Query 046570
Match_columns 255
No_of_seqs 190 out of 1418
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 13:28:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0048 Transcription factor, 100.0 2.5E-32 5.4E-37 243.5 10.4 110 8-117 5-115 (238)
2 PLN03212 Transcription repress 100.0 6.6E-32 1.4E-36 239.0 12.5 110 7-116 20-130 (249)
3 PLN03091 hypothetical protein; 100.0 4.4E-30 9.5E-35 242.3 12.9 111 6-116 8-119 (459)
4 KOG0049 Transcription factor, 99.8 1.1E-19 2.3E-24 177.5 6.8 106 1-106 349-458 (939)
5 KOG0049 Transcription factor, 99.7 3.4E-17 7.5E-22 160.1 8.1 103 11-113 304-410 (939)
6 PF13921 Myb_DNA-bind_6: Myb-l 99.7 5.9E-17 1.3E-21 114.7 3.7 60 15-75 1-60 (60)
7 KOG0050 mRNA splicing protein 99.6 8.5E-17 1.8E-21 154.1 4.7 145 10-157 5-149 (617)
8 COG5147 REB1 Myb superfamily p 99.6 2.1E-15 4.5E-20 146.6 6.2 107 8-114 16-122 (512)
9 PF00249 Myb_DNA-binding: Myb- 99.4 1.4E-14 3.1E-19 98.5 0.6 47 12-58 1-48 (48)
10 KOG0051 RNA polymerase I termi 99.4 1.8E-13 3.9E-18 134.6 5.9 101 11-113 383-511 (607)
11 PF00249 Myb_DNA-binding: Myb- 99.4 3E-13 6.6E-18 91.9 4.3 46 64-109 1-48 (48)
12 PLN03212 Transcription repress 99.2 1.2E-12 2.6E-17 116.6 -0.4 59 2-61 68-126 (249)
13 smart00717 SANT SANT SWI3, AD 99.2 2.2E-11 4.8E-16 80.6 4.9 47 64-110 1-48 (49)
14 PF13921 Myb_DNA-bind_6: Myb-l 99.2 1.4E-11 3E-16 87.0 3.8 45 67-111 1-45 (60)
15 smart00717 SANT SANT SWI3, AD 99.2 1.5E-11 3.3E-16 81.4 2.9 48 12-59 1-48 (49)
16 PLN03091 hypothetical protein; 99.1 9.2E-12 2E-16 118.6 0.2 58 2-60 57-114 (459)
17 cd00167 SANT 'SWI3, ADA2, N-Co 99.1 1.9E-10 4.2E-15 75.0 4.9 44 66-109 1-45 (45)
18 cd00167 SANT 'SWI3, ADA2, N-Co 99.0 1.5E-10 3.2E-15 75.5 2.6 44 14-57 1-44 (45)
19 KOG0048 Transcription factor, 99.0 1.4E-10 3.1E-15 103.6 2.7 55 3-58 53-107 (238)
20 KOG0051 RNA polymerase I termi 98.9 7.8E-10 1.7E-14 109.2 3.6 114 10-124 306-443 (607)
21 COG5147 REB1 Myb superfamily p 98.4 2.2E-07 4.8E-12 91.1 3.1 105 4-110 64-168 (512)
22 TIGR01557 myb_SHAQKYF myb-like 97.9 1.8E-05 3.9E-10 56.0 5.0 47 64-110 3-55 (57)
23 KOG0457 Histone acetyltransfer 97.9 6.7E-06 1.4E-10 78.6 2.2 51 8-58 68-118 (438)
24 PF13325 MCRS_N: N-terminal re 97.7 0.00012 2.6E-09 64.1 7.9 101 14-116 1-133 (199)
25 KOG0457 Histone acetyltransfer 97.6 8E-05 1.7E-09 71.4 5.5 50 62-111 70-120 (438)
26 TIGR01557 myb_SHAQKYF myb-like 97.6 4.2E-05 9.2E-10 54.1 2.6 48 11-58 2-54 (57)
27 KOG0050 mRNA splicing protein 97.3 0.00021 4.6E-09 69.8 3.8 53 62-114 5-58 (617)
28 COG5259 RSC8 RSC chromatin rem 97.2 0.00017 3.7E-09 69.7 2.1 46 11-57 278-323 (531)
29 KOG1279 Chromatin remodeling f 97.1 0.00035 7.5E-09 68.9 3.2 48 8-56 249-296 (506)
30 COG5259 RSC8 RSC chromatin rem 97.1 0.00047 1E-08 66.8 3.6 45 64-108 279-323 (531)
31 KOG1279 Chromatin remodeling f 96.9 0.001 2.2E-08 65.7 4.7 46 63-108 252-297 (506)
32 TIGR02894 DNA_bind_RsfA transc 96.9 0.0014 3.1E-08 55.4 4.4 54 63-117 3-63 (161)
33 PF13837 Myb_DNA-bind_4: Myb/S 96.8 0.00079 1.7E-08 50.5 2.4 50 65-114 2-69 (90)
34 PF08914 Myb_DNA-bind_2: Rap1 96.6 0.0032 6.9E-08 45.7 3.9 50 64-113 2-61 (65)
35 TIGR02894 DNA_bind_RsfA transc 96.4 0.0013 2.9E-08 55.6 1.1 50 10-60 2-57 (161)
36 PF08914 Myb_DNA-bind_2: Rap1 95.9 0.0027 5.9E-08 46.1 0.7 51 12-62 2-61 (65)
37 COG5114 Histone acetyltransfer 95.8 0.009 1.9E-07 55.8 3.8 47 64-110 63-110 (432)
38 PF13837 Myb_DNA-bind_4: Myb/S 95.8 0.0021 4.5E-08 48.1 -0.3 46 12-57 1-63 (90)
39 COG5114 Histone acetyltransfer 95.7 0.003 6.4E-08 58.9 0.1 48 12-59 63-110 (432)
40 PRK13923 putative spore coat p 95.6 0.013 2.8E-07 50.2 3.8 53 63-116 4-63 (170)
41 PF13873 Myb_DNA-bind_5: Myb/S 95.5 0.028 6.2E-07 41.2 4.8 50 64-113 2-73 (78)
42 PLN03142 Probable chromatin-re 95.2 0.04 8.7E-07 59.0 6.5 100 13-112 825-987 (1033)
43 PF13873 Myb_DNA-bind_5: Myb/S 95.0 0.014 2.9E-07 42.9 1.7 48 11-58 1-69 (78)
44 PRK13923 putative spore coat p 94.2 0.012 2.6E-07 50.5 -0.3 49 10-59 3-57 (170)
45 KOG2656 DNA methyltransferase 94.0 0.1 2.2E-06 50.0 5.5 82 34-115 75-187 (445)
46 COG5118 BDP1 Transcription ini 92.0 0.13 2.8E-06 49.2 3.0 49 7-56 360-408 (507)
47 KOG4282 Transcription factor G 91.8 0.35 7.7E-06 45.3 5.7 54 64-117 54-121 (345)
48 COG5118 BDP1 Transcription ini 91.5 0.23 5.1E-06 47.5 4.2 47 65-111 366-412 (507)
49 PF09111 SLIDE: SLIDE; InterP 91.2 0.3 6.5E-06 39.5 4.0 51 61-111 46-112 (118)
50 PF12776 Myb_DNA-bind_3: Myb/S 89.0 0.86 1.9E-05 34.2 4.7 48 66-113 1-66 (96)
51 PF09111 SLIDE: SLIDE; InterP 87.5 0.17 3.7E-06 40.9 0.0 48 8-55 45-107 (118)
52 KOG4167 Predicted DNA-binding 85.5 0.41 8.8E-06 49.3 1.4 44 12-56 619-662 (907)
53 PF11626 Rap1_C: TRF2-interact 84.7 0.84 1.8E-05 34.6 2.6 29 8-39 43-79 (87)
54 PF08281 Sigma70_r4_2: Sigma-7 84.0 2.3 5.1E-05 28.5 4.4 41 69-110 12-52 (54)
55 KOG1194 Predicted DNA-binding 82.3 2.3 5E-05 41.8 5.0 49 64-112 187-235 (534)
56 smart00595 MADF subfamily of S 75.6 4.6 9.9E-05 29.9 3.9 27 85-112 29-55 (89)
57 KOG4282 Transcription factor G 75.2 1.4 3E-05 41.3 1.2 46 13-58 55-113 (345)
58 KOG4468 Polycomb-group transcr 74.0 5.6 0.00012 40.5 5.0 49 64-112 88-146 (782)
59 PF13404 HTH_AsnC-type: AsnC-t 73.9 5.8 0.00013 26.0 3.6 38 70-108 3-41 (42)
60 PF12776 Myb_DNA-bind_3: Myb/S 72.9 2 4.3E-05 32.2 1.4 43 14-56 1-60 (96)
61 KOG1194 Predicted DNA-binding 69.3 3.1 6.7E-05 40.9 2.1 45 11-56 186-230 (534)
62 KOG4167 Predicted DNA-binding 69.0 7.3 0.00016 40.5 4.7 45 65-109 620-664 (907)
63 PF13325 MCRS_N: N-terminal re 68.6 10 0.00022 33.5 4.9 45 66-111 1-48 (199)
64 KOG4329 DNA-binding protein [G 66.7 4.3 9.4E-05 38.9 2.4 43 13-56 278-321 (445)
65 KOG4468 Polycomb-group transcr 65.6 6.9 0.00015 39.8 3.6 46 12-58 88-143 (782)
66 PRK11179 DNA-binding transcrip 65.1 12 0.00025 30.9 4.5 44 70-114 9-53 (153)
67 KOG2009 Transcription initiati 61.3 6.1 0.00013 40.0 2.5 51 5-56 402-452 (584)
68 KOG2009 Transcription initiati 61.2 11 0.00023 38.3 4.1 48 64-111 409-456 (584)
69 PF04545 Sigma70_r4: Sigma-70, 60.2 18 0.00039 23.8 4.0 42 70-112 7-48 (50)
70 PF01388 ARID: ARID/BRIGHT DNA 59.5 16 0.00035 27.2 4.0 37 74-110 40-89 (92)
71 KOG4329 DNA-binding protein [G 58.8 16 0.00034 35.3 4.6 45 65-109 278-323 (445)
72 PRK11169 leucine-responsive tr 57.3 15 0.00032 30.7 3.8 45 69-114 13-58 (164)
73 TIGR02985 Sig70_bacteroi1 RNA 53.5 28 0.0006 27.6 4.7 36 75-111 121-156 (161)
74 KOG1878 Nuclear receptor coreg 53.1 5.9 0.00013 43.9 0.9 44 11-55 224-267 (1672)
75 PLN03142 Probable chromatin-re 52.8 8.8 0.00019 41.6 2.1 46 9-54 923-980 (1033)
76 smart00501 BRIGHT BRIGHT, ARID 50.9 28 0.0006 26.2 4.1 39 74-112 36-87 (93)
77 PF11035 SnAPC_2_like: Small n 50.4 60 0.0013 30.7 6.9 48 64-111 21-72 (344)
78 PF09197 Rap1-DNA-bind: Rap1, 49.9 7.8 0.00017 30.8 0.9 45 14-58 1-75 (105)
79 KOG0384 Chromodomain-helicase 46.2 21 0.00045 39.4 3.6 75 12-92 1133-1208(1373)
80 PF11626 Rap1_C: TRF2-interact 45.8 7.1 0.00015 29.5 0.1 17 60-76 43-59 (87)
81 PF10545 MADF_DNA_bdg: Alcohol 43.1 28 0.00061 24.8 3.0 28 85-112 28-56 (85)
82 PF04504 DUF573: Protein of un 42.6 48 0.001 25.7 4.3 51 65-115 5-68 (98)
83 TIGR02937 sigma70-ECF RNA poly 41.8 55 0.0012 25.0 4.7 34 77-111 120-153 (158)
84 KOG3554 Histone deacetylase co 41.0 75 0.0016 31.8 6.2 63 36-108 267-330 (693)
85 PF07750 GcrA: GcrA cell cycle 40.8 27 0.00058 29.6 2.8 41 66-107 2-42 (162)
86 PRK11179 DNA-binding transcrip 40.6 11 0.00024 31.0 0.5 43 18-61 9-51 (153)
87 PRK11169 leucine-responsive tr 38.8 8 0.00017 32.3 -0.6 45 17-62 13-57 (164)
88 smart00344 HTH_ASNC helix_turn 36.4 69 0.0015 24.2 4.4 44 70-114 3-47 (108)
89 PF09420 Nop16: Ribosome bioge 35.8 31 0.00068 29.0 2.5 45 10-55 112-160 (164)
90 PRK09652 RNA polymerase sigma 35.4 81 0.0018 25.4 4.9 30 81-111 142-171 (182)
91 cd06171 Sigma70_r4 Sigma70, re 34.7 97 0.0021 19.2 4.3 40 67-108 11-50 (55)
92 cd08319 Death_RAIDD Death doma 33.5 43 0.00092 25.3 2.7 28 72-100 2-29 (83)
93 PF13340 DUF4096: Putative tra 32.4 36 0.00079 24.6 2.1 60 34-111 5-67 (75)
94 PF02954 HTH_8: Bacterial regu 32.3 69 0.0015 20.5 3.2 34 71-105 6-39 (42)
95 KOG3841 TEF-1 and related tran 32.2 80 0.0017 30.7 4.8 53 63-115 75-148 (455)
96 PRK11924 RNA polymerase sigma 32.1 81 0.0017 25.4 4.4 30 81-111 139-168 (179)
97 cd08803 Death_ank3 Death domai 32.1 61 0.0013 24.4 3.3 28 72-100 4-31 (84)
98 PRK09643 RNA polymerase sigma 31.9 1E+02 0.0022 26.0 5.0 30 81-111 148-177 (192)
99 PF11035 SnAPC_2_like: Small n 31.5 1.4E+02 0.003 28.4 6.1 93 5-110 14-127 (344)
100 KOG2656 DNA methyltransferase 31.2 21 0.00045 34.7 0.7 47 9-56 127-179 (445)
101 KOG3554 Histone deacetylase co 31.0 24 0.00051 35.2 1.1 40 14-54 287-327 (693)
102 PF11427 HTH_Tnp_Tc3_1: Tc3 tr 30.7 76 0.0016 21.8 3.3 34 71-105 8-41 (50)
103 PF07750 GcrA: GcrA cell cycle 28.8 41 0.00089 28.5 2.1 40 14-55 2-41 (162)
104 PF07638 Sigma70_ECF: ECF sigm 28.6 1.3E+02 0.0028 25.4 5.1 36 73-109 141-176 (185)
105 PF09905 DUF2132: Uncharacteri 28.1 42 0.0009 24.3 1.7 23 20-45 12-34 (64)
106 PRK09641 RNA polymerase sigma 28.0 1E+02 0.0022 25.3 4.4 29 82-111 151-179 (187)
107 TIGR02943 Sig70_famx1 RNA poly 27.8 1.5E+02 0.0034 24.7 5.5 31 81-112 145-175 (188)
108 cd08317 Death_ank Death domain 27.2 59 0.0013 24.0 2.5 28 72-100 4-31 (84)
109 PRK09047 RNA polymerase factor 27.2 1.2E+02 0.0027 24.1 4.7 30 82-112 121-150 (161)
110 PRK12523 RNA polymerase sigma 27.1 1.7E+02 0.0038 23.8 5.6 32 80-112 132-163 (172)
111 PRK12532 RNA polymerase sigma 26.9 1.7E+02 0.0037 24.4 5.6 29 82-111 151-179 (195)
112 PRK04217 hypothetical protein; 26.5 1.4E+02 0.0029 23.8 4.5 45 65-111 41-85 (110)
113 PLN03162 golden-2 like transcr 26.4 3.9E+02 0.0084 26.1 8.3 46 64-109 237-287 (526)
114 PRK09637 RNA polymerase sigma 26.2 1.2E+02 0.0026 25.3 4.5 29 82-111 121-149 (181)
