Query 046570
Match_columns 255
No_of_seqs 190 out of 1418
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 23:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 9.3E-35 3.2E-39 227.1 10.2 104 9-112 1-104 (105)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 1.4E-34 4.7E-39 233.9 8.7 111 2-112 17-127 (128)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.1E-34 3.7E-39 228.0 7.9 104 12-115 1-104 (107)
4 3zqc_A MYB3; transcription-DNA 100.0 1.4E-33 4.7E-38 229.1 10.2 104 11-114 1-104 (131)
5 3osg_A MYB21; transcription-DN 100.0 3.3E-33 1.1E-37 225.6 10.1 105 7-112 6-110 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 2.2E-32 7.6E-37 228.3 9.5 110 3-112 49-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 5.1E-30 1.7E-34 214.0 5.4 104 9-112 3-107 (159)
8 2dim_A Cell division cycle 5-l 99.9 7.4E-23 2.5E-27 149.0 4.1 68 5-72 2-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 3.4E-21 1.2E-25 155.2 5.3 74 38-111 1-75 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 2.1E-19 7.3E-24 158.0 7.2 105 8-112 4-200 (246)
11 2d9a_A B-MYB, MYB-related prot 99.7 1.7E-18 5.9E-23 122.1 3.9 58 6-63 2-59 (60)
12 2juh_A Telomere binding protei 99.7 2.1E-18 7.1E-23 138.2 3.6 84 5-88 10-103 (121)
13 1gvd_A MYB proto-oncogene prot 99.7 4.5E-18 1.5E-22 116.7 4.1 52 10-61 1-52 (52)
14 1ity_A TRF1; helix-turn-helix, 99.7 2.9E-18 9.9E-23 124.4 3.3 65 4-68 2-68 (69)
15 2llk_A Cyclin-D-binding MYB-li 99.7 4.5E-18 1.5E-22 125.1 4.0 60 50-110 9-68 (73)
16 1guu_A C-MYB, MYB proto-oncoge 99.7 6.5E-18 2.2E-22 115.8 2.8 52 10-61 1-52 (52)
17 2roh_A RTBP1, telomere binding 99.7 2.5E-17 8.7E-22 132.0 4.7 79 7-85 26-114 (122)
18 2din_A Cell division cycle 5-l 99.7 5.4E-17 1.9E-21 116.6 5.9 59 57-116 2-60 (66)
19 2cu7_A KIAA1915 protein; nucle 99.7 6.4E-17 2.2E-21 118.2 6.3 58 58-115 3-60 (72)
20 3sjm_A Telomeric repeat-bindin 99.7 1.6E-17 5.6E-22 119.1 1.9 57 7-63 6-64 (64)
21 2din_A Cell division cycle 5-l 99.6 1.6E-17 5.3E-22 119.4 -0.3 60 4-65 1-60 (66)
22 1x41_A Transcriptional adaptor 99.6 7E-17 2.4E-21 114.1 2.9 56 7-62 3-58 (60)
23 2d9a_A B-MYB, MYB-related prot 99.6 2.8E-16 9.7E-21 110.7 3.9 54 59-112 3-57 (60)
24 1guu_A C-MYB, MYB proto-oncoge 99.6 8E-16 2.7E-20 105.3 5.5 50 62-111 1-51 (52)
25 1w0t_A Telomeric repeat bindin 99.6 1.8E-16 6E-21 109.2 2.2 49 11-59 1-51 (53)
26 2elk_A SPCC24B10.08C protein; 99.6 2.3E-16 7.9E-21 110.8 2.7 54 5-58 2-56 (58)
27 2cu7_A KIAA1915 protein; nucle 99.6 1.7E-16 5.7E-21 116.0 0.6 63 5-69 2-64 (72)
28 1gvd_A MYB proto-oncogene prot 99.6 1.5E-15 5.2E-20 104.0 5.2 50 62-111 1-51 (52)
29 1w0t_A Telomeric repeat bindin 99.6 2E-15 6.7E-20 103.9 5.5 49 63-111 1-52 (53)
30 1x41_A Transcriptional adaptor 99.6 3.4E-15 1.2E-19 105.4 5.3 52 59-110 3-55 (60)
31 1ity_A TRF1; helix-turn-helix, 99.5 7E-15 2.4E-19 106.4 6.6 58 57-114 3-63 (69)
32 2yum_A ZZZ3 protein, zinc fing 99.5 6E-16 2.1E-20 113.7 1.0 61 7-67 3-68 (75)
33 2llk_A Cyclin-D-binding MYB-li 99.5 2.2E-15 7.7E-20 110.6 2.8 59 2-63 13-71 (73)
34 2dim_A Cell division cycle 5-l 99.5 7.2E-15 2.5E-19 106.6 5.3 56 59-114 4-60 (70)
35 3zqc_A MYB3; transcription-DNA 99.5 3.2E-15 1.1E-19 120.8 3.2 85 4-93 46-130 (131)
36 2yum_A ZZZ3 protein, zinc fing 99.5 1.1E-14 3.7E-19 106.9 4.9 56 59-114 3-64 (75)
37 2elk_A SPCC24B10.08C protein; 99.5 2.1E-14 7.3E-19 100.7 5.6 50 60-109 5-56 (58)
38 3sjm_A Telomeric repeat-bindin 99.5 2.8E-14 9.6E-19 102.2 5.9 51 62-112 9-62 (64)
39 2ltp_A Nuclear receptor corepr 99.2 2.6E-15 9E-20 114.1 0.0 59 57-115 9-67 (89)
40 2aje_A Telomere repeat-binding 99.4 6.3E-14 2.1E-18 109.6 5.6 78 6-83 7-94 (105)
41 1gv2_A C-MYB, MYB proto-oncoge 99.4 4.3E-14 1.5E-18 109.7 3.6 57 4-61 48-104 (105)
42 2ckx_A NGTRF1, telomere bindin 99.4 6E-14 2E-18 105.4 4.2 68 13-80 1-78 (83)
43 2ltp_A Nuclear receptor corepr 99.1 1.7E-14 5.9E-19 109.6 0.0 57 3-60 7-63 (89)
44 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.7E-13 9.2E-18 99.5 5.8 51 60-110 14-68 (73)
45 2yus_A SWI/SNF-related matrix- 99.4 1.1E-13 3.8E-18 103.0 2.9 50 7-57 13-62 (79)
46 2cqr_A RSGI RUH-043, DNAJ homo 99.4 9.7E-14 3.3E-18 101.9 1.5 53 7-59 13-68 (73)
47 2k9n_A MYB24; R2R3 domain, DNA 99.3 1E-13 3.5E-18 108.2 0.5 56 4-60 45-100 (107)
