BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046570
         (255 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
 pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
          Length = 159

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 78/106 (73%)

Query: 7   NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRP 66
           N + IKG W+ +ED  +IKLV+++GP+ WS+I+  + GR GK CR RW N L+P V+   
Sbjct: 53  NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS 112

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           +T  ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158


>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
          Length = 105

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 76/102 (74%)

Query: 11  IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPA 70
           IKG W+ +ED  +IKLV+++GP+ WS+I+  + GR GK CR RW N L+P V+   +T  
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62

Query: 71  EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104


>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
           Dna- Binding Domain With Cooperative Recognition Helices
 pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
           Dna- Binding Domain With Cooperative Recognition Helices
          Length = 105

 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/102 (58%), Positives = 76/102 (74%)

Query: 11  IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPA 70
           IKG W+ +ED  +IKLV+++GP+ WS+I+  + GR GK CR RW N L+P V+   +T  
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62

Query: 71  EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104


>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
           Nmr, 32 Structures
          Length = 110

 Score =  127 bits (320), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 77/104 (74%)

Query: 9   DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
           D +KG W+ +ED  +I+LV+++G + W++I+  + GR GK CR RW N L+P V+   +T
Sbjct: 4   DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWT 63

Query: 69  PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
             ED II +AH V GN+WA IA+ LPGRTDNA+KNHWNST++RK
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107



 Score = 26.9 bits (58), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 4   NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTV 62
           N  N +  K SW+ +ED  + +  +  G R W+ I+  +PGR+  + +  W + +   V
Sbjct: 51  NHLNPEVKKSSWTEEEDRIIFEAHKVLGNR-WAEIAKLLPGRTDNAVKNHWNSTIKRKV 108


>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
          Length = 128

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 73/101 (72%)

Query: 12  KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAE 71
           KG W+ +ED  +I+ V+++GP+ WS I+  + GR GK CR RW N L+P V+   +T  E
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86

Query: 72  DSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           D II QAH   GN+WA IA+ LPGRTDNA+KNHWNST+RRK
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127


>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
           Domain Bound To A Promoter Sequence Reveals A Unique C-
           Terminal Beta-Hairpin Conformation
 pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
           Domain Bound To A Promoter Sequence Reveals A Unique C-
           Terminal Beta-Hairpin Conformation
 pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
           Domain Bound To A Promoter Sequence Reveals A Unique C-
           Terminal Beta-Hairpin Conformation
 pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
           Domain Bound To A Promoter Sequence Reveals A Unique C-
           Terminal Beta-Hairpin Conformation
          Length = 131

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 68/102 (66%)

Query: 11  IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPA 70
           +KG ++  ED  + + V+++GP+NW  I+S +P RS K CR RW N L P V    +TP 
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 71  EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           ED  I + +   G+KW+ IA+ +PGRTDNAIKN WNS++ ++
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102


>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
           Myb2 In Complex With Mre-2f-13 Dna
 pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
           Myb2 In Complex With Mre-2f-13 Dna
 pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
           Myb2 In Complex With Mre-1-12 Dna
 pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
           Myb2 In Complex With Mre-1-12 Dna
          Length = 126

 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 1/94 (1%)

Query: 12  KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAE 71
           K  ++P+ED  L + V QHG  +W MI++  P R+ + CR RW N L+P++ H P+T  E
Sbjct: 11  KQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69

Query: 72  DSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHW 105
           D++++Q    +G +WA IA+  PGRTD  IKN W
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103



 Score = 37.7 bits (86), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTL 109
           FTP ED ++ +A A HG+ W  IA + P R     ++ W + L
Sbjct: 14  FTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56


>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
           Myb1 Protein From Protozoan Parasite Trichomonas
           Vaginalis
 pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
           From Protozoan Parasite Trichomonas Vaginalis In Complex
           With Mre-1MRE-2r Dna
          Length = 107

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 59/94 (62%)

Query: 12  KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAE 71
           K  ++ +ED  L +LV ++G ++W  IS  +  R+ + CR RW N ++P ++  P++P E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 72  DSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHW 105
           D ++ Q +A +G KW  I++ L  R+DN I+N W
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94


>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
 pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
          Length = 53

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 39/51 (76%)

Query: 62  VQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           V+   +T  ED II QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51



 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTV 62
          K SW+ +ED  + +  ++ G R W+ I+  +PGR+  + +  W + +   V
Sbjct: 3  KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 52