115 PRK12531 RNA polymerase sigma 25.8 1.3E+02 0.0028 25.2 4.7 30 82-112 156-185 (194)
116 COG1522 Lrp Transcriptional re 25.6 1.2E+02 0.0026 24.2 4.3 45 70-115 8-53 (154)
117 TIGR02939 RpoE_Sigma70 RNA pol 25.5 96 0.0021 25.5 3.8 29 82-111 153-181 (190)
118 PRK12529 RNA polymerase sigma 25.2 1.7E+02 0.0037 24.2 5.2 32 81-113 141-172 (178)
119 PRK12524 RNA polymerase sigma 24.7 1.4E+02 0.0029 25.1 4.6 31 81-112 150-180 (196)
120 PRK09642 RNA polymerase sigma 24.3 1.5E+02 0.0032 23.7 4.6 29 82-111 121-149 (160)
121 TIGR02954 Sig70_famx3 RNA poly 23.9 1.4E+02 0.003 24.2 4.4 29 82-111 134-162 (169)
122 TIGR02948 SigW_bacill RNA poly 23.7 1.3E+02 0.0028 24.7 4.2 29 82-111 151-179 (187)
123 PRK12515 RNA polymerase sigma 23.7 1.5E+02 0.0033 24.6 4.7 29 82-111 146-174 (189)
124 PRK12512 RNA polymerase sigma 23.6 1.5E+02 0.0033 24.4 4.6 29 82-111 146-174 (184)
125 PRK09648 RNA polymerase sigma 23.5 1.5E+02 0.0033 24.5 4.7 29 82-111 154-182 (189)
126 PRK11923 algU RNA polymerase s 23.0 1.4E+02 0.003 24.8 4.3 29 82-111 153-181 (193)
127 PRK12530 RNA polymerase sigma 22.9 1.5E+02 0.0033 24.7 4.6 28 82-110 149-176 (189)
128 PRK05602 RNA polymerase sigma 22.6 2.3E+02 0.005 23.3 5.6 29 82-111 143-171 (186)
129 PRK09645 RNA polymerase sigma 22.6 1.6E+02 0.0036 23.8 4.6 29 82-111 133-161 (173)
130 PF09420 Nop16: Ribosome bioge 22.0 1.7E+02 0.0037 24.5 4.7 45 64-108 114-162 (164)
131 PRK12536 RNA polymerase sigma 21.4 2.1E+02 0.0046 23.5 5.1 30 81-111 143-172 (181)
132 PRK06759 RNA polymerase factor 20.7 2E+02 0.0043 22.7 4.6 29 82-111 121-149 (154)
133 PF13936 HTH_38: Helix-turn-he 20.6 89 0.0019 20.3 2.1 36 66-103 4-39 (44)
134 PRK00118 putative DNA-binding 20.5 2.1E+02 0.0046 22.5 4.5 41 69-110 19-59 (104)
135 PRK12528 RNA polymerase sigma 20.4 2E+02 0.0044 23.0 4.7 30 81-111 127-156 (161)
136 PRK09651 RNA polymerase sigma 20.4 1.9E+02 0.004 23.7 4.5 32 82-114 134-165 (172)
137 cd08804 Death_ank2 Death domai 20.3 1.1E+02 0.0024 22.8 2.8 31 72-103 4-34 (84)
138 TIGR02952 Sig70_famx2 RNA poly 20.2 1.9E+02 0.0042 23.1 4.5 29 82-111 137-165 (170)
139 PRK12547 RNA polymerase sigma 20.0 2.1E+02 0.0045 23.1 4.7 30 81-111 126-155 (164)
No 1
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.97 E-value=2.5e-32 Score=243.55 Aligned_cols=110 Identities=42% Similarity=0.796 Sum_probs=104.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCC-CCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCch
Q 046570 8 NDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKW 86 (255)
Q Consensus 8 ~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp-gRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W 86 (255)
+...||+||+|||.+|+.+|.+||+++|..||+.++ +|++++||.||.|||+|.++++.||+|||.+|++++..||++|
T Consensus 5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW 84 (238)
T KOG0048|consen 5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW 84 (238)
T ss_pred ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence 345579999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHHhHHHhhh
Q 046570 87 ATIARSLPGRTDNAIKNHWNSTLRRKRMAEL 117 (255)
Q Consensus 87 ~~IA~~~pgRT~~qcknRw~~llr~k~~~~~ 117 (255)
+.||++|||||++.|||+|+..+++++....
T Consensus 85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999877644
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.97 E-value=6.6e-32 Score=239.02 Aligned_cols=110 Identities=39% Similarity=0.800 Sum_probs=105.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCC-CCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCc
Q 046570 7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGI-PGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNK 85 (255)
Q Consensus 7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l-pgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~ 85 (255)
.+.+++++||+|||++|+++|++||..+|..||..+ ++|+++|||+||.++|+|.+++++||++||++|++++..||++
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnK 99 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNR 99 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcccc
Confidence 367899999999999999999999998999999988 6999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCHHHHHHHHHHHHHhHHHhh
Q 046570 86 WATIARSLPGRTDNAIKNHWNSTLRRKRMAE 116 (255)
Q Consensus 86 W~~IA~~~pgRT~~qcknRw~~llr~k~~~~ 116 (255)
|..||++|||||+++|||||+.++++++...
T Consensus 100 Ws~IAk~LpGRTDnqIKNRWns~LrK~l~r~ 130 (249)
T PLN03212 100 WSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130 (249)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhHHHHhc
Confidence 9999999999999999999999999887653
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.97 E-value=4.4e-30 Score=242.29 Aligned_cols=111 Identities=45% Similarity=0.834 Sum_probs=105.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCC-CCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCC
Q 046570 6 NNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGI-PGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGN 84 (255)
Q Consensus 6 l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l-pgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~ 84 (255)
....++||+||++||++|+++|.+||..+|..||+.+ ++|+++|||+||.++|+|.+++++||++||++|++++++||+
T Consensus 8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn 87 (459)
T PLN03091 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN 87 (459)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence 4568899999999999999999999999999999988 599999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCCCHHHHHHHHHHHHHhHHHhh
Q 046570 85 KWATIARSLPGRTDNAIKNHWNSTLRRKRMAE 116 (255)
Q Consensus 85 ~W~~IA~~~pgRT~~qcknRw~~llr~k~~~~ 116 (255)
+|.+||++|||||+++||+||+.++++++...
T Consensus 88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~~ 119 (459)
T PLN03091 88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119 (459)
T ss_pred chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999886643
No 4
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.79 E-value=1.1e-19 Score=177.53 Aligned_cols=106 Identities=28% Similarity=0.499 Sum_probs=98.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHH
Q 046570 1 TNSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHA 80 (255)
Q Consensus 1 ~~sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~ 80 (255)
+++-+|+|.+++|+||++||.+|..+|.+||..+|.+|-..+|||+..|||+||.|.|+...+++.||-.||+.|+.+|.
T Consensus 349 R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~ 428 (939)
T KOG0049|consen 349 RFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVK 428 (939)
T ss_pred hheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcC-CchhhhhccCCCCCHH---HHHHHHH
Q 046570 81 VHG-NKWATIARSLPGRTDN---AIKNHWN 106 (255)
Q Consensus 81 ~~G-~~W~~IA~~~pgRT~~---qcknRw~ 106 (255)
+|| ++|.+||.++|.||.. .||.|+.
T Consensus 429 ~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~ 458 (939)
T KOG0049|consen 429 VYGKGNWAKCAMLLPKKTSRQLRRRRLRLI 458 (939)
T ss_pred HHccchHHHHHHHccccchhHHHHHHHHHH
Confidence 999 7899999999999994 4555543
No 5
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.69 E-value=3.4e-17 Score=160.12 Aligned_cols=103 Identities=29% Similarity=0.594 Sum_probs=95.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCc-h
Q 046570 11 IKGSWSPQEDATLIKLVEQHGP---RNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNK-W 86 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G~---~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~-W 86 (255)
....||+|||.+|+.+|..... .+|.+|-.+||||+..|...||.+.|+|++++|+||++||.+|+.+|.+||.+ |
T Consensus 304 ~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw 383 (939)
T KOG0049|consen 304 SEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDW 383 (939)
T ss_pred HhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccch
Confidence 4578999999999999987743 36999999999999999999999999999999999999999999999999965 9
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHHhHH
Q 046570 87 ATIARSLPGRTDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 87 ~~IA~~~pgRT~~qcknRw~~llr~k~ 113 (255)
.+|-..||||++.|||.||.+.|.+..
T Consensus 384 ~k~R~~vPnRSdsQcR~RY~nvL~~s~ 410 (939)
T KOG0049|consen 384 AKVRQAVPNRSDSQCRERYTNVLNRSA 410 (939)
T ss_pred hhHHHhcCCccHHHHHHHHHHHHHHhh
Confidence 999999999999999999999987753
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.66 E-value=5.9e-17 Score=114.69 Aligned_cols=60 Identities=37% Similarity=0.814 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHH
Q 046570 15 WSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSII 75 (255)
Q Consensus 15 WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~L 75 (255)
||++||.+|+.+|..|| .+|..||.+|+.||+.||+.||.++|.|.+++++||++||.+|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 6899999999779999999999999999999999999999987
No 7
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=8.5e-17 Score=154.15 Aligned_cols=145 Identities=22% Similarity=0.378 Sum_probs=121.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhhh
Q 046570 10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATI 89 (255)
Q Consensus 10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~I 89 (255)
++.|.|+.-||+.|..+|.+||.+.|++|+..++-.+++||+.||..+|+|.+++..|+.+||.+||.+.+.+...|..|
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI 84 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI 84 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCHHHHHHHHHHHHHhHHHhhhhcCCcCCCcccccCCCCCCCCCCCCCCCCCCCCccccccc
Q 046570 90 ARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSESNSVMMKRPGFENNISSAESDSDSGGIKRQCLRV 157 (255)
Q Consensus 90 A~~~pgRT~~qcknRw~~llr~k~~~~~~~~~~~~~~~~~~~~~~~~~iss~~~ds~s~~~~~q~~~~ 157 (255)
+..| ||+++||-.||..++-..........+-.... ...+.++++.......+++.++...|...