48 2yus_A SWI/SNF-related matrix- 99.3 5E-13 1.7E-17 99.5 4.0 48 61-108 15-62 (79)
49 3osg_A MYB21; transcription-DN 99.3 2.4E-13 8.4E-18 109.1 2.2 55 4-59 54-108 (126)
50 1x58_A Hypothetical protein 49 99.3 2.7E-12 9.3E-17 90.9 5.9 51 62-112 6-59 (62)
51 2ckx_A NGTRF1, telomere bindin 99.3 5.2E-12 1.8E-16 94.8 6.0 49 65-113 1-54 (83)
52 2aje_A Telomere repeat-binding 99.2 1.2E-11 4.2E-16 96.6 6.7 54 59-112 8-66 (105)
53 2juh_A Telomere binding protei 99.2 9E-12 3.1E-16 99.6 5.6 56 57-112 10-70 (121)
54 2cjj_A Radialis; plant develop 99.2 2.6E-11 8.9E-16 92.8 6.9 53 63-115 7-63 (93)
55 1ign_A Protein (RAP1); RAP1,ye 99.2 9.3E-12 3.2E-16 109.6 4.6 55 60-114 4-64 (246)
56 2roh_A RTBP1, telomere binding 99.1 5.1E-11 1.8E-15 95.4 6.0 54 59-112 26-84 (122)
57 2cjj_A Radialis; plant develop 99.1 8.1E-12 2.8E-16 95.7 1.2 48 11-58 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 1.7E-10 5.7E-15 81.5 3.5 54 4-58 4-57 (61)
59 2eqr_A N-COR1, N-COR, nuclear 99.0 3.3E-10 1.1E-14 80.0 5.0 48 63-110 11-58 (61)
60 1x58_A Hypothetical protein 49 99.0 3.2E-10 1.1E-14 80.3 3.5 50 9-59 5-57 (62)
61 3hm5_A DNA methyltransferase 1 98.9 2.2E-09 7.6E-14 82.0 5.5 65 48-116 18-87 (93)
62 2xag_B REST corepressor 1; ami 98.8 1.8E-09 6.1E-14 103.8 4.1 48 65-112 381-428 (482)
63 2cqq_A RSGI RUH-037, DNAJ homo 98.8 6.8E-09 2.3E-13 75.8 5.5 50 61-111 5-58 (72)
64 2iw5_B Protein corest, REST co 98.7 7.4E-09 2.5E-13 90.5 5.5 51 63-113 132-182 (235)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.7 2.8E-09 9.5E-14 77.9 1.5 51 8-59 4-57 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.6 2.4E-08 8.3E-13 73.0 3.0 49 12-60 8-59 (73)
67 2iw5_B Protein corest, REST co 98.5 2.9E-08 9.8E-13 86.7 2.4 50 9-59 130-179 (235)
68 1wgx_A KIAA1903 protein; MYB D 98.5 1.1E-07 3.8E-12 69.5 5.2 49 64-112 8-60 (73)
69 1fex_A TRF2-interacting telome 98.4 4.9E-08 1.7E-12 68.5 1.8 48 12-59 2-58 (59)
70 1fex_A TRF2-interacting telome 98.4 2.2E-07 7.4E-12 65.2 4.8 47 64-110 2-58 (59)
71 1ofc_X ISWI protein; nuclear p 98.3 1.9E-06 6.5E-11 78.5 8.3 101 12-112 110-276 (304)
72 4eef_G F-HB80.4, designed hema 98.3 2.3E-07 7.8E-12 67.6 1.5 44 12-55 20-66 (74)
73 2yqk_A Arginine-glutamic acid 98.2 2E-06 6.9E-11 60.9 6.2 49 60-108 5-54 (63)
74 2yqk_A Arginine-glutamic acid 98.2 1.4E-06 4.7E-11 61.7 4.2 51 5-56 2-53 (63)
75 4eef_G F-HB80.4, designed hema 98.1 1.2E-06 4E-11 63.8 1.9 43 64-106 20-66 (74)
76 1ug2_A 2610100B20RIK gene prod 98.0 1.8E-05 6.3E-10 59.7 7.1 48 65-112 34-84 (95)
77 2lr8_A CAsp8-associated protei 97.1 1.6E-06 5.5E-11 62.1 0.0 45 66-111 16-63 (70)
78 2crg_A Metastasis associated p 97.8 3.1E-05 1.1E-09 55.8 5.8 44 64-107 8-52 (70)
79 4a69_C Nuclear receptor corepr 97.8 3.3E-05 1.1E-09 58.8 5.3 45 64-108 43-87 (94)
80 4iej_A DNA methyltransferase 1 97.7 6E-05 2.1E-09 57.3 6.5 52 65-116 31-87 (93)
81 2crg_A Metastasis associated p 97.7 1.7E-05 6E-10 57.2 3.0 46 10-56 6-52 (70)
82 4a69_C Nuclear receptor corepr 97.7 1.9E-05 6.4E-10 60.2 3.1 44 12-56 43-86 (94)
83 2xag_B REST corepressor 1; ami 97.7 1.2E-05 4.2E-10 77.2 2.3 47 10-57 378-424 (482)
84 3hm5_A DNA methyltransferase 1 97.3 8.8E-05 3E-09 56.4 2.6 47 11-58 29-80 (93)
85 2ebi_A DNA binding protein GT- 97.1 0.00028 9.5E-09 52.3 3.2 50 64-113 4-67 (86)
86 2y9y_A Imitation switch protei 97.1 0.0015 5.1E-08 60.9 8.6 99 13-112 124-292 (374)
87 4b4c_A Chromodomain-helicase-D 97.0 0.00051 1.8E-08 58.5 4.7 104 8-111 3-196 (211)
88 2lr8_A CAsp8-associated protei 95.9 0.00015 5E-09 52.0 0.0 45 14-59 16-62 (70)
89 2ebi_A DNA binding protein GT- 96.8 0.00016 5.4E-09 53.7 -0.5 48 10-57 2-62 (86)
90 1ug2_A 2610100B20RIK gene prod 96.2 0.0022 7.4E-08 48.4 2.4 45 13-57 34-80 (95)
91 1irz_A ARR10-B; helix-turn-hel 95.4 0.029 9.8E-07 39.6 5.3 47 63-109 6-57 (64)
92 4iej_A DNA methyltransferase 1 93.4 0.043 1.5E-06 41.5 2.7 46 11-57 29-79 (93)
93 1ofc_X ISWI protein; nuclear p 92.9 0.16 5.6E-06 46.0 6.2 48 64-111 110-158 (304)
94 1irz_A ARR10-B; helix-turn-hel 91.8 0.085 2.9E-06 37.2 2.3 49 8-56 3-55 (64)
95 4b4c_A Chromodomain-helicase-D 90.4 0.3 1E-05 41.1 4.8 50 63-112 6-60 (211)
96 2xb0_X Chromo domain-containin 90.1 0.18 6.2E-06 45.0 3.4 28 13-40 169-196 (270)
