202)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 135 (202)
+.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 157
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.40 E-value=2.7e-05 Score=55.23 Aligned_cols=94 Identities=23% Similarity=0.169 Sum_probs=78.6
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN------------------------GLRLSCYLNNAACKLKLEDYSEASSLCT 126 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 126 (202)
..+...|......++...++..+.+++. .....+...++..+...|++++|+..+.
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3445567777778899999999999988 5566677888888999999999999999
Q ss_pred HHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046569 127 KVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 127 ~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
+++..+|.+..+|..+-.+|...|+...|+..|++...
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988743
No 158
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=1.4e-05 Score=65.75 Aligned_cols=115 Identities=12% Similarity=0.013 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH------------------------------------hHHHHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN------------------------------------GLRLSCYLNNAA 110 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~------------------------------------~~~~~~~~~~a~ 110 (202)
+..+..+++.+++|-...+..+|+++|.++.+ |-+....-.+|.
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 45677788888998888999999999988877 444444555566
Q ss_pred HHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046569 111 CKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKE 181 (202)
Q Consensus 111 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 181 (202)
.|....-+++|+.+++++--+.|+-.+-....+.|+.+.|+|++|++.|+......|.|.++.+-+.++..
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhc
Confidence 66666667888889999888899888888889999999999999999999999999999999888877643
No 159
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=4.6e-06 Score=67.35 Aligned_cols=97 Identities=18% Similarity=0.124 Sum_probs=85.7
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKT 149 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 149 (202)
.+.+.+..+.+.++|..|+...+++|. |.+..+++.+|.++..+++|+.|+.+|+++++++|.|-.+...+..+..+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 456788999999999999999999999 999999999999999999999999999999999999988888888887777
Q ss_pred CCHHHH-HHHHHHHHhcCCC
Q 046569 150 SELEKD-EADIKRALTIDPN 168 (202)
Q Consensus 150 ~~~~~A-~~~~~~a~~l~p~ 168 (202)
.++.+. ...|.+.+..-+.
T Consensus 339 ~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 766654 7778777776553
No 160
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=2.8e-06 Score=72.84 Aligned_cols=104 Identities=21% Similarity=0.228 Sum_probs=85.0
Q ss_pred CcHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHH
Q 046569 84 GKYWRASKKYEKATN---GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIK 160 (202)
Q Consensus 84 ~~~~~A~~~y~~al~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~ 160 (202)
||...=-.+|++|.+ ..+..+...+|......++|.++.++++..++++|-....||.+|-+..+.++++.|..+|.
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 333334444555555 33444556666666677999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 161 RALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 161 ~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
..+.++|++.++.++++...-++.+..
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ 570 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKK 570 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhH
Confidence 999999999999999998877776644
No 161
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=6.7e-06 Score=60.72 Aligned_cols=96 Identities=22% Similarity=0.241 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh-----HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCTKVLELEPLNV-----KALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
.-+-.-|.-++..|+|++|...|..||.+.|..+ -.|.++|.|+..++.++.|+.++.+++++.|.+..+....+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 3445667888999999999999999999999753 46888999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 046569 178 ELKENQREYAKYQAEIFGSMLS 199 (202)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~f~ 199 (202)
.+...+.++... -..||++..
T Consensus 176 eayek~ek~eea-leDyKki~E 196 (271)
T KOG4234|consen 176 EAYEKMEKYEEA-LEDYKKILE 196 (271)
T ss_pred HHHHhhhhHHHH-HHHHHHHHH
Confidence 888887666533 346766643
No 162
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.35 E-value=4.1e-06 Score=48.68 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 046569 137 KALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQRE 185 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 185 (202)
..+|.+|.+++.+|+|++|..+++.+++++|+|..+......+.+.+++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999999999998888765
No 163
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.4e-05 Score=64.96 Aligned_cols=118 Identities=14% Similarity=0.210 Sum_probs=96.9
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH------------------------------------hHHHHHHHHHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN------------------------------------GLRLSCYLNNAACK 112 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~------------------------------------~~~~~~~~~~a~~~ 112 (202)
....+...|..+|..|++.+|+..|+++.. .....-|+--+...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 455667899999999999999999999876 12222233344556
Q ss_pred HHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 113 LKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 113 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
+..++|..|+.+..+++..+|.+..++...|.++...++.++|.-.|+.|..+.|.+-.+...+-...-...+.
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 67889999999999999999999999999999999999999999999999999999988887776665444443
No 164
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=1.4e-05 Score=71.60 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=96.7
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh----------------
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL---------------- 131 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------- 131 (202)
-.+++..|..|-+.|++++|...|+++|+ |.++.+.+|+|..|... +.++|+..+.+|+..
T Consensus 116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k 194 (906)
T PRK14720 116 KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSK 194 (906)
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 35788999999999999999999999999 99999999999999999 999999999998865
Q ss_pred ----CCCChHHHHH--------HH------------HHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 046569 132 ----EPLNVKALFR--------RS------------QAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKEN 182 (202)
Q Consensus 132 ----~p~~~~~~~~--------~g------------~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 182 (202)
+|++....+. ++ .+|...++|++++..++.+++++|.|.-++..+..+.+.
T Consensus 195 ~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 195 LVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 2444333222 24 788889999999999999999999999999999888763
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.33 E-value=1.7e-05 Score=62.74 Aligned_cols=121 Identities=22% Similarity=0.216 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC--CC--
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE--PL-- 134 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~-- 134 (202)
-..+..+...|+.|-..++|.+|...|.++.. .....+|.+.+.+|.+. ++.+|+.++++++++- ..
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcH
Confidence 34456666777888888999999999998877 45556677777777555 8889999999988762 11
Q ss_pred --ChHHHHHHHHHHhcC-CCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHHHH
Q 046569 135 --NVKALFRRSQAYLKT-SELEKDEADIKRALTIDPNN------RDVKLVYMELKENQREYAK 188 (202)
Q Consensus 135 --~~~~~~~~g~~~~~~-~~~~~A~~~~~~a~~l~p~~------~~~~~~l~~~~~~~~~~~~ 188 (202)
-...+..+|.+|... |++++|+..|++|+++...+ ..+...++.+...+.++.+
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 156788889999888 89999999999998884322 2344455555555555543
No 166
>PRK11906 transcriptional regulator; Provisional
Probab=98.32 E-value=1.1e-05 Score=66.54 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHH---H--hHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCC
Q 046569 86 YWRASKKYEKAT---N--GLRLSCYLNNAACKLKL---------EDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSE 151 (202)
Q Consensus 86 ~~~A~~~y~~al---~--~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 151 (202)
...|+.+|.+|+ . |....+|..+|.||+.. .+-.+|.....+|++++|.++.++..+|.++...++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 467888899999 4 88899999999998866 133578888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 152 LEKDEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 152 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
++.|...|++|+.++|+.+.+....+-+
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALV 381 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 9999999999999999998888777764
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=98.30 E-value=6.8e-06 Score=67.83 Aligned_cols=87 Identities=9% Similarity=0.023 Sum_probs=80.9
Q ss_pred CcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046569 84 GKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKR 161 (202)
Q Consensus 84 ~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 161 (202)
..-.+|+..-.+|++ +.++.++..+|.+....++++.|+..+++|+.++|+.+.+|+..|.++...|+.++|..++++
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345677888888888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCH
Q 046569 162 ALTIDPNNR 170 (202)
Q Consensus 162 a~~l~p~~~ 170 (202)
+++++|.-.
T Consensus 398 alrLsP~~~ 406 (458)
T PRK11906 398 SLQLEPRRR 406 (458)
T ss_pred HhccCchhh
Confidence 999999753
No 168
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=2.6e-05 Score=64.18 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=95.9
Q ss_pred HcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046569 82 RAGKYWRASKKYEKATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKR 161 (202)
Q Consensus 82 ~~~~~~~A~~~y~~al~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 161 (202)
..++++.|+..+++..+.. +.+..-++.+++..++-.+|+..+.+++...|.+...+..-+..+...++++.|+...++
T Consensus 181 ~t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~ 259 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD-PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK 259 (395)
T ss_pred hcccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4578999999999977722 456677899999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 046569 162 ALTIDPNNRDVKLVYMELKENQREYAKY 189 (202)
Q Consensus 162 a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 189 (202)
+..+.|++......|+++.-.+.+.+..
T Consensus 260 av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 260 AVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999888776654
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.27 E-value=8.9e-06 Score=62.91 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHH---HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKA---LFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVK 173 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 173 (202)
...+..++..|..++..|+|++|+..|++++...|..+.+ .+.+|.+++..+++++|+..+++.++++|+++.+-
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 3456678889999999999999999999999999987554 59999999999999999999999999999986544
No 170
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.25 E-value=2.4e-05 Score=60.39 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 046569 105 YLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALFRRSQAYLKTSELEKDEADIKRALTIDPNN---RDVKLVYME 178 (202)
Q Consensus 105 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~---~~~~~~l~~ 178 (202)
.++.|.-+++.|+|..|...|..-+..-|+. +.++|++|.+++.+|+|++|...|..+..-.|.. ++....+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7899999999999999999999999999875 8899999999999999999999999999999887 466666666
Q ss_pred HHHHHHHHH
Q 046569 179 LKENQREYA 187 (202)
Q Consensus 179 ~~~~~~~~~ 187 (202)
+..++.+..
T Consensus 224 ~~~~l~~~d 232 (262)
T COG1729 224 SLGRLGNTD 232 (262)
T ss_pred HHHHhcCHH
Confidence 666665544
No 171
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.25 E-value=3.2e-06 Score=44.30 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC
Q 046569 102 LSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN 135 (202)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 135 (202)
+.+++.+|.+|+.+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999975
No 172
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.23 E-value=1.4e-05 Score=68.02 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 104 CYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 104 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
+++.+|..|...|++++|+.+++++|+..|..+..|+..|.++.+.|++.+|...++.|..+|+.|.-+...-++-
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999999999999999987665554443
No 173
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.23 E-value=9.8e-06 Score=71.82 Aligned_cols=86 Identities=10% Similarity=0.156 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046569 102 LSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKE 181 (202)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 181 (202)
...|..+|..|.+.+++..|+.+++.+++.+|.+...|..+|.+|...|.+.-|+..|.+|..++|.+.-.+.-.+.+..
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 33456688899999999999999999999999999999999999999999999999999999999999877777766666
Q ss_pred HHHHHH
Q 046569 182 NQREYA 187 (202)
Q Consensus 182 ~~~~~~ 187 (202)
...++.
T Consensus 642 d~GkYk 647 (1238)
T KOG1127|consen 642 DNGKYK 647 (1238)
T ss_pred HhhhHH
Confidence 555543
No 174
>PRK10941 hypothetical protein; Provisional
Probab=98.22 E-value=2.4e-05 Score=61.16 Aligned_cols=85 Identities=9% Similarity=0.070 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYME 178 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 178 (202)
.-......|+-.+|.+.++|+.|+.+.+.++.++|+++.-+--+|.+|.++|.+..|..+++..++..|+++.+......
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34456778999999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred HHHHH
Q 046569 179 LKENQ 183 (202)
Q Consensus 179 ~~~~~ 183 (202)
+...-
T Consensus 258 l~~l~ 262 (269)
T PRK10941 258 IHSIE 262 (269)
T ss_pred HHHHh
Confidence 66544
No 175
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.21 E-value=4.5e-05 Score=65.21 Aligned_cols=109 Identities=15% Similarity=0.038 Sum_probs=91.0
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
+.++..++...-.++.++|+.+++++|+ |.++.+|.-+|+++-.+++.+.|...|...++..|..+..|..++..-..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 3445555666667888889999999988 89999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 149 TSELEKDEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 149 ~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
.|+..+|...++++..-+|.|....-..-+.
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRM 762 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 9999999999999999999887665544443
No 176
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.16 E-value=1.7e-05 Score=62.97 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=49.9
Q ss_pred HHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHH
Q 046569 78 NLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLE--DYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELE 153 (202)
Q Consensus 78 ~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 153 (202)
..+.+.++++.|.+.+.+.-. ++........|-+.+..| .+.+|.-.|+......+.++..+..++.++..+|+|+
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~ 218 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYE 218 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHH
Confidence 455566666666666655544 222222222222222222 3555555555555444455555555555555555555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 154 KDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 154 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
+|...++.++..+|+++.+..++.-+...+
T Consensus 219 eAe~~L~~al~~~~~~~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 219 EAEELLEEALEKDPNDPDTLANLIVCSLHL 248 (290)
T ss_dssp HHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence 555555555555555555555554444333
No 177
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.14 E-value=3e-05 Score=61.47 Aligned_cols=93 Identities=26% Similarity=0.282 Sum_probs=78.7
Q ss_pred CcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCH-HHHHHHHH
Q 046569 84 GKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSEL-EKDEADIK 160 (202)
Q Consensus 84 ~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~-~~A~~~~~ 160 (202)
..+.+|.-.|++... +..+.+++.++.|++.+|+|++|...+..+++.+|+++.++.+++.+...+|+- +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 369999999999666 677889999999999999999999999999999999999999999999999998 66777888
Q ss_pred HHHhcCCCCHHHHHHH
Q 046569 161 RALTIDPNNRDVKLVY 176 (202)
Q Consensus 161 ~a~~l~p~~~~~~~~l 176 (202)
+....+|+++-+...-
T Consensus 261 qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 261 QLKQSNPNHPLVKDLA 276 (290)
T ss_dssp HCHHHTTTSHHHHHHH
T ss_pred HHHHhCCCChHHHHHH
Confidence 8888899988766544
No 178
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.13 E-value=7e-05 Score=52.58 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC---ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHH
Q 046569 101 RLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL---NVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDV 172 (202)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 172 (202)
.+..+++.|...+..|+|.+|++.++.+....|- ...+.+.+|.+|+..+++++|+..+++.++++|.++.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3567888999999999999999999999998875 47889999999999999999999999999999998643
No 179
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.12 E-value=3.7e-05 Score=65.42 Aligned_cols=95 Identities=17% Similarity=0.078 Sum_probs=67.1
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKT 149 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 149 (202)
.|.-.|..+-..++|++|+.+|.+|+. +++..++.-++....++++++.....-...+++.|.....|+..+.++.-.
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 445566666666777777777777777 677777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcC
Q 046569 150 SELEKDEADIKRALTID 166 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l~ 166 (202)
|++..|....+......
T Consensus 157 g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 77777776666666554
No 180
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.11 E-value=2.7e-05 Score=66.51 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=94.2
Q ss_pred HHHHcCcHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHH
Q 046569 79 LLFRAGKYWRASKKYEKATN-GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEA 157 (202)
Q Consensus 79 ~~~~~~~~~~A~~~y~~al~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 157 (202)
..+.+.+++.|..++.+|-. .....+|+..+.....+++.++|+..++.+++.-|+..+.|+.+|+++.++++.+.|.+
T Consensus 627 le~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred HhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 34566777777777777766 55677888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 046569 158 DIKRALTIDPNNRDVKLVYMELKENQR 184 (202)
Q Consensus 158 ~~~~a~~l~p~~~~~~~~l~~~~~~~~ 184 (202)
.|...+...|...-....++++.+..-
T Consensus 707 aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 707 AYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHhccccCCCCchHHHHHHHHHHHhc
Confidence 999999999999999999999887763
No 181
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.10 E-value=0.00053 Score=46.45 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=75.9
Q ss_pred HHHhHHHHHcCcHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh-------C
Q 046569 74 KHDGNLLFRAGKYWRASKKYEKATN--------------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL-------E 132 (202)
Q Consensus 74 ~~~g~~~~~~~~~~~A~~~y~~al~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~ 132 (202)
...|...+..|.|.+|...|.+|.+ ....-++-.++.++..+|+|++++...+.+|.. +
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 4567777888999999999999998 456678889999999999999999988888843 3
Q ss_pred CC----ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 133 PL----NVKALFRRSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 133 p~----~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
.+ |+.+.+++|.++..+|..++|+..|+++-++
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 33 5778899999999999999999999988654
No 182
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.10 E-value=0.00013 Score=50.34 Aligned_cols=64 Identities=23% Similarity=0.178 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 046569 104 CYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDP 167 (202)
Q Consensus 104 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 167 (202)
.+-..|.....-|+.+.|++.|.+++.+.|..+.+|.++++++.-+|+-++|++++++++++.-
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 3445677788899999999999999999999999999999999999999999999999999954
No 183
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=3e-05 Score=58.08 Aligned_cols=77 Identities=12% Similarity=0.062 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLV 175 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 175 (202)
...+..++.+|..|-++|-+.-|.-++++++.+.|+-+.++..+|.-+..-|+|+.|.+.|..++++||.+.-+..+
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 66788899999999999999999999999999999999999999999999999999999999999999998655544
No 184
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.07 E-value=4.9e-06 Score=67.56 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh----CC
Q 046569 66 KIEACERKKHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL----EP 133 (202)
Q Consensus 66 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p 133 (202)
+..+-+.+-..||.||..|+|+.||..-+.-+. ...-.++.|+|.||.-+|+|+.|+++|..++.+ ..
T Consensus 191 r~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~ 270 (639)
T KOG1130|consen 191 RLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN 270 (639)
T ss_pred HHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence 334455666788999999999999998877766 455678999999999999999999999887755 33
Q ss_pred CC--hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 046569 134 LN--VKALFRRSQAYLKTSELEKDEADIKRALTIDP 167 (202)
Q Consensus 134 ~~--~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 167 (202)
.. ....|.+|..|.-..++++|+.++++-+.+..
T Consensus 271 r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 271 RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 45677889999999999999999888777653
No 185
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.02 E-value=2.8e-05 Score=69.05 Aligned_cols=112 Identities=14% Similarity=0.076 Sum_probs=100.2
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKT 149 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 149 (202)
.+..+|..+.+.+++.+|+..|+-|+. |.+..+|..+|.+|...|.|.-|++.|++|..++|.+.-+-|..+.....+
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~ 643 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDN 643 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHh
Confidence 445689999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 150 SELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
|+|.+|+..+...+.-..........++.+--+.
T Consensus 644 GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 644 GKYKEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999999888766666666665554443
No 186
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.01 E-value=1e-05 Score=42.35 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 046569 137 KALFRRSQAYLKTSELEKDEADIKRALTIDPN 168 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 168 (202)
++|+.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666666666666666666664
No 187
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=9.4e-05 Score=59.24 Aligned_cols=102 Identities=16% Similarity=0.083 Sum_probs=83.0
Q ss_pred HHHHHcCcHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHH
Q 046569 78 NLLFRAGKYWRASKKYEKATN---GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEK 154 (202)
Q Consensus 78 ~~~~~~~~~~~A~~~y~~al~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 154 (202)
..+..+.+|..|+..++-.+. .....+-..+|.|++.+|+|++|+..|..+.+-+..+.+.+.++|-|++-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 346678999999999888877 44556778899999999999999999999999877889999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 155 DEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 155 A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
|...-. -.|.++-....+-.+-.++
T Consensus 110 A~~~~~----ka~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 110 AKSIAE----KAPKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHh----hCCCChHHHHHHHHHHHHh
Confidence 976554 4577776666665554444
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.95 E-value=3.3e-05 Score=62.89 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=82.0
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh----C--CCChH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL----E--PLNVK 137 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~--p~~~~ 137 (202)
...+..+|..+++.|++...+..|+.||. .....+|..+|.+|+.+++|++|+++-..=|.+ . -.-.+
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 45667899999999999999999999999 667778999999999999999999976444333 2 23467
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 138 ALFRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 138 ~~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
+.-++|..+.-+|.|++|+-|+.+-+.+.
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~a 125 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFA 125 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHH
Confidence 77889999999999999999999888765
No 189
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.93 E-value=0.0002 Score=61.07 Aligned_cols=97 Identities=16% Similarity=0.080 Sum_probs=89.7
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
...++-.+..+...|++++|+...++||+ |..+++|...|.++-..|++.+|..+.+.|-.+|+.+.-.....+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 45667788889899999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhcC
Q 046569 148 KTSELEKDEADIKRALTID 166 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~ 166 (202)
+.|+.++|...+.....-+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HCCCHHHHHHHHHhhcCCC
Confidence 9999999999997765554
No 190
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00014 Score=61.46 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=83.0
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH---------------------------------hHHHHHHHHHHHHHHHhcCH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN---------------------------------GLRLSCYLNNAACKLKLEDY 118 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~---------------------------------~~~~~~~~~~a~~~~~~~~~ 118 (202)
.+.-+|..+|+.++|++|+..|+..++ ....+.++|.|.++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 344578899999999999999999976 23677899999999999999
Q ss_pred HHHHHHHHHHhhhC-------CCC--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH
Q 046569 119 SEASSLCTKVLELE-------PLN--------VKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 119 ~~A~~~~~~al~~~-------p~~--------~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
.+|++.+.++++++ ..+ ......++.++..+|+-++|...|...+..+|.|.
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 99999999995542 111 23456689999999999999999999999998874
No 191
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.0007 Score=49.89 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=80.1
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAY 146 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 146 (202)
...+.+-.++..+++++|+..++.++. .....+-.++|.+.+..|.+++|+..++....-+- .+-.-..+|.++
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDil 169 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHH
Confidence 334677888899999999999999997 45555678999999999999999988765433221 123355689999
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCHHHH
Q 046569 147 LKTSELEKDEADIKRALTIDPNNRDVK 173 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a~~l~p~~~~~~ 173 (202)
..+|+-++|...|++++..+++++.-.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s~~~~~ 196 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDASPAARE 196 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCChHHHH
Confidence 999999999999999999986654433
No 192
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=2.3e-05 Score=59.30 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 046569 105 YLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKEN 182 (202)
Q Consensus 105 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 182 (202)
+..-|..++.-+.|..|+++|.++|.++|..+..|-+++.||.+.++++....++.++++++|+..-....+....-.
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 345577788888999999999999999999999999999999999999999999999999999987766666554433
No 193
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.84 E-value=3.6e-05 Score=40.21 Aligned_cols=33 Identities=39% Similarity=0.478 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCTKVLELEPLN 135 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 135 (202)
.+|+.+|.+|..+|++++|+.+++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999853
No 194
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00048 Score=58.34 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=77.3
Q ss_pred HHHhHHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC---------------------
Q 046569 74 KHDGNLLFRAGKYWRASKKYEKATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE--------------------- 132 (202)
Q Consensus 74 ~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------------------- 132 (202)
.+.+.++|+.++.++|+..++ .+++....+..-.|.+.+++++|++|++.|+..++.+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH
Confidence 689999999999999999999 5556667788899999999999999999999986543
Q ss_pred ---------C-CChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 046569 133 ---------P-LNVKALFRRSQAYLKTSELEKDEADIKRA 162 (202)
Q Consensus 133 ---------p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 162 (202)
| ++-..+|+.+-++...|+|.+|++.++++
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2 24567999999999999999999999999
No 195
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.83 E-value=0.00027 Score=57.73 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=80.4
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN--------------------GLRLSCYLNNAACKLKLEDYSEASSLCTKV 128 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 128 (202)
........|...|++++|..|.-.|..||+ .-..-+-..+..||+++++.+.|+.+..+.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 344445677888888888888888888887 122234568999999999999999999999
Q ss_pred hhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 129 LELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 129 l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
+.++|.+...+++.|.|+..+.+|.+|..-+--+.-+
T Consensus 255 I~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998777665544
No 196
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0012 Score=53.15 Aligned_cols=110 Identities=19% Similarity=0.174 Sum_probs=66.9
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh--------------hhC--
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVL--------------ELE-- 132 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--------------~~~-- 132 (202)
......|..+|+.|+|++|+..|+.+.. .-...++.|+|-|++.+|.|.+|.....++- +++
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 3445678899999999999999998887 3445566677777766666666655444331 111
Q ss_pred ----------CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046569 133 ----------PLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELK 180 (202)
Q Consensus 133 ----------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 180 (202)
.+..+-...+|.+++..-.|++|++.|++++.-+|+-......++.+.
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCy 195 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCY 195 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHH
Confidence 112233444555555555566666666666655555555544444443
No 197
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=97.80 E-value=5.6e-05 Score=59.06 Aligned_cols=53 Identities=26% Similarity=0.350 Sum_probs=48.7
Q ss_pred CcchHHHHHHhccccccEEEEEecccc-cccCCcccccCCCceEEEEEEEccccC
Q 046569 1 NVNEGLERAIMTMKKEEQATVTISAEY-LCGHEVSELVCANSVLYYEVTLIDFTK 54 (202)
Q Consensus 1 ~v~~~~~~~~~~m~~ge~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~ 54 (202)
+|++||+.++..|+.|++..+.+++.+ ||..+.. .+|+++++.|+|+|.++..
T Consensus 197 ~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 197 GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKP 250 (269)
T ss_pred CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCCC-CCCCCCcEEEEEEEEEecc
Confidence 479999999999999999999999999 9998854 7999999999999999864
No 198
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.79 E-value=7.3e-05 Score=63.28 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=92.6
Q ss_pred hHHHHHcCcHHHHHHHHHHHHH--hH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHH
Q 046569 77 GNLLFRAGKYWRASKKYEKATN--GL-RLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELE 153 (202)
Q Consensus 77 g~~~~~~~~~~~A~~~y~~al~--~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 153 (202)
|.-+.-.|+...|+.++..|+. |. ......++|+++++.+-...|-..+.+++.+...-|-.++.+|.++..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 3333456889999999999998 43 34457899999999998999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046569 154 KDEADIKRALTIDPNNRDVKLVYMELKE 181 (202)
Q Consensus 154 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 181 (202)
.|++.|+.|++++|+++++...+..+..
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999999999888776
No 199
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.75 E-value=0.00021 Score=62.18 Aligned_cols=122 Identities=27% Similarity=0.396 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHhhhCC
Q 046569 62 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN------GLRLSCYLNNAACKLKL--EDYSEASSLCTKVLELEP 133 (202)
Q Consensus 62 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~------~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p 133 (202)
.....+..+.....+|+.+|..++|..|.-.|..++. .....+..+.+.||+.+ ++|..++..++-++...|
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p 124 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQP 124 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccc
Confidence 5556677888999999999999999999888988887 56667788888888755 699999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 134 LNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
...++++.++.+|...+.++-|+.+..-....+|.+.++..-+.+++..+
T Consensus 125 ~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 125 RISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999977777666666555
No 200
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.73 E-value=3.2e-05 Score=40.68 Aligned_cols=31 Identities=35% Similarity=0.332 Sum_probs=28.9
Q ss_pred HHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHH
Q 046569 92 KYEKATN--GLRLSCYLNNAACKLKLEDYSEAS 122 (202)
Q Consensus 92 ~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~ 122 (202)
.|++||+ |+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3788998 999999999999999999999986
No 201
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.69 E-value=0.0047 Score=50.13 Aligned_cols=121 Identities=15% Similarity=0.199 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCC-CChHHHHH
Q 046569 65 EKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEP-LNVKALFR 141 (202)
Q Consensus 65 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 141 (202)
-+...+.....+|..-+-.|+|.+|.....++-+ +....+|.--+.+-..+|+++.|=.+..++-+..+ +.......