T Consensus 85 a~i~-gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~r--Lk~gE~ePn~e~~~aRpd~~dmdEde~eM 149 (617)
T KOG0050|consen 85 ADIM-GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAK--LKEGEIEPNQETNPARPDGFDMDEDEGEM 149 (617)
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHHhhhcccccccccc--cCCCcCCCccccccccCCcccchHHHHHH
Confidence 9999 99999999999999987766554422221111 34455555555566677777766665553
No 8
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.57 E-value=2.1e-15 Score=146.63 Aligned_cols=107 Identities=32% Similarity=0.560 Sum_probs=101.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchh
Q 046570 8 NDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWA 87 (255)
Q Consensus 8 ~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~ 87 (255)
-.++.|.|+..||+.|..+|..||+++|..||..+..+++.||+.||.++++|.+++..|+.+||..|+.+..++|+.|+
T Consensus 16 ~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~ws 95 (512)
T COG5147 16 TKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWS 95 (512)
T ss_pred ceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhh
Confidence 46788999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570 88 TIARSLPGRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 88 ~IA~~~pgRT~~qcknRw~~llr~k~~ 114 (255)
.||..+++|+..+|.+||...+.....
T Consensus 96 tia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 96 TIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred hhccccCccchHHHHHHHHHHhhhhhc
Confidence 999999999999999999988776543
No 9
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.45 E-value=1.4e-14 Score=98.48 Aligned_cols=47 Identities=40% Similarity=0.892 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhccCCC-CCCcccccccccccC
Q 046570 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQL 58 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp-gRt~~qCr~Rw~~~L 58 (255)
||+||++||++|+++|.+||..+|..||..|| +||+.||+.||.++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999777999999999 999999999998764
No 10
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.41 E-value=1.8e-13 Score=134.61 Aligned_cols=101 Identities=23% Similarity=0.520 Sum_probs=92.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCc--cCCCCChhhHHHHHHHHH-------H
Q 046570 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTV--QHRPFTPAEDSIIIQAHA-------V 81 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l--~k~~WT~eED~~Ll~~v~-------~ 81 (255)
.+|+||++|++.|..+|..|| +.|..|+..| ||.+..|++||+++...+- +++.||.+|.+.|+++|. +
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q 460 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ 460 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999 7899999998 7999999999999999885 889999999999999995 3
Q ss_pred c-------------------CCchhhhhccCCCCCHHHHHHHHHHHHHhHH
Q 046570 82 H-------------------GNKWATIARSLPGRTDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 82 ~-------------------G~~W~~IA~~~pgRT~~qcknRw~~llr~k~ 113 (255)
+ +-.|..|+..+++|+..||+.+|..++....
T Consensus 461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s 511 (607)
T KOG0051|consen 461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPS 511 (607)
T ss_pred ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHH
Confidence 3 1269999999999999999999999887653
No 11
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.39 E-value=3e-13 Score=91.91 Aligned_cols=46 Identities=30% Similarity=0.647 Sum_probs=41.8
Q ss_pred CCCCChhhHHHHHHHHHHcCCc-hhhhhccCC-CCCHHHHHHHHHHHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGNK-WATIARSLP-GRTDNAIKNHWNSTL 109 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~~-W~~IA~~~p-gRT~~qcknRw~~ll 109 (255)
+++||++||++|++++.+||.. |..||..|| +||..||++||+.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999988 999999999 999999999998864
No 12
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.23 E-value=1.2e-12 Score=116.63 Aligned_cols=59 Identities=24% Similarity=0.469 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCC
Q 046570 2 NSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT 61 (255)
Q Consensus 2 ~sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~ 61 (255)
..|+|+|.+++|+||++||++|++++..|| ..|..||..|||||..+|+.||..+|++.
T Consensus 68 W~N~L~P~I~kgpWT~EED~lLlel~~~~G-nKWs~IAk~LpGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 68 WMNYLRPSVKRGGITSDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred HHHhhchhcccCCCChHHHHHHHHHHHhcc-ccHHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence 357899999999999999999999999999 67999999999999999999998877644
No 13
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.20 E-value=2.2e-11 Score=80.60 Aligned_cols=47 Identities=36% Similarity=0.745 Sum_probs=44.2
Q ss_pred CCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
+++||++|+.+|+.++..|| .+|..||..||+||+.+|++||..+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999 999999999999999999999998764
No 14
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.19 E-value=1.4e-11 Score=87.00 Aligned_cols=45 Identities=33% Similarity=0.643 Sum_probs=39.1
Q ss_pred CChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 67 FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 67 WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
||++||.+|+++|..||++|..||..|+.||+.+|++||...|+.
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~ 45 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRP 45 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence 999999999999999999999999999779999999999996653
No 15
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.17 E-value=1.5e-11 Score=81.39 Aligned_cols=48 Identities=46% Similarity=0.974 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCC
Q 046570 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS 59 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~ 59 (255)
+++||++||.+|+.++..||..+|..||..|++||+.+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 478999999999999999997789999999999999999999987664
No 16
>PLN03091 hypothetical protein; Provisional
Probab=99.12 E-value=9.2e-12 Score=118.59 Aligned_cols=58 Identities=29% Similarity=0.499 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCC
Q 046570 2 NSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60 (255)
Q Consensus 2 ~sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p 60 (255)
.-|+|+|.+++|+||++||.+|++++.+|| ..|..||..|||||..+|+.||...|++
T Consensus 57 W~NyLdP~IkKgpWT~EED~lLLeL~k~~G-nKWskIAk~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 57 WINYLRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred HHhccCCcccCCCCCHHHHHHHHHHHHHhC-cchHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999 5799999999999999999999876654
No 17
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.08 E-value=1.9e-10 Score=74.96 Aligned_cols=44 Identities=39% Similarity=0.827 Sum_probs=41.7
Q ss_pred CCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHH
Q 046570 66 PFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTL 109 (255)
Q Consensus 66 ~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~ll 109 (255)
+||++|+..|+.++..|| .+|..||..|++||..+|++||..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999 89999999999999999999998753
No 18
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.02 E-value=1.5e-10 Score=75.52 Aligned_cols=44 Identities=41% Similarity=0.907 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc
Q 046570 14 SWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ 57 (255)
Q Consensus 14 ~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~ 57 (255)
+||++|+..|+.++..||..+|..||..|++|++.+|+.||.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 59999999999999999977899999999999999999999765
No 19
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.01 E-value=1.4e-10 Score=103.61 Aligned_cols=55 Identities=31% Similarity=0.631 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccC
Q 046570 3 SNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQL 58 (255)
Q Consensus 3 sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L 58 (255)
.|+|+|++++|.||+|||.+|++|++.+| +.|..||++|||||...++.+|...|
T Consensus 53 ~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G-NrWs~IA~~LPGRTDNeIKN~Wnt~l 107 (238)
T KOG0048|consen 53 TNYLRPDLKRGNFSDEEEDLIIKLHALLG-NRWSLIAGRLPGRTDNEVKNHWNTHL 107 (238)
T ss_pred hcccCCCccCCCCCHHHHHHHHHHHHHHC-cHHHHHHhhCCCcCHHHHHHHHHHHH
Confidence 58999999999999999999999999999 77999999999999999999996655
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.90 E-value=7.8e-10 Score=109.21 Aligned_cols=114 Identities=23% Similarity=0.330 Sum_probs=91.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHh----CCC-------------------ChhhhccCCCCCCcccccccccccCCCCc-cCC
Q 046570 10 RIKGSWSPQEDATLIKLVEQH----GPR-------------------NWSMISSGIPGRSGKSCRLRWCNQLSPTV-QHR 65 (255)
Q Consensus 10 ~~kg~WT~eED~~L~~lv~~~----G~~-------------------~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l-~k~ 65 (255)
++-+.|+.+||..|.+.|..| |-. -|..|...||.|+...++.+-++...|.- .+|
T Consensus 306 ~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg 385 (607)
T KOG0051|consen 306 INLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRG 385 (607)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccC
Confidence 445889999999999999766 111 17788889999999999885444444444 899
Q ss_pred CCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhHHHhhhhcCCcCC
Q 046570 66 PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAELSSASSES 124 (255)
Q Consensus 66 ~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~~~~~~~~~~~~ 124 (255)
.||++|++.|..+|.++|+.|..|+..| ||.+..|+.||+.+++.........|+.+.
T Consensus 386 ~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eE 443 (607)
T KOG0051|consen 386 KWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEE 443 (607)
T ss_pred CCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHH
Confidence 9999999999999999999999999999 999999999999998766434444555443
No 21
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.36 E-value=2.2e-07 Score=91.07 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=91.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcC
Q 046570 4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHG 83 (255)
Q Consensus 4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G 83 (255)
++++|.++++.|+.+||..|+.+...+|+ .|..||..+++|+..+|..||.+.+.+... .+|+.......+-.+..|+
T Consensus 64 ~~lnp~lk~~~~~~eed~~li~l~~~~~~-~wstia~~~d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~f~ 141 (512)
T COG5147 64 NHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKDRRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDPFN 141 (512)
T ss_pred hhhchhcccccccHHHHHHHHHHHHhcCc-hhhhhccccCccchHHHHHHHHHHhhhhhc-cccccccchhhccccCchh
Confidence 57899999999999999999999999996 599999999999999999999999987666 8999999888888888888
Q ss_pred CchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 84 NKWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 84 ~~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
..|.++....-.+-...|.+++..+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~N~~~~~~~ 168 (512)
T COG5147 142 ENSARRPDIYEDELLEREVNREASYRL 168 (512)
T ss_pred hhhhhhhhhhhcccchhhhhHHHHHHH
Confidence 888888777666777777777765543
No 22
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.94 E-value=1.8e-05 Score=56.04 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=41.6
Q ss_pred CCCCChhhHHHHHHHHHHcCC-ch---hhhhccCC-CC-CHHHHHHHHHHHHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGN-KW---ATIARSLP-GR-TDNAIKNHWNSTLR 110 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~-~W---~~IA~~~p-gR-T~~qcknRw~~llr 110 (255)
+-.||++|+.++++++..+|. +| ..|+..|. .| |..||+.|++.+.-
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 457999999999999999996 99 99999886 45 99999999987753
No 23
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.86 E-value=6.7e-06 Score=78.62 Aligned_cols=51 Identities=22% Similarity=0.476 Sum_probs=46.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccC
Q 046570 8 NDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQL 58 (255)
Q Consensus 8 ~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L 58 (255)
-.+-...||++|+-+|++++..||.+||..||.+|..|+..+|+++|.+++
T Consensus 68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 355677899999999999999999999999999999999999999997754
No 24
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=97.74 E-value=0.00012 Score=64.07 Aligned_cols=101 Identities=20% Similarity=0.417 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhccCC---CCCCcccccccccccCC----------------CCc-----cCCCCCh
Q 046570 14 SWSPQEDATLIKLVEQHGPRNWSMISSGI---PGRSGKSCRLRWCNQLS----------------PTV-----QHRPFTP 69 (255)
Q Consensus 14 ~WT~eED~~L~~lv~~~G~~~W~~IA~~l---pgRt~~qCr~Rw~~~L~----------------p~l-----~k~~WT~ 69 (255)
+|++..|-+|+.+|.... +-..|+..+ ..-|...+..||+..|- |.. .+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 699999999999998776 677777766 34677888999987553 222 2579999
Q ss_pred hhHHHHHHHHHHcCC---chhhhhc-----cCCCCCHHHHHHHHHHHHHhHHHhh
Q 046570 70 AEDSIIIQAHAVHGN---KWATIAR-----SLPGRTDNAIKNHWNSTLRRKRMAE 116 (255)
Q Consensus 70 eED~~Ll~~v~~~G~---~W~~IA~-----~~pgRT~~qcknRw~~llr~k~~~~ 116 (255)
+|+++|......... .+.+|-. +.++||+.++..+|..+.+..+...
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~D 133 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPD 133 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhc
Confidence 999999997655543 4777733 3468999999999997777766643
No 25
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.63 E-value=8e-05 Score=71.36 Aligned_cols=50 Identities=20% Similarity=0.442 Sum_probs=45.1
Q ss_pred ccCCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 62 VQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 62 l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
+-...||.+|+-+||+++..|| ++|..||.+++.|+..+|+.+|.+++-.