97 2xb0_X Chromo domain-containin 86.8 0.37 1.3E-05 42.9 3.1 27 66-92 170-197 (270)
98 2y9y_A Imitation switch protei 73.0 3.4 0.00012 38.4 4.6 44 11-54 227-285 (374)
99 2li6_A SWI/SNF chromatin-remod 65.7 4 0.00014 31.4 2.9 39 74-112 53-99 (116)
100 3cz6_A DNA-binding protein RAP 64.5 5.8 0.0002 32.8 3.7 30 7-39 109-146 (168)
101 2lm1_A Lysine-specific demethy 62.1 9.7 0.00033 28.5 4.4 39 74-112 48-98 (107)
102 2jrz_A Histone demethylase jar 60.5 8.4 0.00029 29.6 3.9 39 74-112 44-94 (117)
103 2eqy_A RBP2 like, jumonji, at 60.1 30 0.001 26.5 7.1 41 74-114 46-98 (122)
104 2o8x_A Probable RNA polymerase 58.6 12 0.00042 24.6 4.1 43 67-111 16-58 (70)
105 1kkx_A Transcription regulator 56.9 6.7 0.00023 30.6 2.7 41 74-114 52-100 (123)
106 2cxy_A BAF250B subunit, HBAF25 55.6 12 0.00043 28.9 4.1 40 74-113 55-106 (125)
107 1ku3_A Sigma factor SIGA; heli 53.5 16 0.00056 24.7 4.1 41 71-112 14-58 (73)
108 1c20_A DEAD ringer protein; DN 52.1 15 0.00052 28.4 4.1 41 73-113 55-108 (128)
109 2p7v_B Sigma-70, RNA polymeras 46.6 19 0.00064 24.0 3.4 30 82-112 24-53 (68)
110 2kk0_A AT-rich interactive dom 45.2 21 0.00072 28.4 4.0 40 74-113 68-120 (145)
111 2rq5_A Protein jumonji; develo 43.9 17 0.00058 28.2 3.2 80 7-111 2-96 (121)
112 1ig6_A MRF-2, modulator recogn 42.9 9.8 0.00033 28.6 1.6 39 74-112 37-88 (107)
113 2jxj_A Histone demethylase jar 42.8 9.2 0.00031 28.0 1.4 38 74-111 40-89 (96)
114 3hug_A RNA polymerase sigma fa 39.3 34 0.0012 24.1 4.1 41 71-112 41-81 (92)
115 2p1m_A SKP1-like protein 1A; F 35.7 18 0.00062 28.9 2.2 35 36-77 119-153 (160)
116 1x3u_A Transcriptional regulat 33.4 64 0.0022 21.5 4.6 42 67-111 17-58 (79)
117 1tty_A Sigma-A, RNA polymerase 33.2 51 0.0017 23.1 4.1 40 72-112 23-66 (87)
118 2q1z_A RPOE, ECF SIGE; ECF sig 33.1 44 0.0015 25.9 4.1 30 82-112 150-179 (184)
119 1or7_A Sigma-24, RNA polymeras 30.2 66 0.0023 25.0 4.8 30 82-112 155-184 (194)
120 3i4p_A Transcriptional regulat 30.1 40 0.0014 26.5 3.4 43 70-113 3-46 (162)
121 3ulq_B Transcriptional regulat 30.0 75 0.0026 22.6 4.6 46 64-112 27-72 (90)
122 1xsv_A Hypothetical UPF0122 pr 28.2 85 0.0029 23.3 4.8 40 71-111 29-68 (113)
123 3c57_A Two component transcrip 27.8 73 0.0025 22.7 4.3 44 66-112 27-70 (95)
124 1fse_A GERE; helix-turn-helix 27.7 69 0.0024 20.9 3.9 44 65-111 10-53 (74)
125 3e7l_A Transcriptional regulat 27.0 68 0.0023 21.1 3.7 33 70-103 19-51 (63)
126 2jpc_A SSRB; DNA binding prote 26.6 1.1E+02 0.0037 19.2 4.6 38 73-112 4-41 (61)
127 1ntc_A Protein (nitrogen regul 25.9 96 0.0033 22.0 4.6 35 69-104 50-84 (91)
128 2k27_A Paired box protein PAX- 25.3 1.7E+02 0.0059 22.3 6.4 66 13-82 24-99 (159)
129 2rnj_A Response regulator prot 24.4 83 0.0028 22.0 4.0 43 66-111 29-71 (91)
130 1je8_A Nitrate/nitrite respons 24.4 82 0.0028 21.7 3.9 43 66-111 21-63 (82)
131 2dbb_A Putative HTH-type trans 24.2 1.1E+02 0.0037 23.3 4.9 43 70-113 9-52 (151)
132 3mzy_A RNA polymerase sigma-H 23.9 77 0.0026 23.6 3.9 31 81-112 122-152 (164)
133 1rp3_A RNA polymerase sigma fa 23.3 1E+02 0.0034 24.7 4.8 31 81-112 201-231 (239)
134 2yqf_A Ankyrin-1; death domain 20.9 1E+02 0.0034 22.9 4.0 33 68-101 14-46 (111)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=9.3e-35 Score=227.08 Aligned_cols=104 Identities=58% Similarity=1.048 Sum_probs=99.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhh
Q 046570 9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWAT 88 (255)
Q Consensus 9 ~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~ 88 (255)
.+++|+||++||++|+.+|.+||..+|..||..|||||+.||+.||.++|+|.+++++||++||.+|++++.+||++|..
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 46899999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCHHHHHHHHHHHHHhH
Q 046570 89 IARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 89 IA~~~pgRT~~qcknRw~~llr~k 112 (255)
||.+|||||+++|++||+.+++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999876
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.4e-34 Score=233.87 Aligned_cols=111 Identities=51% Similarity=0.911 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHH
Q 046570 2 NSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAV 81 (255)
Q Consensus 2 ~sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~ 81 (255)