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~lt 158 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELT 158 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHH
Confidence 4556788888999999999999999999999888 56666777778888899999999999999999854 45778888
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 046569 142 RSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQRE 185 (202)
Q Consensus 142 ~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 185 (202)
++..+...|+++.|......+++..|.++++.....++.-.+..
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~ 202 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA 202 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999998888776655543
No 202
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.66 E-value=0.00086 Score=54.27 Aligned_cols=97 Identities=20% Similarity=0.104 Sum_probs=64.6
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN-GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKT 149 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 149 (202)
.-....+..+...|++++|.+....+++ ..++.++...+ ...-+++..=++..++.+...|++|..++.+|..+...
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~ 341 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN 341 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 3344566777888999999999999998 22222222222 12456666666667777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCCC
Q 046569 150 SELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l~p~~ 169 (202)
+.|.+|...|+.++...|+.
T Consensus 342 ~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 342 KLWGKASEALEAALKLRPSA 361 (400)
T ss_pred hHHHHHHHHHHHHHhcCCCh
Confidence 77777777777777776653
No 203
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.65 E-value=0.00062 Score=57.68 Aligned_cols=100 Identities=17% Similarity=0.234 Sum_probs=83.3
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC-ChHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL-NVKALF 140 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 140 (202)
+.+--+...|..+...|+.++|++.|++++. +...-+++.++-|+..+++|++|..++...++.+.. ..-..|
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence 3455567899999999999999999999987 566678999999999999999999999999986653 234455
Q ss_pred HHHHHHhcCCCH-------HHHHHHHHHHHhcCC
Q 046569 141 RRSQAYLKTSEL-------EKDEADIKRALTIDP 167 (202)
Q Consensus 141 ~~g~~~~~~~~~-------~~A~~~~~~a~~l~p 167 (202)
..|.|+...++. ++|...|.++..+-.
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 678999999999 888888888877654
No 204
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0014 Score=50.68 Aligned_cols=110 Identities=17% Similarity=0.113 Sum_probs=81.6
Q ss_pred HHHhHHHHHcCcHHHHHHHHHHHHH-----------------------------hHHHHHHHHHHHHHHHh----cCHHH
Q 046569 74 KHDGNLLFRAGKYWRASKKYEKATN-----------------------------GLRLSCYLNNAACKLKL----EDYSE 120 (202)
Q Consensus 74 ~~~g~~~~~~~~~~~A~~~y~~al~-----------------------------~~~~~~~~~~a~~~~~~----~~~~~ 120 (202)
.--|..+.+.+++++|+........ -+.-..+..+|.+|.++ +.+..
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qd 191 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQD 191 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhh
Confidence 3456778888999999888665322 22223344466665544 35667
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 121 ASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 121 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
|.-.|+..-+..|.++......+.|+..+++|++|...++.++.-++++++...++-.+-...
T Consensus 192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~ 254 (299)
T KOG3081|consen 192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHL 254 (299)
T ss_pred HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 777777777766778888888999999999999999999999999999999988887655444
No 205
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.65 E-value=0.00044 Score=53.11 Aligned_cols=73 Identities=23% Similarity=0.288 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC---hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHH
Q 046569 100 LRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN---VKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDV 172 (202)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 172 (202)
..+.-+++-|...+..|+|++|+..|+.+....|.. .++...++.+++..+++++|+..+++.+.+.|+++.+
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 456788999999999999999999999999988754 6889999999999999999999999999999987543
No 206
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.64 E-value=0.00034 Score=40.62 Aligned_cols=41 Identities=32% Similarity=0.494 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHH
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRS 143 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 143 (202)
++++.+|..+.++|+|.+|..+++.+|+++|+|..+.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 57889999999999999999999999999999988765544
No 207
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.0013 Score=56.43 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=88.9
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKAL 139 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 139 (202)
-....+++.|..+|+..+|..+++.|...+. ..++....+++.||+.+.+.+.|.+.+..|-+.+|.++-..
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 3445678899999999999999999999998 56788999999999999999999999999999999999888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 140 FRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 140 ~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
+..-.+...-+.-++|+.+..+.....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 888888889999999999998876653
No 208
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.61 E-value=0.0011 Score=45.94 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHhcC---HHHHHHHHHHHhh-hCCC-ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 046569 101 RLSCYLNNAACKLKLED---YSEASSLCTKVLE-LEPL-NVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLV 175 (202)
Q Consensus 101 ~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~-~~p~-~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 175 (202)
.....+++|-++.+..+ -.+.+..+...++ -+|. .....|.++..+++.++|+.++.++...++.+|+|.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34556777777776554 4567888888887 4443 47788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 046569 176 YMELKENQRE 185 (202)
Q Consensus 176 l~~~~~~~~~ 185 (202)
...++..+++
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 9998888765
No 209
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.60 E-value=0.0017 Score=57.55 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=87.3
Q ss_pred HHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHH
Q 046569 80 LFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEA 157 (202)
Q Consensus 80 ~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 157 (202)
....++|..|+....+.++ |+..-+....|.++.++|..++|..+++..-...+++...+-.+-.||..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 3456889999999999999 88888999999999999999999977766666777888889999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 158 DIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 158 ~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
+|+++...+|+ .+....+-....+.
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~ 123 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVRE 123 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHH
Confidence 99999999999 65555554443333
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.00088 Score=51.77 Aligned_cols=95 Identities=19% Similarity=0.307 Sum_probs=69.1
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAY 146 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 146 (202)
..|....+.|+-+.|...|++.-+ .....+..|.+.+|.-.++|..|...++++++.||.++.+-.+.|.|+
T Consensus 217 ~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 217 GLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL 296 (366)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence 344444555555555555553322 455566777777777778888888888888888888888888888888
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCC
Q 046569 147 LKTSELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a~~l~p~~ 169 (202)
..+|+..+|+..++.++..+|..
T Consensus 297 lYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 297 LYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHhccCCcc
Confidence 88888888888888888888864
No 211
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.013 Score=44.70 Aligned_cols=116 Identities=18% Similarity=0.231 Sum_probs=84.1
Q ss_pred HHHHHhHHHHHc-CcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC------h
Q 046569 72 RKKHDGNLLFRA-GKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN------V 136 (202)
Q Consensus 72 ~~~~~g~~~~~~-~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~ 136 (202)
.+.+.|..|-.. .+++.||..|+.|-+ .....++..-+..-..+++|.+|++.|+++....-++ .
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 334555555444 688999999999988 4455677777777888999999999999998765443 3
Q ss_pred HHH-HHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHHH
Q 046569 137 KAL-FRRSQAYLKTSELEKDEADIKRALTIDPNNRDVK--LVYMELKENQREYA 187 (202)
Q Consensus 137 ~~~-~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~--~~l~~~~~~~~~~~ 187 (202)
+.| +.-|.|+....+.-.+...+++..+++|.....+ +.+..+...+....
T Consensus 195 KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d 248 (288)
T KOG1586|consen 195 KDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQD 248 (288)
T ss_pred HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhh
Confidence 334 4467999999999999999999999999864333 34444544444433
No 212
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.55 E-value=0.00057 Score=53.92 Aligned_cols=76 Identities=24% Similarity=0.231 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046569 106 LNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKE 181 (202)
Q Consensus 106 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 181 (202)
.+.|.-..+.|+.++|...|..|+.++|+++.++...|......++.-+|-.+|-+|+.++|.|.++..+.++..-
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP 195 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence 3445555678999999999999999999999999999999999999999999999999999999988877766433
No 213
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.50 E-value=0.00075 Score=57.82 Aligned_cols=65 Identities=15% Similarity=-0.014 Sum_probs=58.6
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVK 137 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 137 (202)
.+...|..+...|++++|...|++|+. | ...+|..+|.++...|++++|++.|.+|++++|.++.
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 344567777788999999999999999 6 5789999999999999999999999999999998875
No 214
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.47 E-value=0.00018 Score=37.05 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 046569 138 ALFRRSQAYLKTSELEKDEADIKRALTIDPN 168 (202)
Q Consensus 138 ~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 168 (202)
+++++|.++...|++++|...|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555443
No 215
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.45 E-value=0.00013 Score=38.76 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH
Q 046569 139 LFRRSQAYLKTSELEKDEADIKR 161 (202)
Q Consensus 139 ~~~~g~~~~~~~~~~~A~~~~~~ 161 (202)
|.++|.+|...|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444
No 216
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.44 E-value=0.0024 Score=56.81 Aligned_cols=90 Identities=10% Similarity=-0.008 Sum_probs=63.0
Q ss_pred HhHHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHH
Q 046569 76 DGNLLFRAGKYWRASKKYEKATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKD 155 (202)
Q Consensus 76 ~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A 155 (202)
....+.+.|++++|.+.+.+.-.......|..+...+...|+++.|...++++++++|+++..|..++.+|...|++++|
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 34455566777777766655422223445777777777777888888888888888887777788888888888888888
Q ss_pred HHHHHHHHhc
Q 046569 156 EADIKRALTI 165 (202)
Q Consensus 156 ~~~~~~a~~l 165 (202)
.+.++...+.
T Consensus 548 ~~v~~~m~~~ 557 (697)
T PLN03081 548 AKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHc
Confidence 8887766544
No 217
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.44 E-value=0.012 Score=42.79 Aligned_cols=90 Identities=32% Similarity=0.397 Sum_probs=53.0
Q ss_pred HHHHcCcHHHHHHHHHHHHH--h---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC-ChHHHHHHHHHHhcCCCH
Q 046569 79 LLFRAGKYWRASKKYEKATN--G---LRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL-NVKALFRRSQAYLKTSEL 152 (202)
Q Consensus 79 ~~~~~~~~~~A~~~y~~al~--~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 152 (202)
.++..+++..|+..|.+++. + .....+..++..+...+++..|+..+.+++...+. ....+..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555666666666666654 2 33444445555555556666666666666666665 466666666666666666
Q ss_pred HHHHHHHHHHHhcCCC
Q 046569 153 EKDEADIKRALTIDPN 168 (202)
Q Consensus 153 ~~A~~~~~~a~~l~p~ 168 (202)
+.|...+..++...|.
T Consensus 219 ~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 219 EEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHHHHhhCcc
Confidence 6666666666666655
No 218
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.43 E-value=0.00033 Score=36.03 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCTKVLELEPLN 135 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 135 (202)
.+++++|.++.++|++++|+..+++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 468899999999999999999999999998864
No 219
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.42 E-value=0.00029 Score=37.43 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhhC
Q 046569 104 CYLNNAACKLKLEDYSEASSLCTKVLELE 132 (202)
Q Consensus 104 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 132 (202)
++.++|.+|..+|+|++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999977654
No 220
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.42 E-value=0.0024 Score=42.78 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=74.0
Q ss_pred HhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcC-----------HHHHHHHHHHHhhhCCCChHHH
Q 046569 76 DGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLED-----------YSEASSLCTKVLELEPLNVKAL 139 (202)
Q Consensus 76 ~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 139 (202)
.+..+|.+|++-+|+++.+..+. ...+.++...|.++..+.. .-.++++++++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678999999999999999998 2333667777777765532 2378899999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 140 FRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 140 ~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
+.+|.-+-....|++++...++++...
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999988888888999999988888763
No 221
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.40 E-value=0.00029 Score=35.24 Aligned_cols=30 Identities=33% Similarity=0.584 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 046569 138 ALFRRSQAYLKTSELEKDEADIKRALTIDP 167 (202)
Q Consensus 138 ~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 167 (202)
+++++|.++...+++++|..+|++++.++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 222
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.40 E-value=0.00025 Score=58.72 Aligned_cols=68 Identities=26% Similarity=0.272 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
..+-+.+.-.+.-+.|+.|+..|.+|++++|+.+..+-+++.++...++|..|+.++.+|++++|...
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~ 72 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI 72 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh
Confidence 34456677888999999999999999999999999999999999999999999999999999999863
No 223
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0031 Score=49.70 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=74.3
Q ss_pred HHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHH
Q 046569 80 LFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEA 157 (202)
Q Consensus 80 ~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 157 (202)
+.+..+|.+||++..--.+ |.....+.-+|.||....+|..|-++|++.-.+.|...+..+.-++.+++-+.+.+|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4677889999999887777 77788899999999999999999999999999999999999999999999999999987
Q ss_pred HHHHH
Q 046569 158 DIKRA 162 (202)
Q Consensus 158 ~~~~a 162 (202)
.....
T Consensus 100 V~~~~ 104 (459)
T KOG4340|consen 100 VAFLL 104 (459)
T ss_pred HHHHh
Confidence 66543
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.021 Score=44.92 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=94.4
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHH--------------------
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKV-------------------- 128 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-------------------- 128 (202)
.....+|......+++.+|...|..++. +.+..+...++.||...|+.+.|...+...
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 3445678889999999999999999999 888999999999999999997766655441
Q ss_pred --------------hhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHH
Q 046569 129 --------------LELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPN--NRDVKLVYMELKENQR 184 (202)
Q Consensus 129 --------------l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~ 184 (202)
+..+|++..+-+.+|..+...|+.+.|++.+-..+..+.. |..+++.+-.+-..+.
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 1225899999999999999999999999999988888654 5677877777766664
No 225
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.34 E-value=0.00037 Score=52.65 Aligned_cols=60 Identities=25% Similarity=0.339 Sum_probs=55.3
Q ss_pred HHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH
Q 046569 111 CKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 111 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
...+.++.+.|.+.|++++++.|.+...|+++|......|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345678999999999999999999999999999999999999999999999999999873
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.34 E-value=0.0086 Score=43.62 Aligned_cols=98 Identities=33% Similarity=0.379 Sum_probs=86.9
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH--hH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN--GL-RLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
......+..+...+++..|+..+.+++. +. ....+.+++.++...+.+..|+..+..++...|.....+..++..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 168 EALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 3344455557778899999999999999 55 58899999999999999999999999999999998888888998888
Q ss_pred cCCCHHHHHHHHHHHHhcCCC
Q 046569 148 KTSELEKDEADIKRALTIDPN 168 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~p~ 168 (202)
..+.++.+...+.+++..+|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 248 ELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcCCHHHHHHHHHHHHHhCcc
Confidence 888899999999999999997
No 227
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.33 E-value=0.00072 Score=56.33 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=90.2
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH---------hH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHhh-hC-----
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN---------GL--RLSCYLNNAACKLKLEDYSEASSLCTKVLE-LE----- 132 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~---------~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~----- 132 (202)
+..+.-..+..|-.|+|.+|.+.+...-. |. .-..|+|+|-+++.++.|..+..+|.+|++ .+
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 33445567778888999999888765422 32 333568999999999999999999999996 21
Q ss_pred ---C---------CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046569 133 ---P---------LNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELK 180 (202)
Q Consensus 133 ---p---------~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 180 (202)
| ......|+.|..|...|+--.|.+||.++....-.||.++-.++.+-
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 23578999999999999999999999999999999999999998864
No 228
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.29 E-value=0.00054 Score=34.18 Aligned_cols=33 Identities=42% Similarity=0.536 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCTKVLELEPLN 135 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 135 (202)
.++.++|.++..+++++.|+.++..++.++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578899999999999999999999999988853
No 229
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.28 E-value=0.018 Score=53.58 Aligned_cols=86 Identities=14% Similarity=0.024 Sum_probs=40.3
Q ss_pred HHHHcCcHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC-CCChHHHHHHHHHHhcCCCHHH
Q 046569 79 LLFRAGKYWRASKKYEKATN---GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE-PLNVKALFRRSQAYLKTSELEK 154 (202)
Q Consensus 79 ~~~~~~~~~~A~~~y~~al~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 154 (202)
.+.+.|++++|...|....+ +.....|+.+...|.+.|++++|+..|....+.. ..+...|..+..++...|++++
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 34455555555555555544 2333444455555555555555555554444331 1123344444444444444444
Q ss_pred HHHHHHHHHh
Q 046569 155 DEADIKRALT 164 (202)
Q Consensus 155 A~~~~~~a~~ 164 (202)
|.+.++...+
T Consensus 668 A~~l~~eM~k 677 (1060)
T PLN03218 668 AFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 230
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.27 E-value=0.0019 Score=47.13 Aligned_cols=57 Identities=16% Similarity=0.065 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcC-----------HHHHHHHHHHHhhhCCCChHHHH
Q 046569 84 GKYWRASKKYEKATN--GLRLSCYLNNAACKLKLED-----------YSEASSLCTKVLELEPLNVKALF 140 (202)
Q Consensus 84 ~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~ 140 (202)
..+++|+..|++||. |....++.++|.+|..++. |++|..+|++|+..+|++....-
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 356777888888877 9999999999999988764 68899999999999998765433
No 231
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0039 Score=49.66 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 046569 100 LRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN----VKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLV 175 (202)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 175 (202)
..+.-|-.-|+-|++-++|..|+.+|.+.|.....+ ...|.++|-|.+.+|+|..|+.++.+++.++|.+.-+...
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 455567788999999999999999999999875443 5679999999999999999999999999999998655554
Q ss_pred HHHHHHHHHH
Q 046569 176 YMELKENQRE 185 (202)
Q Consensus 176 l~~~~~~~~~ 185 (202)
=+++--.++.
T Consensus 159 ~Akc~~eLe~ 168 (390)
T KOG0551|consen 159 GAKCLLELER 168 (390)
T ss_pred hhHHHHHHHH
Confidence 4444444433
No 232
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.23 E-value=0.024 Score=52.79 Aligned_cols=90 Identities=9% Similarity=-0.019 Sum_probs=48.5
Q ss_pred HhHHHHHcCcHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh----CCCChHHHHHHHHHHhc
Q 046569 76 DGNLLFRAGKYWRASKKYEKATN---GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL----EPLNVKALFRRSQAYLK 148 (202)
Q Consensus 76 ~g~~~~~~~~~~~A~~~y~~al~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~g~~~~~ 148 (202)
....+.+.|++++|+..|..... ..+...|+.+...|.+.|++++|.+.+...... .| +...|..+..+|.+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k 591 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACAN 591 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHH
Confidence 33445556666666666665554 223445555555555566666666655555432 22 33445555555555
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 046569 149 TSELEKDEADIKRALTID 166 (202)
Q Consensus 149 ~~~~~~A~~~~~~a~~l~ 166 (202)
.|++++|...|+...+.+
T Consensus 592 ~G~ldeA~elf~~M~e~g 609 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYN 609 (1060)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 556665655555555553
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.23 E-value=0.0081 Score=48.60 Aligned_cols=89 Identities=25% Similarity=0.297 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH---
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN-----VKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR--- 170 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~--- 170 (202)
.....++.|++..+-++.+|.+++.++.-.+.+.... -..+..+|.++..++.|+++++.|++|+...-++.
T Consensus 80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~ 159 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM 159 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce
Confidence 4556788899999999999999999888888765433 36777799999999999999999999999865432
Q ss_pred ---HHHHHHHHHHHHHHHHH
Q 046569 171 ---DVKLVYMELKENQREYA 187 (202)
Q Consensus 171 ---~~~~~l~~~~~~~~~~~ 187 (202)
.+-..+..+-.+++...
T Consensus 160 LElqvcv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 160 LELQVCVSLGSLFAQLKDYE 179 (518)
T ss_pred eeeehhhhHHHHHHHHHhhh
Confidence 33344455555554443
No 234
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0051 Score=47.81 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYME 178 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 178 (202)
........++=..+...++++.|..+.++.+.++|.++.-+--+|.+|.++|.+.-|+.+++..++..|+++.+......
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 45566677888889999999999999999999999999999999999999999999999999999999999888776666
Q ss_pred HHHHH
Q 046569 179 LKENQ 183 (202)
Q Consensus 179 ~~~~~ 183 (202)
+.+..
T Consensus 258 l~~l~ 262 (269)
T COG2912 258 LLELR 262 (269)
T ss_pred HHHHH
Confidence 55443
No 235
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.20 E-value=0.0056 Score=39.76 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=52.4
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHH
Q 046569 121 ASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNN--RDVKLVYMELKENQREY 186 (202)
Q Consensus 121 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~~~ 186 (202)
.+..+.+.+..+|+++.+.+.+|..+...|++++|++.+-.++..+|+. ..+++.+-.+-..+...
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4567888899999999999999999999999999999999999998765 67888887777766553
No 236
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0052 Score=47.13 Aligned_cols=80 Identities=20% Similarity=0.156 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh--------CCC----------ChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046569 100 LRLSCYLNNAACKLKLEDYSEASSLCTKVLEL--------EPL----------NVKALFRRSQAYLKTSELEKDEADIKR 161 (202)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~----------~~~~~~~~g~~~~~~~~~~~A~~~~~~ 161 (202)
...+++...|+-+++.|+|.+|...|..|+.. .|. ....+.+.++|+...|+|-++++++..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 45678889999999999999999999998743 232 345688999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHH
Q 046569 162 ALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 162 a~~l~p~~~~~~~~l~~~ 179 (202)
++..+|.|..+....++.
T Consensus 256 iL~~~~~nvKA~frRakA 273 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKA 273 (329)
T ss_pred HHhcCCchHHHHHHHHHH
Confidence 999999997766655543
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.13 E-value=0.087 Score=41.59 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHcC-cHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHhcCHHHHH
Q 046569 60 KMDTHEKIEACERKKHDGNLLFRAG-KYWRASKKYEKATN----------------GLRLSCYLNNAACKLKLEDYSEAS 122 (202)
Q Consensus 60 ~~~~~~~~~~a~~~~~~g~~~~~~~-~~~~A~~~y~~al~----------------~~~~~~~~~~a~~~~~~~~~~~A~ 122 (202)
.+++......+..+++-|...+.++ ++..|+.++++|++ .....++..++.+|+..+.++...
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVE 104 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 4466677788999999999999999 99999999999988 466778899999999988776433
Q ss_pred H---HHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Q 046569 123 S---LCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDP-NNRDVKLVYMELKENQRE 185 (202)
Q Consensus 123 ~---~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~~~~~~~~ 185 (202)
. ..+.+-.-.|+.+..++..-.++...++.+.+.+.+.+.+.--+ ........+..++...+.
T Consensus 105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~ 171 (278)
T PF08631_consen 105 KALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK 171 (278)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh
Confidence 3 33344444577777776666666668999999999999888765 444455555555444433
No 238
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.0036 Score=49.40 Aligned_cols=66 Identities=11% Similarity=0.045 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 100 LRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
+.+....|.|-+.++.|+|+.|++-|+.+++...-++-.-|+++.++++.++++.|+......++.
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 566677888888888899999999999999988888888888999999999999988877666554
No 239
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.11 E-value=0.01 Score=52.81 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 104 CYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 104 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
.|..+...|.+.|++++|.+.+++.- ..| +...|..+..++...|+++.|...+++.+.++|++......+..+....
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 45555556666666666666554421 222 4455666666777777777777777777777777655555555444433
No 240
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.032 Score=43.40 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=89.4
Q ss_pred HHHhHHHHHcCcHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh----hC--CCChHHHHHHHH
Q 046569 74 KHDGNLLFRAGKYWRASKKYEKATN---GLRLSCYLNNAACKLKLEDYSEASSLCTKVLE----LE--PLNVKALFRRSQ 144 (202)
Q Consensus 74 ~~~g~~~~~~~~~~~A~~~y~~al~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~~g~ 144 (202)
+-..+.+...+.|.-.+..|.+.++ +..+.+...+|.+.++.|+-+.|..+++.+-+ ++ ..+...+.+.+.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 4455667778899999999999999 77888899999999999999999999995543 22 345667888899
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046569 145 AYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELK 180 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 180 (202)
+|...++|..|...|.+.+..||.++.+....+.|.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL 296 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence 999999999999999999999999987777766653
No 241
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.07 E-value=0.02 Score=45.31 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=75.8
Q ss_pred HhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCH
Q 046569 76 DGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLK-LEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSEL 152 (202)
Q Consensus 76 ~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 152 (202)
..+..-+.+..+.|...|.+|.+ .....+|...|..-+. .++.+.|...|+.+++.-|.++..|.....-+...++.
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~ 86 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI 86 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH
Confidence 33444455558889999999988 5567888888888666 56777799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCH
Q 046569 153 EKDEADIKRALTIDPNNR 170 (202)
Q Consensus 153 ~~A~~~~~~a~~l~p~~~ 170 (202)
+.|...|++++..-|.+.
T Consensus 87 ~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 87 NNARALFERAISSLPKEK 104 (280)
T ss_dssp HHHHHHHHHHCCTSSCHH
T ss_pred HHHHHHHHHHHHhcCchh
Confidence 999999999999877765
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.055 Score=41.65 Aligned_cols=101 Identities=19% Similarity=0.143 Sum_probs=77.5
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC-----CCCh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE-----PLNV 136 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~ 136 (202)
+..+...++.|...++|++|...+.+|++ -+...+|-..+.....+..|.++.+.++++..+- |+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 44555556667778999999999999997 2445567778888889999999999999998773 4444
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH
Q 046569 137 KALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
..-..++-=.....+-++|++.|++++.+-..+.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~d 144 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDD 144 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Confidence 4455555556677889999999999998865543
No 243
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.04 E-value=0.011 Score=54.05 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=76.4
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC--------
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL-------- 134 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------- 134 (202)
......|..+...|++++|...+.+++. .....++.++|.++...|+++.|...+.+++.+...
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 3445677888889999999999999987 223446788899999999999999999998876221
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 046569 135 NVKALFRRSQAYLKTSELEKDEADIKRALTIDP 167 (202)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 167 (202)
....+..+|.++...|++++|...+.+++.+..