T Consensus 70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhc
Confidence 3456899999999999999999 8999999999999999999999876543
No 26
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.61 E-value=4.2e-05 Score=54.12 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCh---hhhccCCC-CC-CcccccccccccC
Q 046570 11 IKGSWSPQEDATLIKLVEQHGPRNW---SMISSGIP-GR-SGKSCRLRWCNQL 58 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G~~~W---~~IA~~lp-gR-t~~qCr~Rw~~~L 58 (255)
.+-.||++|..+++.++..+|.++| ..|+..|. .+ |..||+.|++.|.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999997799 99998773 45 9999999987653
No 27
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.00021 Score=69.83 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=47.9
Q ss_pred ccCCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570 62 VQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 62 l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k~~ 114 (255)
++.+.|+--||+.|..+|.+|| +.|++|++.++-.|+.||++||..++....+
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~ 58 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIK 58 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHh
Confidence 4568999999999999999999 5699999999999999999999998876643
No 28
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.20 E-value=0.00017 Score=69.75 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc
Q 046570 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ 57 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~ 57 (255)
....||.+|..+|++.|..|| .+|.+||.|+.+|+..||..||.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 566899999999999999999 6899999999999999999999763
No 29
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=97.10 E-value=0.00035 Score=68.94 Aligned_cols=48 Identities=21% Similarity=0.576 Sum_probs=44.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccc
Q 046570 8 NDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN 56 (255)
Q Consensus 8 ~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~ 56 (255)
....++.||.+|.-+|+++|..|| .+|.+||.++.+||..||..++.+
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~ 296 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLR 296 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHh
Confidence 456678899999999999999999 689999999999999999999976
No 30
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.06 E-value=0.00047 Score=66.75 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=42.5
Q ss_pred CCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNST 108 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~l 108 (255)
..+||.+|..+|++++..||..|.+||.++++||..||--||..+
T Consensus 279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 358999999999999999999999999999999999999999765
No 31
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.93 E-value=0.001 Score=65.75 Aligned_cols=46 Identities=13% Similarity=0.305 Sum_probs=43.2
Q ss_pred cCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHH
Q 046570 63 QHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNST 108 (255)
Q Consensus 63 ~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~l 108 (255)
.+..||.+|..+|++++..||-.|.+||.++++||..||--||..+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 3568999999999999999999999999999999999999999765
No 32
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.85 E-value=0.0014 Score=55.42 Aligned_cols=54 Identities=24% Similarity=0.479 Sum_probs=45.4
Q ss_pred cCCCCChhhHHHHHHHHHHc---CC----chhhhhccCCCCCHHHHHHHHHHHHHhHHHhhh
Q 046570 63 QHRPFTPAEDSIIIQAHAVH---GN----KWATIARSLPGRTDNAIKNHWNSTLRRKRMAEL 117 (255)
Q Consensus 63 ~k~~WT~eED~~Ll~~v~~~---G~----~W~~IA~~~pgRT~~qcknRw~~llr~k~~~~~ 117 (255)
....||.+||.+|-+.|..| |+ -...++..+ +||+.+|.-||+..+|++.....
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~i 63 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEAI 63 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHHH
Confidence 35689999999999998876 32 378888888 99999999999999998866543
No 33
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.82 E-value=0.00079 Score=50.46 Aligned_cols=50 Identities=24% Similarity=0.496 Sum_probs=36.7
Q ss_pred CCCChhhHHHHHHHHHH------cC--C------chhhhhccCC----CCCHHHHHHHHHHHHHhHHH
Q 046570 65 RPFTPAEDSIIIQAHAV------HG--N------KWATIARSLP----GRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 65 ~~WT~eED~~Ll~~v~~------~G--~------~W~~IA~~~p----gRT~~qcknRw~~llr~k~~ 114 (255)
..||.+|...||.++.. ++ + -|..||..|. .||+.||++||.++.+....
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~ 69 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK 69 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999876 21 1 3999999863 79999999999998776643
No 34
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=96.56 E-value=0.0032 Score=45.71 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=33.0
Q ss_pred CCCCChhhHHHHHHHHHHcC--------Cc-hhhhhccCC-CCCHHHHHHHHHHHHHhHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHG--------NK-WATIARSLP-GRTDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G--------~~-W~~IA~~~p-gRT~~qcknRw~~llr~k~ 113 (255)
+.+||.+||..|+..|+.+. ++ |.+++...| .+|-.+.|+||.+.|+.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 46899999999999997542 22 999999988 9999999999988887654
No 35
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.37 E-value=0.0013 Score=55.57 Aligned_cols=50 Identities=22% Similarity=0.565 Sum_probs=41.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHh---CCC---ChhhhccCCCCCCcccccccccccCCC
Q 046570 10 RIKGSWSPQEDATLIKLVEQH---GPR---NWSMISSGIPGRSGKSCRLRWCNQLSP 60 (255)
Q Consensus 10 ~~kg~WT~eED~~L~~lv~~~---G~~---~W~~IA~~lpgRt~~qCr~Rw~~~L~p 60 (255)
.+...||.+||.+|.+.|-+| |.- .+..|+..| +||+..|.-||..++.+
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHH
Confidence 467789999999999999988 311 388888888 79999999999887763
No 36
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.91 E-value=0.0027 Score=46.06 Aligned_cols=51 Identities=20% Similarity=0.379 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC------C--ChhhhccCCC-CCCcccccccccccCCCCc
Q 046570 12 KGSWSPQEDATLIKLVEQHGP------R--NWSMISSGIP-GRSGKSCRLRWCNQLSPTV 62 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~------~--~W~~IA~~lp-gRt~~qCr~Rw~~~L~p~l 62 (255)
+-+||.+||..|+..|..+.. + -|..++..-| .+|-++-++||...|.+..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 468999999999999966521 1 2999988877 8999999999998887643
No 37
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.83 E-value=0.009 Score=55.76 Aligned_cols=47 Identities=21% Similarity=0.444 Sum_probs=42.9
Q ss_pred CCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
-..|+..|+.+|+++....| ++|..||.+++.|+...||.+|.++.-
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 35799999999999999999 899999999999999999999977643
No 38
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.80 E-value=0.0021 Score=48.13 Aligned_cols=46 Identities=26% Similarity=0.615 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHH--h----C--CC-----ChhhhccCC----CCCCccccccccccc
Q 046570 12 KGSWSPQEDATLIKLVEQ--H----G--PR-----NWSMISSGI----PGRSGKSCRLRWCNQ 57 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~--~----G--~~-----~W~~IA~~l----pgRt~~qCr~Rw~~~ 57 (255)
+-.||.+|...|+.++.. + + .. -|..||..| ..||+.||+.+|.++
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL 63 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 357999999999999977 1 1 11 399999877 369999999999763
No 39
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.69 E-value=0.003 Score=58.87 Aligned_cols=48 Identities=21% Similarity=0.437 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCC
Q 046570 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS 59 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~ 59 (255)
---|+..|+-+|++.....|.+||..||.++..|+...|+.||..++.
T Consensus 63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 345999999999999999999999999999999999999999977543
No 40
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=95.63 E-value=0.013 Score=50.24 Aligned_cols=53 Identities=21% Similarity=0.400 Sum_probs=42.6
Q ss_pred cCCCCChhhHHHHHHHHHHcCCc-------hhhhhccCCCCCHHHHHHHHHHHHHhHHHhh
Q 046570 63 QHRPFTPAEDSIIIQAHAVHGNK-------WATIARSLPGRTDNAIKNHWNSTLRRKRMAE 116 (255)
Q Consensus 63 ~k~~WT~eED~~Ll~~v~~~G~~-------W~~IA~~~pgRT~~qcknRw~~llr~k~~~~ 116 (255)
++..||.++|.+|-+.|..|+.. ...++..+ +||+.+|..||+.+++++....
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee~ 63 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQEQ 63 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHHH
Confidence 45789999999998888877632 55556677 9999999999999999875443
No 41
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.51 E-value=0.028 Score=41.20 Aligned_cols=50 Identities=22% Similarity=0.489 Sum_probs=40.8
Q ss_pred CCCCChhhHHHHHHHHHHcCC-----------------chhhhhccC-----CCCCHHHHHHHHHHHHHhHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGN-----------------KWATIARSL-----PGRTDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~-----------------~W~~IA~~~-----pgRT~~qcknRw~~llr~k~ 113 (255)
...||++|...|++++.+|.. -|..|+..| +.||..+|+.+|..+.....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K 73 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK 73 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 457999999999999987631 399998875 26999999999998876543
No 42
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=95.19 E-value=0.04 Score=58.97 Aligned_cols=100 Identities=15% Similarity=0.319 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccc-------ccccc----------------------------
Q 046570 13 GSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRL-------RWCNQ---------------------------- 57 (255)
Q Consensus 13 g~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~-------Rw~~~---------------------------- 57 (255)
.-||.-+=..++.+..+||-.+...||..|.++|...++. ||..+
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~ 904 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG 904 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999889999999999999877763 22110
Q ss_pred --------------C-CCCccCCCCChhhHHHHHHHHHHcC-Cchhhhhc------c------CCCCCHHHHHHHHHHHH
Q 046570 58 --------------L-SPTVQHRPFTPAEDSIIIQAHAVHG-NKWATIAR------S------LPGRTDNAIKNHWNSTL 109 (255)
Q Consensus 58 --------------L-~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~------~------~pgRT~~qcknRw~~ll 109 (255)
+ .+..++..||++||..|+-++.+|| .+|..|-. . |..||+..|..|...++
T Consensus 905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~ 984 (1033)
T PLN03142 905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI 984 (1033)
T ss_pred HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence 0 1223345799999999999999999 67999832 2 24899999999999988
Q ss_pred HhH
Q 046570 110 RRK 112 (255)
Q Consensus 110 r~k 112 (255)
+--
T Consensus 985 ~~~ 987 (1033)
T PLN03142 985 RLI 987 (1033)
T ss_pred HHH
Confidence 654
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.00 E-value=0.014 Score=42.94 Aligned_cols=48 Identities=31% Similarity=0.489 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHh-----CCC-----------ChhhhccCC-----CCCCcccccccccccC
Q 046570 11 IKGSWSPQEDATLIKLVEQH-----GPR-----------NWSMISSGI-----PGRSGKSCRLRWCNQL 58 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~-----G~~-----------~W~~IA~~l-----pgRt~~qCr~Rw~~~L 58 (255)
++..||++|...|+.+|.+| |.. -|..|+..| +.|+..||+..|.++.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999887 211 299998876 3699999999998753
No 44
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=94.16 E-value=0.012 Score=50.45 Aligned_cols=49 Identities=18% Similarity=0.527 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC------hhhhccCCCCCCcccccccccccCC
Q 046570 10 RIKGSWSPQEDATLIKLVEQHGPRN------WSMISSGIPGRSGKSCRLRWCNQLS 59 (255)
Q Consensus 10 ~~kg~WT~eED~~L~~lv~~~G~~~------W~~IA~~lpgRt~~qCr~Rw~~~L~ 59 (255)
.+...||.++|.+|...|-.|+... +..++..| +||+.+|..||..++.
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr 57 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR 57 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence 4678999999999999998886332 45555555 7999999999965544
No 45
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=94.01 E-value=0.1 Score=49.95 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=67.9
Q ss_pred ChhhhccCCCCCCcccccccccccCCCC-------------------------ccCCCCChhhHHHHHHHHHHcCCchhh
Q 046570 34 NWSMISSGIPGRSGKSCRLRWCNQLSPT-------------------------VQHRPFTPAEDSIIIQAHAVHGNKWAT 88 (255)
Q Consensus 34 ~W~~IA~~lpgRt~~qCr~Rw~~~L~p~-------------------------l~k~~WT~eED~~Ll~~v~~~G~~W~~ 88 (255)
.|.-+.-..+.|...-.-.||....++. ++-..||.+|-.-|+.+++.|.-+|--
T Consensus 75 ~W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~V 154 (445)
T KOG2656|consen 75 PWKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFV 154 (445)
T ss_pred CceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEE
Confidence 5888887778899888899998763321 223469999999999999999999999
Q ss_pred hhcc-----CCC-CCHHHHHHHHHHHHHhHHHh
Q 046570 89 IARS-----LPG-RTDNAIKNHWNSTLRRKRMA 115 (255)
Q Consensus 89 IA~~-----~pg-RT~~qcknRw~~llr~k~~~ 115 (255)
||.. ++. ||-..++.||+...+..++.
T Consensus 155 IaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA 187 (445)
T KOG2656|consen 155 IADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA 187 (445)
T ss_pred EeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence 9987 675 99999999999988877654
No 46
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=91.96 E-value=0.13 Score=49.17 Aligned_cols=49 Identities=24% Similarity=0.400 Sum_probs=43.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccc
Q 046570 7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN 56 (255)
Q Consensus 7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~ 56 (255)
......-+||..|-.++.++....| .++..||..+|+|..+|++..|.+
T Consensus 360 g~~~~~~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 360 GKKKGALRWSKKEIEKFYKALSIWG-TDFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHhc-chHHHHHHhcCchhHHHHHHHHHH
Confidence 3455666899999999999999999 479999999999999999999976
No 47
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=91.76 E-value=0.35 Score=45.29 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=42.8
Q ss_pred CCCCChhhHHHHHHHHHHc----------CCchhhhhccCC----CCCHHHHHHHHHHHHHhHHHhhh
Q 046570 64 HRPFTPAEDSIIIQAHAVH----------GNKWATIARSLP----GRTDNAIKNHWNSTLRRKRMAEL 117 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~----------G~~W~~IA~~~p----gRT~~qcknRw~~llr~k~~~~~ 117 (255)
...|+.+|-..||.+.... +..|..||..+. -||+.+|+++|.++.++......