..++|+|.+++|+||++||++|+.+|..||..+|..||.+|||||+.||+.||.++|+|.+++++||++||.+|++++.+
T Consensus 17 w~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~ 96 (128)
T 1h8a_C 17 WQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 96 (128)
T ss_dssp -----CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHH
Confidence 34679999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
||++|..||.+|||||+++|++||+.+++++
T Consensus 97 ~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 97 LGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998875
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.1e-34 Score=228.00 Aligned_cols=104 Identities=34% Similarity=0.634 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhhhhc
Q 046570 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIAR 91 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~ 91 (255)
||+||++||++|+.+|..||..+|..||..|||||+.||++||.++|+|.+++++||++||.+|+++|.+||++|..||.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHh
Q 046570 92 SLPGRTDNAIKNHWNSTLRRKRMA 115 (255)
Q Consensus 92 ~~pgRT~~qcknRw~~llr~k~~~ 115 (255)
+|||||+++|++||+.++++....
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHh
Confidence 999999999999999999886543
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1.4e-33 Score=229.10 Aligned_cols=104 Identities=44% Similarity=0.853 Sum_probs=100.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhhhh
Q 046570 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIA 90 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA 90 (255)
.||+||++||++|+.+|..||..+|..||..|||||+.||++||.++|+|.+++++||++||.+|+++|.+||++|+.||
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 48999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHHH
Q 046570 91 RSLPGRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 91 ~~~pgRT~~qcknRw~~llr~k~~ 114 (255)
.+|||||+++|++||+.+++++..
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988754
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=3.3e-33 Score=225.55 Aligned_cols=105 Identities=39% Similarity=0.780 Sum_probs=101.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCch
Q 046570 7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKW 86 (255)
Q Consensus 7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W 86 (255)
.+..++|+||++||++|+.+|..||. +|..||..||||++.||++||.++|+|.+++++||++||++|+++|.+||++|
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 46789999999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 87 ATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 87 ~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
..||..|||||+++|++||..++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988765
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=2.2e-32 Score=228.34 Aligned_cols=110 Identities=55% Similarity=0.991 Sum_probs=106.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHc
Q 046570 3 SNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVH 82 (255)
Q Consensus 3 sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~ 82 (255)
-++|+|.+++|+||++||.+|+.+|..||+.+|..||.+|||||+.||+.||.++|+|.+++++||++||.+|++++.+|
T Consensus 49 ~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~ 128 (159)
T 1h89_C 49 QKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 128 (159)
T ss_dssp HTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred HHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHH
Confidence 36799999999999999999999999999878999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 83 GNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 83 G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
|++|+.||++|||||+++|++||+.+++++
T Consensus 129 g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 129 GNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=5.1e-30 Score=214.03 Aligned_cols=104 Identities=33% Similarity=0.683 Sum_probs=61.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCC-chh
Q 046570 9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGN-KWA 87 (255)
Q Consensus 9 ~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~ 87 (255)
.+.+|+||++||++|+++|.+||..+|..||..||+|++.||+.||.++|+|.+++++||++||.+|+.+|..||. +|.