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 123456788899999999999999999888643
No 244
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=97.04 E-value=0.011 Score=37.03 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=54.7
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL 131 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 131 (202)
..+....+.|..+|...+.++|+..+.++++ +....++-.+..+|...|+|.+.+.+...=+++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999999999999999 677778888889999999999999887655543
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.03 E-value=0.02 Score=42.10 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=79.0
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCC--CCh----HH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEP--LNV----KA 138 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~ 138 (202)
-..+...|+.+.+.|+++.|++.|.++.+ ....+.+.++..+.+..++|..+..+..++-.+-. .++ ..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 45677899999999999999999999888 67888899999999999999999999998876532 222 23
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 139 LFRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 139 ~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
....|..+...++|..|...|-.+..-.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 4446888899999999999986665444
No 246
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.01 E-value=0.032 Score=46.91 Aligned_cols=92 Identities=20% Similarity=0.247 Sum_probs=77.4
Q ss_pred HHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc
Q 046569 89 ASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSE-LEKDEADIKRALTI 165 (202)
Q Consensus 89 A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~-~~~A~~~~~~a~~l 165 (202)
=+.+|..|.. +.++.+|.+-.....+.+.+.+--..|.+++..+|+++..|..-|.-.+..+. .+.|.+.|.+++..
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 3455777777 66778888776666677779999999999999999999999999988777776 99999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 046569 166 DPNNRDVKLVYMELK 180 (202)
Q Consensus 166 ~p~~~~~~~~l~~~~ 180 (202)
+|+++.+...+-+..
T Consensus 170 npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 170 NPDSPKLWKEYFRME 184 (568)
T ss_pred CCCChHHHHHHHHHH
Confidence 999998888776543
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.97 E-value=0.023 Score=47.75 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHHHH---------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC--C
Q 046569 85 KYWRASKKYEKATN---------------------------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL--N 135 (202)
Q Consensus 85 ~~~~A~~~y~~al~---------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~ 135 (202)
-..+|...|.+|++ .....+-..+|.|..++|+.++|++.+...++..|. +
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 36888888998888 112445678999999999999999999999988774 5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHH
Q 046569 136 VKALFRRSQAYLKTSELEKDEADIKRALTI-DPNNRDVKLVYMEL 179 (202)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l-~p~~~~~~~~l~~~ 179 (202)
...++++..++..++.|.++...+.+.-++ -|.....-..-+.+
T Consensus 295 l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 295 LNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 779999999999999999999999886544 24444443333333
No 248
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.95 E-value=0.019 Score=52.51 Aligned_cols=96 Identities=18% Similarity=0.117 Sum_probs=78.2
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH---h-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC-----Ch
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN---G-------LRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL-----NV 136 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~---~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~ 136 (202)
.+...|..++..|+++.|...+.+++. . ....++..+|.++...|++++|...+.+++.+... ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 445668888999999999999999988 1 12334667899999999999999999999876331 35
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 046569 137 KALFRRSQAYLKTSELEKDEADIKRALTIDP 167 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 167 (202)
.++..+|.++...|++++|...+.++..+.+
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 5677789999999999999999999987643
No 249
>PLN03077 Protein ECB2; Provisional
Probab=96.94 E-value=0.027 Score=51.44 Aligned_cols=90 Identities=9% Similarity=-0.059 Sum_probs=41.7
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCC--CChHHHHHHHHHH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN---GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEP--LNVKALFRRSQAY 146 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~~ 146 (202)
.+......+.+.|+.++|+..|++..+ ..+...|..+-.++.+.|.+++|...|+...+..+ .+...|..+..++
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 444455555666666666666666555 11122222222334445555555555554442211 1233444444444
Q ss_pred hcCCCHHHHHHHHHH
Q 046569 147 LKTSELEKDEADIKR 161 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~ 161 (202)
.+.|++++|.+.+++
T Consensus 636 ~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 636 GRAGKLTEAYNFINK 650 (857)
T ss_pred HhCCCHHHHHHHHHH
Confidence 555555544444443
No 250
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.12 Score=39.66 Aligned_cols=99 Identities=21% Similarity=0.205 Sum_probs=72.8
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC------
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN------ 135 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 135 (202)
+..+...||.+--.++|..|=..|.++-. .+....|..-+.||.+ .+..+|+.++++++++-.+-
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~a 112 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMA 112 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444555666677888888888888876 4566778888888844 48899999999998876532
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHhcCCCC
Q 046569 136 VKALFRRSQAYLKT-SELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 136 ~~~~~~~g~~~~~~-~~~~~A~~~~~~a~~l~p~~ 169 (202)
.+-+..+|.+|..- .++++|+.+|+.+-+....+
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE 147 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence 44566788888776 88899999999888775443
No 251
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.88 E-value=0.038 Score=41.92 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=71.1
Q ss_pred HHHHHcCcHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHhhhCCC------C
Q 046569 78 NLLFRAGKYWRASKKYEKATN---------GLRLSCYLNNAACKLKLEDYS-------EASSLCTKVLELEPL------N 135 (202)
Q Consensus 78 ~~~~~~~~~~~A~~~y~~al~---------~~~~~~~~~~a~~~~~~~~~~-------~A~~~~~~al~~~p~------~ 135 (202)
..+-....+++|+..|.-|+- ...+.++..+|=+|..+++.+ .|++.|.++++.... .
T Consensus 85 ~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~ 164 (214)
T PF09986_consen 85 RDFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDE 164 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchH
Confidence 345556789999999999987 355677888888888888855 555566666654422 2
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC
Q 046569 136 VKALFRRSQAYLKTSELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 169 (202)
....|.+|....+.|++++|...|.+++..--.+
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 5788999999999999999999999999875443
No 252
>PLN03077 Protein ECB2; Provisional
Probab=96.86 E-value=0.036 Score=50.64 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=50.9
Q ss_pred HHHHcCcHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHH
Q 046569 79 LLFRAGKYWRASKKYEKATN----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEK 154 (202)
Q Consensus 79 ~~~~~~~~~~A~~~y~~al~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 154 (202)
.+.+.|+.++|...|....+ ......|..+..++.+.|++++|.+.+++. .+.| ++..|-.+-.++...++.+.
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHH
Confidence 35555666666666666553 223345555666666666666666555543 1233 23344444444444555555
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 155 DEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 155 A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
+....+++++++|++......+..+
T Consensus 676 ~e~~a~~l~~l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 676 GELAAQHIFELDPNSVGYYILLCNL 700 (857)
T ss_pred HHHHHHHHHhhCCCCcchHHHHHHH
Confidence 5555555555555555444444443
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.041 Score=44.26 Aligned_cols=115 Identities=11% Similarity=0.036 Sum_probs=92.4
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh-CCCC---hHHHHHHHHH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL-EPLN---VKALFRRSQA 145 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~~g~~ 145 (202)
.....+.+++.+|++.+|.....+.+. |....++...-.+++.+|+...-...+.+++-. +|+- ...+=..+..
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 334456778889999999999999999 888888888888899999999999999999877 5554 3334446788
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
+...|-|++|...-.++++++|.|.-+.-.++.+.+---+.
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~ 225 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH 225 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence 89999999999999999999999987777777665544333
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.82 E-value=0.009 Score=48.35 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=81.0
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC-----
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN------------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE----- 132 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----- 132 (202)
.+.+...|..+-..+++++|+-...+|.+ ....-+++.++..+..+|..-.|.++|+++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 44566788888888999999999998887 4556678899999999999999999999998763
Q ss_pred -CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 133 -PLNVKALFRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 133 -p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
+.+.....-+|.+|...|+.+.|..-|+.|...-
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 2345667778999999999999999999998764
No 255
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.80 E-value=0.063 Score=44.78 Aligned_cols=73 Identities=10% Similarity=0.159 Sum_probs=59.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHH
Q 046569 109 AACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPN----NRDVKLVYMELKENQR 184 (202)
Q Consensus 109 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~----~~~~~~~l~~~~~~~~ 184 (202)
|..++..|+|.++.-+..=..+++| .+.++-.+|.|+....+|++|..++.. +-|+ |..+.+.+..+.+.+.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhhh
Confidence 4446788999999999999999999 999999999999999999999999964 4443 3566777777777664
Q ss_pred H
Q 046569 185 E 185 (202)
Q Consensus 185 ~ 185 (202)
+
T Consensus 545 k 545 (549)
T PF07079_consen 545 K 545 (549)
T ss_pred h
Confidence 4
No 256
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.0021 Score=53.72 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=69.2
Q ss_pred HHHHhHHHHHcCcHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC
Q 046569 73 KKHDGNLLFRAGKYWRASKKYEKATN--------------------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE 132 (202)
Q Consensus 73 ~~~~g~~~~~~~~~~~A~~~y~~al~--------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 132 (202)
+.+.|-++|+.+.|.-++.+|.+|+. ...-.+.+|.|..|+..|+.-.|.++|.+++..-
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 35788899999999999999999994 4566789999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhcC
Q 046569 133 PLNVKALFRRSQAYLKT 149 (202)
Q Consensus 133 p~~~~~~~~~g~~~~~~ 149 (202)
..+|..|.+++.|...-
T Consensus 366 h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 366 HRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcCcHHHHHHHHHHHHH
Confidence 99999999999887643
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.04 Score=42.35 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=81.2
Q ss_pred HHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh----hhC--CCChHHH
Q 046569 74 KHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVL----ELE--PLNVKAL 139 (202)
Q Consensus 74 ~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~--p~~~~~~ 139 (202)
.+++-...+..+.++|+.+|++++. ....+.+...+.++.++..|.+|-..+.+-. +.+ ++--+++
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~ 193 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAY 193 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence 3445555567789999999999988 5667788888999999999999887776543 223 2334456
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046569 140 FRRSQAYLKTSELEKDEADIKRALTIDPNN-RDVKLVYMELKENQREYAKYQAEIFGSM 197 (202)
Q Consensus 140 ~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (202)
.....+|...++|..|..+++..-++..-+ ++-- ..+.+.+..+.+.+-..+++|
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~---r~lenLL~ayd~gD~E~~~kv 249 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS---RSLENLLTAYDEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH---HHHHHHHHHhccCCHHHHHHH
Confidence 666677777789999999998876654322 2211 233444555555555555554
No 258
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.041 Score=42.77 Aligned_cols=90 Identities=20% Similarity=0.149 Sum_probs=75.1
Q ss_pred CcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHH-H
Q 046569 84 GKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADI-K 160 (202)
Q Consensus 84 ~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~-~ 160 (202)
..+.+|.-+|++.-. +..+...+..+.|++.+++|++|...+..+|.-+++++.++.++-.+-..+|.-.++...+ .
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 457788888887766 7788899999999999999999999999999999999999999999999999887766554 4
Q ss_pred HHHhcCCCCHHHH
Q 046569 161 RALTIDPNNRDVK 173 (202)
Q Consensus 161 ~a~~l~p~~~~~~ 173 (202)
+....+|+.+-+.
T Consensus 267 QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 267 QLKLSHPEHPFVK 279 (299)
T ss_pred HHHhcCCcchHHH
Confidence 4455577776443
No 259
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.68 E-value=0.019 Score=49.18 Aligned_cols=117 Identities=11% Similarity=0.059 Sum_probs=90.3
Q ss_pred HHcCcHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHH
Q 046569 81 FRAGKYWRASKKYEKATN----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDE 156 (202)
Q Consensus 81 ~~~~~~~~A~~~y~~al~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~ 156 (202)
.-+|+..+|+.+|..|+. -....++..+|+++.++|...+|--.+..|+.-.|.....++.+|.++..++++...+
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~ 303 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSV 303 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhh
Confidence 457999999999999998 3444578899999999999999988888888888877778999999999999999999
Q ss_pred HHHHHHHhcCCCCH-HH--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 046569 157 ADIKRALTIDPNNR-DV--KLVYMELKENQREYAKYQAEIFGSM 197 (202)
Q Consensus 157 ~~~~~a~~l~p~~~-~~--~~~l~~~~~~~~~~~~~~~~~~~~~ 197 (202)
.+|..+.+.+|... .. +...-.|..++.+..+++.+.-+.|
T Consensus 304 ~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~ 347 (886)
T KOG4507|consen 304 LCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT 347 (886)
T ss_pred hhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999753 22 2233334444444444444444333
No 260
>PRK10941 hypothetical protein; Provisional
Probab=96.67 E-value=0.035 Score=43.59 Aligned_cols=78 Identities=13% Similarity=-0.101 Sum_probs=68.5
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
-..+.+.+.=..+.+.+++..|+..-+..+. |..+.-+.-+|.+|.++|.+..|..+++.-++..|+++.+-.-+.++
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3445566777888999999999999999999 99999999999999999999999999999999999998877665543
No 261
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.64 E-value=0.11 Score=38.41 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=77.8
Q ss_pred HcCcHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh-hCCCChHHHHHHHHHHhcCCCHHHHHHHH
Q 046569 82 RAGKYWRASKKYEKATN-GLRLSCYLNNAACKLKLEDYSEASSLCTKVLE-LEPLNVKALFRRSQAYLKTSELEKDEADI 159 (202)
Q Consensus 82 ~~~~~~~A~~~y~~al~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~g~~~~~~~~~~~A~~~~ 159 (202)
+.=+.+.++....+.++ .....-.+.+|.....+|++.+|..+|.+++. +-..++..+..++++.+..+++..|...+
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 33444444444444444 22334467889999999999999999999996 56678999999999999999999999999
Q ss_pred HHHHhcCCCC--HHHHHHHHHHHHHHHHH
Q 046569 160 KRALTIDPNN--RDVKLVYMELKENQREY 186 (202)
Q Consensus 160 ~~a~~l~p~~--~~~~~~l~~~~~~~~~~ 186 (202)
++..+..|.- +.-.-.++++.....++
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~ 176 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKY 176 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCc
Confidence 9999999864 44444555554444333
No 262
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.57 E-value=0.11 Score=41.11 Aligned_cols=104 Identities=19% Similarity=0.153 Sum_probs=81.0
Q ss_pred HHHHHhHHHHH-cCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh---HHHHHHHHH
Q 046569 72 RKKHDGNLLFR-AGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNV---KALFRRSQA 145 (202)
Q Consensus 72 ~~~~~g~~~~~-~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~g~~ 145 (202)
.+..-|..-+. .++.+.|...|+.+++ +....+|......+...++.+.|...|++++..-|... ..|-....-
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 34455655455 6777779999999999 88889999999999999999999999999998866544 567777777
Q ss_pred HhcCCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 046569 146 YLKTSELEKDEADIKRALTIDPNNRDVKLV 175 (202)
Q Consensus 146 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~ 175 (202)
=...|+.+......+++.++.|++......
T Consensus 117 E~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 117 ESKYGDLESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp HHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 778899999999999999999986655443
No 263
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.56 E-value=0.056 Score=35.05 Aligned_cols=77 Identities=17% Similarity=0.094 Sum_probs=51.2
Q ss_pred HHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-
Q 046569 89 ASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTI- 165 (202)
Q Consensus 89 A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l- 165 (202)
.+..+.+++. |.+..+.+.+|..+...|++++|++.+-.+++.++++ +-+.|...+-.++.+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~---------------~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY---------------EDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC---------------CCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------------cccHHHHHHHHHHHHc
Confidence 3455666776 9999999999999999999999999999999999877 222344444444444
Q ss_pred CCCCHHHHHHHHHHH
Q 046569 166 DPNNRDVKLVYMELK 180 (202)
Q Consensus 166 ~p~~~~~~~~l~~~~ 180 (202)
.|.+|.+.....++.
T Consensus 72 g~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 72 GPGDPLVSEYRRKLA 86 (90)
T ss_dssp -TT-HHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHH
Confidence 445565555544443
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.55 E-value=0.057 Score=45.91 Aligned_cols=95 Identities=9% Similarity=-0.044 Sum_probs=76.9
Q ss_pred cCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC----hHHHHHHHHHHhcCCCHHHHH
Q 046569 83 AGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN----VKALFRRSQAYLKTSELEKDE 156 (202)
Q Consensus 83 ~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~g~~~~~~~~~~~A~ 156 (202)
......|......... |+..-.+...|.++...|+.++|++.+++++...... .-.++.+|.++..+.+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3456777777777777 9999999999999999999999999999999654443 345788999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHH
Q 046569 157 ADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 157 ~~~~~a~~l~p~~~~~~~~l~ 177 (202)
.+|.+..+...-.+.....+.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHhccccHHHHHHHHH
Confidence 999999987655444444443
No 265
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.45 E-value=0.0081 Score=32.37 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhh
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCTKVLEL 131 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 131 (202)
.++.++|.+|..+|++++|+..+.+++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46777788888888888888877777765
No 266
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.31 E-value=0.053 Score=41.12 Aligned_cols=77 Identities=14% Similarity=0.051 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh-H
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNV-K 137 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~ 137 (202)
+..|..++..|+......-+..|+..|.++++ -....+.+-+|..+.++|++++|..++++++.....+. .
T Consensus 122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~ 201 (214)
T PF09986_consen 122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEP 201 (214)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcH
Confidence 34455555555555555667788888888887 34567889999999999999999999999998755433 3
Q ss_pred HHHHHH
Q 046569 138 ALFRRS 143 (202)
Q Consensus 138 ~~~~~g 143 (202)
.+..+|
T Consensus 202 ~l~~~A 207 (214)
T PF09986_consen 202 KLKDMA 207 (214)
T ss_pred HHHHHH
Confidence 444444
No 267
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.31 E-value=0.068 Score=37.62 Aligned_cols=63 Identities=14% Similarity=0.054 Sum_probs=52.9
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLE 130 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 130 (202)
.....+...+..+...|++..|+..+.+++. |.+..++..+-.+|...|+...|+..|.+...
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3445566777888899999999999999999 99999999999999999999999999988754
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.27 E-value=0.17 Score=39.88 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046569 85 KYWRASKKYEKATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 85 ~~~~A~~~y~~al~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
.|..=+....++++.....++..++..+...++++.++..++..++.+|-+...|..+-.+|...|+...|+..|++.-.
T Consensus 136 ~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 136 RFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 37777777777777999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cC
Q 046569 165 ID 166 (202)
Q Consensus 165 l~ 166 (202)
+.
T Consensus 216 ~~ 217 (280)
T COG3629 216 TL 217 (280)
T ss_pred Hh
Confidence 53
No 269
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.25 E-value=0.34 Score=40.92 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=88.2
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKT 149 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 149 (202)
.+..-|.---.++++..|.+.|.+||. ..+..+|...+.+-++.+...-|...+++|+.+-|.-...||.....-..+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 334455555567889999999999999 788899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCH
Q 046569 150 SELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l~p~~~ 170 (202)
|+...|.+.|++=++..|+..
T Consensus 155 gNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHH
Confidence 999999999999999999843
No 270
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.2 Score=42.24 Aligned_cols=129 Identities=13% Similarity=0.077 Sum_probs=86.4
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN-GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKT 149 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~ 149 (202)
..+.--+....++.+...|...+-.||- -....++...-..-.++++++.+...|.+-|+..|.+..+|...|..-..+
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L 484 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSL 484 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh
Confidence 3334445555567777788888888777 112233333344556788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhh
Q 046569 150 SELEKDEADIKRALTIDPNNRDVKLVYMELKENQ-REYAKYQAEIFGSMLS 199 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~f~ 199 (202)
|+.+.|...|+-|++...-+..-.-..+-+.=.+ ...-++.|+.|.++..
T Consensus 485 gdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 485 GDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 9999999999988877654432222333332222 3344566667766543
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.20 E-value=0.29 Score=35.23 Aligned_cols=111 Identities=11% Similarity=-0.055 Sum_probs=83.5
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKAT--NGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
...+.+........++.+++...+...- .|..+.+-..-|..+...|+|.+|+..++.+.+-.|..+-+--.++.|++
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 4556667777777888888877765432 39999999999999999999999999999999999999988888999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 046569 148 KTSELEKDEADIKRALTIDPNNRDVKLVYMELKEN 182 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 182 (202)
.+++.+ ...+-....-.+.|+.+......+..+
T Consensus 90 ~~~D~~--Wr~~A~evle~~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 90 ALGDPS--WRRYADEVLESGADPDARALVRALLAR 122 (160)
T ss_pred HcCChH--HHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 999874 333333222333466666666655443
No 272
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.18 E-value=0.028 Score=44.65 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
.+.|......+....+.|+.++|..+|.-|+. |.++.++...|...-.-++.-+|=.+|-+|+.++|.+.+++.+++.
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 44555556677778899999999999999999 9999999999999887788889999999999999999999999874
Q ss_pred H
Q 046569 145 A 145 (202)
Q Consensus 145 ~ 145 (202)
.
T Consensus 193 T 193 (472)
T KOG3824|consen 193 T 193 (472)
T ss_pred c
Confidence 3
No 273
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.18 E-value=0.05 Score=35.49 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=29.4
Q ss_pred HHcCcHHHHHHHHHHHHH--------h---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh
Q 046569 81 FRAGKYWRASKKYEKATN--------G---LRLSCYLNNAACKLKLEDYSEASSLCTKVLEL 131 (202)
Q Consensus 81 ~~~~~~~~A~~~y~~al~--------~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 131 (202)
.+.++|..|++.+.+..+ . ....+..++|.++...|++++|+..+++++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455666666666666555 1 22344555666666666666666666666654
No 274
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.98 E-value=0.0026 Score=50.82 Aligned_cols=58 Identities=24% Similarity=0.352 Sum_probs=54.4
Q ss_pred HHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH
Q 046569 113 LKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 113 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
+..|.+++|+++|..+++++|.....|-.++.++..++....|+.+|..++.++|+..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence 3567799999999999999999999999999999999999999999999999999864
No 275
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.86 E-value=0.022 Score=30.58 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 136 VKALFRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
..++.++|.+|...|++++|...+++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999998763
No 276
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.81 E-value=0.098 Score=42.95 Aligned_cols=73 Identities=22% Similarity=0.204 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh--------------C------------CCC---hHHHHHHHHHHhcC
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL--------------E------------PLN---VKALFRRSQAYLKT 149 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~~g~~~~~~ 149 (202)
|...+.+..++.++...|+++.|.+.+++||-. + +.| --+.++....+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 888888888888888888888888888777522 1 111 24566677888888
Q ss_pred CCHHHHHHHHHHHHhcCCC-CHH
Q 046569 150 SELEKDEADIKRALTIDPN-NRD 171 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l~p~-~~~ 171 (202)
|-+..|++.++-.+.+||. ||-
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcc
Confidence 8888888888888888888 653
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.76 E-value=0.29 Score=35.22 Aligned_cols=83 Identities=11% Similarity=0.014 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046569 102 LSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKE 181 (202)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 181 (202)
...+.....+-...++.+++...+.-.--+.|..+..-..-|..+...|++.+|+..|+.+..-.|..+.++-.++-+..
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34556666777788899999999999889999999999999999999999999999999999999999999999998876
Q ss_pred HHH
Q 046569 182 NQR 184 (202)
Q Consensus 182 ~~~ 184 (202)
.++
T Consensus 90 ~~~ 92 (160)
T PF09613_consen 90 ALG 92 (160)
T ss_pred HcC
Confidence 553
No 278
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.079 Score=42.68 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=66.7
Q ss_pred HHHHhHHHHHcCcHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 046569 73 KKHDGNLLFRAGKYWRASKKYEKATN------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAY 146 (202)
Q Consensus 73 ~~~~g~~~~~~~~~~~A~~~y~~al~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 146 (202)
++-.-..+|-.|+...-...+.+.+- |-..-+.--.+.++...|-|++|.+..+++++++|.+..+....+.++
T Consensus 140 ~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 140 VKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred hhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence 33444556777777777777777776 333444445677788999999999999999999998888877777777
Q ss_pred hcCCCHHHHHHHHHHH
Q 046569 147 LKTSELEKDEADIKRA 162 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a 162 (202)
...+++.++.+..++-
T Consensus 220 em~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 220 EMNGRHKEGKEFMYKT 235 (491)
T ss_pred HhcchhhhHHHHHHhc
Confidence 7777777776665543
No 279
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.42 E-value=0.79 Score=36.92 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=93.8
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh--C-C-----
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATNG------LRLSCYLNNAACKLKLEDYSEASSLCTKVLEL--E-P----- 133 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~-p----- 133 (202)
..+..+...+....+.|.++.|...+.++... ..+.+....+......|+..+|+..+...+.. . +
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 34556778888899999999999999998772 27888999999999999999999999888871 1 0
Q ss_pred --------------------------CChHHHHHHHHHHhcC------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046569 134 --------------------------LNVKALFRRSQAYLKT------SELEKDEADIKRALTIDPNNRDVKLVYMELKE 181 (202)
Q Consensus 134 --------------------------~~~~~~~~~g~~~~~~------~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 181 (202)
...++++.+|.-.... +..+++...|..+..++|+...+....+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0135677777777777 89999999999999999999888887777665
Q ss_pred HH
Q 046569 182 NQ 183 (202)
Q Consensus 182 ~~ 183 (202)
.+
T Consensus 304 ~~ 305 (352)
T PF02259_consen 304 KL 305 (352)
T ss_pred HH
Confidence 55
No 280
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.15 Score=44.29 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC------ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHH
Q 046569 100 LRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL------NVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVK 173 (202)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 173 (202)
....++.|.|.-++++++|..++++|...+..-|. ..+..-.++.||..+.+.|+|++.++.|-+.+|.++-.+
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 45567788899999999999999999999987654 366777889999999999999999999999999998777
Q ss_pred HHHHHH
Q 046569 174 LVYMEL 179 (202)
Q Consensus 174 ~~l~~~ 179 (202)
..+...
T Consensus 432 ~~~~~~ 437 (872)
T KOG4814|consen 432 LLMLQS 437 (872)
T ss_pred HHHHHH
Confidence 666543
No 281
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.37 E-value=0.26 Score=45.29 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=86.0
Q ss_pred HHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHh----c---CHHHHHHHHHHHhhhCCCChHHHH
Q 046569 73 KKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKL----E---DYSEASSLCTKVLELEPLNVKALF 140 (202)
Q Consensus 73 ~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~ 140 (202)
+....+.+...+.|+.|+..|.+.-. ..-.++.+..|.+.+.. + .+.+|+.-|++. .-.|.-|--|.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 556 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYL 556 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHH
Confidence 34455778888999999999999877 44556777778777654 2 355666655543 23455677788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 141 RRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 141 ~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
..|.+|..+|+|++-+.+|.-|++..|..|.+-.....+--++-..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHES 602 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998888887776666543
No 282
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.36 E-value=0.15 Score=45.74 Aligned_cols=97 Identities=22% Similarity=0.131 Sum_probs=78.6
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN---GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
+..-.|-.+++.|++++|..+.+ ++. +++...+.-+..||..++++++|..+|++++..+|. -+.++.+-.+|.+
T Consensus 45 a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR 122 (932)
T KOG2053|consen 45 AKVLKALSLFRLGKGDEALKLLE-ALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHHHHhcCchhHHHHHh-hhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH
Confidence 33457788999999999995444 444 667777888999999999999999999999999998 8888999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCH
Q 046569 149 TSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 149 ~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
.+.|.+=-+.--+..+..|+++
T Consensus 123 ~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 123 EKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHHHHHHHHHHHhCCccc
Confidence 9998875444444555777775
No 283
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.33 E-value=0.57 Score=44.39 Aligned_cols=96 Identities=13% Similarity=0.089 Sum_probs=58.5
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAY 146 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 146 (202)
..|...|..++++.+-+.|...+.+|+. ..+..+...-|..-++.|+.+.+...|...+...|.....|.-....-
T Consensus 1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 3444555556666666666666666666 235555666666666666666666666666666666666666666666
Q ss_pred hcCCCHHHHHHHHHHHHhcC
Q 046569 147 LKTSELEKDEADIKRALTID 166 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a~~l~ 166 (202)
...|+.+.+...|++++.+.