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~ 121 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKA 121 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999999997531 335999999543 59999999999999887655443
No 48
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=91.55 E-value=0.23 Score=47.47 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=43.2
Q ss_pred CCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 65 RPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.+||..|-+++..+....|..++.||..||.|...||+.+|.+--++
T Consensus 366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence 48999999999999999999999999999999999999999765443
No 49
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=91.21 E-value=0.3 Score=39.46 Aligned_cols=51 Identities=16% Similarity=0.374 Sum_probs=40.0
Q ss_pred CccCCCCChhhHHHHHHHHHHcCC----chhhhhcc------------CCCCCHHHHHHHHHHHHHh
Q 046570 61 TVQHRPFTPAEDSIIIQAHAVHGN----KWATIARS------------LPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 61 ~l~k~~WT~eED~~Ll~~v~~~G~----~W~~IA~~------------~pgRT~~qcknRw~~llr~ 111 (255)
..++..||++||.-|+-++.+||- .|..|... |..||+..|..|-..+++-
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 556779999999999999999996 69888543 2479999999999988864
No 50
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=88.96 E-value=0.86 Score=34.24 Aligned_cols=48 Identities=25% Similarity=0.538 Sum_probs=36.8
Q ss_pred CCChhhHHHHHHHHHHc---CC----------chhhhhccCC-----CCCHHHHHHHHHHHHHhHH
Q 046570 66 PFTPAEDSIIIQAHAVH---GN----------KWATIARSLP-----GRTDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 66 ~WT~eED~~Ll~~v~~~---G~----------~W~~IA~~~p-----gRT~~qcknRw~~llr~k~ 113 (255)
.||++.+..|++++.+. |+ .|..|+..|. ..+..||++||..+.+...
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~ 66 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYR 66 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Confidence 49999999999997542 21 3999988763 4678899999988776653
No 51
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=87.50 E-value=0.17 Score=40.87 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=36.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CChhhhccCC------------CCCCccccccccc
Q 046570 8 NDRIKGSWSPQEDATLIKLVEQHGP---RNWSMISSGI------------PGRSGKSCRLRWC 55 (255)
Q Consensus 8 ~~~~kg~WT~eED~~L~~lv~~~G~---~~W~~IA~~l------------pgRt~~qCr~Rw~ 55 (255)
+..++..||.+||.-|+-++.+||. +.|..|-..| ..||+..+..|..
T Consensus 45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~ 107 (118)
T PF09111_consen 45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCN 107 (118)
T ss_dssp STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHH
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHH
Confidence 3667888999999999999999998 7899987654 3577777777653
No 52
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=85.48 E-value=0.41 Score=49.29 Aligned_cols=44 Identities=11% Similarity=0.326 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccc
Q 046570 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN 56 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~ 56 (255)
...||+.|-.++.+++..|. +++-.|+++|+++|..||-+.|+.
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVKSKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHHHHHhccccHHHHHHHHHH
Confidence 35799999999999999999 789999999999999999887753
No 53
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=84.74 E-value=0.84 Score=34.57 Aligned_cols=29 Identities=34% Similarity=0.775 Sum_probs=17.5
Q ss_pred CCCCCCCCCHHHHHHH--------HHHHHHhCCCChhhhc
Q 046570 8 NDRIKGSWSPQEDATL--------IKLVEQHGPRNWSMIS 39 (255)
Q Consensus 8 ~~~~kg~WT~eED~~L--------~~lv~~~G~~~W~~IA 39 (255)
|....|-||+++|..| ..++.+|| +..|+
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~ 79 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIE 79 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHH
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 6678999999999999 45667888 55554
No 54
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=84.04 E-value=2.3 Score=28.51 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 69 PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 69 ~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
++.+..++.++...|-.|.+||..+ |.|...|+.+...-++
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~ 52 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK 52 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence 4566778888888899999999999 9999999998876544
No 55
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=82.31 E-value=2.3 Score=41.76 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=44.1
Q ss_pred CCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
...||.||--++-+++..||..+.+|-..||.|+-..+...|+...+..
T Consensus 187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~ 235 (534)
T KOG1194|consen 187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTR 235 (534)
T ss_pred cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999999999998776543
No 56
>smart00595 MADF subfamily of SANT domain.
Probab=75.55 E-value=4.6 Score=29.86 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=22.6
Q ss_pred chhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 85 KWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 85 ~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
-|..||..| |-+...|+.+|.++-...
T Consensus 29 aW~~Ia~~l-~~~~~~~~~kw~~LR~~y 55 (89)
T smart00595 29 AWEEIAEEL-GLSVEECKKRWKNLRDRY 55 (89)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 499999999 559999999999875443
No 57
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=75.25 E-value=1.4 Score=41.28 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHHHh---------CCCChhhhccCC----CCCCcccccccccccC
Q 046570 13 GSWSPQEDATLIKLVEQH---------GPRNWSMISSGI----PGRSGKSCRLRWCNQL 58 (255)
Q Consensus 13 g~WT~eED~~L~~lv~~~---------G~~~W~~IA~~l----pgRt~~qCr~Rw~~~L 58 (255)
..|+.+|-..|+.+.... ....|..||..+ .-|++.||+.+|.+..
T Consensus 55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 679999999999988532 113599999844 3499999999997743
No 58
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=73.99 E-value=5.6 Score=40.45 Aligned_cols=49 Identities=14% Similarity=0.341 Sum_probs=41.2
Q ss_pred CCCCChhhHHHHHHHHHHcCCchhhh----------hccCCCCCHHHHHHHHHHHHHhH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGNKWATI----------ARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~~W~~I----------A~~~pgRT~~qcknRw~~llr~k 112 (255)
+..||-.|...++.+++++|..+.+| -....-+|..|++.+|+.++++.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m 146 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRM 146 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999999888 33345678889999998887664
No 59
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=73.94 E-value=5.8 Score=26.01 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHcCC-chhhhhccCCCCCHHHHHHHHHHH
Q 046570 70 AEDSIIIQAHAVHGN-KWATIARSLPGRTDNAIKNHWNST 108 (255)
Q Consensus 70 eED~~Ll~~v~~~G~-~W~~IA~~~pgRT~~qcknRw~~l 108 (255)
+=|..|+.+...-|. .|..||..+ |=|...|..|+..+
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 347788888888774 599999999 99999999999765
No 60
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=72.93 E-value=2 Score=32.20 Aligned_cols=43 Identities=26% Similarity=0.614 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------ChhhhccCCC-----CCCcccccccccc
Q 046570 14 SWSPQEDATLIKLVEQH---GPR---------NWSMISSGIP-----GRSGKSCRLRWCN 56 (255)
Q Consensus 14 ~WT~eED~~L~~lv~~~---G~~---------~W~~IA~~lp-----gRt~~qCr~Rw~~ 56 (255)
+||++.+..|++++... |.. .|..|+..|. ..+..||+.||..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~ 60 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKT 60 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 59999999999988544 211 2888888772 3557888888754
No 61
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=69.34 E-value=3.1 Score=40.87 Aligned_cols=45 Identities=16% Similarity=0.325 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccc
Q 046570 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN 56 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~ 56 (255)
.+..||.||--+|-++...|| .++++|-++||.|+-.+....|..
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~LP~rsLaSlvqyYy~ 230 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFG-KDFHKIRQALPHRSLASLVQYYYS 230 (534)
T ss_pred CcccchHHHHHHHHHHHHHhc-ccHHHHHHHccCccHHHHHHHHHH
Confidence 356799999999999999999 689999999999999988887755
No 62
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=68.99 E-value=7.3 Score=40.53 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=41.4
Q ss_pred CCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHH
Q 046570 65 RPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTL 109 (255)
Q Consensus 65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~ll 109 (255)
..||+.|-.++-+++..|...+-.|++.++++|-.+|-..|+.+.
T Consensus 620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWK 664 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWK 664 (907)
T ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999988877654
No 63
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=68.55 E-value=10 Score=33.47 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=34.3
Q ss_pred CCChhhHHHHHHHHHHcCCchhhhhcc--CC-CCCHHHHHHHHHHHHHh
Q 046570 66 PFTPAEDSIIIQAHAVHGNKWATIARS--LP-GRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 66 ~WT~eED~~Ll~~v~~~G~~W~~IA~~--~p-gRT~~qcknRw~~llr~ 111 (255)
.|++.+|-+|+.+| ..|+.-..|+.- |. .-|-..+..||+.++=-
T Consensus 1 rW~~~DDl~Li~av-~~~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd 48 (199)
T PF13325_consen 1 RWKPEDDLLLINAV-EQTNDLESVHLGVKFSCKFTLQEIEERWYALLYD 48 (199)
T ss_pred CCCchhhHHHHHHH-HHhcCHHHHHccCCcCCcCcHHHHHHHHHHHHcC
Confidence 49999999999998 456666666554 33 45779999999998743
No 64
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=66.65 E-value=4.3 Score=38.94 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhh-ccCCCCCCcccccccccc
Q 046570 13 GSWSPQEDATLIKLVEQHGPRNWSMI-SSGIPGRSGKSCRLRWCN 56 (255)
Q Consensus 13 g~WT~eED~~L~~lv~~~G~~~W~~I-A~~lpgRt~~qCr~Rw~~ 56 (255)
-.||.+|-..+-..+..|| +++..| +..+++|+...|..-|+-
T Consensus 278 ~~wsEeEcr~FEegl~~yG-KDF~lIr~nkvrtRsvgElVeyYYl 321 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYG-KDFHLIRANKVRTRSVGELVEYYYL 321 (445)
T ss_pred ccCCHHHHHHHHHHHHHhc-ccHHHHHhcccccchHHHHHHHHHH
Confidence 3599999999999999999 789999 678899999999887753
No 65
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=65.57 E-value=6.9 Score=39.84 Aligned_cols=46 Identities=15% Similarity=0.442 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhcc----------CCCCCCcccccccccccC
Q 046570 12 KGSWSPQEDATLIKLVEQHGPRNWSMISS----------GIPGRSGKSCRLRWCNQL 58 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~----------~lpgRt~~qCr~Rw~~~L 58 (255)
|..||..|...+..++..+| .++..|-. ...-+|..|+|.+|++.+
T Consensus 88 ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~ 143 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLV 143 (782)
T ss_pred ccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence 67899999999999999999 78999822 223466788888887644
No 66
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=65.14 E-value=12 Score=30.92 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570 70 AEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 70 eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k~~ 114 (255)
+-|..|+.+..+-| ..|+.||+.+ |-|...|+.|+..+...-..
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~GvI 53 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAGII 53 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 46888888888877 4699999999 99999999999887765433
No 67
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=61.29 E-value=6.1 Score=40.00 Aligned_cols=51 Identities=20% Similarity=0.392 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccc
Q 046570 5 SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN 56 (255)
Q Consensus 5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~ 56 (255)
+..+....++|+..|-.+...+....|+ +.+.||..+|+|+..|++..|..
T Consensus 402 t~sk~~~~~~w~~se~e~fyka~~~~gs-~~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 402 TYSKKLETDKWDASETELFYKALSERGS-DFSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred hccCccccCcccchhhHHhhhHHhhhcc-cccccccccccccHHHHHHHHhh
Confidence 3456777899999999999999999994 79999999999999999998754
No 68
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=61.21 E-value=11 Score=38.33 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=43.4
Q ss_pred CCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
...|+..|-.+...+....|.+.+.|+..||+|...|+|.+|..--++
T Consensus 409 ~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r 456 (584)
T KOG2009|consen 409 TDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKR 456 (584)
T ss_pred cCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhc
Confidence 568999999999999999999999999999999999999999654433
No 69
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=60.18 E-value=18 Score=23.81 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 70 AEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 70 eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
+++..++.++--.|-.+.+||..| |-|...|+.+....+++-
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~kL 48 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALKKL 48 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHHHh
Confidence 345555666555566799999999 889999999887776653
No 70
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=59.54 E-value=16 Score=27.25 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=27.7
Q ss_pred HHHHHHHHcCC--------chhhhhccCCC-C--C--HHHHHHHHHHHHH
Q 046570 74 IIIQAHAVHGN--------KWATIARSLPG-R--T--DNAIKNHWNSTLR 110 (255)
Q Consensus 74 ~Ll~~v~~~G~--------~W~~IA~~~pg-R--T--~~qcknRw~~llr 110 (255)
.|..+|..+|+ .|..||..|+- . + ..+++..|..+|-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 57888888885 59999999842 1 1 3678998887764
No 71
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=58.79 E-value=16 Score=35.27 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=40.4
Q ss_pred CCCChhhHHHHHHHHHHcCCchhhhhc-cCCCCCHHHHHHHHHHHH
Q 046570 65 RPFTPAEDSIIIQAHAVHGNKWATIAR-SLPGRTDNAIKNHWNSTL 109 (255)
Q Consensus 65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~-~~pgRT~~qcknRw~~ll 109 (255)
..|+++|-..+-+.++.||..+..|.. .++.|+--.|-..|+.+.
T Consensus 278 ~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYYlWK 323 (445)
T KOG4329|consen 278 SGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYYLWK 323 (445)
T ss_pred ccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHHHhh
Confidence 589999999999999999999999966 588999999988887654
No 72
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=57.33 E-value=15 Score=30.72 Aligned_cols=45 Identities=11% Similarity=0.094 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570 69 PAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 69 ~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k~~ 114 (255)
.+-|.+|+.+..+-| -.|+.||+.+ |-|...|+.|++.+......