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence 4679999999999999999999988999999999999999999999999999999999999999999999999996 699
Q ss_pred hhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 88 TIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 88 ~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
.||..|||||+.||++||..++...
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 9999999999999999999987643
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7.4e-23 Score=149.04 Aligned_cols=68 Identities=28% Similarity=0.561 Sum_probs=65.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhH
Q 046570 5 SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAED 72 (255)
Q Consensus 5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED 72 (255)
+..+.+++|+||++||++|+.+|.+||..+|..||.+|++||+.||+.||.++|+|.+++++||++||
T Consensus 2 ss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 46788999999999999999999999988999999999999999999999999999999999999998
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.82 E-value=3.4e-21 Score=155.23 Aligned_cols=74 Identities=28% Similarity=0.638 Sum_probs=50.6
Q ss_pred hccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCC-chhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 38 ISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGN-KWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 38 IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
||..|||||+.||+.||.++|+|.+++++||++||++|+++|.+||. +|..||..|||||+.||++||..++..
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999999999999996 699999999999999999999988764
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.78 E-value=2.1e-19 Score=158.02 Aligned_cols=105 Identities=25% Similarity=0.369 Sum_probs=92.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC-----hhhhccCCCCCCcccccccccccCCCCcc-------------------
Q 046570 8 NDRIKGSWSPQEDATLIKLVEQHGPRN-----WSMISSGIPGRSGKSCRLRWCNQLSPTVQ------------------- 63 (255)
Q Consensus 8 ~~~~kg~WT~eED~~L~~lv~~~G~~~-----W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~------------------- 63 (255)
+.+.+++||++||+.|+++|.+||... |..||.+|||||+.||+.||..+|.+.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 567899999999999999999998532 99999999999999999999999999986
Q ss_pred ----------CCCCChhhHHHHHHHHHH-c--------------------------------------------------
Q 046570 64 ----------HRPFTPAEDSIIIQAHAV-H-------------------------------------------------- 82 (255)
Q Consensus 64 ----------k~~WT~eED~~Ll~~v~~-~-------------------------------------------------- 82 (255)
+..||.+||-.|+..+++ |
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 789999999999999876 1
Q ss_pred ---CC----chhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 83 ---GN----KWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 83 ---G~----~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
|. .|..||..+|+||.+++|+||..+++..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999998776
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.7e-18 Score=122.15 Aligned_cols=58 Identities=31% Similarity=0.661 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCcc
Q 046570 6 NNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQ 63 (255)
Q Consensus 6 l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~ 63 (255)
.+|.+++++||++||++|+++|.+||..+|..||.+||+||+.||+.||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 3578999999999999999999999988999999999999999999999999999875
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.71 E-value=2.1e-18 Score=138.16 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=78.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccC----CCCCCcccccccccccCC-----CCccCC-CCChhhHHH
Q 046570 5 SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSG----IPGRSGKSCRLRWCNQLS-----PTVQHR-PFTPAEDSI 74 (255)
Q Consensus 5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~----lpgRt~~qCr~Rw~~~L~-----p~l~k~-~WT~eED~~ 74 (255)
-+.+.+++++||++||+.|+.+|.+||.++|..|+.. |++||+.+|++||+++++ |.++++ +|+++++.+
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 3567899999999999999999999998899999987 499999999999999998 999998 999999999
Q ss_pred HHHHHHHcCCchhh
Q 046570 75 IIQAHAVHGNKWAT 88 (255)
Q Consensus 75 Ll~~v~~~G~~W~~ 88 (255)
|+.++..+|++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999987
No 13
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.71 E-value=4.5e-18 Score=116.70 Aligned_cols=52 Identities=52% Similarity=1.059 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCC
Q 046570 10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT 61 (255)
Q Consensus 10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~ 61 (255)
+++|+||++||.+|+.+|.+||..+|..||..|+|||+.||+.||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999878999999999999999999999999984
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.71 E-value=2.9e-18 Score=124.37 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCC--CCCcccccccccccCCCCccCCCCC
Q 046570 4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP--GRSGKSCRLRWCNQLSPTVQHRPFT 68 (255)
Q Consensus 4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp--gRt~~qCr~Rw~~~L~p~l~k~~WT 68 (255)
+...+.+++++||++||.+|+.+|.+||.++|..||..|+ |||+.||++||.++|+|.+.++..+
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 5667899999999999999999999999889999999999 9999999999999999999988764
No 15
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.70 E-value=4.5e-18 Score=125.08 Aligned_cols=60 Identities=23% Similarity=0.317 Sum_probs=47.8
Q ss_pred ccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 50 CRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 50 Cr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
..-||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999 9999999999987543
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.69 E-value=6.5e-18 Score=115.80 Aligned_cols=52 Identities=38% Similarity=0.779 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCC
Q 046570 10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT 61 (255)
Q Consensus 10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~ 61 (255)
+++|+||++||.+|+.+|.+||..+|..||..|||||+.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999779999999999999999999999999984
No 17
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.67 E-value=2.5e-17 Score=132.03 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=73.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccC----CCCCCcccccccccccC-----CCCccCCCCChhh-HHHHH
Q 046570 7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSG----IPGRSGKSCRLRWCNQL-----SPTVQHRPFTPAE-DSIII 76 (255)
Q Consensus 7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~----lpgRt~~qCr~Rw~~~L-----~p~l~k~~WT~eE-D~~Ll 76 (255)
...+++++||++||+.|+.+|.+||.++|..|+.. |++||+.||++||++++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 45788999999999999999999998899999985 48999999999999999 8999999999999 89999
Q ss_pred HHHHHcCCc
Q 046570 77 QAHAVHGNK 85 (255)
Q Consensus 77 ~~v~~~G~~ 85 (255)
.++..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999974
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5.4e-17 Score=116.57 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=56.0
Q ss_pred cCCCCccCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhHHHhh
Q 046570 57 QLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMAE 116 (255)
Q Consensus 57 ~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~~~~ 116 (255)
+|+|.+++++||++||++|++++..||.+|..||. |+|||+.||++||..++++.....