T Consensus 1645 ik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1645 IKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HccCCHHHHHHHHHHHHhcC
Confidence 66666666666666666654
No 284
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.30 E-value=0.068 Score=28.28 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHH--HHHHHhcCCCC
Q 046569 137 KALFRRSQAYLKTSELEKDEAD--IKRALTIDPNN 169 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~--~~~a~~l~p~~ 169 (202)
+.++.+|-.+..+|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3455666666666666666666 33555555543
No 285
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.27 E-value=0.063 Score=37.43 Aligned_cols=69 Identities=23% Similarity=0.230 Sum_probs=54.4
Q ss_pred HHhHHHHHc---CcHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHH
Q 046569 75 HDGNLLFRA---GKYWRASKKYEKATN----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRS 143 (202)
Q Consensus 75 ~~g~~~~~~---~~~~~A~~~y~~al~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g 143 (202)
+.+-.+.+. .+-.+.+.+++..++ ...-.+.+.++..+.++++|+.++.+++..++.+|+|..+.-..-
T Consensus 37 ~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 37 NLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred HHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 344444443 345678888888885 566778899999999999999999999999999999988765443
No 286
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.21 E-value=0.28 Score=31.92 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=46.5
Q ss_pred HHHhcCHHHHHHHHHHHhhhCCC---------ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 046569 112 KLKLEDYSEASSLCTKVLELEPL---------NVKALFRRSQAYLKTSELEKDEADIKRALTIDPN 168 (202)
Q Consensus 112 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 168 (202)
..+.++|..|++.+.+.+..... ...++.++|.++...|++++|+..++.++.+...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 35789999998888777755321 2567888999999999999999999999999643
No 287
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.18 E-value=0.35 Score=40.99 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=76.6
Q ss_pred HHHHhHHHHHcCcHHHHHHHHHHHHH--h--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh-CCCChHHHHHHHHHHh
Q 046569 73 KKHDGNLLFRAGKYWRASKKYEKATN--G--LRLSCYLNNAACKLKLEDYSEASSLCTKVLEL-EPLNVKALFRRSQAYL 147 (202)
Q Consensus 73 ~~~~g~~~~~~~~~~~A~~~y~~al~--~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~~ 147 (202)
-+..|+.+.+.|+.++|++.|...++ | +...+..|+..+++.++.|.++...+.+--.+ -|......|..+....
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 35688889999999999999999997 3 46779999999999999999988887775433 2455555555544332
Q ss_pred c-CCC---------------HHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 148 K-TSE---------------LEKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 148 ~-~~~---------------~~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
+ .++ ...|++.+.+|++.+|--+...-.+.
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K 387 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMK 387 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccC
Confidence 2 111 23478889999999988765544443
No 288
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.14 E-value=0.043 Score=29.44 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 137 KALFRRSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
.+|..+|.+-...++|++|+.+|++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777777777777777777765
No 289
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.13 E-value=0.66 Score=43.99 Aligned_cols=101 Identities=18% Similarity=0.187 Sum_probs=78.5
Q ss_pred hHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC--ChHHHHHHHHHHhcCCCH
Q 046569 77 GNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL--NVKALFRRSQAYLKTSEL 152 (202)
Q Consensus 77 g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~g~~~~~~~~~ 152 (202)
..+|-+..++++|.++|+.-++ .....+|...+..+++..+-+.|...+.+|+..-|. |.......|+.-++.|+-
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 4455566778888888888777 556778888888888888888888888888888886 777777788888888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 153 EKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 153 ~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
+++...|+-.+.-+|.-..++.-+.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHH
Confidence 8888888888888887555554443
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.99 E-value=0.75 Score=37.04 Aligned_cols=99 Identities=20% Similarity=0.126 Sum_probs=71.6
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH------------------------------------hHHHHHHHHHHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN------------------------------------GLRLSCYLNNAACKL 113 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~------------------------------------~~~~~~~~~~a~~~~ 113 (202)
.....+.+..+...|+..+|+......+. .....++..+|.-..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 34455677777788888888888766666 122344555555555
Q ss_pred Hh------cCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHhcCCC
Q 046569 114 KL------EDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSEL-----------------EKDEADIKRALTIDPN 168 (202)
Q Consensus 114 ~~------~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~-----------------~~A~~~~~~a~~l~p~ 168 (202)
.. +..++++..|..++.++|.+.++|+..|..+...=+. ..|+.+|-+++.+.|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 55 7778889999999999999999999998777655222 2378888888888777
No 291
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=1.9 Score=37.33 Aligned_cols=72 Identities=13% Similarity=0.156 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH----------------hHHHHH---HHHHHHHHHHhcCHHHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN----------------GLRLSC---YLNNAACKLKLEDYSEASSLCTK 127 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~----------------~~~~~~---~~~~a~~~~~~~~~~~A~~~~~~ 127 (202)
+..+..+...|+.-...+-.+.|+=.+.+|+. +.+-.. ++..-....+.|.|..|.++|.-
T Consensus 288 Lqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKl 367 (665)
T KOG2422|consen 288 LQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKL 367 (665)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 33444555555554455555555555566655 323222 22333344577999999999999
Q ss_pred HhhhCCC-ChHH
Q 046569 128 VLELEPL-NVKA 138 (202)
Q Consensus 128 al~~~p~-~~~~ 138 (202)
++.++|. +|-+
T Consensus 368 llsLdp~eDPl~ 379 (665)
T KOG2422|consen 368 LLSLDPSEDPLG 379 (665)
T ss_pred HhhcCCcCCchh
Confidence 9999987 5543
No 292
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.83 E-value=0.18 Score=39.43 Aligned_cols=62 Identities=15% Similarity=0.007 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 046569 121 ASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKEN 182 (202)
Q Consensus 121 A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~ 182 (202)
|..+|.+|+.+.|.+-..|..+|.+....|+.-+|+-+|-+++-.....+.+..++..+-+.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999887765567788887777665
No 293
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=94.78 E-value=0.27 Score=40.86 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=74.8
Q ss_pred hHHHHHcCcHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHH
Q 046569 77 GNLLFRAGKYWRASKKYEKATN----------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAY 146 (202)
Q Consensus 77 g~~~~~~~~~~~A~~~y~~al~----------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~ 146 (202)
...+...|+|..|++.....=- +-....++..|-+|+-+++|.+|+..++.++..-......+..+..-+
T Consensus 129 lRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~ 208 (404)
T PF10255_consen 129 LRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQY 208 (404)
T ss_pred HHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchh
Confidence 3455567888888877544311 667778999999999999999999999988753221111111111111
Q ss_pred hc-CCCHHHHHHHHHHHHhcCCC--CHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 046569 147 LK-TSELEKDEADIKRALTIDPN--NRDVKL-VYMELKENQREYAKYQAEIFGSMLSK 200 (202)
Q Consensus 147 ~~-~~~~~~A~~~~~~a~~l~p~--~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~f~~ 200 (202)
-. ....++....+--++.+.|. +..+.. ...+....+.+-+..+-..|..+|..
T Consensus 209 d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~ 266 (404)
T PF10255_consen 209 DQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSF 266 (404)
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 11 23445555666666677774 333333 33334455555566677788888864
No 294
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.76 E-value=0.075 Score=40.52 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=52.9
Q ss_pred HHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC
Q 046569 79 LLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN 135 (202)
Q Consensus 79 ~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 135 (202)
...+.++...|.+.|.+++. |.-..-|..+|....+.|+++.|...|.+.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45678999999999999999 8889999999999999999999999999999999865
No 295
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.71 E-value=1.8 Score=35.77 Aligned_cols=105 Identities=15% Similarity=0.058 Sum_probs=74.8
Q ss_pred HHHhHHHHH---cCcHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHhhhCCCC---
Q 046569 74 KHDGNLLFR---AGKYWRASKKYEKATN---GLRLSCYLNNAACKLKL---------EDYSEASSLCTKVLELEPLN--- 135 (202)
Q Consensus 74 ~~~g~~~~~---~~~~~~A~~~y~~al~---~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~--- 135 (202)
...|..+-+ .|+.++|+..+..++. +..++.+.-.|.+|-.+ ...++|+.+|.++.+++|+.
T Consensus 183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G 262 (374)
T PF13281_consen 183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG 262 (374)
T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch
Confidence 355555666 7999999999999776 67777788888776433 24678999999988887532
Q ss_pred ------------------------------------------hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHH
Q 046569 136 ------------------------------------------VKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVK 173 (202)
Q Consensus 136 ------------------------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~ 173 (202)
-+.+-.++.+..-.|++++|...+++++.+.|..-...
T Consensus 263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 12223345666667889999999999999988876544
Q ss_pred HHHHH
Q 046569 174 LVYME 178 (202)
Q Consensus 174 ~~l~~ 178 (202)
..+..
T Consensus 343 St~~n 347 (374)
T PF13281_consen 343 STLEN 347 (374)
T ss_pred HHHHH
Confidence 44333
No 296
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.53 E-value=0.11 Score=41.36 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHH-HHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFR-RSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
+..+..|...+....+.|-|.+--..|..++..+|.++..|.. -+.-+...++++.+...|.+++.++|++|.++..+-
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 7778888888888888889999999999999999999998887 566788889999999999999999999987776654
Q ss_pred H
Q 046569 178 E 178 (202)
Q Consensus 178 ~ 178 (202)
+
T Consensus 184 r 184 (435)
T COG5191 184 R 184 (435)
T ss_pred H
Confidence 4
No 297
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=94.48 E-value=0.51 Score=28.71 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
+..+..+...|...-+.|+|.+|+..|.+|++
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34577888999999999999999999999998
No 298
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.46 E-value=0.079 Score=28.39 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhC
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCTKVLELE 132 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 132 (202)
.+|..+|.+-+..++|+.|+.+|.+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888889999999998888763
No 299
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.42 E-value=0.066 Score=25.91 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Q 046569 137 KALFRRSQAYLKTSELEKDEADIK 160 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~~~ 160 (202)
.+.+.+|.++...|+.++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666665543
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.42 E-value=1.3 Score=36.52 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=62.0
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-------------------------------hHHHHHHHHHHHHHHHhcCH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-------------------------------GLRLSCYLNNAACKLKLEDY 118 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-------------------------------~~~~~~~~~~a~~~~~~~~~ 118 (202)
+..+.+.+.++..+|++..|-...++||- .....+.........+.|.|
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 44566788888888999988888888875 23344555666777889999
Q ss_pred HHHHHHHHHHhhhCCC-ChHH-HHHHHHHHhcCCCHHHHHHHHH
Q 046569 119 SEASSLCTKVLELEPL-NVKA-LFRRSQAYLKTSELEKDEADIK 160 (202)
Q Consensus 119 ~~A~~~~~~al~~~p~-~~~~-~~~~g~~~~~~~~~~~A~~~~~ 160 (202)
..|+++|.-.+.+||. +|-+ .+.+-......++|+--+..++
T Consensus 120 rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred HHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999997 5533 2223333334444443333333
No 301
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=94.33 E-value=0.043 Score=39.47 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=30.2
Q ss_pred CcchHHHHHHhccccccEEEEEecccc-cccCC
Q 046569 1 NVNEGLERAIMTMKKEEQATVTISAEY-LCGHE 32 (202)
Q Consensus 1 ~v~~~~~~~~~~m~~ge~~~~~~~~~~-~~~~~ 32 (202)
+|++||+.+|..|+.|++..+.++|.. ||...
T Consensus 43 ~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 43 SLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred CccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 479999999999999999999999999 99887
No 302
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.31 E-value=1.5 Score=38.53 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=61.2
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--------------------GLRLSCYLNNAACKLKLEDYSEASSLCTKVL 129 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 129 (202)
+..+-+=|..-....+++.|+++..+|.. -....+|...+..--..|-++.....|++++
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44444555555666777777777777765 1233445555555556666666677777777
Q ss_pred hhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 046569 130 ELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDP 167 (202)
Q Consensus 130 ~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 167 (202)
.+.--.|..-.+.|..+....-+++|...|++.+.+.|
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 76666666666666666666666666666666666643
No 303
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.03 E-value=1.3 Score=30.38 Aligned_cols=63 Identities=16% Similarity=0.064 Sum_probs=51.5
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN-------------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL 131 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~-------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 131 (202)
.+..+...+..+...|+|++++..-.++|. ..=+.+.++++..+-.+|..++|+..|+.+.++
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455666777888899999999999999987 344567789999999999999999999998875
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.83 E-value=1.9 Score=31.62 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC---ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL---NVKALFRRSQAYLKTSELEKDEADIKRALTIDP 167 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p 167 (202)
.....++..+|..|.+.|+++.|++.|.++...... ....++++..+....+++......+.++-.+-.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 666788999999999999999999999998887653 267788899999999999999999999988843
No 305
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.67 E-value=0.33 Score=26.92 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHh
Q 046569 140 FRRSQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 140 ~~~g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
+.+|.+|..+|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888774
No 306
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.66 E-value=0.47 Score=42.78 Aligned_cols=96 Identities=17% Similarity=0.053 Sum_probs=72.3
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH----------------------hHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN----------------------GLRLSCYLNNAACKLKLEDYSEASSLC 125 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~----------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~ 125 (202)
..-..+++.+..+-.+++...|+++|+++=. .....+|..-|...-..|+.+.|+.+|
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 3444566777777777888888888887633 344567777788888889999999888
Q ss_pred HHHhhh---------------------CCCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 046569 126 TKVLEL---------------------EPLNVKALFRRSQAYLKTSELEKDEADIKRAL 163 (202)
Q Consensus 126 ~~al~~---------------------~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~ 163 (202)
..|-.. ...+-.+.|.+|.-|...|++.+|+..|.+|-
T Consensus 936 ~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 936 SSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 876422 24567788899999999999999998877653
No 307
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.64 E-value=4.1 Score=34.78 Aligned_cols=95 Identities=22% Similarity=0.270 Sum_probs=72.8
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh-hhCCCC------
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVL-ELEPLN------ 135 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~------ 135 (202)
..+.-..-.|-....-+.|+.|...|..|.+ .....+..|+|.+|++.++-+. +.+++ .+.|.|
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ss 440 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSS 440 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchH
Confidence 3445556677777777899999999999998 5556677899999999776554 33333 345542
Q ss_pred ----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 136 ----VKALFRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 136 ----~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
..++|..|...+.++++.+|...+.+.++..
T Consensus 441 q~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3567888999999999999999999999886
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.62 E-value=2.1 Score=31.48 Aligned_cols=105 Identities=15% Similarity=0.083 Sum_probs=70.4
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH----h--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHh-hhCCCChHHHHHHHH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN----G--LRLSCYLNNAACKLKLEDYSEASSLCTKVL-ELEPLNVKALFRRSQ 144 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~----~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~g~ 144 (202)
.....|.....+|+...|+..|..+-. | ..-.+...-+..+.-.|.|+....-.+..- .-+|-...+--.+|.
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALgl 175 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGL 175 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhH
Confidence 445667777788888888888888766 2 223345555566667777777555443322 334555677777999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 145 AYLKTSELEKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 145 ~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
+-++-|++.+|...|..+.. |...|..-...+
T Consensus 176 Aa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred HHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 99999999999999998877 444443333333
No 309
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=2.3 Score=36.85 Aligned_cols=102 Identities=17% Similarity=-0.072 Sum_probs=79.4
Q ss_pred HHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHH-HhhhCCCChHHHHHH------HHHHhc
Q 046569 78 NLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTK-VLELEPLNVKALFRR------SQAYLK 148 (202)
Q Consensus 78 ~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~------g~~~~~ 148 (202)
......+....+.-....++. +.+..++.+++.+....|....++..+.. +....|++......+ |..+..
T Consensus 75 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (620)
T COG3914 75 ILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKL 154 (620)
T ss_pred hhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHH
Confidence 333444556666666666666 88899999999998888777766665554 888899887776666 888999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 046569 149 TSELEKDEADIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 149 ~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
+++-.++...++++.++.|.++.+...+.-.
T Consensus 155 l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 155 LGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 9999999999999999999998777776665
No 310
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.37 E-value=0.38 Score=25.36 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH--HHhhhCCC
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCT--KVLELEPL 134 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~--~al~~~p~ 134 (202)
+.++.+|..+...|++++|+..++ -+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 446667777778888888888844 66666664
No 311
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.35 E-value=0.92 Score=37.53 Aligned_cols=92 Identities=14% Similarity=0.097 Sum_probs=75.5
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC--------CCChHH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN-----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE--------PLNVKA 138 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~ 138 (202)
.+...|..|...|+.+.|++.|.++=. ......+.|.-.+-..+|+|.....+.++|...- .-.++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 455788999999999999999999655 6778888999999999999998888888887651 124567
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 046569 139 LFRRSQAYLKTSELEKDEADIKRAL 163 (202)
Q Consensus 139 ~~~~g~~~~~~~~~~~A~~~~~~a~ 163 (202)
.+.-|.+...+++|..|..+|-.+.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7778899999999999999886654
No 312
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=93.34 E-value=3.1 Score=34.93 Aligned_cols=112 Identities=15% Similarity=0.206 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH----------hHHHHHHH--HHHHHH-----HHh--cCHH-HHHHHH
Q 046569 66 KIEACERKKHDGNLLFRAGKYWRASKKYEKATN----------GLRLSCYL--NNAACK-----LKL--EDYS-EASSLC 125 (202)
Q Consensus 66 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~----------~~~~~~~~--~~a~~~-----~~~--~~~~-~A~~~~ 125 (202)
.+.......+.|..++..|+|.+|+..|...|. .....+.- .++.=| +.+ .... ...+.-
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 444455566789999999999999999999998 11111111 111111 111 1110 111112
Q ss_pred HHHh---------hhCCCChHHHHHHH-HHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 126 TKVL---------ELEPLNVKALFRRS-QAYLKTSELEKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 126 ~~al---------~~~p~~~~~~~~~g-~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
.+.+ ++.|.|...-++.| ...++.++|.-|...-++.+++.|....+.+...
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArK 341 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARK 341 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2222 33455544444555 4567889999999999999999998866554433
No 313
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.31 E-value=0.74 Score=38.67 Aligned_cols=58 Identities=19% Similarity=0.219 Sum_probs=50.5
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKV 128 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 128 (202)
...+.+.|.-+|.+|+|.++...-.-..+ | .+.+|..+|.|.+..++|.+|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 55677888999999999999988766666 6 8999999999999999999999998654
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.21 E-value=2.2 Score=30.39 Aligned_cols=83 Identities=8% Similarity=-0.055 Sum_probs=63.5
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKA--TNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~a--l~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
..+.+........++..++....... +.|..+.+-..-|..+...|+|.+|+..++.+.+-.+..+-+.-.++.|++.
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34444444555567777766655432 2288888888889999999999999999999998888888888888999999
Q ss_pred CCCHH
Q 046569 149 TSELE 153 (202)
Q Consensus 149 ~~~~~ 153 (202)
+||.+
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 99864
No 315
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.17 E-value=3.4 Score=32.50 Aligned_cols=102 Identities=22% Similarity=0.057 Sum_probs=71.0
Q ss_pred HHHHHhHHHHH----cCcHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHhc-------CHHHHHHHHHHHhhhCCCChH
Q 046569 72 RKKHDGNLLFR----AGKYWRASKKYEKATNGLRLSC---YLNNAACKLKLE-------DYSEASSLCTKVLELEPLNVK 137 (202)
Q Consensus 72 ~~~~~g~~~~~----~~~~~~A~~~y~~al~~~~~~~---~~~~a~~~~~~~-------~~~~A~~~~~~al~~~p~~~~ 137 (202)
.+...|..+.. ..++.+|..+|.+|.+..+..+ ..+++.+|..-. +...|+..+.++-... ++.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~ 188 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD 188 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH
Confidence 44456666655 3488889999999888434443 778888776531 2236788888777766 788
Q ss_pred HHHHHHHHHhc----CCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 138 ALFRRSQAYLK----TSELEKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 138 ~~~~~g~~~~~----~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
+.+++|.+|.. ..++.+|...|.++-+... ......+.
T Consensus 189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 88888877755 3478889999999888876 44444444
No 316
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.12 E-value=1.3 Score=30.40 Aligned_cols=99 Identities=14% Similarity=0.078 Sum_probs=67.2
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH-----------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHH----hh
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN-----------------GLRLSCYLNNAACKLKLEDYSEASSLCTKV----LE 130 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~-----------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----l~ 130 (202)
.+...|+..++.+++-.++-.|++|+. ........|+|..|..+|+.+-.+++++-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999998 233445679999999999999998887654 45
Q ss_pred hCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 046569 131 LEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVY 176 (202)
Q Consensus 131 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 176 (202)
+-|+-+..-+. .-...+|--..|+-+| ++..|+ |.+-+..
T Consensus 83 LiPQCp~~~C~--afi~sLGCCk~ALl~F---~KRHPN-P~iA~~v 122 (140)
T PF10952_consen 83 LIPQCPNTECE--AFIDSLGCCKKALLDF---MKRHPN-PEIARLV 122 (140)
T ss_pred hccCCCCcchH--HHHHhhhccHHHHHHH---HHhCCC-HHHHHHH
Confidence 55654332211 0122455666676666 456665 4444333
No 317
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.11 E-value=2 Score=35.57 Aligned_cols=89 Identities=20% Similarity=0.147 Sum_probs=70.5
Q ss_pred HHHHcCcHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 79 LLFRAGKYWRASKKYEKATN----------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 79 ~~~~~~~~~~A~~~y~~al~----------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
.....|+|+.|+++.+.... .....++...+.... .-+...|.++...++++.|+...+-..-+.+++.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 34578999999999887766 233333344443332 2367889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCC
Q 046569 149 TSELEKDEADIKRALTIDPN 168 (202)
Q Consensus 149 ~~~~~~A~~~~~~a~~l~p~ 168 (202)
.|+..++-..++.+-+.+|-
T Consensus 276 d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred ccchhhhhhHHHHHHhcCCC
Confidence 99999999999999999875
No 318
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=3.5 Score=32.39 Aligned_cols=106 Identities=14% Similarity=0.041 Sum_probs=87.2
Q ss_pred HHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHH-HH
Q 046569 80 LFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLE-DYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELE-KD 155 (202)
Q Consensus 80 ~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~-~A 155 (202)
.++...-..|+.+-..+|. |.+-.+|..+-.|...++ +..+-+++++.+++-+|.+-..|..+-.+....|+.. +-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 3445666889999999998 888888888888877664 6678899999999999999999999999999999888 88
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 046569 156 EADIKRALTIDPNNRDVKLVYMELKENQRE 185 (202)
Q Consensus 156 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 185 (202)
++..+.++..|..|-.+.+...=+-+..+-
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~ 162 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKD 162 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence 999999999999987777766655554443
No 319
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.10 E-value=1.1 Score=34.67 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCC--CC----hHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEP--LN----VKALFRRSQAYLKTSELEKDEADIKRA 162 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~~g~~~~~~~~~~~A~~~~~~a 162 (202)
.....+...+|.-|+..|+|++|+..++.+...-. .+ ......+..|....|+.+..+...-+.
T Consensus 175 R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 175 RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 77777778888888888888888888888865422 12 445666778888888888777665443
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.07 E-value=2.7 Score=36.69 Aligned_cols=92 Identities=21% Similarity=0.118 Sum_probs=74.8
Q ss_pred HHHHhHHHHHcC-----cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 73 KKHDGNLLFRAG-----KYWRASKKYEKATNGLRLSCYLNNAACKLKLE---DYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 73 ~~~~g~~~~~~~-----~~~~A~~~y~~al~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
....|..+.+.. ++..|+.+|.++-+...+.+.+.+|.+|..-. +...|..+|..|-... ++.+.+++|.
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~ 368 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLAL 368 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHH
Confidence 345677777642 78899999999999888899999999997654 5678999998877654 6888999998
Q ss_pred HHhcC----CCHHHHHHHHHHHHhcC
Q 046569 145 AYLKT----SELEKDEADIKRALTID 166 (202)
Q Consensus 145 ~~~~~----~~~~~A~~~~~~a~~l~ 166 (202)
+|..- -+...|..++.++.+..
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 88754 57889999999999998
No 321
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.06 E-value=3.9 Score=33.02 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=66.5
Q ss_pred HHHHHHH--hHHHHHHHHHHHHHHHhcC------------HHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHH
Q 046569 92 KYEKATN--GLRLSCYLNNAACKLKLED------------YSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEA 157 (202)
Q Consensus 92 ~y~~al~--~~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 157 (202)
.|++.+. |.+..+|..+....-.+-. .+..+..+++||+.+|++...+..+=.+.....+-++...
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555555 7777777777665544422 4566788899999999888888888888888888888889
Q ss_pred HHHHHHhcCCCCHHHHHHHHHH
Q 046569 158 DIKRALTIDPNNRDVKLVYMEL 179 (202)
Q Consensus 158 ~~~~a~~l~p~~~~~~~~l~~~ 179 (202)
-+++++..+|++..+...+-..
T Consensus 87 ~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 87 KWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHCCCChHHHHHHHHH
Confidence 9999999999887776665443
No 322
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=93.03 E-value=1.1 Score=28.00 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=26.7
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
..+..+...+..+-+.|++.+|+.+|+++|+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3467788889999999999999999999887
No 323
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=93.01 E-value=0.93 Score=28.41 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=26.7
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
.+..+...|...-+.|+|.+|+.+|.++|+
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 466778889999999999999999999988
No 324
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.96 E-value=6.2 Score=34.92 Aligned_cols=116 Identities=16% Similarity=0.127 Sum_probs=93.9
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC-----------
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL----------- 134 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------- 134 (202)
.+...|..|-..|+.+.|...|++|.. .+...+|.+-|..-++.++++.|+...++|...-..