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 356788888877777 4699999999 99999999999888776543
No 73
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=53.48 E-value=28 Score=27.58 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=27.2
Q ss_pred HHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 75 IIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 75 Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
++.+.-..|-.+.+||..+ |.|...|++++....++
T Consensus 121 il~l~~~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 156 (161)
T TIGR02985 121 IFILSRFEGKSYKEIAEEL-GISVKTVEYHISKALKE 156 (161)
T ss_pred HHHHHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3333334567899999999 99999999999876544
No 74
>KOG1878 consensus Nuclear receptor coregulator SMRT/SMRTER, contains Myb-like domains [Transcription]
Probab=53.05 E-value=5.9 Score=43.93 Aligned_cols=44 Identities=27% Similarity=0.453 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccc
Q 046570 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWC 55 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~ 55 (255)
+...|+++|-+....-...|- +++..|+.+|..++..+|..-|+
T Consensus 224 ~~n~Ws~~Ek~~fk~rf~~H~-knf~~~as~~erkSv~d~vlfyy 267 (1672)
T KOG1878|consen 224 RMNEWSPEEKELFKSRFAQHV-KNFGLIASFFERKSVSDCVLFYY 267 (1672)
T ss_pred HhhhccccccccccchhhhcC-cchhhhhhhhcccchhhceeeee
Confidence 345799999888888888887 68999999998899999988774
No 75
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=52.80 E-value=8.8 Score=41.60 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCC------------CCCCcccccccc
Q 046570 9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGI------------PGRSGKSCRLRW 54 (255)
Q Consensus 9 ~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l------------pgRt~~qCr~Rw 54 (255)
..++..||.+||..|+-++.+||.++|..|-..| ..||+..+..|.
T Consensus 923 ~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~ 980 (1033)
T PLN03142 923 QNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRC 980 (1033)
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHH
Confidence 3455569999999999999999999999995543 346666555554
No 76
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=50.92 E-value=28 Score=26.21 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=28.8
Q ss_pred HHHHHHHHcCC--------chhhhhccCCC-----CCHHHHHHHHHHHHHhH
Q 046570 74 IIIQAHAVHGN--------KWATIARSLPG-----RTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 74 ~Ll~~v~~~G~--------~W~~IA~~~pg-----RT~~qcknRw~~llr~k 112 (255)
.|..+|...|+ .|..||..|+- .....++..|..+|..-
T Consensus 36 ~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~y 87 (93)
T smart00501 36 RLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLPF 87 (93)
T ss_pred HHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHH
Confidence 57777888775 69999998742 23567888888877543
No 77
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=50.45 E-value=60 Score=30.75 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=37.1
Q ss_pred CCCCChhhHHHHHHHHHHc-CCc---hhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 64 HRPFTPAEDSIIIQAHAVH-GNK---WATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~-G~~---W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
-..||.-|...|+.+.... |.. -..|++.++||+..+|++.-+.+..+
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~r 72 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGR 72 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHH
Confidence 4689999999998887654 433 56889999999999999866554433
No 78
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=49.93 E-value=7.8 Score=30.77 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHHh--------CCC----------------------ChhhhccCCCCCCcccccccccccC
Q 046570 14 SWSPQEDATLIKLVEQH--------GPR----------------------NWSMISSGIPGRSGKSCRLRWCNQL 58 (255)
Q Consensus 14 ~WT~eED~~L~~lv~~~--------G~~----------------------~W~~IA~~lpgRt~~qCr~Rw~~~L 58 (255)
+||++||-.|...|.+| ++. -+...+...|..|..+-|+||+..+
T Consensus 1 kfTA~dDY~Lc~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fF~~~~~~~p~HT~~sWRDR~RKfv 75 (105)
T PF09197_consen 1 KFTADDDYALCKAIKKQFYRDIYQKDPDTGSSLISDGDSKEFIPKRDMRSFFKDLARKNPRHTENSWRDRYRKFV 75 (105)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSB-TTSS-B----------------TTHHHHHHHHTTTS-HHHHHHHHHHTH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhCcccccccccCCCccccccchhhHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 58999999999999766 110 1344445556777777777776654
No 79
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=46.24 E-value=21 Score=39.41 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHc-CCchhhhh
Q 046570 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVH-GNKWATIA 90 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~-G~~W~~IA 90 (255)
-.-|..++|..|+-.|-+||.++|..|-.- +.-|-. =...+....-.+.|=......|+.++..+ +.+|...+
T Consensus 1133 ~~~W~~e~Ds~LLiGI~khGygswe~Ir~D-----p~L~l~-dKi~~~e~~P~a~~L~~R~~yLls~~~~~~~~~~~~~~ 1206 (1373)
T KOG0384|consen 1133 DCDWGSEDDSMLLIGIFKHGYGSWEAIRLD-----PDLGLT-DKIFLVETVPQAKHLQRRADYLLSLLRKHDKGNTPKKL 1206 (1373)
T ss_pred ccCCCchhhhhHhhhhhhcccccHHHhccC-----ccccch-hhhcccccCCchHHHHHHHHHHHHHHhhcccCCCchhh
Confidence 345999999999999999999999999321 111111 01111111334556666667777777666 55565544
Q ss_pred cc
Q 046570 91 RS 92 (255)
Q Consensus 91 ~~ 92 (255)
..
T Consensus 1207 ~~ 1208 (1373)
T KOG0384|consen 1207 KR 1208 (1373)
T ss_pred hc
Confidence 33
No 80
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=45.78 E-value=7.1 Score=29.45 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=10.0
Q ss_pred CCccCCCCChhhHHHHH
Q 046570 60 PTVQHRPFTPAEDSIII 76 (255)
Q Consensus 60 p~l~k~~WT~eED~~Ll 76 (255)
|.-..|-||+++|..|.
T Consensus 43 P~n~~GiWT~eDD~~L~ 59 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLR 59 (87)
T ss_dssp -TT-TT---HHHHHHHT
T ss_pred CCCCCCCcCHHHHHHHH
Confidence 55567899999999984
No 81
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=43.11 E-value=28 Score=24.76 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=22.5
Q ss_pred chhhhhccCCC-CCHHHHHHHHHHHHHhH
Q 046570 85 KWATIARSLPG-RTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 85 ~W~~IA~~~pg-RT~~qcknRw~~llr~k 112 (255)
-|..||..|+. -+...|+.||..+....
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y 56 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLRDRY 56 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 49999999963 67889999999876543
No 82
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=42.56 E-value=48 Score=25.65 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=34.5
Q ss_pred CCCChhhHHHHHHHHHHc----CC----chhhh----hccCC-CCCHHHHHHHHHHHHHhHHHh
Q 046570 65 RPFTPAEDSIIIQAHAVH----GN----KWATI----ARSLP-GRTDNAIKNHWNSTLRRKRMA 115 (255)
Q Consensus 65 ~~WT~eED~~Ll~~v~~~----G~----~W~~I----A~~~p-gRT~~qcknRw~~llr~k~~~ 115 (255)
.-||++++-.||+++..| |. .|..+ ...+. .=+.+|+..+.+.+-++....
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~ 68 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNA 68 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999998766 52 34333 33332 337789988888776665443
No 83
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=41.79 E-value=55 Score=25.01 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=25.9
Q ss_pred HHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 77 QAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 77 ~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.++...|..+..||..+ |-+...|+++....+++
T Consensus 120 ~~~~~~g~s~~eIA~~l-~~s~~~v~~~~~~~~~k 153 (158)
T TIGR02937 120 VLRYLEGLSYKEIAEIL-GISVGTVKRRLKRARKK 153 (158)
T ss_pred hhHHhcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 33334577899999999 77999999988776554
No 84
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=41.02 E-value=75 Score=31.79 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=48.1
Q ss_pred hhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhhhhc-cCCCCCHHHHHHHHHHH
Q 046570 36 SMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIAR-SLPGRTDNAIKNHWNST 108 (255)
Q Consensus 36 ~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~-~~pgRT~~qcknRw~~l 108 (255)
..|+..+|-=-+.-||+. -..|+..|-.++-++..+||..+..|.. ++|=++-..|-..|+-+
T Consensus 267 ~Ais~LVPlGGPvLCRDe----------mEEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYYmw 330 (693)
T KOG3554|consen 267 KAISYLVPLGGPVLCRDE----------MEEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYYMW 330 (693)
T ss_pred HHHHHhhcCCCceeehhh----------hhhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHHHH
Confidence 345555565555666653 2479999999999999999999999966 57889999888877543
No 85
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=40.76 E-value=27 Score=29.64 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=34.6
Q ss_pred CCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHH
Q 046570 66 PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNS 107 (255)
Q Consensus 66 ~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~ 107 (255)
.||+|..+.|.++. .-|-.=++||..|+|.|.+.|.-+.+.
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhhc
Confidence 69999999998887 557778999999987999998776654
No 86
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=40.63 E-value=11 Score=31.01 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCC
Q 046570 18 QEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT 61 (255)
Q Consensus 18 eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~ 61 (255)
+-|.+|+.+..+.|...|..||+.+ |-+...|+.|+.+....+
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~G 51 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAG 51 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 5789999999999988999999998 799999999998865544
No 87
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=38.78 E-value=8 Score=32.33 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCc
Q 046570 17 PQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTV 62 (255)
Q Consensus 17 ~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l 62 (255)
.+-|.+|+.+..+.|...|..||+.+ |-+...|+.|+.+..+.++
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45689999999999988999999998 7899999999988665443
No 88
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=36.36 E-value=69 Score=24.19 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570 70 AEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 70 eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k~~ 114 (255)
+.|..|+.+....| -.+..||..+ |-+...|+.+...+......
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~g~i 47 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEEGVI 47 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 46788888888877 4699999999 99999999999988776543
No 89
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=35.77 E-value=31 Score=28.99 Aligned_cols=45 Identities=16% Similarity=0.196 Sum_probs=33.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCC----CCCccccccccc
Q 046570 10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP----GRSGKSCRLRWC 55 (255)
Q Consensus 10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp----gRt~~qCr~Rw~ 55 (255)
.....=|+.|-.-|..||.+|| .++...|.-.- ..|+.||+.+..
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhG-dDy~aMarD~KLN~~Q~T~~qlrrki~ 160 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHG-DDYKAMARDRKLNYMQHTPGQLRRKIR 160 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHC-ccHHHHhccCCCCcccCCHHHHHHHHH
Confidence 4566789999999999999999 68888876431 245555555443
No 90
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=35.43 E-value=81 Score=25.44 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=23.9
Q ss_pred HcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 81 VHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 81 ~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
..|-.+..||..| |-+...|+++....+++
T Consensus 142 ~~~~s~~eIA~~l-gis~~tV~~~l~ra~~~ 171 (182)
T PRK09652 142 IEGLSYEEIAEIM-GCPIGTVRSRIFRAREA 171 (182)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567899999999 89999999887754443
No 91
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=34.67 E-value=97 Score=19.15 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=26.7
Q ss_pred CChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHH
Q 046570 67 FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNST 108 (255)
Q Consensus 67 WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~l 108 (255)
+++. +..++.++-..|..+..||..+ |-+...|+.+....
T Consensus 11 l~~~-~~~~~~~~~~~~~~~~~ia~~~-~~s~~~i~~~~~~~ 50 (55)
T cd06171 11 LPER-EREVILLRFGEGLSYEEIAEIL-GISRSTVRQRLHRA 50 (55)
T ss_pred CCHH-HHHHHHHHHhcCCCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 3343 4455555555677899999998 77777776655443
No 92
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=33.53 E-value=43 Score=25.27 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCchhhhhccCCCCCHHH
Q 046570 72 DSIIIQAHAVHGNKWATIARSLPGRTDNA 100 (255)
Q Consensus 72 D~~Ll~~v~~~G~~W~~IA~~~pgRT~~q 100 (255)
|+-|..+....|..|..+|.++ |=|..+
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~L-gls~~~ 29 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDL-GLSQTD 29 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHc-CCCHHH
Confidence 4567788899999999999998 444443
No 93
>PF13340 DUF4096: Putative transposase of IS4/5 family (DUF4096)
Probab=32.43 E-value=36 Score=24.60 Aligned_cols=60 Identities=17% Similarity=0.339 Sum_probs=38.1
Q ss_pred ChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHH---HHcCCchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 34 NWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAH---AVHGNKWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 34 ~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v---~~~G~~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
.|..|+..||.....--+.+ -.+..+++++ ...|..|..+...|| +...|..||+...+
T Consensus 5 ~W~~i~p~lp~~~~~~~~~~----------------~~~R~v~~ail~~lrtG~~Wr~LP~~fg--~~~tv~~~f~rW~~ 66 (75)
T PF13340_consen 5 EWALIEPLLPPRKPRGGRPR----------------IDLREVLNAILYVLRTGCPWRDLPEDFG--PWSTVYRRFRRWSR 66 (75)
T ss_pred HHHHHHhhCCCCCCCCCCCc----------------cchHHHHhcccccceecceecccchhcc--CcCcHHHHHHHHHH
Confidence 48999999876443221111 1234455553 457889999999997 45567888776554
Q ss_pred h
Q 046570 111 R 111 (255)
Q Consensus 111 ~ 111 (255)
.