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 69999999999999999999999999999999999 889999999999999999887654
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=6.4e-17 Score=118.23 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=54.7
Q ss_pred CCCCccCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhHHHh
Q 046570 58 LSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMA 115 (255)
Q Consensus 58 L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~~~ 115 (255)
++|.+++++||++||++|++++.+||.+|..||.+|||||++||++||+.++++....
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999887554
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.66 E-value=1.6e-17 Score=119.09 Aligned_cols=57 Identities=25% Similarity=0.396 Sum_probs=49.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCC--CCCcccccccccccCCCCcc
Q 046570 7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP--GRSGKSCRLRWCNQLSPTVQ 63 (255)
Q Consensus 7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp--gRt~~qCr~Rw~~~L~p~l~ 63 (255)
.+..+|++||+|||++|+++|.+||+.+|..||..+| +||+.||++||+++++|.++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 6 TNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 3456899999999999999999999889999999865 99999999999999988764
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-17 Score=119.42 Aligned_cols=60 Identities=25% Similarity=0.454 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCC
Q 046570 4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHR 65 (255)
Q Consensus 4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~ 65 (255)
.+|+|.+++++||++||++|+.+|..||. +|..||. |+|||+.||+.||.++|+|.++++
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 47999999999999999999999999995 8999999 899999999999999999877664
No 22
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=7e-17 Score=114.09 Aligned_cols=56 Identities=20% Similarity=0.413 Sum_probs=52.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCc
Q 046570 7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTV 62 (255)
Q Consensus 7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l 62 (255)
.+.+.+++||++||.+|+++|.+||.++|..||.+||+||+.||+.||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 36789999999999999999999998899999999999999999999999998653
No 23
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=2.8e-16 Score=110.69 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=50.5
Q ss_pred CCCccCCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 59 SPTVQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 59 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
+|.+++++||++||++|+++|.+|| ++|..||.+|||||+.||++||..+|+..
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 5788999999999999999999999 59999999999999999999999988754
No 24
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=8e-16 Score=105.30 Aligned_cols=50 Identities=28% Similarity=0.527 Sum_probs=45.9
Q ss_pred ccCCCCChhhHHHHHHHHHHcCC-chhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 62 VQHRPFTPAEDSIIIQAHAVHGN-KWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 62 l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
+++++||++||.+|+++|.+||. +|..||..|||||+.||++||..+|+.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 899999999999999999999998863
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=1.8e-16 Score=109.23 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhccCCC--CCCcccccccccccCC
Q 046570 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP--GRSGKSCRLRWCNQLS 59 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp--gRt~~qCr~Rw~~~L~ 59 (255)
++|+||++||++|+.+|.+||+++|..||..|| |||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 589999999999999999999889999999999 9999999999998875
No 26
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.60 E-value=2.3e-16 Score=110.80 Aligned_cols=54 Identities=24% Similarity=0.494 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCC-CCCcccccccccccC
Q 046570 5 SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQL 58 (255)
Q Consensus 5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lp-gRt~~qCr~Rw~~~L 58 (255)
+++..+.+++||++||.+|+++|.+||..+|..||.+|+ +||+.||+.||.+++
T Consensus 2 ~~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 2 SSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 345567799999999999999999999889999999999 999999999998865
No 27
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.58 E-value=1.7e-16 Score=116.02 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCCh
Q 046570 5 SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTP 69 (255)
Q Consensus 5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~ 69 (255)
+++|.+++|+||++||++|+.+|..||. +|..||.+|||||+.||+.||.++|.+.++. .+++
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~ 64 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDK 64 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTC
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 6789999999999999999999999995 8999999999999999999999998876655 4443
No 28
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.58 E-value=1.5e-15 Score=103.97 Aligned_cols=50 Identities=28% Similarity=0.598 Sum_probs=46.5
Q ss_pred ccCCCCChhhHHHHHHHHHHcCC-chhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 62 VQHRPFTPAEDSIIIQAHAVHGN-KWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 62 l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
+++++||++||.+|+++|.+||. +|..||..|||||+.||++||..+|+.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 699999999999999999999988753
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=2e-15 Score=103.94 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=46.3
Q ss_pred cCCCCChhhHHHHHHHHHHcC-CchhhhhccCC--CCCHHHHHHHHHHHHHh
Q 046570 63 QHRPFTPAEDSIIIQAHAVHG-NKWATIARSLP--GRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 63 ~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~p--gRT~~qcknRw~~llr~ 111 (255)
++++||++||++|+++|.+|| ++|..||..|| |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 468999999999999999999 69999999999 99999999999999875
No 30
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=3.4e-15 Score=105.40 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=48.7
Q ss_pred CCCccCCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 59 SPTVQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 59 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
.+.+.+++||++||++|+++|.+|| ++|..||.+|||||+.||++||..++.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 3678899999999999999999999 799999999999999999999998875
No 31
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.55 E-value=7e-15 Score=106.44 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=52.7
Q ss_pred cCCCCccCCCCChhhHHHHHHHHHHcC-CchhhhhccCC--CCCHHHHHHHHHHHHHhHHH
Q 046570 57 QLSPTVQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLP--GRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 57 ~L~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~p--gRT~~qcknRw~~llr~k~~ 114 (255)
...+..++++||++||++|+++|.+|| ++|..||..|+ |||+.||++||..+++..+.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~ 63 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI 63 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence 345677899999999999999999999 69999999999 99999999999999987643
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6e-16 Score=113.68 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=55.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CChhhhccCCCCCCcccccccccccCCCCccCCCC
Q 046570 7 NNDRIKGSWSPQEDATLIKLVEQHGP-----RNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPF 67 (255)
Q Consensus 7 ~~~~~kg~WT~eED~~L~~lv~~~G~-----~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~W 67 (255)
.|.+.+++||++||++|+++|..||. .+|..||.+|++||+.||+.||+++|.+.++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 57889999999999999999999996 68999999999999999999999999887766543
No 33
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-15 Score=110.65 Aligned_cols=59 Identities=27% Similarity=0.445 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCcc
Q 046570 2 NSNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQ 63 (255)
Q Consensus 2 ~sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~ 63 (255)
.-|+|+|.+++|+||+|||++|+++|.+||. +|..||+.| |||+.||+.||.. |....+
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence 3578999999999999999999999999995 599999999 9999999999974 544433
No 34
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=7.2e-15 Score=106.59 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=51.7
Q ss_pred CCCccCCCCChhhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570 59 SPTVQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 59 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k~~ 114 (255)
.|.+++++||++||++|+++|.+|| ++|..||.+|||||+.||++||..+|+....