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 455777888888999999999999998 677888999998888889999999999888765321
Q ss_pred -------ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 046569 135 -------NVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 135 -------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 187 (202)
+.+.|...+......|=++.....|+++++|--..|.+-.+++...+.-+-..
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfe 528 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFE 528 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHH
Confidence 34667778888888899999999999999998888888888887765544433
No 325
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.78 E-value=0.81 Score=32.31 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 135 NVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
-.......+......|++.-|......++..+|+|.+++..++.+.+.+...
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3456677888888999999999999999999999999999999988887554
No 326
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=5.2 Score=33.27 Aligned_cols=112 Identities=13% Similarity=-0.022 Sum_probs=81.6
Q ss_pred HHhHHHHHcCcHHHH-HHHHHHHHH--hHHHHHHHHHHHHHHHhc------------CHHHHHHHHHHHhhhCCCChHHH
Q 046569 75 HDGNLLFRAGKYWRA-SKKYEKATN--GLRLSCYLNNAACKLKLE------------DYSEASSLCTKVLELEPLNVKAL 139 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A-~~~y~~al~--~~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~ 139 (202)
..-....+.|.|+.- ++.=...++ |....+|+-+-.++.... .+++-+.....+++.+|+.-.+|
T Consensus 33 s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW 112 (421)
T KOG0529|consen 33 SIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAW 112 (421)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHH
Confidence 333444455666544 444444444 666667665555543322 45667788888999999999999
Q ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 140 FRRSQAYLKTSE--LEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 140 ~~~g~~~~~~~~--~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
+.+..++.+.+. +..-++.++++++.||.|-.+.....-+....+..
T Consensus 113 ~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 113 HHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 999999987764 68899999999999999998888888887777766
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.64 E-value=0.18 Score=24.34 Aligned_cols=24 Identities=29% Similarity=0.155 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCT 126 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~ 126 (202)
.+..++|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888877664
No 328
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=92.63 E-value=3.2 Score=31.86 Aligned_cols=105 Identities=16% Similarity=0.081 Sum_probs=62.0
Q ss_pred HHcCcHHHHHHHHHHHHH-----h---------HHHHHHHHHHHHHHHhcC-HHHH-HHHHHHHhhh--CCCChH--HHH
Q 046569 81 FRAGKYWRASKKYEKATN-----G---------LRLSCYLNNAACKLKLED-YSEA-SSLCTKVLEL--EPLNVK--ALF 140 (202)
Q Consensus 81 ~~~~~~~~A~~~y~~al~-----~---------~~~~~~~~~a~~~~~~~~-~~~A-~~~~~~al~~--~p~~~~--~~~ 140 (202)
|..|+|+.|+.+..-||+ | ...+-...-+......|. ++-. ...+..+..- -|+-+. -|-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~K 173 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLYK 173 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 456899999999999999 2 111222233333334443 1111 1122222211 133333 344
Q ss_pred HHHHHHh---------cCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 046569 141 RRSQAYL---------KTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREY 186 (202)
Q Consensus 141 ~~g~~~~---------~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 186 (202)
..|..+. ..++...|+.++++|+.++|. .-++..+.++.++++..
T Consensus 174 ~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 174 AAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence 4566663 556888999999999999976 55677778888877643
No 329
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.50 E-value=0.89 Score=36.09 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 046569 102 LSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRA 162 (202)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 162 (202)
...+...+..|...|.+.+|+..+++++.++|-+...+..+-.++..+|+--.|...|++.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3344555666777777777777777777777777777777777777777766666666543
No 330
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.32 E-value=5.8 Score=33.03 Aligned_cols=91 Identities=13% Similarity=0.013 Sum_probs=71.6
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH-hHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCH
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN-GLRLS-CYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSEL 152 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~-~~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 152 (202)
-.+....-.|+|+.|.+.|+.-+. |..-. -+..+=.--.++|..+.|+.+...+-+..|.-+.++...=......|++
T Consensus 125 LeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 125 LEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDW 204 (531)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCCh
Confidence 455566678999999999999988 33222 1223333344789999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHhc
Q 046569 153 EKDEADIKRALTI 165 (202)
Q Consensus 153 ~~A~~~~~~a~~l 165 (202)
+.|+...+.....
T Consensus 205 d~AlkLvd~~~~~ 217 (531)
T COG3898 205 DGALKLVDAQRAA 217 (531)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988765543
No 331
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=92.25 E-value=1.7 Score=27.00 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
+..+..+...|...-..|+|++|+.+|..|++
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677888899999999999999999999988
No 332
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.22 E-value=1.4 Score=32.80 Aligned_cols=66 Identities=15% Similarity=-0.004 Sum_probs=54.2
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCCh
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN-GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNV 136 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 136 (202)
..-.+.|...+..|.+++|+..+..... ...+..---+|.++...|+-.+|...|.++++.+++.+
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 3445678888999999999998887666 44555677899999999999999999999999986543
No 333
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.20 E-value=7.8 Score=34.25 Aligned_cols=114 Identities=15% Similarity=0.075 Sum_probs=83.0
Q ss_pred HHHHHHHHhHHHH-HcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC----C
Q 046569 69 ACERKKHDGNLLF-RAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL----N 135 (202)
Q Consensus 69 ~a~~~~~~g~~~~-~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~ 135 (202)
.+....+.|..++ ...+++.|....++++. .....+.+-++.++.+.+... |+..+++.++...+ .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 3777888898887 67999999999999987 334555667789998888887 99999999986544 2
Q ss_pred hHHHHHHH--HHHhcCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHH
Q 046569 136 VKALFRRS--QAYLKTSELEKDEADIKRALTID--PNNRDVKLVYMELKENQ 183 (202)
Q Consensus 136 ~~~~~~~g--~~~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~~~~~~~ 183 (202)
+.-.|++- ..+...+++..|++.++....+. +.++.+.....-+...+
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 33333333 22222379999999999999987 57776666554444333
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.12 E-value=1.3 Score=33.17 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC----ChHHHHHHHHHHhcCCCHHHH
Q 046569 102 LSCYLNNAACKLKLEDYSEASSLCTKVLELEPL----NVKALFRRSQAYLKTSELEKD 155 (202)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~g~~~~~~~~~~~A 155 (202)
+.+.+.+|..|. ..+.++|+..+.+++++.+. ++..+..++.++..+++++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444443 33445555555555544321 244455555555555555444
No 335
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.98 E-value=0.31 Score=40.46 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh--------hCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 105 YLNNAACKLKLEDYSEASSLCTKVLE--------LEPLNVKALFRRSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 105 ~~~~a~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
...+..++.-+|+|..|++..+.+-- .-+-+...+|..|.+|..+++|.+|+..|..++..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678889999999998765421 12356888999999999999999999999887654
No 336
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.92 E-value=0.49 Score=29.60 Aligned_cols=30 Identities=17% Similarity=0.094 Sum_probs=26.9
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
.+..+...|...-+.|+|.+|+.+|..+|+
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 467788899999999999999999999987
No 337
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.88 E-value=1.8 Score=33.97 Aligned_cols=71 Identities=17% Similarity=-0.007 Sum_probs=61.4
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHH
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQA 145 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~ 145 (202)
..=..+...+++..|...-.+.+. |..+.-+.-+|.+|.++|.+..|+.+++..++..|+.+.+-+-++..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344556678899999999999888 88898899999999999999999999999999999998887766543
No 338
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.60 E-value=3.5 Score=31.93 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=44.8
Q ss_pred HHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 046569 74 KHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVL 129 (202)
Q Consensus 74 ~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 129 (202)
.+.|..++..|+|++|+..|+.+.. .....+...+..|+..+|+.+..+..+-+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3778888888888888888888876 5667778888888888888888887775544
No 339
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=91.52 E-value=1.5 Score=27.25 Aligned_cols=32 Identities=16% Similarity=-0.055 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
+..+..+..+|...-..|+|++|+.+|..+|+
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34677788889999999999999999999998
No 340
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=91.45 E-value=2.2 Score=26.35 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=26.8
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
..+..+...|...-..|+|++|+.+|..|++
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777888888899999999999999988
No 341
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=4.3 Score=32.29 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046569 86 YWRASKKYEKATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKR 161 (202)
Q Consensus 86 ~~~A~~~y~~al~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 161 (202)
.+.++.-+-.-+-+.....-..-+.-....|++.+|...+..++...|.+..+...++.||...|+.+.|...+..
T Consensus 118 Pesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 118 PESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred cHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 3444444433322333344455566677899999999999999999999999999999999999999888766643
No 342
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.33 E-value=7.4 Score=32.20 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh----CCCChHHHHHHHHHHhc---CCCHHHHHHHHHH-HHhcCCCCHH
Q 046569 100 LRLSCYLNNAACKLKLEDYSEASSLCTKVLEL----EPLNVKALFRRSQAYLK---TSELEKDEADIKR-ALTIDPNNRD 171 (202)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~g~~~~~---~~~~~~A~~~~~~-a~~l~p~~~~ 171 (202)
..+++..++=.+|...++|+.=+...+..-.+ -++.+..-+..|.++.+ .|+.++|+..+.. .....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 44556667777888889998877777776666 34577888889999999 9999999999999 4455677899
Q ss_pred HHHHHHHHHHHH
Q 046569 172 VKLVYMELKENQ 183 (202)
Q Consensus 172 ~~~~l~~~~~~~ 183 (202)
..-....+.+.+
T Consensus 219 ~~gL~GRIyKD~ 230 (374)
T PF13281_consen 219 TLGLLGRIYKDL 230 (374)
T ss_pred HHHHHHHHHHHH
Confidence 999998887776
No 343
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.22 E-value=4.9 Score=31.61 Aligned_cols=81 Identities=16% Similarity=0.014 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCC-----------
Q 046569 86 YWRASKKYEKATNGLRLSCYLNNAACKLK----LEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTS----------- 150 (202)
Q Consensus 86 ~~~A~~~y~~al~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~----------- 150 (202)
...|+..|.++-....+.+..++|.+|.. ..++.+|..+|.++-+... ..+.+.++ +++..|
T Consensus 171 ~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~ 247 (292)
T COG0790 171 DKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTA 247 (292)
T ss_pred HHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccc
Confidence 34788899998887788999999988864 3489999999999999988 88999999 777666
Q ss_pred ----CHHHHHHHHHHHHhcCCCC
Q 046569 151 ----ELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 151 ----~~~~A~~~~~~a~~l~p~~ 169 (202)
+...|...+..+-...+..
T Consensus 248 ~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 248 AKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred ccCCCHHHHHHHHHHHHHcCChh
Confidence 7888888888888876654
No 344
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=91.21 E-value=2.4 Score=26.28 Aligned_cols=32 Identities=22% Similarity=0.196 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
...+..+...|...-..|++++|+..|.+|++
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45577778888888899999999999999988
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.13 E-value=4.8 Score=34.42 Aligned_cols=120 Identities=12% Similarity=0.019 Sum_probs=82.4
Q ss_pred HHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHH
Q 046569 78 NLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKD 155 (202)
Q Consensus 78 ~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A 155 (202)
......|+...|-.....++. |..+......+.+...+|.|+.+..+++.+-..-....++.-.+-..+..+++++.|
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 334556777777777777777 777777788888999999999999988877766555566666666778888899988
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046569 156 EADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSML 198 (202)
Q Consensus 156 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 198 (202)
...-...+.-+-+++++..--+.-...++=.. +.--.||++|
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d-~~~~~wk~~~ 418 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFD-KSYHYWKRVL 418 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHH-HHHHHHHHHh
Confidence 88887777777677666544433333333332 2223555554
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.11 E-value=2.5 Score=38.48 Aligned_cols=67 Identities=15% Similarity=-0.042 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHh----------hhCC----------CChHHHHHHHHHHhcCCCHHHHHHHH
Q 046569 100 LRLSCYLNNAACKLKLEDYSEASSLCTKVL----------ELEP----------LNVKALFRRSQAYLKTSELEKDEADI 159 (202)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----------~~~p----------~~~~~~~~~g~~~~~~~~~~~A~~~~ 159 (202)
..-..|++.|.-+-..++.+.|+++|+++- .-+| .+++.|-..|+-+...|+.+.|+..|
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y 935 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFY 935 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHH
Confidence 344567888888888899999999998852 1123 34567777899999999999999999
Q ss_pred HHHHhcC
Q 046569 160 KRALTID 166 (202)
Q Consensus 160 ~~a~~l~ 166 (202)
..|-+..
T Consensus 936 ~~A~D~f 942 (1416)
T KOG3617|consen 936 SSAKDYF 942 (1416)
T ss_pred HHhhhhh
Confidence 8886543
No 347
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.02 E-value=6.5 Score=30.98 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=70.9
Q ss_pred HHcCcHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhhh----CC---CC-------
Q 046569 81 FRAGKYWRASKKYEKATN----------GLRLSCYLNNAACKLKLE-DYSEASSLCTKVLEL----EP---LN------- 135 (202)
Q Consensus 81 ~~~~~~~~A~~~y~~al~----------~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~p---~~------- 135 (202)
.+.|+++.|...|.++=. ......++|.|......+ +++.|..+++++.++ .+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467888999999888755 567788999999999999 999999999999887 21 11
Q ss_pred hHHHHHHHHHHhcCCCHHHHHH---HHHHHHhcCCCCHHHHHHH
Q 046569 136 VKALFRRSQAYLKTSELEKDEA---DIKRALTIDPNNRDVKLVY 176 (202)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~~A~~---~~~~a~~l~p~~~~~~~~l 176 (202)
...+..++.+|...+.++.... .++.+-.-.|+.+......
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~ 127 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLK 127 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3456678999999988765444 4444444457666666333
No 348
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.49 E-value=1.8 Score=37.19 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC---CCHHHHHHHHHHHHhcCCCCHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKT---SELEKDEADIKRALTIDPNNRDVKLV 175 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~---~~~~~A~~~~~~a~~l~p~~~~~~~~ 175 (202)
+....-+..-|+--+....+..|+.+|.+++..-|.....+.+++.++... |+.-.|+.++..|+.++|....+...
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 444555555555555666788999999999999999999999999888765 45667999999999999999999988
Q ss_pred HHHHHHHHHHHHHH
Q 046569 176 YMELKENQREYAKY 189 (202)
Q Consensus 176 l~~~~~~~~~~~~~ 189 (202)
|++....+.+..+.
T Consensus 451 la~aL~el~r~~ea 464 (758)
T KOG1310|consen 451 LARALNELTRYLEA 464 (758)
T ss_pred HHHHHHHHhhHHHh
Confidence 88887777665543
No 349
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.99 E-value=1.9 Score=40.63 Aligned_cols=99 Identities=19% Similarity=0.156 Sum_probs=83.4
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC-----
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN----------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE----- 132 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~----------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----- 132 (202)
..+..+...+..+.+.+++++|+..-.+|.- ++....|.+++...+..++...|+..+.++..+.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 3455667788889999999999999888765 8888999999999999999999999999988762
Q ss_pred ---CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 133 ---PLNVKALFRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 133 ---p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
|.......+++..+...++++.|+.+.+.|....
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444556778999999999999999999998864
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.97 E-value=4.8 Score=30.80 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=51.4
Q ss_pred HHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH
Q 046569 111 CKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 111 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
-+++.+...+|+.....-++.+|.+...-..+-+.+.-.|++++|..-++-+-.++|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 355677888999999999999998888888888888899999999999999999998874
No 351
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.95 E-value=4.4 Score=27.31 Aligned_cols=72 Identities=10% Similarity=0.063 Sum_probs=54.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhhCCCChH---HHHHHHHHHhcCCC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 046569 108 NAACKLKLEDYSEASSLCTKVLELEPLNVK---ALFRRSQAYLKTSE-----------LEKDEADIKRALTIDPNNRDVK 173 (202)
Q Consensus 108 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~g~~~~~~~~-----------~~~A~~~~~~a~~l~p~~~~~~ 173 (202)
+|.-++..|++-+|++..+..+..++++.. .+..-|.++..+.. .-.++++|.++..+.|..+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 567789999999999999999998887654 34445666655542 3469999999999999986655
Q ss_pred HHHHHH
Q 046569 174 LVYMEL 179 (202)
Q Consensus 174 ~~l~~~ 179 (202)
..+++-
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 555543
No 352
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.91 E-value=0.82 Score=28.51 Aligned_cols=31 Identities=16% Similarity=-0.032 Sum_probs=26.3
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
..+..+...|...-..|+|++|+.+|..||+
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale 34 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHH
Confidence 4566777888888889999999999999988
No 353
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=89.86 E-value=1.4 Score=34.39 Aligned_cols=60 Identities=18% Similarity=0.017 Sum_probs=51.3
Q ss_pred HHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 89 ASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 89 A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
|..+|.+|+. |.....|+.+|.++...|+.-.|+-+|-+++-.....+.+.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999 99999999999999999999999999999997766678888888888777
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.62 E-value=14 Score=32.67 Aligned_cols=91 Identities=20% Similarity=0.115 Sum_probs=67.7
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH----------------------------hHHHHHHHHHHHHHHHhcCHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN----------------------------GLRLSCYLNNAACKLKLEDYSEA 121 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~----------------------------~~~~~~~~~~a~~~~~~~~~~~A 121 (202)
+..+.--|......+..+.|.+.+.++++ .....+....+.+.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 33444456666677766677777777766 12334456777788889999999
Q ss_pred HHHHHHHhhhC---C------CChHHHHHHHHHHhcCCCHHHHHHHHH
Q 046569 122 SSLCTKVLELE---P------LNVKALFRRSQAYLKTSELEKDEADIK 160 (202)
Q Consensus 122 ~~~~~~al~~~---p------~~~~~~~~~g~~~~~~~~~~~A~~~~~ 160 (202)
......+.... | -.+..++..|..+...|+.+.|+..|.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 99888777653 2 247789999999999999999999998
No 355
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.61 E-value=3.3 Score=34.69 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=45.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046569 141 RRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQA 191 (202)
Q Consensus 141 ~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 191 (202)
.+..||..+++-+-|+.+..+.+-++|...--+-..+-+.+.++.+.+..|
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999998888888899999988876655
No 356
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=6 Score=31.60 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=37.8
Q ss_pred HHHhHHHHHcCcHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHhcCHH
Q 046569 74 KHDGNLLFRAGKYWRASKKYEKATN----------GLRLSCYLNNAACKLKLEDYS 119 (202)
Q Consensus 74 ~~~g~~~~~~~~~~~A~~~y~~al~----------~~~~~~~~~~a~~~~~~~~~~ 119 (202)
.+.++...+.+++++|+..|.+.+. ........+++..|..+|++.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcc
Confidence 3667788889999999999999987 455667888999999888774
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.23 E-value=0.97 Score=25.01 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhh
Q 046569 106 LNNAACKLKLEDYSEASSLCTKVLEL 131 (202)
Q Consensus 106 ~~~a~~~~~~~~~~~A~~~~~~al~~ 131 (202)
+++|.+|..+|+++.|...++.++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 67899999999999999999999953
No 358
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.09 E-value=9 Score=33.43 Aligned_cols=98 Identities=16% Similarity=-0.040 Sum_probs=75.1
Q ss_pred HHHHHHHHHH--hHHHHH---HHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHH-H
Q 046569 89 ASKKYEKATN--GLRLSC---YLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKR-A 162 (202)
Q Consensus 89 A~~~y~~al~--~~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~-a 162 (202)
++..+...+. +.++.+ .. ++..+...++...+.-....++..+|.+..++.++|.++...|....+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5555555544 333333 33 688888899999999999999999999999999999999988888887777766 8
Q ss_pred HhcCCCCHHHHHHH------HHHHHHHHHHH
Q 046569 163 LTIDPNNRDVKLVY------MELKENQREYA 187 (202)
Q Consensus 163 ~~l~p~~~~~~~~l------~~~~~~~~~~~ 187 (202)
....|.|......+ .++.+.+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTA 159 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHH
Confidence 89999998888887 44444444433
No 359
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.00 E-value=9.1 Score=33.46 Aligned_cols=94 Identities=17% Similarity=0.040 Sum_probs=69.3
Q ss_pred HHHHHhHHHHHc---CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHhhhCCCChHHHHHHHH
Q 046569 72 RKKHDGNLLFRA---GKYWRASKKYEKATNGLRLSCYLNNAACKLKL----EDYSEASSLCTKVLELEPLNVKALFRRSQ 144 (202)
Q Consensus 72 ~~~~~g~~~~~~---~~~~~A~~~y~~al~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 144 (202)
..+..|..+... .++..|..+|..|.......+++++|.||..= .+...|..++.++-+.+ ++.+.+.++.
T Consensus 327 a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~ 404 (552)
T KOG1550|consen 327 AQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGA 404 (552)
T ss_pred HHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHH
Confidence 444556555544 46889999999999988899999999998532 37889999999999998 5666666665
Q ss_pred HHhcC-CCHHHHHHHHHHHHhcCC
Q 046569 145 AYLKT-SELEKDEADIKRALTIDP 167 (202)
Q Consensus 145 ~~~~~-~~~~~A~~~~~~a~~l~p 167 (202)
.+... +.++.+...+.....+--
T Consensus 405 ~~~~g~~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 405 FYEYGVGRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHccccccHHHHHHHHHHHhhh
Confidence 54443 777777766665555543
No 360
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=88.99 E-value=3 Score=30.87 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC
Q 046569 119 SEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 169 (202)
+..++...+.++..| ++..+.+++.++...|+.++|....+++..+.|.+
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 455566677777778 88999999999999999999999999999999943
No 361
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.53 E-value=4.2 Score=32.87 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=57.1
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHHhcCCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 046569 123 SLCTKVLELEPLNVKALFRRSQAYLKTSE------------LEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQ 190 (202)
Q Consensus 123 ~~~~~al~~~p~~~~~~~~~g~~~~~~~~------------~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 190 (202)
.-+++.++-+|.++.+|..+....-..-. .+..+..|++|++.+|++..+...+-++...+-.. ..-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~-~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS-EKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-HHH
Confidence 45788899999999999998866555533 56778899999999999999888888877766422 233
Q ss_pred HHHHHhhhh
Q 046569 191 AEIFGSMLS 199 (202)
Q Consensus 191 ~~~~~~~f~ 199 (202)
.+.|+++..
T Consensus 85 ~~~we~~l~ 93 (321)
T PF08424_consen 85 AKKWEELLF 93 (321)
T ss_pred HHHHHHHHH
Confidence 445666543
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.34 E-value=4.6 Score=25.43 Aligned_cols=61 Identities=15% Similarity=-0.023 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHH---HHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 105 YLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFR---RSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 105 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
....|.=++...+..+|+..+.++++..++.+.-+.. +..+|...|+|.+.+..--.-+++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667888999999999999988876654444 568899999999987765444433
No 363
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=88.22 E-value=0.5 Score=35.30 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=30.1
Q ss_pred CcchHHHHHHhccccccEEEEEecccc-cccCC
Q 046569 1 NVNEGLERAIMTMKKEEQATVTISAEY-LCGHE 32 (202)
Q Consensus 1 ~v~~~~~~~~~~m~~ge~~~~~~~~~~-~~~~~ 32 (202)
+++++|+.+|..|..|++..|+++|.- ||.+.
T Consensus 40 ~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 40 SLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred cchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 478999999999999999999999998 98888
No 364
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.72 E-value=3.8 Score=38.03 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHH-------HHHHHHHhcCCCHHHHH
Q 046569 85 KYWRASKKYEKATN-GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKAL-------FRRSQAYLKTSELEKDE 156 (202)
Q Consensus 85 ~~~~A~~~y~~al~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~~g~~~~~~~~~~~A~ 156 (202)
.+.+|+..|++... +..+-=|...|.+|.++|+|++-++++.-|++.-|++|..- +++-.+.+... ..|.
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 611 (932)
T PRK13184 534 DFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR--REAL 611 (932)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 45666666666555 66667799999999999999999999999999999987654 34444444333 3466
Q ss_pred HHHHHHHhcCCCCHH---HHHHHHHHHH
Q 046569 157 ADIKRALTIDPNNRD---VKLVYMELKE 181 (202)
Q Consensus 157 ~~~~~a~~l~p~~~~---~~~~l~~~~~ 181 (202)
...--++...|.... -+..+..++.
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (932)
T PRK13184 612 VFMLLALWIAPEKISSREEEKFLEILYH 639 (932)
T ss_pred HHHHHHHHhCcccccchHHHHHHHHHHh
Confidence 777778888887643 3444444443
No 365
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.59 E-value=8.7 Score=30.26 Aligned_cols=88 Identities=19% Similarity=0.116 Sum_probs=68.3
Q ss_pred HHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 046569 111 CKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTS-ELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKY 189 (202)
Q Consensus 111 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 189 (202)
++.+...-..|+.....++.++|.+-..|..+-.++..++ +..+-++.+..+++-+|.|-.+.-....+-+.+....-+
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 3445566678999999999999999988888777776664 678889999999999999998888888777777644435
Q ss_pred HHHHHHhhh
Q 046569 190 QAEIFGSML 198 (202)
Q Consensus 190 ~~~~~~~~f 198 (202)
|-.-.+.||
T Consensus 132 ELef~~~~l 140 (318)
T KOG0530|consen 132 ELEFTKLML 140 (318)
T ss_pred hHHHHHHHH
Confidence 555555554
No 366
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=0.67 Score=33.80 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=30.4
Q ss_pred CcchHHHHHHhccccccEEEEEecccc-cccCC
Q 046569 1 NVNEGLERAIMTMKKEEQATVTISAEY-LCGHE 32 (202)
Q Consensus 1 ~v~~~~~~~~~~m~~ge~~~~~~~~~~-~~~~~ 32 (202)
++++|||.++..|..|+.-.+.++|.- ||.+.
T Consensus 41 ~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 41 QLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred CcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 478999999999999999999999999 99988
No 367
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=87.52 E-value=3.3 Score=26.05 Aligned_cols=51 Identities=12% Similarity=0.235 Sum_probs=38.8
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Q 046569 147 LKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSMLSKM 201 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 201 (202)
......+=|+.++.-.++..|+|..+...+....+..++ -++.|.+.||+|
T Consensus 6 ~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~----l~~~Ye~~yGPL 56 (78)
T PF12652_consen 6 REIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQ----LKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH----HHHHHHHHhCCC
Confidence 334455568888888899999999999999888777655 455777777765
No 368
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.21 E-value=11 Score=35.48 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=80.5
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC-----------------
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL----------------- 134 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------------- 134 (202)
.....|+.+|..+.|+.|.-.|.. .+-|..+|..+..+|+|..|.+..++|-.....