T Consensus 67 ~ 67 (75)
T PF13340_consen 67 S 67 (75)
T ss_pred c
Confidence 3
No 94
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=32.33 E-value=69 Score=20.52 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHH
Q 046570 71 EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHW 105 (255)
Q Consensus 71 ED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw 105 (255)
|-..|.+++..++++..+.|..+ |=+...+..+.
T Consensus 6 E~~~i~~aL~~~~gn~~~aA~~L-gisr~tL~~kl 39 (42)
T PF02954_consen 6 EKQLIRQALERCGGNVSKAARLL-GISRRTLYRKL 39 (42)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHH-TS-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH-CCCHHHHHHHH
Confidence 66788889999999999999998 66666665543
No 95
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=32.19 E-value=80 Score=30.70 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=42.0
Q ss_pred cCCCCChhhHHHHHHHHHHcCC----------------chhhhhccCC-----CCCHHHHHHHHHHHHHhHHHh
Q 046570 63 QHRPFTPAEDSIIIQAHAVHGN----------------KWATIARSLP-----GRTDNAIKNHWNSTLRRKRMA 115 (255)
Q Consensus 63 ~k~~WT~eED~~Ll~~v~~~G~----------------~W~~IA~~~p-----gRT~~qcknRw~~llr~k~~~ 115 (255)
--|.|+++=++.+.++...|.. +-..||+++. .||..||..|-+.+-|++.+.
T Consensus 75 aegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~re 148 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLRE 148 (455)
T ss_pred cccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999988752 4567777752 689999999998888887554
No 96
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=32.14 E-value=81 Score=25.38 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=24.0
Q ss_pred HcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 81 VHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 81 ~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
..|..+..||..| |-|...|+++.....++
T Consensus 139 ~~~~~~~eIA~~l-gis~~tv~~~~~ra~~~ 168 (179)
T PRK11924 139 VEGLSYREIAEIL-GVPVGTVKSRLRRARQL 168 (179)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3566899999999 89999999988765444
No 97
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=32.10 E-value=61 Score=24.42 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCchhhhhccCCCCCHHH
Q 046570 72 DSIIIQAHAVHGNKWATIARSLPGRTDNA 100 (255)
Q Consensus 72 D~~Ll~~v~~~G~~W~~IA~~~pgRT~~q 100 (255)
|..|.......|..|.++|..| |=+...
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eL-g~s~~d 31 (84)
T cd08803 4 DIRMAIVADHLGLSWTELAREL-NFSVDE 31 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHc-CCCHHH
Confidence 5667778889999999999998 544443
No 98
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=31.85 E-value=1e+02 Score=25.95 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=24.2
Q ss_pred HcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 81 VHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 81 ~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
..|-...+||..| |-+...|++|+..-.++
T Consensus 148 ~~g~s~~EIA~~l-g~s~~tV~~rl~rar~~ 177 (192)
T PRK09643 148 MQGYSVADAARML-GVAEGTVKSRCARGRAR 177 (192)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3567899999999 99999999998654443
No 99
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=31.48 E-value=1.4e+02 Score=28.37 Aligned_cols=93 Identities=22% Similarity=0.380 Sum_probs=63.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCC---ChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHH
Q 046570 5 SNNNDRIKGSWSPQEDATLIKLVEQHGPR---NWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAV 81 (255)
Q Consensus 5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~---~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~ 81 (255)
|+........||.-|...|+.+....... +-..|++.++||+..++++- .+.|+ +..+.+++++
T Consensus 14 y~g~~~gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~f-l~~LK------------~rvareaiqk 80 (344)
T PF11035_consen 14 YLGEVTGPAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDF-LQQLK------------GRVAREAIQK 80 (344)
T ss_pred ccCCCCCcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHH-HHHHH------------HHHHHHHHHH
Confidence 44444445679999999999988655212 35678889999999888773 33343 2234444444
Q ss_pred -c-----CC------------chhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 82 -H-----GN------------KWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 82 -~-----G~------------~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
| |. -|..+|..+-|.-...+-.-|-++|-
T Consensus 81 v~~~g~~~~R~~e~q~paPIEvW~dla~k~tg~~ee~~t~afsq~l~ 127 (344)
T PF11035_consen 81 VHPGGLKGPRRREAQPPAPIEVWMDLAEKVTGPLEEALTAAFSQVLT 127 (344)
T ss_pred hcccccccccccccCCCccHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 2 11 39999999989888888887766654
No 100
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=31.20 E-value=21 Score=34.69 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=39.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhccC-----CCC-CCcccccccccc
Q 046570 9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSG-----IPG-RSGKSCRLRWCN 56 (255)
Q Consensus 9 ~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~-----lpg-Rt~~qCr~Rw~~ 56 (255)
+..-..||.+|-+.|..++..|- -.|--||.. ++. ||....++||+.
T Consensus 127 ~l~dn~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~ 179 (445)
T KOG2656|consen 127 HLNDNSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYS 179 (445)
T ss_pred hhccccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHH
Confidence 34447899999999999999999 469999876 555 999999999965
No 101
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=31.00 E-value=24 Score=35.15 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhh-ccCCCCCCcccccccc
Q 046570 14 SWSPQEDATLIKLVEQHGPRNWSMI-SSGIPGRSGKSCRLRW 54 (255)
Q Consensus 14 ~WT~eED~~L~~lv~~~G~~~W~~I-A~~lpgRt~~qCr~Rw 54 (255)
.||..|-.++.++..+|| +++..| +.++|-++-.++.+.|
T Consensus 287 EWSasEanLFEeALeKyG-KDFndIrqdfLPWKSl~sIveyY 327 (693)
T KOG3554|consen 287 EWSASEANLFEEALEKYG-KDFNDIRQDFLPWKSLTSIVEYY 327 (693)
T ss_pred hccchhhHHHHHHHHHhc-ccHHHHHHhhcchHHHHHHHHHH
Confidence 499999999999999999 689999 5567888877776655
No 102
>PF11427 HTH_Tnp_Tc3_1: Tc3 transposase; PDB: 1U78_A 1TC3_C.
Probab=30.68 E-value=76 Score=21.78 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHH
Q 046570 71 EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHW 105 (255)
Q Consensus 71 ED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw 105 (255)
.++..+.+..+.|-.-.+||+.+ ||+-+.|++..
T Consensus 8 ~Eqaqid~m~qlG~s~~~isr~i-~RSr~~Ir~yl 41 (50)
T PF11427_consen 8 AEQAQIDVMHQLGMSLREISRRI-GRSRTCIRRYL 41 (50)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHH-T--HHHHHHHH
T ss_pred HHHHHHHHHHHhchhHHHHHHHh-CccHHHHHHHh
Confidence 45566777789999999999999 99998877643
No 103
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=28.75 E-value=41 Score=28.49 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccc
Q 046570 14 SWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWC 55 (255)
Q Consensus 14 ~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~ 55 (255)
.||.|..++|.+|....- .=..||..|.+.|...+.-+.+
T Consensus 2 ~Wtde~~~~L~~lw~~G~--SasqIA~~lg~vsRnAViGk~h 41 (162)
T PF07750_consen 2 SWTDERVERLRKLWAEGL--SASQIARQLGGVSRNAVIGKAH 41 (162)
T ss_pred CCCHHHHHHHHHHHHcCC--CHHHHHHHhCCcchhhhhhhhh
Confidence 599999999999995543 6899999997666665555443
No 104
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=28.63 E-value=1.3e+02 Score=25.35 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHH
Q 046570 73 SIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTL 109 (255)
Q Consensus 73 ~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~ll 109 (255)
..++.+..-.|-.+.+||..+ |-|...++.+|...-
T Consensus 141 ~~~v~l~~~~Gls~~EIA~~l-giS~~tV~r~l~~aR 176 (185)
T PF07638_consen 141 RRVVELRFFEGLSVEEIAERL-GISERTVRRRLRRAR 176 (185)
T ss_pred HHHHHHHHHCCCCHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 344444445677899999999 999999999997764
No 105
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=28.07 E-value=42 Score=24.32 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCChhhhccCCCCC
Q 046570 20 DATLIKLVEQHGPRNWSMISSGIPGR 45 (255)
Q Consensus 20 D~~L~~lv~~~G~~~W~~IA~~lpgR 45 (255)
+..|..+|..|| |...+..|+-|
T Consensus 12 e~il~~Lv~~yG---W~~L~~~i~i~ 34 (64)
T PF09905_consen 12 ETILTELVEHYG---WEELGERININ 34 (64)
T ss_dssp HHHHHHHHHHT----HHHHHHHTTSS
T ss_pred HHHHHHHHHHhC---HHHHHhhcccc
Confidence 467889999999 99999987543
No 106
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=27.96 E-value=1e+02 Score=25.25 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=23.0
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|..+.+||..+ |-|...++++.....++
T Consensus 151 ~~~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T PRK09641 151 EDLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 456799999999 89999999887655443
No 107
>TIGR02943 Sig70_famx1 RNA polymerase sigma-70 factor, TIGR02943 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=27.80 E-value=1.5e+02 Score=24.73 Aligned_cols=31 Identities=13% Similarity=-0.012 Sum_probs=24.7
Q ss_pred HcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 81 VHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 81 ~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
..|-....||..| |-|.+.|+.|....+++-
T Consensus 145 ~~g~s~~EIA~~l-gis~~tvk~rl~Rar~~L 175 (188)
T TIGR02943 145 VLGFESDEICQEL-EISTSNCHVLLYRARLSL 175 (188)
T ss_pred HhCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 3566799999999 999999999887665443
No 108
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=27.21 E-value=59 Score=24.04 Aligned_cols=28 Identities=25% Similarity=0.567 Sum_probs=21.2
Q ss_pred HHHHHHHHHHcCCchhhhhccCCCCCHHH
Q 046570 72 DSIIIQAHAVHGNKWATIARSLPGRTDNA 100 (255)
Q Consensus 72 D~~Ll~~v~~~G~~W~~IA~~~pgRT~~q 100 (255)
|..|.......|..|.++|..| |=+...
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~L-g~~~~d 31 (84)
T cd08317 4 DIRLADISNLLGSDWPQLAREL-GVSETD 31 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHc-CCCHHH
Confidence 4457777888999999999998 444443
No 109
>PRK09047 RNA polymerase factor sigma-70; Validated
Probab=27.18 E-value=1.2e+02 Score=24.05 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=24.3
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
.|-.-.+||..| |-+...|++|...-+++-
T Consensus 121 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 150 (161)
T PRK09047 121 EDMDVAETAAAM-GCSEGSVKTHCSRATHAL 150 (161)
T ss_pred hcCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 456789999999 899999999987665443
No 110
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=27.07 E-value=1.7e+02 Score=23.79 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=26.0
Q ss_pred HHcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 80 AVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 80 ~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
...|-...+||..| |-+...|+.+...-+++-
T Consensus 132 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~~ 163 (172)
T PRK12523 132 RLDGMGHAEIAERL-GVSVSRVRQYLAQGLRQC 163 (172)
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34567899999999 999999999987766554
No 111
>PRK12532 RNA polymerase sigma factor; Provisional
Probab=26.86 E-value=1.7e+02 Score=24.40 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=23.2
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|-.-.+||..| |-+...|++|....++.
T Consensus 151 ~g~s~~EIA~~l-gis~~tVk~~l~Rar~~ 179 (195)
T PRK12532 151 LGFSSDEIQQMC-GISTSNYHTIMHRARES 179 (195)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466789999999 99999999988765443
No 112
>PRK04217 hypothetical protein; Provisional
Probab=26.48 E-value=1.4e+02 Score=23.82 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=34.8
Q ss_pred CCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 65 RPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
..-|+++ ..++.++...|-...+||..+ |-+...|+.++....+.
T Consensus 41 ~~Lt~ee-reai~l~~~eGlS~~EIAk~L-GIS~sTV~r~L~RArkk 85 (110)
T PRK04217 41 IFMTYEE-FEALRLVDYEGLTQEEAGKRM-GVSRGTVWRALTSARKK 85 (110)
T ss_pred ccCCHHH-HHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3455555 566777767788899999999 99999999998775443
No 113
>PLN03162 golden-2 like transcription factor; Provisional
Probab=26.40 E-value=3.9e+02 Score=26.13 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=36.5
Q ss_pred CCCCChhhHHHHHHHHHHcCCc---hhhhhccC--CCCCHHHHHHHHHHHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGNK---WATIARSL--PGRTDNAIKNHWNSTL 109 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~~---W~~IA~~~--pgRT~~qcknRw~~ll 109 (255)
+-.||++-+++++++|.++|.. =+.|-+.| +|=|...|+.|.+++.