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~ 60 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK 60 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCccc
Confidence 4678899999999999999999999 7999999999999999999999999876543
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.52 E-value=3.2e-15 Score=120.82 Aligned_cols=85 Identities=25% Similarity=0.445 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcC
Q 046570 4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHG 83 (255)
Q Consensus 4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G 83 (255)
++|+|.+++|+||++||.+|+.+|..|| .+|..||.+|||||+.||+.||.++|++.+..++|+.+--.- ....+
T Consensus 46 ~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p----~~~kk 120 (131)
T 3zqc_A 46 NHLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP----DRSKK 120 (131)
T ss_dssp HHTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC----CCC--
T ss_pred hccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc----hhhhh
Confidence 5789999999999999999999999999 679999999999999999999999999999999888763110 11224
Q ss_pred CchhhhhccC
Q 046570 84 NKWATIARSL 93 (255)
Q Consensus 84 ~~W~~IA~~~ 93 (255)
.+|..|++.|
T Consensus 121 ~~~~~i~k~~ 130 (131)
T 3zqc_A 121 RKAADVPKKL 130 (131)
T ss_dssp ----------
T ss_pred hhhhhcchhc
Confidence 5688887765
No 36
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=106.93 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=51.8
Q ss_pred CCCccCCCCChhhHHHHHHHHHHcC------CchhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570 59 SPTVQHRPFTPAEDSIIIQAHAVHG------NKWATIARSLPGRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 59 ~p~l~k~~WT~eED~~Ll~~v~~~G------~~W~~IA~~~pgRT~~qcknRw~~llr~k~~ 114 (255)
+|.+.+++||++||++|++++.+|| .+|..||.+|||||..||++||++++.+...
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5788899999999999999999999 7899999999999999999999999887643
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.50 E-value=2.1e-14 Score=100.70 Aligned_cols=50 Identities=24% Similarity=0.426 Sum_probs=46.1
Q ss_pred CCccCCCCChhhHHHHHHHHHHcC-CchhhhhccCC-CCCHHHHHHHHHHHH
Q 046570 60 PTVQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLP-GRTDNAIKNHWNSTL 109 (255)
Q Consensus 60 p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~p-gRT~~qcknRw~~ll 109 (255)
..+.+++||++||.+|+++|.+|| ++|..||.+|| |||+.||++||..++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456688999999999999999999 89999999999 999999999998764
No 38
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.49 E-value=2.8e-14 Score=102.18 Aligned_cols=51 Identities=25% Similarity=0.494 Sum_probs=46.0
Q ss_pred ccCCCCChhhHHHHHHHHHHcC-CchhhhhccCC--CCCHHHHHHHHHHHHHhH
Q 046570 62 VQHRPFTPAEDSIIIQAHAVHG-NKWATIARSLP--GRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 62 l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~~~p--gRT~~qcknRw~~llr~k 112 (255)
.++++||+|||++|+++|.+|| ++|..||..+| |||+.||++||+++++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4678999999999999999999 58999999866 999999999999998754
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.22 E-value=2.6e-15 Score=114.13 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=54.7
Q ss_pred cCCCCccCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhHHHh
Q 046570 57 QLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKRMA 115 (255)
Q Consensus 57 ~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~~~ 115 (255)
.++|.+++++||++||.+|++++..||++|..||.+|||||++||++||+.++++....
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~ 67 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67 (89)
Confidence 56788999999999999999999999999999999999999999999999999876443
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.45 E-value=6.3e-14 Score=109.64 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=67.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCC----CCCCcccccccccccC-----CCCccCCCCChhhHHH-H
Q 046570 6 NNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGI----PGRSGKSCRLRWCNQL-----SPTVQHRPFTPAEDSI-I 75 (255)
Q Consensus 6 l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l----pgRt~~qCr~Rw~~~L-----~p~l~k~~WT~eED~~-L 75 (255)
....+++++||++||+.|+.+|.+||.++|..|+..+ ++||+.+|++||++++ +|.++++.-+|.+-.. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 4578899999999999999999999988999999865 8999999999999988 6889898888877655 7
Q ss_pred HHHHHHcC
Q 046570 76 IQAHAVHG 83 (255)
Q Consensus 76 l~~v~~~G 83 (255)
+.++..+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776655
No 41
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.43 E-value=4.3e-14 Score=109.68 Aligned_cols=57 Identities=25% Similarity=0.541 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCC
Q 046570 4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPT 61 (255)
Q Consensus 4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~ 61 (255)
++|+|.+++|+||++||.+|+.+|..|| .+|..||.+|||||+.||+.||..+|...