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH
Confidence 345789999999999999999876 456778899999999999999999887544210
Q ss_pred --------ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 135 --------NVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 135 --------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
+..-+-.+..-|...|-|++-+..++.++-+...+-..-..++.+..+-
T Consensus 1270 iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1270 ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 2233444666778888999999999999888877766666666665544
No 369
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.00 E-value=2.1 Score=30.22 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCH
Q 046569 102 LSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSEL 152 (202)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 152 (202)
.+.....+...+..|+|.-|...++.++..+|++..+...++.++.++|.-
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 344556666677788888888888888888888888888888777766643
No 370
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.90 E-value=1.9 Score=32.32 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=44.0
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhcCHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN------GLRLSCYLNNAACKLKLEDYSEAS 122 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~------~~~~~~~~~~a~~~~~~~~~~~A~ 122 (202)
.+..+...|. +|-..+.++|+..|.++++ ..+++++..++.+|.++|+++.|-
T Consensus 140 t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 140 TAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4555556665 4457899999999999999 567899999999999999999884
No 371
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=86.83 E-value=2.5 Score=20.63 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHhhhCCCChHHHHHH
Q 046569 117 DYSEASSLCTKVLELEPLNVKALFRR 142 (202)
Q Consensus 117 ~~~~A~~~~~~al~~~p~~~~~~~~~ 142 (202)
+++.|...|++++...|.++..|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34445555555555555555544443
No 372
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=86.79 E-value=6.6 Score=37.25 Aligned_cols=98 Identities=16% Similarity=0.087 Sum_probs=79.7
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHH------HHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC------
Q 046569 68 EACERKKHDGNLLFRAGKYWRASK------KYEKATN---GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE------ 132 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~------~y~~al~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------ 132 (202)
..+....+.|......+.+.+|.+ .+.+... |....+|..++..+..++++++|+....++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 346667778877788888887777 4443333 8899999999999999999999999999987653
Q ss_pred --CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 133 --PLNVKALFRRSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 133 --p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
|+....+-+++...+..++...|+..+.++..+
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 456778888999999999999999999988876
No 373
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.58 E-value=15 Score=32.13 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=80.7
Q ss_pred HHHhHHHHH---cCcHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh-----
Q 046569 74 KHDGNLLFR---AGKYWRASKKYEKATN--------------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL----- 131 (202)
Q Consensus 74 ~~~g~~~~~---~~~~~~A~~~y~~al~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----- 131 (202)
.+.|+.+|. ...|++|...|.-|+. |...+.+..++.+....|+.+.|.+...++|-.
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~ 318 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRAL 318 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHh
Confidence 345555553 5678888888888877 899999999999999999999888877777622
Q ss_pred C----------------CCC---hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q 046569 132 E----------------PLN---VKALFRRSQAYLKTSELEKDEADIKRALTIDPN-NRDVKLVYMELK 180 (202)
Q Consensus 132 ~----------------p~~---~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~~~ 180 (202)
. |.| --++++--..+.+.|-+.-|.+.++-.+.++|. ||-+-..+-.+.
T Consensus 319 hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 319 HPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred ccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 2 222 234455567778899999999999999999998 886655554443
No 374
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=86.58 E-value=17 Score=30.14 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=65.3
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHH--HHHHHHHHHHH--HHhcCHHHHHHHHHHHhhhCC----------
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLR--LSCYLNNAACK--LKLEDYSEASSLCTKVLELEP---------- 133 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~--~~~~~~~a~~~--~~~~~~~~A~~~~~~al~~~p---------- 133 (202)
......++..+|..++|..|...+...+. +.. ...+..++.+| +-.-+|.+|.+.++..+...-
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~ 210 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLK 210 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHH
Confidence 44667788899999999999999999988 222 34555555554 456678899998887664210
Q ss_pred --------------------C---C-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 134 --------------------L---N-----VKALFRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 134 --------------------~---~-----~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
. . ...++.-|.=-...|+|++|+.-+-+++++-
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 211 ELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 0 0 0112222333346789999999988888763
No 375
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.29 E-value=10 Score=27.13 Aligned_cols=81 Identities=9% Similarity=0.001 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 104 CYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 104 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
.+.....+-+...+.+++...+...--+.|+.+..-..-|..+...|++.+|+..|+.+.+-.+..+-.+-.++-+...+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444455556888888888888888889999999888999999999999999999998888888888888888776655
Q ss_pred H
Q 046569 184 R 184 (202)
Q Consensus 184 ~ 184 (202)
+
T Consensus 92 ~ 92 (153)
T TIGR02561 92 G 92 (153)
T ss_pred C
Confidence 3
No 376
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.79 E-value=23 Score=30.92 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=91.0
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh-CCCChHHHHHHHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL-EPLNVKALFRRSQAY 146 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~g~~~ 146 (202)
...+..-.......|++....-.|++++. ..-...|.+.+.-....|+...|-..+..+.++ .|+.+..+..-+..-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 34445555555678999999999999998 777888999888888889999998888888876 467788888888888
Q ss_pred hcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 147 LKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
...|+++.|...+++...--|+..++.....-..++.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 9999999999999999988888766655554444444
No 377
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.66 E-value=20 Score=30.05 Aligned_cols=72 Identities=13% Similarity=-0.006 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh--hCC--CChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLE--LEP--LNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p--~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
.....+.+.+=.+|+..+.|+.|-....++.- .+. .+...+|.+|.+..-+.+|..|..+|-.|+...|.+.
T Consensus 206 e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 206 EGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 34455566667778888889998888877763 222 3355677899999999999999999999999999853
No 378
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.56 E-value=23 Score=30.53 Aligned_cols=92 Identities=20% Similarity=0.139 Sum_probs=72.7
Q ss_pred HHHHHHHHhHH-HHHcCcHHHHHHHHHHHHH-----h----HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhhhCCCC--
Q 046569 69 ACERKKHDGNL-LFRAGKYWRASKKYEKATN-----G----LRLSCYLNNAACKLKLE-DYSEASSLCTKVLELEPLN-- 135 (202)
Q Consensus 69 ~a~~~~~~g~~-~~~~~~~~~A~~~y~~al~-----~----~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~-- 135 (202)
.+....+.|.. ++...+.+.|.+.+++|.. | ....++.-++.+|.... .+..|...+.+++++....
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~ 124 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY 124 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch
Confidence 35556666654 4568999999999999987 3 33567788999998887 8888999999999987654
Q ss_pred --hHHHHHHHHHHhcCCCHHHHHHHHH
Q 046569 136 --VKALFRRSQAYLKTSELEKDEADIK 160 (202)
Q Consensus 136 --~~~~~~~g~~~~~~~~~~~A~~~~~ 160 (202)
.+..+.+++.+.-..|+..|.+.+.
T Consensus 125 wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 125 WSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred hhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 4567778999999999998887753
No 379
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=85.50 E-value=5.8 Score=35.54 Aligned_cols=78 Identities=9% Similarity=0.111 Sum_probs=43.5
Q ss_pred cCcHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHH----------------------hhhCCCCh
Q 046569 83 AGKYWRASKKYEKATN----GLRLSCYLNNAACKLKLEDYSEASSLCTKV----------------------LELEPLNV 136 (202)
Q Consensus 83 ~~~~~~A~~~y~~al~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----------------------l~~~p~~~ 136 (202)
.|+|-.-.+++...-. .....++.++|..+..+..|++|.++|... .+.-|++.
T Consensus 773 lgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s 852 (1189)
T KOG2041|consen 773 LGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDS 852 (1189)
T ss_pred hhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCccc
Confidence 3445444444444322 334445555555555555555555544432 23346777
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Q 046569 137 KALFRRSQAYLKTSELEKDEADIK 160 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~~~~A~~~~~ 160 (202)
+.+-.+|..+...|--++|+++|-
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHH
Confidence 777777777777777777777663
No 380
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.48 E-value=3 Score=20.31 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 046569 150 SELEKDEADIKRALTIDPNNRDVKLVYMELK 180 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~ 180 (202)
|+.+.|...|++++...|.++.+...+....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5688999999999999999998888776653
No 381
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=84.99 E-value=7.1 Score=24.27 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
+..+..+...|...-..|+|.+|+..|..+|+
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVD 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34566777888888889999999999999988
No 382
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.89 E-value=21 Score=29.81 Aligned_cols=102 Identities=15% Similarity=0.064 Sum_probs=78.7
Q ss_pred HcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC----CCHH
Q 046569 82 RAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLE--DYSEASSLCTKVLELEPLNVKALFRRSQAYLKT----SELE 153 (202)
Q Consensus 82 ~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~----~~~~ 153 (202)
+..-.+.-+.....++. |....+|+.+.-++.+.. +|..-+..|.++++.||.+-.+|..+-.+.... ....
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK 166 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch
Confidence 33455666666677777 899999999999998765 478999999999999999988877665444333 3367
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 154 KDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 154 ~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
+-++...+++.-++.|-.+.-....+-..+
T Consensus 167 ~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 167 EELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred hHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 788899999999999988888777765533
No 383
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.74 E-value=1.1 Score=32.77 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=29.0
Q ss_pred CcchHHHHHHhccccccEEEEEecccc-cccCC
Q 046569 1 NVNEGLERAIMTMKKEEQATVTISAEY-LCGHE 32 (202)
Q Consensus 1 ~v~~~~~~~~~~m~~ge~~~~~~~~~~-~~~~~ 32 (202)
.||.|++.++..|+.||+..+.++|.+ |+..+
T Consensus 7 ~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~ 39 (188)
T KOG0549|consen 7 FVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGG 39 (188)
T ss_pred EEecCHHHHhhhhhccccceeccCCcccccccc
Confidence 478999999999999999999999999 98444
No 384
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.20 E-value=12 Score=34.35 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH------------hHHHHHHHHHHHHHH-----H-------hcCHHHH
Q 046569 66 KIEACERKKHDGNLLFRAGKYWRASKKYEKATN------------GLRLSCYLNNAACKL-----K-------LEDYSEA 121 (202)
Q Consensus 66 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~------------~~~~~~~~~~a~~~~-----~-------~~~~~~A 121 (202)
++.....-.+.|..+...|++.+|++.|..+|- .....-+..++.-|. . ....+.+
T Consensus 987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence 355667778899999999999999999999987 222222333332221 1 1223333
Q ss_pred --HHHHHHHhhhCCCChHHHHHH-HHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 122 --SSLCTKVLELEPLNVKALFRR-SQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 122 --~~~~~~al~~~p~~~~~~~~~-g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
+..|-.-..+.|.+.-.-.+. -.++++.+++..|.....+.+++.|..+.+.+...
T Consensus 1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rk 1125 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARK 1125 (1202)
T ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 333333345566554433333 47889999999999999999999998877665443
No 385
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.12 E-value=6 Score=35.90 Aligned_cols=30 Identities=20% Similarity=0.425 Sum_probs=26.8
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
.+..++..|+.+|++|+|++|...|-++|.
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 455667899999999999999999999987
No 386
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.10 E-value=35 Score=31.47 Aligned_cols=104 Identities=18% Similarity=0.038 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh
Q 046569 63 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN-----------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL 131 (202)
Q Consensus 63 ~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~-----------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 131 (202)
.+.......-....+-......+|.+|-.+..++.. .......--.|.+....+++++|++.++.++..
T Consensus 408 ~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~ 487 (894)
T COG2909 408 AELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ 487 (894)
T ss_pred HHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 333334444445566667778899999888887766 233455556777888899999999999999987
Q ss_pred CCCC-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 132 EPLN-----VKALFRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 132 ~p~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
-|.+ ..++...|.+..-.|++++|....+.+.++.
T Consensus 488 L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 488 LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 6643 5678889999999999999999999998883
No 387
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.65 E-value=6.9 Score=24.39 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=7.6
Q ss_pred HHHHHHHHhcCCCCHH
Q 046569 156 EADIKRALTIDPNNRD 171 (202)
Q Consensus 156 ~~~~~~a~~l~p~~~~ 171 (202)
++.+.+++...|+++.
T Consensus 33 Ie~L~q~~~~~pD~~~ 48 (75)
T cd02682 33 IEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHhCCChHH
Confidence 3334444445566544
No 388
>PF12854 PPR_1: PPR repeat
Probab=83.29 E-value=3.8 Score=20.98 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHH
Q 046569 135 NVKALFRRSQAYLKTSELEKDEADIK 160 (202)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~~A~~~~~ 160 (202)
+...|..+-..|.+.|+.++|.+.|+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45556666677777777777776665
No 389
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.50 E-value=20 Score=30.36 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHhcCHH---HH---HHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN-------------GLRLSCYLNNAACKLKLEDYS---EA---SSLCTK 127 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~-------------~~~~~~~~~~a~~~~~~~~~~---~A---~~~~~~ 127 (202)
+-.+.-+.+.|..+.+...|.+|+..+-.|=+ .+.+-+..-+.-||+.+++.. .| +.-+++
T Consensus 160 lmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~k 239 (568)
T KOG2561|consen 160 LMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARK 239 (568)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHH
Confidence 44566778999999999999999998777655 344444455667788877542 22 233333
Q ss_pred Hhhh-------------CCCCh-HHH-----HHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 128 VLEL-------------EPLNV-KAL-----FRRSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 128 al~~-------------~p~~~-~~~-----~~~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
.+.. .+..| .++ +.-|.+.+++|+-++|.++++.+...
T Consensus 240 gf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 240 GFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3322 12222 233 33499999999999999999887543
No 390
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.15 E-value=24 Score=29.98 Aligned_cols=29 Identities=10% Similarity=-0.059 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 046569 100 LRLSCYLNNAACKLKLEDYSEASSLCTKV 128 (202)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 128 (202)
..+..|..+|...+..|+++-|..+|.++
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 34556666666666666666666666554
No 391
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.72 E-value=9.5 Score=31.32 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHhcCHHHHHH
Q 046569 65 EKIEACERKKHDGNLLFRAGKYWRASKKYEKATN----------GLRLSCYLNNAACKLKLEDYSEASS 123 (202)
Q Consensus 65 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~----------~~~~~~~~~~a~~~~~~~~~~~A~~ 123 (202)
+.-..+..+...|+.++..++++.|...|..|.. .....+++..|..++.+++++...-
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566788899999999999999999999999988 5667788888888888887765443
No 392
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.00 E-value=33 Score=36.44 Aligned_cols=86 Identities=9% Similarity=-0.028 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcC----CC----HHHHHHHHHHHHhcCCCCH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKT----SE----LEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~----~~----~~~A~~~~~~a~~l~p~~~ 170 (202)
...+..+...|..+.++|++++|-..|..|++++..-+++|...|.-.... .. -..|+.||-+|.... ++.
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~s 2887 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSS 2887 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cch
Confidence 567778899999999999999999999999999999999999988655432 22 346888887777766 345
Q ss_pred HHHHHHHHHHHHHHH
Q 046569 171 DVKLVYMELKENQRE 185 (202)
Q Consensus 171 ~~~~~l~~~~~~~~~ 185 (202)
-++..++++.-.+.-
T Consensus 2888 kaRk~iakvLwLls~ 2902 (3550)
T KOG0889|consen 2888 KARKLIAKVLWLLSF 2902 (3550)
T ss_pred hhHHHHHHHHHHHHh
Confidence 677777777665543
No 393
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.94 E-value=36 Score=32.29 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC--CC-CHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTID--PN-NRDVKLV 175 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~--p~-~~~~~~~ 175 (202)
-+.+.+|..+|.+.+..+...+|++.|-+ .++|..|...-.+-.+.|.|++-+..+..|-+.- |. +.+....
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFA 1175 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 46678999999999999999999999954 3678899999999999999999999999887763 32 3455555
Q ss_pred HHHHH
Q 046569 176 YMELK 180 (202)
Q Consensus 176 l~~~~ 180 (202)
++++.
T Consensus 1176 yAkt~ 1180 (1666)
T KOG0985|consen 1176 YAKTN 1180 (1666)
T ss_pred HHHhc
Confidence 55543
No 394
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.82 E-value=20 Score=29.37 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh--CCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL--EPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVY 176 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 176 (202)
..++.+-.|++.+..+..=.+.++...+....- -..+...+-.+|..+.++|..++|...|++++.+.++..+.....
T Consensus 326 apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 326 APSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred CCCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 455666678888877766667777766665544 234566777799999999999999999999999999987776665
Q ss_pred HHHH
Q 046569 177 MELK 180 (202)
Q Consensus 177 ~~~~ 180 (202)
.++.
T Consensus 406 ~r~~ 409 (415)
T COG4941 406 QRLD 409 (415)
T ss_pred HHHH
Confidence 5544
No 395
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=79.31 E-value=18 Score=24.90 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh--hCCCChHHHHHHHHHHhcCC
Q 046569 84 GKYWRASKKYEKATN-----------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLE--LEPLNVKALFRRSQAYLKTS 150 (202)
Q Consensus 84 ~~~~~A~~~y~~al~-----------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~g~~~~~~~ 150 (202)
+.-..-...+++++. +....+|...+ ..-+ .+.+.|..... +....+..|...|..+...|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya----~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYA----DLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHH----TTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHH----HHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 444455566666666 33334444433 3333 77777777765 56678888999999999999
Q ss_pred CHHHHHHHHHHHH
Q 046569 151 ELEKDEADIKRAL 163 (202)
Q Consensus 151 ~~~~A~~~~~~a~ 163 (202)
++++|.+.|+.++
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998875
No 396
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=79.07 E-value=15 Score=29.14 Aligned_cols=63 Identities=13% Similarity=0.029 Sum_probs=55.3
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL 131 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 131 (202)
....+.+.+..+...++++.+++..++.+. |..-.+|..+=..|...|+...|+..|.+.-..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 344556677888889999999999999999 999999999999999999999999999887664
No 397
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=78.88 E-value=6 Score=24.91 Aligned_cols=32 Identities=13% Similarity=-0.032 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
.+.|..+.+.|..+-..|+.++|+.+|.+++.
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 34566666777777777777777777777776
No 398
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=78.75 E-value=37 Score=28.26 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=42.5
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH-------hHHHHHHHHHHHHHH--HhcCHHHHHHHHH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN-------GLRLSCYLNNAACKL--KLEDYSEASSLCT 126 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~-------~~~~~~~~~~a~~~~--~~~~~~~A~~~~~ 126 (202)
.....+..+|...+|..|...|..++. ......+..++.+|. -.=++++|.+.++
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 344567789999999999999999988 344566667766665 4557789998888
No 399
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=78.64 E-value=6.2 Score=32.98 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=40.3
Q ss_pred CcchHHHHHHhccccccEEEEEecccc-cccCCcccccCCCceEEEEEEEccccCC
Q 046569 1 NVNEGLERAIMTMKKEEQATVTISAEY-LCGHEVSELVCANSVLYYEVTLIDFTKE 55 (202)
Q Consensus 1 ~v~~~~~~~~~~m~~ge~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~~ 55 (202)
.+++||+.++..|+.|++..|.++... |+..+ .+|..+.|.+.+.++...
T Consensus 182 ~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~-----~~gk~~~f~v~i~~I~~~ 232 (408)
T TIGR00115 182 QFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE-----LAGKEATFKVTVKEVKEK 232 (408)
T ss_pred CcchhHHHHhCCCCCCCeeEEEecCccccCccc-----CCCCeEEEEEEEEEeccC
Confidence 367899999999999999999998554 44332 368899999999998754
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.70 E-value=33 Score=27.61 Aligned_cols=77 Identities=18% Similarity=0.102 Sum_probs=58.0
Q ss_pred ccCCCCccCCCHHHHHHH--HHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 046569 52 FTKEKPFWKMDTHEKIEA--CERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTK 127 (202)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~--a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 127 (202)
+......|.-...+++.. ...+...+..+...|.+.+|++..++++. |.+...+..+-.++..+|+--.|+++|.+
T Consensus 259 l~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 259 LPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred CCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 333445565555555432 23344567788899999999999999999 88889999999999999998888877765
Q ss_pred H
Q 046569 128 V 128 (202)
Q Consensus 128 a 128 (202)
.
T Consensus 339 y 339 (361)
T COG3947 339 Y 339 (361)
T ss_pred H
Confidence 4
No 401
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=77.69 E-value=4.7 Score=19.38 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh
Q 046569 105 YLNNAACKLKLEDYSEASSLCTKVL 129 (202)
Q Consensus 105 ~~~~a~~~~~~~~~~~A~~~~~~al 129 (202)
|+.+-.+|.+.|++++|.+.+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455555555555555555443
No 402
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=77.43 E-value=6.7 Score=19.43 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHHHh
Q 046569 121 ASSLCTKVLELEPLNVKALFRRSQAYL 147 (202)
Q Consensus 121 A~~~~~~al~~~p~~~~~~~~~g~~~~ 147 (202)
.++....++..+|.+..+|..+-.++.
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHH
Confidence 456667777777777777776655543
No 403
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=77.42 E-value=12 Score=23.44 Aligned_cols=16 Identities=6% Similarity=-0.010 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhcCCCC
Q 046569 154 KDEADIKRALTIDPNN 169 (202)
Q Consensus 154 ~A~~~~~~a~~l~p~~ 169 (202)
+|++.|..++...|+.
T Consensus 31 ~aie~l~~~lk~e~d~ 46 (77)
T cd02683 31 EGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHHhhCCCH
Confidence 3444445555556644
No 404
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.05 E-value=19 Score=26.65 Aligned_cols=72 Identities=21% Similarity=0.261 Sum_probs=55.2
Q ss_pred HhHHHHHcCcHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 76 DGNLLFRAGKYWRASKKYEKATN---GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 76 ~g~~~~~~~~~~~A~~~y~~al~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
.+-.+...|.|++-....+..-. |....+.-.+|..-++.|++.+|...|..+.. +...|..-.+++++...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 34556667777776665544433 88889999999999999999999999998887 66677777777776654
No 405
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=76.97 E-value=4.4 Score=32.66 Aligned_cols=67 Identities=7% Similarity=0.152 Sum_probs=53.6
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHH
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLN-NAACKLKLEDYSEASSLCTKVLELEPLNVKALFR 141 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 141 (202)
.-++-..+.+.|.+-...|.+++. |.++++|.- -+.-+...++++-+...+.++++++|++|..|+.
T Consensus 112 ~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 112 QYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 334444456788888999999998 999999876 4455677889999999999999999999876654
No 406
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.92 E-value=53 Score=28.63 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=21.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 046569 144 QAYLKTSELEKDEADIKRALTIDPNNRDVKLVYME 178 (202)
Q Consensus 144 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 178 (202)
.-|....++++|+..+...+++|..|..++.++-.
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 44556666666666666666666666655555543
No 407
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.98 E-value=54 Score=28.49 Aligned_cols=67 Identities=18% Similarity=0.101 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhh------CC-CChHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCCC
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCTKVLEL------EP-LNVKALFRRSQAYLKTSE-LEKDEADIKRALTIDPNN 169 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p-~~~~~~~~~g~~~~~~~~-~~~A~~~~~~a~~l~p~~ 169 (202)
--+.-+|.++..+|+...|..++..+++. ++ -.|.++|-+|..+..++. ..++...+.+|-.-..+.
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 34678899999999999999999888843 12 138899999999999999 999999999998887554
No 408
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=74.29 E-value=24 Score=30.39 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=49.4
Q ss_pred cCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHhhhCCCChHHHH
Q 046569 83 AGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLED-YSEASSLCTKVLELEPLNVKALF 140 (202)
Q Consensus 83 ~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~ 140 (202)
.+.+.+-...|.+++. |+++++|.--|.-.+..+. .+-|...+.++|+.+|+++..|.
T Consensus 118 ~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 118 KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 3448888888999988 9999999988888777776 88999999999999999987654
No 409
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.22 E-value=8.6 Score=32.98 Aligned_cols=94 Identities=18% Similarity=0.120 Sum_probs=65.7
Q ss_pred HhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHH
Q 046569 76 DGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELE 153 (202)
Q Consensus 76 ~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 153 (202)
.+.++-..|+|+.+.....-+=. ..-.....-+-...+++++|++|.......+--.-.+++..---+..-.++|-++
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence 44556667888888777655433 1112222333344568899999999888888766667776666666777888899
Q ss_pred HHHHHHHHHHhcCCCC
Q 046569 154 KDEADIKRALTIDPNN 169 (202)
Q Consensus 154 ~A~~~~~~a~~l~p~~ 169 (202)
+|.-.+++++.++|..
T Consensus 409 ~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 409 KSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHhccCChh
Confidence 9999999999998753
No 410
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=73.07 E-value=10 Score=19.43 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHhhhCCCChHHHHHHH
Q 046569 117 DYSEASSLCTKVLELEPLNVKALFRRS 143 (202)
Q Consensus 117 ~~~~A~~~~~~al~~~p~~~~~~~~~g 143 (202)
+++.|...|++.+...| +++.|...|
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 35556666666666554 355555444
No 411
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=72.69 E-value=47 Score=28.28 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046569 133 PLNVKALFRRSQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 133 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
.+++..|-.+|.....+|+++-|..+|+++-+
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 35788999999999999999999999998743
No 412
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=71.43 E-value=20 Score=32.61 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=13.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHH
Q 046569 141 RRSQAYLKTSELEKDEADIKR 161 (202)
Q Consensus 141 ~~g~~~~~~~~~~~A~~~~~~ 161 (202)
..+..|...|+|+.|.+.|.+
T Consensus 770 ~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHh
Confidence 356666677777766666543
No 413
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.14 E-value=22 Score=27.43 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHH----------hHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHh
Q 046569 87 WRASKKYEKATN----------GLRLSCYLNNAACKLK-LEDYSEASSLCTKVL 129 (202)
Q Consensus 87 ~~A~~~y~~al~----------~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al 129 (202)
+.|...|++|+. |....+..|.+..|+. +|+.++|+.....++
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 445555555555 4444444455544432 556666655555543
No 414
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=70.75 E-value=72 Score=29.54 Aligned_cols=82 Identities=11% Similarity=0.053 Sum_probs=66.4
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC----C--h
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL----N--V 136 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~--~ 136 (202)
+....-.|......|+.+.|+..-..++. -....++...|.+..-.|++.+|......+.++... + .