>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
           Average Structure
 pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
          Length = 54

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 39/51 (76%)

Query: 62  VQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112
           V+   +T  ED I+ QAH   GN+WA IA+ LPGRTDNAIKNHWNST+RRK
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53



 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTV 62
          K SW+ +ED  L +  ++ G R W+ I+  +PGR+  + +  W + +   V
Sbjct: 5  KTSWTEEEDRILYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 54


>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
          Length = 52

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 37/50 (74%)

Query: 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          IKG W+ +ED  LIKLV+++GP+ WS+I+  + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51



 Score = 27.7 bits (60), Expect = 5.7,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 66  PFTPAEDSIIIQAHAVHGNK-WATIARSLPGRTDNAIKNHWNSTL 109
           P+T  ED  +I+    +G K W+ IA+ L GR     +  W++ L
Sbjct: 5   PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49


>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
          Length = 52

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query: 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          IKG W+ +ED  +IKLV+++GP+ WS+I+  + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51



 Score = 28.1 bits (61), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 66  PFTPAEDSIIIQAHAVHGNK-WATIARSLPGRTDNAIKNHWNSTL 109
           P+T  ED  +I+    +G K W+ IA+ L GR     +  W++ L
Sbjct: 5   PWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49


>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
 pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
          Length = 53

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 37/50 (74%)

Query: 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          IKG W+ +ED  +I+LV+++GP+ WS+I+  + GR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51



 Score = 28.5 bits (62), Expect = 4.2,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 66  PFTPAEDSIIIQAHAVHGNK-WATIARSLPGRTDNAIKNHWNSTL 109
           P+T  ED  +I+    +G K W+ IA+ L GR     +  W++ L
Sbjct: 5   PWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49


>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
 pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
          Length = 53

 Score = 43.9 bits (102), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          K  W+ +ED  L KLVEQ+G  +W +I++ +P R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51


>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
          Length = 52

 Score = 43.9 bits (102), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60
          K  W+ +ED  L KLVEQ+G  +W +I++ +P R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51


>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
          Domain In Mouse Cdna
          Length = 60

 Score = 40.8 bits (94), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS 59
          K  W+ +ED  L  LV Q G ++W  ++S  P R+ + C+ RW   LS
Sbjct: 8  KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55


>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
          Human Cell Division Cycle 5-Like Protein
          Length = 70

 Score = 37.4 bits (85), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 28/54 (51%)

Query: 15 WSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFT 68
          W   ED  L   V ++G   WS I+S +  +S K C+ RW   L P+++   ++
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65


>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
           Transcription Factor From Antirrhinum Majus
          Length = 93

 Score = 33.1 bits (74), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)

Query: 65  RPFTPAEDSIIIQAHAVHG----NKWATIARSLPGRTDNAIKNHW 105
           RP++  E+    +A AV+     ++WA +AR++ GRT   +K H+
Sbjct: 9   RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53


>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
           Of The Human Cyclin-D-Binding Transcription Factor 1
           (Hdmp1), Northeast Structural Genomics Consortium (Nesg)
           Target Id Hr8011a
          Length = 73

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 67  FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKN 103
           +TP E   + +    HGN WATI  +L GR+ +++K+
Sbjct: 26  YTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKD 61


>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human
          Dnajc2, Northeast Structural Genomics Consortium Target
          Hr8254a
          Length = 73

 Score = 28.5 bits (62), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 15 WSPQEDATL---IKLVEQHGPRNWSMISSGIPGRSGKSCRLRW 54
          W+ +E   L   +K    + P  W  I+  +PGR+ K C  R+
Sbjct: 6  WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRY 48


>pdb|1XDO|A Chain A, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
 pdb|1XDO|B Chain B, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
 pdb|1XDP|A Chain A, Crystal Structure Of The E.Coli Polyphosphate Kinase In
           Complex With Amppnp
 pdb|1XDP|B Chain B, Crystal Structure Of The E.Coli Polyphosphate Kinase In
           Complex With Amppnp
          Length = 687

 Score = 27.7 bits (60), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 70  AEDSIIIQA--HAVHGNKWATIARSLPGRTDNAIKNHWNSTL 109
           A+DS II +  HA H  K  T+   L  R D     HW   L
Sbjct: 376 AKDSRIIDSMIHAAHNGKKVTVVVELQARFDEEANIHWAKRL 417


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,849,447
Number of Sequences: 62578
Number of extensions: 240233
Number of successful extensions: 833
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 41
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)