T Consensus 237 RLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYR 287 (526)
T PLN03162 237 KVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYR 287 (526)
T ss_pred cccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 3579999999999999999942 35565554 5899999999887664
No 114
>PRK09637 RNA polymerase sigma factor SigZ; Provisional
Probab=26.25 E-value=1.2e+02 Score=25.32 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=23.8
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|-....||..| |-+...|+++.....++
T Consensus 121 ~g~~~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (181)
T PRK09637 121 EGLSQKEIAEKL-GLSLSGAKSRVQRGRVK 149 (181)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 566899999999 99999999998765544
No 115
>PRK12531 RNA polymerase sigma factor; Provisional
Probab=25.81 E-value=1.3e+02 Score=25.20 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=23.8
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
.|-...+||..| |-+...|+.|....+++-
T Consensus 156 eg~s~~EIA~~l-gis~~tVk~rl~ra~~~L 185 (194)
T PRK12531 156 EELPHQQVAEMF-DIPLGTVKSRLRLAVEKL 185 (194)
T ss_pred cCCCHHHHHHHh-CcCHHHHHHHHHHHHHHH
Confidence 466789999999 999999999886655443
No 116
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=25.55 E-value=1.2e+02 Score=24.19 Aligned_cols=45 Identities=11% Similarity=0.072 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhHHHh
Q 046570 70 AEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRKRMA 115 (255)
Q Consensus 70 eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k~~~ 115 (255)
+-|..|+++.+.-+ ..+..||+.+ |-|...|..|-..+.+.-...
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~l-glS~~~v~~Ri~~L~~~GiI~ 53 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERV-GLSPSTVLRRIKRLEEEGVIK 53 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCcee
Confidence 45777888877766 4599999999 899999999998887765443
No 117
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoE. This protein may be called sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.
Probab=25.47 E-value=96 Score=25.48 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=22.9
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|....+||..| |-|...|+++.....++
T Consensus 153 ~~~s~~EIA~~l-gis~~tv~~~l~rar~~ 181 (190)
T TIGR02939 153 EGLSYEDIARIM-DCPVGTVRSRIFRAREA 181 (190)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455789999999 88899999988765544
No 118
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=25.21 E-value=1.7e+02 Score=24.17 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=26.3
Q ss_pred HcCCchhhhhccCCCCCHHHHHHHHHHHHHhHH
Q 046570 81 VHGNKWATIARSLPGRTDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 81 ~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~ 113 (255)
..|-...+||..| |-+...|+.|...-+.+-.
T Consensus 141 ~~g~s~~EIA~~l-gis~~tVk~~l~rAl~~~~ 172 (178)
T PRK12529 141 LDGMKQKDIAQAL-DIALPTVKKYIHQAYVTCL 172 (178)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3566899999999 9999999999887666543
No 119
>PRK12524 RNA polymerase sigma factor; Provisional
Probab=24.68 E-value=1.4e+02 Score=25.12 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=24.3
Q ss_pred HcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 81 VHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 81 ~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
..|-.+.+||..| |-+...|+++...-.++-
T Consensus 150 ~~g~s~~eIA~~l-gis~~tV~~~l~Ra~~~L 180 (196)
T PRK12524 150 IEGLSNPEIAEVM-EIGVEAVESLTARGKRAL 180 (196)
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3566899999999 899999999887655443
No 120
>PRK09642 RNA polymerase sigma factor SigW; Reviewed
Probab=24.28 E-value=1.5e+02 Score=23.73 Aligned_cols=29 Identities=7% Similarity=0.011 Sum_probs=23.3
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|-.-.+||..| |-+...|++|.....++
T Consensus 121 ~g~s~~EIA~~l-gis~~tV~~~l~Rar~~ 149 (160)
T PRK09642 121 EEKSYQEIALQE-KIEVKTVEMKLYRARKW 149 (160)
T ss_pred hCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466789999999 99999999988665443
No 121
>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Probab=23.94 E-value=1.4e+02 Score=24.21 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=22.7
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|-....||..+ |-|...|+++....+++
T Consensus 134 ~g~s~~eiA~~l-gis~~tv~~~l~Ra~~~ 162 (169)
T TIGR02954 134 HDLTIKEIAEVM-NKPEGTVKTYLHRALKK 162 (169)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 455788999998 78999999988765544
No 122
>TIGR02948 SigW_bacill RNA polymerase sigma-W factor. This sigma factor is restricted to certain lineages of the order Bacillales.
Probab=23.69 E-value=1.3e+02 Score=24.67 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=22.1
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|....+||..| |-+...|+++.....++
T Consensus 151 ~g~s~~eIA~~l-gis~~~v~~~l~Rar~~ 179 (187)
T TIGR02948 151 EDLSLKEISEIL-DLPVGTVKTRIHRGREA 179 (187)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 355788999998 88999999888655443
No 123
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=23.67 E-value=1.5e+02 Score=24.57 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=23.7
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|-....||..| |-|...|++++....++
T Consensus 146 ~~~s~~eIA~~l-gis~~tV~~~l~Rar~~ 174 (189)
T PRK12515 146 HEKSVEEVGEIV-GIPESTVKTRMFYARKK 174 (189)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 566799999999 88999999998765443
No 124
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=23.62 E-value=1.5e+02 Score=24.36 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=23.5
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|-...+||..| |-+...|+.++...+++
T Consensus 146 ~g~s~~eIA~~l-~is~~tV~~~l~ra~~~ 174 (184)
T PRK12512 146 EGASIKETAAKL-SMSEGAVRVALHRGLAA 174 (184)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 466789999999 99999999988765544
No 125
>PRK09648 RNA polymerase sigma factor SigD; Reviewed
Probab=23.55 E-value=1.5e+02 Score=24.49 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=23.2
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|....+||..| |-+...|+.+...-+++
T Consensus 154 ~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~ 182 (189)
T PRK09648 154 VGLSAEETAEAV-GSTPGAVRVAQHRALAR 182 (189)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 466799999999 88899999988665443
No 126
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=22.98 E-value=1.4e+02 Score=24.81 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=22.5
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|-....||..+ |-+...|++|+....++
T Consensus 153 ~g~s~~eIA~~l-gis~~tv~~~l~Rar~~ 181 (193)
T PRK11923 153 DGLSYEDIASVM-QCPVGTVRSRIFRAREA 181 (193)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 355688999998 88899999988765443
No 127
>PRK12530 RNA polymerase sigma factor; Provisional
Probab=22.93 E-value=1.5e+02 Score=24.72 Aligned_cols=28 Identities=4% Similarity=-0.130 Sum_probs=23.2
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
.|-...+||..| |-+...|+.|...-.+
T Consensus 149 ~g~s~~EIA~~l-gis~~tVk~~l~RAr~ 176 (189)
T PRK12530 149 LELSSEQICQEC-DISTSNLHVLLYRARL 176 (189)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 456799999999 9999999998765543
No 128
>PRK05602 RNA polymerase sigma factor; Reviewed
Probab=22.61 E-value=2.3e+02 Score=23.31 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=22.2
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|-...+||..| |-+...|+++.+..+++
T Consensus 143 ~g~s~~EIA~~l-gis~~tV~~~l~Rar~~ 171 (186)
T PRK05602 143 QGLSNIEAAAVM-DISVDALESLLARGRRA 171 (186)
T ss_pred cCCCHHHHHHHh-CcCHHHHHHHHHHHHHH
Confidence 456788889888 88888998887665443
No 129
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=22.61 E-value=1.6e+02 Score=23.81 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=23.3
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|-.-.+||..| |.+...|+.|...-+++
T Consensus 133 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 161 (173)
T PRK09645 133 RGWSTAQIAADL-GIPEGTVKSRLHYALRA 161 (173)
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456789999999 99999999998765544
No 130
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=22.01 E-value=1.7e+02 Score=24.46 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=37.8
Q ss_pred CCCCChhhHHHHHHHHHHcCCchhhhhccCC----CCCHHHHHHHHHHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLP----GRTDNAIKNHWNST 108 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~p----gRT~~qcknRw~~l 108 (255)
...-|+.|..-|..++.+||.++..++...- -.|+.||+.+...+
T Consensus 114 ~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 114 PRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 4578889999999999999999999988632 58999999887654
No 131
>PRK12536 RNA polymerase sigma factor; Provisional
Probab=21.37 E-value=2.1e+02 Score=23.55 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=24.4
Q ss_pred HcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 81 VHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 81 ~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
..|-...+||..| |.+...|+++....+++
T Consensus 143 ~~g~s~~EIA~~l-~is~~tV~~~l~rar~~ 172 (181)
T PRK12536 143 LEGLSVAETAQLT-GLSESAVKVGIHRGLKA 172 (181)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4566899999999 99999999988765443
No 132
>PRK06759 RNA polymerase factor sigma-70; Validated
Probab=20.74 E-value=2e+02 Score=22.72 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=22.0
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|-...+||..+ |-+...|+++....+++
T Consensus 121 ~~~s~~EIA~~l-~is~~tV~~~~~ra~~~ 149 (154)
T PRK06759 121 VGKTMGEIALET-EMTYYQVRWIYRQALEK 149 (154)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 445688899988 88999998887665443
No 133
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=20.58 E-value=89 Score=20.27 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=18.0
Q ss_pred CCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHH
Q 046570 66 PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKN 103 (255)
Q Consensus 66 ~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qckn 103 (255)
.+|.+|-..|..+ ..-|..=.+||..| ||+...|.+
T Consensus 4 ~Lt~~eR~~I~~l-~~~G~s~~~IA~~l-g~s~sTV~r 39 (44)
T PF13936_consen 4 HLTPEERNQIEAL-LEQGMSIREIAKRL-GRSRSTVSR 39 (44)
T ss_dssp --------HHHHH-HCS---HHHHHHHT-T--HHHHHH
T ss_pred chhhhHHHHHHHH-HHcCCCHHHHHHHH-CcCcHHHHH
Confidence 4677766666655 46677789999999 999988865
No 134
>PRK00118 putative DNA-binding protein; Validated
Probab=20.51 E-value=2.1e+02 Score=22.48 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 69 PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 69 ~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
++.+..++.+....|-....||..+ |-|...|+.+.....+
T Consensus 19 ~ekqRevl~L~y~eg~S~~EIAe~l-GIS~~TV~r~L~RArk 59 (104)
T PRK00118 19 TEKQRNYMELYYLDDYSLGEIAEEF-NVSRQAVYDNIKRTEK 59 (104)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 4455666777777888999999999 9999999888765443
No 135
>PRK12528 RNA polymerase sigma factor; Provisional
Probab=20.40 E-value=2e+02 Score=22.98 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=24.2
Q ss_pred HcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 81 VHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 81 ~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
-.|-...+||..+ |-+...|+.|...-.++
T Consensus 127 ~~g~s~~EIA~~l-~is~~tV~~~l~ra~~~ 156 (161)
T PRK12528 127 VDGLGYGEIATEL-GISLATVKRYLNKAAMR 156 (161)
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3566799999999 89999999988766554
No 136
>PRK09651 RNA polymerase sigma factor FecI; Provisional
Probab=20.39 E-value=1.9e+02 Score=23.72 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=25.6
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~~ 114 (255)
.|-...+||..+ |-+...|++|...-++.-..
T Consensus 134 ~g~s~~EIA~~l-gis~~tV~~~l~Ra~~~~~~ 165 (172)
T PRK09651 134 DGLTYSEIAHKL-GVSVSSVKKYVAKATEHCLL 165 (172)
T ss_pred cCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHH
Confidence 455789999999 99999999998776665443
No 137
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=20.30 E-value=1.1e+02 Score=22.84 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCchhhhhccCCCCCHHHHHH
Q 046570 72 DSIIIQAHAVHGNKWATIARSLPGRTDNAIKN 103 (255)
Q Consensus 72 D~~Ll~~v~~~G~~W~~IA~~~pgRT~~qckn 103 (255)
+..|-......|.+|..+|+.| |=+...|..
T Consensus 4 ~~~l~~ia~~LG~dWk~LAr~L-g~se~dI~~ 34 (84)
T cd08804 4 EERLAVIADHLGFSWTELAREL-DFTEEQIHQ 34 (84)
T ss_pred hhHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3456667788999999999998 556555543
No 138
>TIGR02952 Sig70_famx2 RNA polymerase sigma-70 factor, TIGR02952 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in a limited number of Gram-positive bacterial lineages.
Probab=20.22 E-value=1.9e+02 Score=23.07 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=22.1
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.|-...+||..| |-+...|+++.....++
T Consensus 137 ~g~s~~eIA~~l-~is~~tv~~~l~ra~~~ 165 (170)
T TIGR02952 137 QNLPIAEVARIL-GKTEGAVKILQFRAIKK 165 (170)
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 356788999998 88899998887655443
No 139
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=20.02 E-value=2.1e+02 Score=23.15 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=23.6
Q ss_pred HcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 81 VHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 81 ~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
..|-...+||..+ |-+...|+++.....++
T Consensus 126 ~~g~s~~eIA~~l-gis~~tV~~~l~Rar~~ 155 (164)
T PRK12547 126 ASGFSYEDAAAIC-GCAVGTIKSRVSRARNR 155 (164)
T ss_pred HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3556789999999 88999999988765544
Done!