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~ 537 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLAL 537 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 44445577888899999999999999999 456778899999999999999999999998887432 2 4
Q ss_pred HHHHHHHHHHhcCCC
Q 046569 137 KALFRRSQAYLKTSE 151 (202)
Q Consensus 137 ~~~~~~g~~~~~~~~ 151 (202)
.+.+..+.++..+|+
T Consensus 538 ~~~~~~s~il~~qGq 552 (894)
T COG2909 538 WSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHHhhH
Confidence 455567888999993
No 415
>PF13041 PPR_2: PPR repeat family
Probab=70.41 E-value=16 Score=20.14 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHhhhC
Q 046569 103 SCYLNNAACKLKLEDYSEASSLCTKVLELE 132 (202)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 132 (202)
..|+-+-..|.+.|++++|.+.|++..+.+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 345556666667777777777776666543
No 416
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=69.92 E-value=33 Score=31.04 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCC--CChHHHHHHHHHHhcCCCHHHHHHHHH
Q 046569 84 GKYWRASKKYEKATN-GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEP--LNVKALFRRSQAYLKTSELEKDEADIK 160 (202)
Q Consensus 84 ~~~~~A~~~y~~al~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~~~~~~~~~~A~~~~~ 160 (202)
|+|++|.+.|-.+=. .... ..+.++|+|-...+.+...-.-+. ....++-++|..+..+-.+++|.+.|.
T Consensus 748 g~feeaek~yld~drrDLAi-------elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLAI-------ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred cchhHhhhhhhccchhhhhH-------HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999988877633 2222 234566777776665543221111 124566667777777777777766665
Q ss_pred HH
Q 046569 161 RA 162 (202)
Q Consensus 161 ~a 162 (202)
..
T Consensus 821 ~~ 822 (1189)
T KOG2041|consen 821 YC 822 (1189)
T ss_pred hc
Confidence 44
No 417
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=69.46 E-value=4.1 Score=33.21 Aligned_cols=52 Identities=13% Similarity=0.024 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCC
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTS 150 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 150 (202)
+....+++.++..+..+.+++.|+.++..+....|++....-.+..+-....
T Consensus 306 ~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 306 RSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred hhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 6778899999999999999999999999999999988766555544443333
No 418
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=69.33 E-value=44 Score=26.54 Aligned_cols=88 Identities=15% Similarity=0.135 Sum_probs=58.0
Q ss_pred HHHcCcHHHHHHHHHHHHH--hHH-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC------hHHHH
Q 046569 80 LFRAGKYWRASKKYEKATN--GLR-----------LSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN------VKALF 140 (202)
Q Consensus 80 ~~~~~~~~~A~~~y~~al~--~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 140 (202)
++..++.-.|+..|...+. |.+ ...|.....|+ .--...-|.++++.||-..... .-+.+
T Consensus 5 L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~-s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~ 83 (368)
T COG5091 5 LYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWH-SDATMENAKELLDKALMTAEGRGDRSKIGLVNF 83 (368)
T ss_pred hhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhh-cccChhhHHHHHHHHHHhhhccCCcceeeeehh
Confidence 3444555566777766665 211 22333333333 3345678889999998764321 33577
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 046569 141 RRSQAYLKTSELEKDEADIKRALTIDPN 168 (202)
Q Consensus 141 ~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 168 (202)
+++.+|+...+|+-|..+|.+|..+.-.
T Consensus 84 ~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 84 RYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999998543
No 419
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=69.12 E-value=41 Score=29.42 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=59.4
Q ss_pred HHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 94 EKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 94 ~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
++-|+ |.+.++|+.+-.-+... .++++...|++.+..-|..+.+|-.-...-+..++|+.-...|.+++.--
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv 83 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV 83 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34444 88888998887776555 89999999999999999999999998888899999998888888777654
No 420
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=69.09 E-value=12 Score=18.20 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhh
Q 046569 105 YLNNAACKLKLEDYSEASSLCTKVLE 130 (202)
Q Consensus 105 ~~~~a~~~~~~~~~~~A~~~~~~al~ 130 (202)
|+.+-.+|.+.|++++|...+.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445556666666666666665543
No 421
>PRK01490 tig trigger factor; Provisional
Probab=68.47 E-value=15 Score=30.93 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=39.2
Q ss_pred CcchHHHHHHhccccccEEEEEecccc-cccCCcccccCCCceEEEEEEEccccCC
Q 046569 1 NVNEGLERAIMTMKKEEQATVTISAEY-LCGHEVSELVCANSVLYYEVTLIDFTKE 55 (202)
Q Consensus 1 ~v~~~~~~~~~~m~~ge~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~l~~~~~~ 55 (202)
++++||+.++.+|+.|++..+.++..- |+... -.|..+.|.+.+..+...
T Consensus 193 ~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~-----lagk~~~f~v~v~~V~~~ 243 (435)
T PRK01490 193 RFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED-----LAGKEATFKVTVKEVKEK 243 (435)
T ss_pred CcchhHHHHhCCCCCCCeeEEEecCcccccccc-----CCCCeEEEEEEEEEeccC
Confidence 368899999999999999999886543 43322 367889999999998754
No 422
>PF15469 Sec5: Exocyst complex component Sec5
Probab=68.10 E-value=35 Score=24.91 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=17.3
Q ss_pred HHHHHcCcHHHHHHHHHHHHH
Q 046569 78 NLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 78 ~~~~~~~~~~~A~~~y~~al~ 98 (202)
..+.+.|+|+.++..|.+|-.
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHH
Confidence 344578999999999999876
No 423
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=68.06 E-value=13 Score=22.32 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=10.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHh
Q 046569 143 SQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
|.-.-..|++++|+.+|..+++
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3333344555555555444433
No 424
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.60 E-value=40 Score=26.00 Aligned_cols=99 Identities=9% Similarity=-0.048 Sum_probs=69.9
Q ss_pred HHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChH---HHHHHHHHHhc----
Q 046569 78 NLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVK---ALFRRSQAYLK---- 148 (202)
Q Consensus 78 ~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~g~~~~~---- 148 (202)
..+.+.+..++|+.....-++ |.+......+=..+.-.|+|++|..-++-+-++.|++.. .|-++-.|-..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~ev 88 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNEV 88 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHH
Confidence 457788899999999998888 888888888888889999999999999999999997633 22222211111
Q ss_pred ---------C-CCHHHHHHHHHHHHhcCCC-CHHHHHHH
Q 046569 149 ---------T-SELEKDEADIKRALTIDPN-NRDVKLVY 176 (202)
Q Consensus 149 ---------~-~~~~~A~~~~~~a~~l~p~-~~~~~~~l 176 (202)
. |...+=+..+..++.++.+ ..++...+
T Consensus 89 fag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~al 127 (273)
T COG4455 89 FAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTAL 127 (273)
T ss_pred hccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHH
Confidence 1 2455556667777777665 34444443
No 425
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.37 E-value=51 Score=26.56 Aligned_cols=93 Identities=15% Similarity=0.071 Sum_probs=70.4
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh-----CCCChHHH--
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL-----EPLNVKAL-- 139 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~-- 139 (202)
.....+++.|+|.+|+..-...+. +....++..-+.+|....+..++...+..|-.. +|.-..+-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 456778999999999999888776 777888888889999999888887777666543 34433333
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCC
Q 046569 140 FRRSQAYLKTSELEKDEADIKRALTIDP 167 (202)
Q Consensus 140 ~~~g~~~~~~~~~~~A~~~~~~a~~l~p 167 (202)
..-|..+..-.+|.-|..+|-.+++-.-
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhccc
Confidence 3347777788889999999888877543
No 426
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.33 E-value=87 Score=27.30 Aligned_cols=94 Identities=12% Similarity=-0.011 Sum_probs=64.0
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHH-HHHH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN----GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRR-SQAY 146 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-g~~~ 146 (202)
-+...+..+...|+-+.|+..++.+++ +...-+++.+|-++.-+.+|..|-.++...........-.|-.+ |-|+
T Consensus 269 wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~ 348 (546)
T KOG3783|consen 269 WLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCL 348 (546)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 344566666667778889999999888 67777899999999999999999999988877665333333233 3444
Q ss_pred hc--------CCCHHHHHHHHHHHHhc
Q 046569 147 LK--------TSELEKDEADIKRALTI 165 (202)
Q Consensus 147 ~~--------~~~~~~A~~~~~~a~~l 165 (202)
.. .|+.+.|...++.+.++
T Consensus 349 l~~~~~~q~~~~ne~~a~~~~k~~~~l 375 (546)
T KOG3783|consen 349 LQNWEVNQGAGGNEEKAQLYFKVGEEL 375 (546)
T ss_pred hccHHHHHhcccchhHHHHHHHHHHHH
Confidence 33 34555555555444333
No 427
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=66.33 E-value=16 Score=18.63 Aligned_cols=13 Identities=23% Similarity=0.036 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHh
Q 046569 152 LEKDEADIKRALT 164 (202)
Q Consensus 152 ~~~A~~~~~~a~~ 164 (202)
.++|+..|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 5556666655544
No 428
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=66.24 E-value=21 Score=24.49 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=13.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 046569 142 RSQAYLKTSELEKDEADIKRALTIDPN 168 (202)
Q Consensus 142 ~g~~~~~~~~~~~A~~~~~~a~~l~p~ 168 (202)
+|..+...|++++|..+|-+|+...|+
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 455555555555555555555555544
No 429
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=66.14 E-value=46 Score=23.84 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=48.6
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH---------h-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN---------G-LRLSCYLNNAACKLKLEDYSEASSLCTKVLE 130 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~---------~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 130 (202)
........++..++.|+...|...+..+-. | .....-.+.+..++..|++.+|...+..++.
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 355677889999999999999999988866 3 4445567888999999999999998888764
No 430
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.81 E-value=29 Score=23.10 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 046569 133 PLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVY 176 (202)
Q Consensus 133 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 176 (202)
+-.|-.+-.+|..|...|+-+.|...|+.--.+.|+....-.-+
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 34577788899999999999999999999999999886655444
No 431
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.68 E-value=63 Score=25.26 Aligned_cols=91 Identities=7% Similarity=-0.033 Sum_probs=54.5
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHhhh------CCCC
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-------GLRLSCYLNNAACKLKLEDYS-EASSLCTKVLEL------EPLN 135 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-------~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~~------~p~~ 135 (202)
...++.-+..+++.+++..|.++-.-.|+ +.......+++.++.....-+ +-.+..+++++- .-.+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 44455666788888888888777655555 334444456666666554322 122233333321 2247
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHH
Q 046569 136 VKALFRRSQAYLKTSELEKDEADIK 160 (202)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~~A~~~~~ 160 (202)
+..|..+|..+...+++.+|..+|-
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH
Confidence 8999999999999999999988873
No 432
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.53 E-value=69 Score=25.61 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=63.8
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH----------h------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN----------G------LRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN 135 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~----------~------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 135 (202)
-+-+.++.+.-..+|..|+...+++++ + ....+..---+++..+++|.+++.+.-+-.+.-.+-
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEkl 116 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKL 116 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccC
Confidence 334556778888999999999999998 1 111112222356789999999999886665554444
Q ss_pred hHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcCCCCH
Q 046569 136 VKALFRRSQAYL-KTSELEKDEADIKRALTIDPNNR 170 (202)
Q Consensus 136 ~~~~~~~g~~~~-~~~~~~~A~~~~~~a~~l~p~~~ 170 (202)
|.-...+..+++ +.++. .|....-.+--.+|+|.
T Consensus 117 PpkIleLCILLysKv~Ep-~amlev~~~WL~~p~Nq 151 (309)
T PF07163_consen 117 PPKILELCILLYSKVQEP-AAMLEVASAWLQDPSNQ 151 (309)
T ss_pred CHHHHHHHHHHHHHhcCH-HHHHHHHHHHHhCcccC
Confidence 444445554444 55554 46666666777788873
No 433
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.07 E-value=13 Score=23.14 Aligned_cols=24 Identities=8% Similarity=-0.072 Sum_probs=13.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 142 RSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 142 ~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
.|.-.-..|+|++|+.+|+.++++
T Consensus 12 ~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 12 LAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344444566666666666666544
No 434
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=64.45 E-value=65 Score=27.43 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=73.9
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH------hHHHHHHHHHH----------------HHH-HHhcCHHHHHHHHHH
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN------GLRLSCYLNNA----------------ACK-LKLEDYSEASSLCTK 127 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~------~~~~~~~~~~a----------------~~~-~~~~~~~~A~~~~~~ 127 (202)
...+..|...+..++|.+++..+..||. .....+..+-. .+| ..-|.+-+-..+..+
T Consensus 32 ~~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~r 111 (471)
T KOG4459|consen 32 ELAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLRR 111 (471)
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHHH
Confidence 4556788889999999999999999998 11111222111 011 111222222222222
Q ss_pred Hhh---hCCCC----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 128 VLE---LEPLN----------VKALFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 128 al~---~~p~~----------~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
... ..|.. ...|..+-.+|++.|++.+|++.-...+.-+|++..+++++..-+..+
T Consensus 112 Ckg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l 180 (471)
T KOG4459|consen 112 CKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTML 180 (471)
T ss_pred HhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhcc
Confidence 222 22222 256777899999999999999999999999999999999988766433
No 435
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=64.32 E-value=18 Score=32.91 Aligned_cols=84 Identities=15% Similarity=0.112 Sum_probs=50.7
Q ss_pred HhHHHHHcCcHHHHHHHHHHHHH---------------------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 046569 76 DGNLLFRAGKYWRASKKYEKATN---------------------------GLRLSCYLNNAACKLKLEDYSEASSLCTKV 128 (202)
Q Consensus 76 ~g~~~~~~~~~~~A~~~y~~al~---------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 128 (202)
-|..+-..|+++.|++.|-+|-. ......|...+.-|...|+|+.|...|.++
T Consensus 712 wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 45666677777777777654422 223345566777788888888777766553
Q ss_pred hhh------------------------CCC-ChHHHHHHHHHHhcCCCHHHHHHHH
Q 046569 129 LEL------------------------EPL-NVKALFRRSQAYLKTSELEKDEADI 159 (202)
Q Consensus 129 l~~------------------------~p~-~~~~~~~~g~~~~~~~~~~~A~~~~ 159 (202)
-.. .|. ....|...+.-+-..|+|.+|.+.|
T Consensus 792 ~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 792 DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 211 122 2344555666667777777766555
No 436
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=64.19 E-value=24 Score=29.23 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhh-CCC--------ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Q 046569 106 LNNAACKLKLEDYSEASSLCTKVLEL-EPL--------NVKALFRRSQAYLKTSELEKDEADIKRALTIDPN 168 (202)
Q Consensus 106 ~~~a~~~~~~~~~~~A~~~~~~al~~-~p~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~ 168 (202)
+.+-.+|++++++.-+...+...... .|+ -...+|.+|.+|....++.+|...++.|+...|.
T Consensus 181 NlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 181 NLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 45667799999988766555433321 122 2456888999999999999999999999999887
No 437
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=63.30 E-value=90 Score=26.22 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=62.5
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCH--------------HHHHHHHHHH
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDY--------------SEASSLCTKV 128 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~--------------~~A~~~~~~a 128 (202)
...+..|+..|-.++|+.|...|.-+.+ -..+.++--.|.+.+..+.. +.|...|.++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 3567889999999999999999999988 34445555666666655532 2333344332
Q ss_pred ----hhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 129 ----LELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 129 ----l~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
......-..+.+..+.++...+.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1111223445666778888889888877776666655
No 438
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.95 E-value=32 Score=27.40 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=38.2
Q ss_pred HcCcHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 046569 82 RAGKYWRASKKYEKATN------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLE 130 (202)
Q Consensus 82 ~~~~~~~A~~~y~~al~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 130 (202)
+..+.++|+..|++.++ ..-..++-....+++++++|++-...|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 44578888888888887 55666777777888888888888888877764
No 439
>PRK11619 lytic murein transglycosylase; Provisional
Probab=62.78 E-value=1.1e+02 Score=27.62 Aligned_cols=57 Identities=7% Similarity=0.044 Sum_probs=43.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046569 108 NAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 108 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
+...-+..++|+.+..++...-..........|.+|.++...|+-++|...|+++..
T Consensus 318 r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 318 RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 334455788888877777665443445678899999999999999999999998754
No 440
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=62.65 E-value=18 Score=17.96 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=7.2
Q ss_pred CHHHHHHHHHHHHh
Q 046569 151 ELEKDEADIKRALT 164 (202)
Q Consensus 151 ~~~~A~~~~~~a~~ 164 (202)
+..+|...|+++.+
T Consensus 20 d~~~A~~~~~~Aa~ 33 (36)
T smart00671 20 DLEKALEYYKKAAE 33 (36)
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555555543
No 441
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=62.43 E-value=17 Score=17.69 Aligned_cols=27 Identities=22% Similarity=0.089 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 046569 104 CYLNNAACKLKLEDYSEASSLCTKVLE 130 (202)
Q Consensus 104 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 130 (202)
.|..+-.++.+.|+++.|...++.-.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555666666666666666655443
No 442
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=62.30 E-value=38 Score=27.80 Aligned_cols=92 Identities=12% Similarity=-0.021 Sum_probs=69.9
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh-----CCCChHH--H
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL-----EPLNVKA--L 139 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~--~ 139 (202)
.....++..++|.+|+..-...+. +...+++..-+.+|+.+.+..+|...+..|-.. .|.-..+ -
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 456778899999999999888877 677778888888999999999988877766543 2322222 2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcC
Q 046569 140 FRRSQAYLKTSELEKDEADIKRALTID 166 (202)
Q Consensus 140 ~~~g~~~~~~~~~~~A~~~~~~a~~l~ 166 (202)
..-|..+..-.+|.-|..+|-.|++=.
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccc
Confidence 334777777889999999998888763
No 443
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=62.11 E-value=34 Score=20.93 Aligned_cols=14 Identities=0% Similarity=0.171 Sum_probs=6.4
Q ss_pred HHHHHHHHHhcCCC
Q 046569 155 DEADIKRALTIDPN 168 (202)
Q Consensus 155 A~~~~~~a~~l~p~ 168 (202)
|++.|.+++..+|+
T Consensus 34 a~e~l~~~~~~~~~ 47 (77)
T smart00745 34 AIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHhccCCC
Confidence 34444444445543
No 444
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=61.98 E-value=45 Score=23.11 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhhhCCC---------------ChHHHHHHHHHHhcCCCHHHHHHHHHHH----Hhc
Q 046569 105 YLNNAACKLKLEDYSEASSLCTKVLELEPL---------------NVKALFRRSQAYLKTSELEKDEADIKRA----LTI 165 (202)
Q Consensus 105 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~l 165 (202)
+.++|...++.+++-.++-+|++|+.+..+ ++-...++|.-+..+|+-+-.+.+++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 457888889999999999999999865211 2445778999999999999999888654 445
Q ss_pred CCC
Q 046569 166 DPN 168 (202)
Q Consensus 166 ~p~ 168 (202)
-|.
T Consensus 84 iPQ 86 (140)
T PF10952_consen 84 IPQ 86 (140)
T ss_pred ccC
Confidence 554
No 445
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=61.97 E-value=44 Score=22.16 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCC
Q 046569 104 CYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTS 150 (202)
Q Consensus 104 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~ 150 (202)
.....|..-+-.|+|..|.+...++-+..+..+-.+..-+.+-..+|
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34445555566677777777777776555544445554455554444
No 446
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=61.82 E-value=91 Score=27.60 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=60.6
Q ss_pred HHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHH
Q 046569 80 LFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEA 157 (202)
Q Consensus 80 ~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 157 (202)
+-+....+.+...-+.-+. ..........+..+-..+..+.|-.+|+..+..+|+ ++++..+..+...|-..+|..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 95 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL 95 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence 3344455555555444444 455566778888888889999999999999999998 788888999999999999988
Q ss_pred HHH
Q 046569 158 DIK 160 (202)
Q Consensus 158 ~~~ 160 (202)
.++
T Consensus 96 ~~~ 98 (578)
T PRK15490 96 ILK 98 (578)
T ss_pred HHH
Confidence 887
No 447
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=61.13 E-value=45 Score=29.17 Aligned_cols=83 Identities=13% Similarity=0.049 Sum_probs=61.6
Q ss_pred HHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhh--CCCChHHHHHHHHHHhcCCCHHHHH
Q 046569 81 FRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLEL--EPLNVKALFRRSQAYLKTSELEKDE 156 (202)
Q Consensus 81 ~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~~~~~A~ 156 (202)
.+...+++....|++.+. |..+.+|......-+..++|+.....|.++|.- +-+-++.| +..+....++...+.
T Consensus 30 ~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY--l~YVR~~~~~~~~~r 107 (656)
T KOG1914|consen 30 AQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY--LSYVRETKGKLFGYR 107 (656)
T ss_pred HccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH--HHHHHHHccCcchHH
Confidence 345589999999999999 888999988888888999999999999888753 32222322 455666677776666
Q ss_pred HHHHHHHhc
Q 046569 157 ADIKRALTI 165 (202)
Q Consensus 157 ~~~~~a~~l 165 (202)
+..-+|.++
T Consensus 108 ~~m~qAy~f 116 (656)
T KOG1914|consen 108 EKMVQAYDF 116 (656)
T ss_pred HHHHHHHHH
Confidence 666666655
No 448
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=60.74 E-value=95 Score=25.63 Aligned_cols=109 Identities=21% Similarity=0.166 Sum_probs=74.9
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHhhhCCCChHHHHH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKLEDYSE--ASSLCTKVLELEPLNVKALFR 141 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~ 141 (202)
.=.+-|..+....+|..|-++|-+|.+ .....++-.+-.|-..++..++ ++-....+++.+.....+.-.
T Consensus 211 lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amka 290 (411)
T KOG1463|consen 211 LDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKA 290 (411)
T ss_pred HHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHH
Confidence 334667777777899999999999999 2223333333333334555554 444556677878888999988
Q ss_pred HHHHHhcC--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 142 RSQAYLKT--SELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 142 ~g~~~~~~--~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
.+.++... .+|+.|+..|..-+.-| +-++.++..+...+
T Consensus 291 vAeA~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 291 VAEAFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLYDNL 331 (411)
T ss_pred HHHHhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHHHHH
Confidence 88888654 57889999998777655 56777777765554
No 449
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.18 E-value=98 Score=25.59 Aligned_cols=109 Identities=17% Similarity=0.028 Sum_probs=72.2
Q ss_pred HHHhHHHHHcCcHHHHHHHHHHHHH--------------------------------h---HHHHHHHHHHHHHHHhcCH
Q 046569 74 KHDGNLLFRAGKYWRASKKYEKATN--------------------------------G---LRLSCYLNNAACKLKLEDY 118 (202)
Q Consensus 74 ~~~g~~~~~~~~~~~A~~~y~~al~--------------------------------~---~~~~~~~~~a~~~~~~~~~ 118 (202)
.+.|..++..++|.+....+..+=. + ...-+.+.+|.-|+...++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~ 141 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLNDS 141 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcch
Confidence 3678888888888887766654432 1 2223445667778888898
Q ss_pred HHHHHHHHHHhhhC------------------------CCC-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 046569 119 SEASSLCTKVLELE------------------------PLN-----------VKALFRRSQAYLKTSELEKDEADIKRAL 163 (202)
Q Consensus 119 ~~A~~~~~~al~~~------------------------p~~-----------~~~~~~~g~~~~~~~~~~~A~~~~~~a~ 163 (202)
+.|+--++++.+.. |+. ...|.++..-|....++-.+...|..++
T Consensus 142 ~~ArVEfnRan~rQ~~AKe~~~~ei~ka~~e~ds~k~~~N~~~~~ae~s~~i~n~Y~ny~~~yea~~~l~npYv~Yl~~l 221 (449)
T COG3014 142 AKARVEFNRANERQRRAKEFYYEEVQKAIKEIDSSKHNINMERSRAEVSEILNNTYSNYLDKYEAYQGLLNPYVSYLSGL 221 (449)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 88887777766442 221 1235556667777777777888888888
Q ss_pred hcCCCCHHHHHHHHHHHHHH
Q 046569 164 TIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 164 ~l~p~~~~~~~~l~~~~~~~ 183 (202)
-..|++ .+.+....+.++.
T Consensus 222 f~a~n~-dv~kg~~~~~e~~ 240 (449)
T COG3014 222 FYALNG-DVNKGLGYLNEAY 240 (449)
T ss_pred hcccCc-cHhHHHHHHHHHh
Confidence 888877 6666666665554
No 450
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=58.02 E-value=65 Score=22.83 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=22.0
Q ss_pred HHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046569 124 LCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 124 ~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
.+.....-+..+|+.+..+|.+|...|+..+|-+.+.+|=+
T Consensus 108 i~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 108 IYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33444444445667777777777777777777776666644
No 451
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.62 E-value=94 Score=24.29 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=40.1
Q ss_pred HHHHHHHHhHHHHHcCcHHHHHHHHHHHHH------------------hHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHh
Q 046569 69 ACERKKHDGNLLFRAGKYWRASKKYEKATN------------------GLRLSCYLNNAAC-KLKLEDYSEASSLCTKVL 129 (202)
Q Consensus 69 ~a~~~~~~g~~~~~~~~~~~A~~~y~~al~------------------~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~al 129 (202)
...-+...|..+++.++|.+|..+|-.+=. +...+.+.-+|.. |+.+++...|...++.-+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345566778888888888888887633322 5556666666554 667899998888666655
Q ss_pred hh
Q 046569 130 EL 131 (202)
Q Consensus 130 ~~ 131 (202)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 452
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.37 E-value=25 Score=26.11 Aligned_cols=38 Identities=18% Similarity=0.442 Sum_probs=30.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046569 143 SQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKE 181 (202)
Q Consensus 143 g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 181 (202)
..++...|.|++|.+.+++... +|++...+..|..+-+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~ 155 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHH
Confidence 4678899999999999999999 8888766666655543
No 453
>PF13041 PPR_2: PPR repeat family
Probab=54.91 E-value=34 Score=18.72 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CCCCHH
Q 046569 135 NVKALFRRSQAYLKTSELEKDEADIKRALTI--DPNNRD 171 (202)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l--~p~~~~ 171 (202)
+...|..+-..+.+.|++++|.+.|++..+. .|+...
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~T 40 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYT 40 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence 4566777889999999999999999998876 344433
No 454
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=54.57 E-value=61 Score=21.47 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHhc
Q 046569 65 EKIEACERKKHDGNLLFRAGKYWRASKKYEKATN--GLRLSCYLNNAACKLKLE 116 (202)
Q Consensus 65 ~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--~~~~~~~~~~a~~~~~~~ 116 (202)
-+.+.+......|-..+-.|+|..|.+...++-+ +.....|..-+.+-..+|
T Consensus 54 rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 54 RRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3556777888999999999999999999999977 333333444444444444
No 455
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=54.48 E-value=32 Score=30.09 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=14.7
Q ss_pred ChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 046569 135 NVKALFRRSQAYLKTSELEKDEADIKRAL 163 (202)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~ 163 (202)
+...|..+|..|++.++|.+|+..+-.+-
T Consensus 317 HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 317 HVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp -SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554443
No 456
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.28 E-value=30 Score=21.76 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=20.3
Q ss_pred cCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046569 116 EDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 116 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
+.|+.|....+++|..+. .|+.++|+.+|++++.
T Consensus 3 ~~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRADE---------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHH
Confidence 346677777777776664 3455555555555544
No 457
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.70 E-value=71 Score=26.03 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 66 KIEACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 66 ~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
.+..+-.+...+...-..++|.+|+.+|+.|++
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHH
Confidence 556677788888888899999999999999988
No 458
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=53.39 E-value=51 Score=20.22 Aligned_cols=13 Identities=15% Similarity=0.059 Sum_probs=5.8
Q ss_pred HHHHHHHHHhcCC
Q 046569 155 DEADIKRALTIDP 167 (202)
Q Consensus 155 A~~~~~~a~~l~p 167 (202)
|++.|..++...|
T Consensus 32 aie~l~~~~k~e~ 44 (75)
T cd02678 32 ALEYFMHALKYEK 44 (75)
T ss_pred HHHHHHHHHhhCC
Confidence 3344444444555
No 459
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=53.30 E-value=50 Score=20.11 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=5.3
Q ss_pred HHHHHHHHhcCCC
Q 046569 156 EADIKRALTIDPN 168 (202)
Q Consensus 156 ~~~~~~a~~l~p~ 168 (202)
++.|..++...|+
T Consensus 33 ~e~l~~~~~~~~~ 45 (75)
T cd02656 33 LDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHhccCCC
Confidence 3333444444443
No 460
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=52.78 E-value=68 Score=21.48 Aligned_cols=40 Identities=8% Similarity=0.043 Sum_probs=32.5
Q ss_pred cCCCHHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 59 WKMDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
+..+...-...+..+..+|..++..|+.+.|--.|.+.+.
T Consensus 27 ~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~ 66 (115)
T PF08969_consen 27 KNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLT 66 (115)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556777788999999999999999999999988888776
No 461
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=52.43 E-value=54 Score=20.25 Aligned_cols=17 Identities=12% Similarity=-0.007 Sum_probs=7.6
Q ss_pred cCCCHHHHHHHHHHHHh
Q 046569 148 KTSELEKDEADIKRALT 164 (202)
Q Consensus 148 ~~~~~~~A~~~~~~a~~ 164 (202)
..|++++|+.+|..+++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34444444444444433
No 462
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.75 E-value=43 Score=23.51 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=30.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 046569 142 RSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYM 177 (202)
Q Consensus 142 ~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 177 (202)
+|..+...|+++++..++-.|+.+.|.-.....-+.
T Consensus 87 lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vlq 122 (143)
T KOG4056|consen 87 LGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVLQ 122 (143)
T ss_pred hHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 799999999999999999999999988666555543
No 463
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=49.99 E-value=89 Score=24.32 Aligned_cols=11 Identities=18% Similarity=0.317 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 046569 88 RASKKYEKATN 98 (202)
Q Consensus 88 ~A~~~y~~al~ 98 (202)
.|...|+.|++
T Consensus 146 ~a~~aY~~A~e 156 (244)
T smart00101 146 NTLVAYKSAQD 156 (244)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 464
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=49.31 E-value=1.3e+02 Score=23.87 Aligned_cols=107 Identities=8% Similarity=0.116 Sum_probs=68.8
Q ss_pred HhHHHHHcCcHHHHHHHHHHHHH------hHHHHHHHHHHHH--HHHhcCH----HHHHHHHHHHhhhCCCChHHHHHHH
Q 046569 76 DGNLLFRAGKYWRASKKYEKATN------GLRLSCYLNNAAC--KLKLEDY----SEASSLCTKVLELEPLNVKALFRRS 143 (202)
Q Consensus 76 ~g~~~~~~~~~~~A~~~y~~al~------~~~~~~~~~~a~~--~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~~g 143 (202)
.-..+.+.++|++--..|.+... +.... |...... .+.+... ..-...++.=+...|++..++..+|
T Consensus 6 ~ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g 84 (277)
T PF13226_consen 6 DIRELLQARDFAELDALLARLLQAWLQSRDGEQR-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMG 84 (277)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhhhhccCccch-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHH
Confidence 34567788999998888888876 11111 2221111 1122111 1234445555678899988888888
Q ss_pred HHHhcCC----------------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 144 QAYLKTS----------------------ELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 144 ~~~~~~~----------------------~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
..+.... -.+.|...+.+|+.++|....+-..+..+-..+
T Consensus 85 ~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~f 146 (277)
T PF13226_consen 85 MYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYF 146 (277)
T ss_pred HHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhc
Confidence 7776542 256899999999999999988877777665443
No 465
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.18 E-value=79 Score=21.66 Aligned_cols=42 Identities=10% Similarity=0.009 Sum_probs=33.4
Q ss_pred HHHHHHHHHHH----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 046569 88 RASKKYEKATN----GLRLSCYLNNAACKLKLEDYSEASSLCTKVL 129 (202)
Q Consensus 88 ~A~~~y~~al~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 129 (202)
++...|.-... ...+..|..-|..+...|++.+|...++.+|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 55666665555 7788889999999999999999999998775
No 466
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=48.77 E-value=86 Score=21.51 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=18.0
Q ss_pred HHHHHHhHHHHHcCcHHHHHHHHHHHHH
Q 046569 71 ERKKHDGNLLFRAGKYWRASKKYEKATN 98 (202)
Q Consensus 71 ~~~~~~g~~~~~~~~~~~A~~~y~~al~ 98 (202)
....+.|..+...|++.+|..+|-+||.
T Consensus 64 l~qV~lGE~L~~~G~~~~aa~hf~nAl~ 91 (121)
T PF02064_consen 64 LQQVQLGEQLLAQGDYEEAAEHFYNALK 91 (121)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3344667777777777777777777766
No 467
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.23 E-value=2.5e+02 Score=29.46 Aligned_cols=103 Identities=17% Similarity=0.076 Sum_probs=75.2
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhC-CC----------C-
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATNGLRLSCYLNNAACKLKLEDYSEASSLCTKVLELE-PL----------N- 135 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~----------~- 135 (202)
..++.+.+.|....+.|.++.|-...-+|.+...+.++..+|..++..|+-..|+..+++.++.+ |+ .
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence 34556667777777889999999998888886688899999999999999999999999999664 22 1
Q ss_pred -----hHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcCCCCH
Q 046569 136 -----VKALFRRSQAYLKTSEL--EKDEADIKRALTIDPNNR 170 (202)
Q Consensus 136 -----~~~~~~~g~~~~~~~~~--~~A~~~~~~a~~l~p~~~ 170 (202)
.++.+..+.-....+++ .+-+..|+.+..+.|...
T Consensus 1748 n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe 1789 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE 1789 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc
Confidence 12333344444444443 345677888888888543
No 468
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.19 E-value=78 Score=23.21 Aligned_cols=44 Identities=20% Similarity=0.105 Sum_probs=36.1
Q ss_pred HHHHHHHHH-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCC
Q 046569 90 SKKYEKATN-GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEP 133 (202)
Q Consensus 90 ~~~y~~al~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 133 (202)
++...+.+. ...+.++.+++.++...|+.++|.....++..+-|
T Consensus 131 ~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 333444444 45788899999999999999999999999999999
No 469
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=47.23 E-value=1e+02 Score=26.64 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=51.6
Q ss_pred HHHHHH--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 046569 93 YEKATN--GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRAL 163 (202)
Q Consensus 93 y~~al~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~ 163 (202)
|.+++. +..+.+|+--.......++-..|+.....+++..|. ..+.++.+|.-.++-+.-..||++..
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~ 360 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT 360 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence 455555 778888988888888999999999988888877775 66778888877777666666555543
No 470
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.21 E-value=34 Score=28.26 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCC--------CChHHHHHHHHHHhcCCCHHHHHHHHH
Q 046569 102 LSCYLNNAACKLKLEDYSEASSLCTKVLELEP--------LNVKALFRRSQAYLKTSELEKDEADIK 160 (202)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~~g~~~~~~~~~~~A~~~~~ 160 (202)
..-+...|.-++.+++++.|.+.|+.|..+.. .+..++|..|.+++..++++.++..+-
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~na 107 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNA 107 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33456677888899999999999999987742 357889999999999999988876553
No 471
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=46.86 E-value=30 Score=28.83 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCH
Q 046569 119 SEASSLCTKVLELEPLNVKALFRRSQAYLKTSEL 152 (202)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 152 (202)
..|+.++.+|.. .+.|..|..+|.++..+|+.
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 355555555554 56788888888888888764
No 472
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=46.79 E-value=1.3e+02 Score=22.96 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHH-Hh-hhCCCChHHHHHHHHHHhcCCCHHH
Q 046569 102 LSCYLNNAACKLKL-EDYSEASSLCTK-VL-ELEPLNVKALFRRSQAYLKTSELEK 154 (202)
Q Consensus 102 ~~~~~~~a~~~~~~-~~~~~A~~~~~~-al-~~~p~~~~~~~~~g~~~~~~~~~~~ 154 (202)
..+.++-|..|... ..|-+++..+.. ++ .-+|....++.++|.+...+-.+-+
T Consensus 25 ~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~ 80 (215)
T cd07642 25 VKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFK 80 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444322 234444444444 22 2223334455555555555444433
No 473
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=46.67 E-value=61 Score=19.20 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=25.4
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH------hHHHHHH--HHHHHHHHHhcCHHHHHH
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN------GLRLSCY--LNNAACKLKLEDYSEASS 123 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~------~~~~~~~--~~~a~~~~~~~~~~~A~~ 123 (202)
..|..++..|+|-+|.+.++..=. ......+ ..-|..+.+.|+...|..
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 456667777777777777666543 1122222 223333445566666554
No 474
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.29 E-value=52 Score=19.43 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH
Q 046569 139 LFRRSQAYLKTSELEKDEADIKR 161 (202)
Q Consensus 139 ~~~~g~~~~~~~~~~~A~~~~~~ 161 (202)
+...-..+..+|++++|.+++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 33334444444555544444433
No 475
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.09 E-value=1.7e+02 Score=24.21 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhhCCCC--hHHHHHHHHHHhcCCCHHHHHHHH
Q 046569 106 LNNAACKLKLEDYSEASSLCTKVLELEPLN--VKALFRRSQAYLKTSELEKDEADI 159 (202)
Q Consensus 106 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~g~~~~~~~~~~~A~~~~ 159 (202)
..++.|-.++|+..+|++.++...+--|-. ...+-++-.++..+.-|.+--..+
T Consensus 279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888899999988888877766622 334445555555554444433333
No 476
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=45.18 E-value=1.1e+02 Score=21.71 Aligned_cols=45 Identities=4% Similarity=-0.025 Sum_probs=19.2
Q ss_pred HHHHH-HHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 046569 139 LFRRS-QAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQ 183 (202)
Q Consensus 139 ~~~~g-~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 183 (202)
|..+| .++...|.-+.=...+.....-...+|+....++...+++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~kl 133 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKL 133 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHh
Confidence 44444 3344455555444444444444444566666666555554
No 477
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=44.79 E-value=2.3e+02 Score=25.23 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=26.5
Q ss_pred HhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCC
Q 046569 114 KLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 114 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~ 169 (202)
+....+.+....+.-+-......-..+..+..+...++.++|.++|++.+..+|+|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDE 75 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc
Confidence 33333433333333333333344445555555555555555555555555555554
No 478
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.09 E-value=1.8e+02 Score=23.88 Aligned_cols=84 Identities=19% Similarity=0.223 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC--------ChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CCC
Q 046569 99 GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL--------NVKALFRRSQAYLKTSELEKDEADIKRALTI--DPN 168 (202)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l--~p~ 168 (202)
..-..+...+|.+|-+.++|..|-..+.- +.++.. ....+.++|..|...++-.+|.....++--+ +..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 45566788999999999999998776643 333321 1345778999999999999999999887555 567
Q ss_pred CHHHHHHHHHHHHHH
Q 046569 169 NRDVKLVYMELKENQ 183 (202)
Q Consensus 169 ~~~~~~~l~~~~~~~ 183 (202)
|+.....+.-|..+.
T Consensus 179 Ne~Lqie~kvc~ARv 193 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARV 193 (399)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888887777776655
No 479
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=43.25 E-value=1.9e+02 Score=25.39 Aligned_cols=56 Identities=16% Similarity=0.129 Sum_probs=43.0
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN--------------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLE 130 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 130 (202)
.....+...|.-.+++.+...+.. |....+|...+.||...+.+..|...+.+++.
T Consensus 156 ~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ 225 (542)
T PF14858_consen 156 TICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALA 225 (542)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334445566777777777655543 88899999999999999999999998888763
No 480
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=43.05 E-value=77 Score=26.00 Aligned_cols=46 Identities=15% Similarity=0.046 Sum_probs=37.6
Q ss_pred cCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHH
Q 046569 116 EDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKR 161 (202)
Q Consensus 116 ~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 161 (202)
...-+|+-.++.++...|.+....+.+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3445788888888888899999988899999999998888877753
No 481
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=42.93 E-value=2.2e+02 Score=24.62 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHH--HHHHhcCCCHHHHHHHHHHHHhcCCCC
Q 046569 101 RLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRR--SQAYLKTSELEKDEADIKRALTIDPNN 169 (202)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~--g~~~~~~~~~~~A~~~~~~a~~l~p~~ 169 (202)
.......+..+.+ ..+-..|+..|..||..+|..+.-.+.. ..+...+.+---.+..|+.++..||.-
T Consensus 312 lvetH~~RV~Aml-NdrrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkk 381 (615)
T KOG3540|consen 312 LVETHEARVEAML-NDRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKK 381 (615)
T ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 3334444444432 3445689999999999999877654443 333444555556899999999999975
No 482
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=42.64 E-value=65 Score=27.28 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcCCC--CHHHHHHHHHH-HH
Q 046569 106 LNNAACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTS-ELEKDEADIKRALTIDPN--NRDVKLVYMEL-KE 181 (202)
Q Consensus 106 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~-~~~~A~~~~~~a~~l~p~--~~~~~~~l~~~-~~ 181 (202)
+..|.+|+-+++|.+|++.|..+|-.-...-+..-..+.++...+ +.+.--..+..++.+.|. |..+..-++.. -.
T Consensus 276 Y~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d 355 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGD 355 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcc
Confidence 677888888888998888887776442211222233333343333 233344455566777774 34444444443 11
Q ss_pred HHHHHHHHHHHHHHhhhhcC
Q 046569 182 NQREYAKYQAEIFGSMLSKM 201 (202)
Q Consensus 182 ~~~~~~~~~~~~~~~~f~~~ 201 (202)
.+=..+..+-+.|+.||.++
T Consensus 356 ~ml~mqng~~q~~ks~f~y~ 375 (525)
T KOG3677|consen 356 KMLPMQNGDPQVFKSLFSYL 375 (525)
T ss_pred hhhhhhcCChHHHHHHHHHc
Confidence 11122346667788887653
No 483
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=42.13 E-value=88 Score=19.75 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 046569 152 LEKDEADIKRALTIDPNNRDVKLVYMELKE 181 (202)
Q Consensus 152 ~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~ 181 (202)
..+++..-...++.+|+||.++-.+..+..
T Consensus 23 ~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l~ 52 (80)
T PRK15326 23 LQTQVTEALDKLAAKPSDPALLAAYQSKLS 52 (80)
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 334444444555566666665555544433
No 484
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=41.42 E-value=78 Score=22.57 Aligned_cols=35 Identities=11% Similarity=0.327 Sum_probs=28.1
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 046569 142 RSQAYLKTS-ELEKDEADIKRALTIDPNNRDVKLVY 176 (202)
Q Consensus 142 ~g~~~~~~~-~~~~A~~~~~~a~~l~p~~~~~~~~l 176 (202)
+|..+...| +.++|..+|-+|+...|.=.....-+
T Consensus 96 ~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iy 131 (148)
T TIGR00985 96 LGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIY 131 (148)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 799999999 89999999999999988754444433
No 485
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=41.22 E-value=78 Score=18.90 Aligned_cols=46 Identities=20% Similarity=0.115 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 046569 155 DEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSMLSK 200 (202)
Q Consensus 155 A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 200 (202)
....|...++..-.++.+.....++++-..+...+.+....+++.+
T Consensus 15 s~~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~~ 60 (67)
T cd00633 15 SEEEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLEK 60 (67)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Confidence 4556777777777888899999999888888777777777776654
No 486
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=40.51 E-value=1.3e+02 Score=21.11 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=24.4
Q ss_pred HHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhc
Q 046569 113 LKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLK 148 (202)
Q Consensus 113 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 148 (202)
+..-+.+.|...|..+++..|++..++..+-..+-.
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 334456788889999999999998888777655543
No 487
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=40.00 E-value=67 Score=31.13 Aligned_cols=48 Identities=29% Similarity=0.263 Sum_probs=37.7
Q ss_pred HHHHHHHHHhHHHHHcCcHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHh
Q 046569 68 EACERKKHDGNLLFRAGKYWRASKKYEKATN--------GLRLSCYLNNAACKLKL 115 (202)
Q Consensus 68 ~~a~~~~~~g~~~~~~~~~~~A~~~y~~al~--------~~~~~~~~~~a~~~~~~ 115 (202)
...+..+-.|+.+...|.|.+|+..|..|+. -..+.++-.++.|..-+
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~ 295 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLL 295 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999998 35556666666665443
No 488
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.87 E-value=2.1e+02 Score=23.49 Aligned_cols=96 Identities=10% Similarity=0.008 Sum_probs=67.8
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh--hCCCChHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN---------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLE--LEPLNVKA 138 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 138 (202)
+.-....+..|-+.++|.+|.+.+.-.=. ......+..+|..|+..++..+|..+.+++-- .+..|+..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Confidence 33445688889999999998877543211 45566788999999999999999999988743 33445433
Q ss_pred HHH----HHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 139 LFR----RSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 139 ~~~----~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
... .|.++-..++|-+|...|.+....
T Consensus 183 qie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 183 QIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 466677778888888887766554
No 489
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.73 E-value=1.6e+02 Score=24.57 Aligned_cols=83 Identities=13% Similarity=0.015 Sum_probs=49.9
Q ss_pred HHHHHHHhHHHHHcCcHHHHHHHHHHHHH-------hHHHHHHHHHHHHHH-HhcCHHHHHHHH-HHHhhhCCCChHHHH
Q 046569 70 CERKKHDGNLLFRAGKYWRASKKYEKATN-------GLRLSCYLNNAACKL-KLEDYSEASSLC-TKVLELEPLNVKALF 140 (202)
Q Consensus 70 a~~~~~~g~~~~~~~~~~~A~~~y~~al~-------~~~~~~~~~~a~~~~-~~~~~~~A~~~~-~~al~~~p~~~~~~~ 140 (202)
..-++.-|..+...++|+.|+-+|..++- ....++|...-.+++ -.|+...-=+.. +-+++.-......|.
T Consensus 183 L~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~~K~ms~pY~ 262 (422)
T KOG2582|consen 183 LLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRFFKPMSNPYH 262 (422)
T ss_pred HHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHhcccCCchHH
Confidence 34556777888889999999999999988 233344444333332 234432111111 233344444556788
Q ss_pred HHHHHHhcCCCH
Q 046569 141 RRSQAYLKTSEL 152 (202)
Q Consensus 141 ~~g~~~~~~~~~ 152 (202)
.++.+|.....-
T Consensus 263 ef~~~Y~~~~~~ 274 (422)
T KOG2582|consen 263 EFLNVYLKDSST 274 (422)
T ss_pred HHHHHHhcCCcH
Confidence 888888877655
No 490
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=39.68 E-value=69 Score=21.05 Aligned_cols=56 Identities=13% Similarity=0.006 Sum_probs=24.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046569 109 AACKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 109 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
+..|+..++.+.-+..+....+.-..-|....-.+.+...-.+..+|...+++...
T Consensus 21 s~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~~L~~A~~~~~~y~~ 76 (100)
T PF08771_consen 21 SRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGRDLQEAREWLKRYER 76 (100)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555665555555555443222222222233333333445555555555443
No 491
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=39.47 E-value=1.4e+02 Score=21.33 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=66.3
Q ss_pred HHHHHhHHHHHcCcHHHHHHHHHHHHH-----------------------------------------hHHHHHHHHHHH
Q 046569 72 RKKHDGNLLFRAGKYWRASKKYEKATN-----------------------------------------GLRLSCYLNNAA 110 (202)
Q Consensus 72 ~~~~~g~~~~~~~~~~~A~~~y~~al~-----------------------------------------~~~~~~~~~~a~ 110 (202)
.....+......|+.++|+....+|.. ..........+.
T Consensus 4 ~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~ 83 (155)
T PF10938_consen 4 RDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTAN 83 (155)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHH
Confidence 334566677788999999999988876 233445677788
Q ss_pred HHHHhcCHHHHHHHHHHHh-hhC------C-CChHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 046569 111 CKLKLEDYSEASSLCTKVL-ELE------P-LNVKALFRRSQAYLKTSELEKDEADIKRALT 164 (202)
Q Consensus 111 ~~~~~~~~~~A~~~~~~al-~~~------p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~ 164 (202)
-.++.|+...|.+.+.-+- +++ | .........+..+...|++.+|...+..++.
T Consensus 84 ~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 84 ELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8899999999988876552 121 2 2345566789999999999999999988864
No 492
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=39.01 E-value=95 Score=19.20 Aligned_cols=16 Identities=6% Similarity=0.088 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHHhc
Q 046569 150 SELEKDEADIKRALTI 165 (202)
Q Consensus 150 ~~~~~A~~~~~~a~~l 165 (202)
|+|++|..+|..+++.
T Consensus 20 ~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 20 GDYEAAFEFYRAGVDL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5555555555555443
No 493
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=38.68 E-value=2.1e+02 Score=23.93 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=46.2
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCC
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN-----------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPL 134 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~-----------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 134 (202)
-.-..|++.++.+.+-+.+...-. ..-....+.+|.+|+-..++.+|...++.|+...|+
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 344677888888877666544333 233456789999999999999999999999999886
No 494
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.39 E-value=1.3e+02 Score=26.13 Aligned_cols=58 Identities=9% Similarity=0.158 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046569 139 LFRRSQAYLKTSELEKDEADIKRALTIDPNNRDVKLVYMELKENQREYAKYQAEIFGSML 198 (202)
Q Consensus 139 ~~~~g~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 198 (202)
...+|.--+..|+|.=+.+.+.+++--+|+|..++.+.+.+.+.+.=+ .|..-|+.+|
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYq--aE~A~wRn~y 512 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQ--AESATWRNFY 512 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhh--hccchhhhhH
Confidence 455788888999999999999999999999999999999998888432 2444455443
No 495
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.28 E-value=52 Score=21.94 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHHHHHcCcHHHHHHHHHHH
Q 046569 67 IEACERKKHDGNLLFRAGKYWRASKKYEKA 96 (202)
Q Consensus 67 ~~~a~~~~~~g~~~~~~~~~~~A~~~y~~a 96 (202)
+.....+.+.+..|+.+|.+.+|++...+.
T Consensus 36 L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 36 LKEHGKYQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred HHHcCCHHHHHHHHHccCccHHHHHHHHHH
Confidence 334444445555555555555555554443
No 496
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=38.03 E-value=1.7e+02 Score=24.78 Aligned_cols=54 Identities=20% Similarity=0.099 Sum_probs=39.9
Q ss_pred HcCcHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCC
Q 046569 82 RAGKYWRASKKYEKATN------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLN 135 (202)
Q Consensus 82 ~~~~~~~A~~~y~~al~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 135 (202)
..+.|+.|-..-.++.- ...+..++.+|.+..-..+|..|.+++-.|++..|++
T Consensus 221 ~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 221 HNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred hhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 34445555444444432 4566777889999999999999999999999999974
No 497
>PF15469 Sec5: Exocyst complex component Sec5
Probab=37.22 E-value=1.5e+02 Score=21.51 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=22.2
Q ss_pred hcCCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHH
Q 046569 147 LKTSELEKDEADIKRALTIDP----NNRDVKLVYMELKENQREYA 187 (202)
Q Consensus 147 ~~~~~~~~A~~~~~~a~~l~p----~~~~~~~~l~~~~~~~~~~~ 187 (202)
...|+|+.++.+|.++..+.. ..+........+...+...+
T Consensus 97 i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r 141 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFR 141 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666632 22344555555555554443
No 498
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.02 E-value=2.2e+02 Score=22.89 Aligned_cols=110 Identities=16% Similarity=0.187 Sum_probs=71.7
Q ss_pred HHhHHHHHcCcHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhhCCCChHHHH
Q 046569 75 HDGNLLFRAGKYWRASKKYEKATN--------------GLRLSCYLNNAACKLKLEDYSEASSLCTKVLELEPLNVKALF 140 (202)
Q Consensus 75 ~~g~~~~~~~~~~~A~~~y~~al~--------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 140 (202)
..|..+|..++|..--.+..+.-. .....+|----..|-..++..+-...|.+++.+...-|..+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 467788888888776666555433 344556666667777777777777788888887654333322
Q ss_pred H------HHHHHhcCCCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHH
Q 046569 141 R------RSQAYLKTSELEKDEADIKRALTID-----PNNRDVKLVYMELKENQR 184 (202)
Q Consensus 141 ~------~g~~~~~~~~~~~A~~~~~~a~~l~-----p~~~~~~~~l~~~~~~~~ 184 (202)
. =|..+..-|+|++|--+|=.|++-. |.-..+.+.+......++
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmk 284 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMK 284 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHH
Confidence 1 2567788889999888887777653 222456666655554443
No 499
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=36.90 E-value=1e+02 Score=19.07 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHhHHHHHcCcHHHHHHHHHHH
Q 046569 62 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKA 96 (202)
Q Consensus 62 ~~~~~~~~a~~~~~~g~~~~~~~~~~~A~~~y~~a 96 (202)
...+....+..+.+-|..++.+|++..|+..+.=+
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa 61 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYA 61 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56667788889999999999999998888876543
No 500
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.44 E-value=90 Score=27.87 Aligned_cols=50 Identities=22% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHhcCHHHHHHHHHHHhhhCCCChHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 046569 111 CKLKLEDYSEASSLCTKVLELEPLNVKALFRRSQAYLKTSELEKDEADIKRALTI 165 (202)
Q Consensus 111 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~l 165 (202)
+.+++|+++.|.+...++ ++..-|-.+|.+....+++..|.+||.++.++
T Consensus 646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Done!