T Consensus 48 ~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 48 NHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HTTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred hccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999 58999999999999999999999887653
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.43 E-value=6e-14 Score=105.44 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhccC----CCCCCcccccccccccC-----CCCccCC-CCChhhHHHHHHHHH
Q 046570 13 GSWSPQEDATLIKLVEQHGPRNWSMISSG----IPGRSGKSCRLRWCNQL-----SPTVQHR-PFTPAEDSIIIQAHA 80 (255)
Q Consensus 13 g~WT~eED~~L~~lv~~~G~~~W~~IA~~----lpgRt~~qCr~Rw~~~L-----~p~l~k~-~WT~eED~~Ll~~v~ 80 (255)
++||++||+.|+.+|.+||.++|..|+.. |++||+.+|++||++++ +|.++++ +..++...+++.++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998899999984 89999999999999987 6776665 677777788888764
No 43
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.12 E-value=1.7e-14 Score=109.62 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCC
Q 046570 3 SNSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60 (255)
Q Consensus 3 sn~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p 60 (255)
+.++.|.+.+|+||++||.+|+.+|..||. +|..||.+|||||+.||+.||.++|..
T Consensus 7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 456789999999999999999999999995 799999999999999999999998763
No 44
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=2.7e-13 Score=99.54 Aligned_cols=51 Identities=16% Similarity=0.340 Sum_probs=47.1
Q ss_pred CCccCCCCChhhHHHHHHHHHHcC----CchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 60 PTVQHRPFTPAEDSIIIQAHAVHG----NKWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 60 p~l~k~~WT~eED~~Ll~~v~~~G----~~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
+...+++||++||.+|++++..|| .+|.+||.+|||||..||++||..++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 689999999999999999999998865
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=103.05 Aligned_cols=50 Identities=20% Similarity=0.447 Sum_probs=46.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc
Q 046570 7 NNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ 57 (255)
Q Consensus 7 ~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~ 57 (255)
.....+++||++||.+|+++|.+|| .+|..||.+|++||+.||+.||.++
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3456789999999999999999999 8999999999999999999999987
No 46
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.37 E-value=9.7e-14 Score=101.91 Aligned_cols=53 Identities=19% Similarity=0.387 Sum_probs=47.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---CCChhhhccCCCCCCcccccccccccCC
Q 046570 7 NNDRIKGSWSPQEDATLIKLVEQHG---PRNWSMISSGIPGRSGKSCRLRWCNQLS 59 (255)
Q Consensus 7 ~~~~~kg~WT~eED~~L~~lv~~~G---~~~W~~IA~~lpgRt~~qCr~Rw~~~L~ 59 (255)
.+...+++||++||++|+.++..|| +.+|..||.+|||||..||+.||.+++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999 4579999999999999999999987664
No 47
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.34 E-value=1e-13 Score=108.24 Aligned_cols=56 Identities=30% Similarity=0.431 Sum_probs=51.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCC
Q 046570 4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSP 60 (255)
Q Consensus 4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p 60 (255)
++|+|.+++|+||++||.+|+.+|..|| .+|..||.+|||||+.||+.||..++.+
T Consensus 45 ~~L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 45 NYINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HHSSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred HHHcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 5689999999999999999999999999 4799999999999999999999876653
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.34 E-value=5e-13 Score=99.51 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=44.8
Q ss_pred CccCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHH
Q 046570 61 TVQHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNST 108 (255)
Q Consensus 61 ~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~l 108 (255)
...+++||++||.+|++++.+||.+|..||.+|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999755
No 49
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.33 E-value=2.4e-13 Score=109.05 Aligned_cols=55 Identities=27% Similarity=0.581 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCC
Q 046570 4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS 59 (255)
Q Consensus 4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~ 59 (255)
++|+|.+++|+||++||.+|+.+|..|| .+|..||.+|||||..||+.||..+++
T Consensus 54 ~~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 54 NYLAPSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp HHTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred hhcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999 689999999999999999999987654
No 50
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.30 E-value=2.7e-12 Score=90.94 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=46.8
Q ss_pred ccCCCCChhhHHHHHHHHHHcCCchhhhh---ccCCCCCHHHHHHHHHHHHHhH
Q 046570 62 VQHRPFTPAEDSIIIQAHAVHGNKWATIA---RSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 62 l~k~~WT~eED~~Ll~~v~~~G~~W~~IA---~~~pgRT~~qcknRw~~llr~k 112 (255)
.++.+||+||++.|+++|++||.+|..|+ .+|++||..++++||+.++++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36789999999999999999999999999 6788999999999999988753
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.27 E-value=5.2e-12 Score=94.82 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=45.4
Q ss_pred CCCChhhHHHHHHHHHHcCC-chhhhhcc----CCCCCHHHHHHHHHHHHHhHH
Q 046570 65 RPFTPAEDSIIIQAHAVHGN-KWATIARS----LPGRTDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 65 ~~WT~eED~~Ll~~v~~~G~-~W~~IA~~----~pgRT~~qcknRw~~llr~k~ 113 (255)
.+||++||+.|+.+|.+||. +|+.|+.. |+|||+.+||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999996 99999995 899999999999999998664
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.23 E-value=1.2e-11 Score=96.59 Aligned_cols=54 Identities=24% Similarity=0.446 Sum_probs=48.3
Q ss_pred CCCccCCCCChhhHHHHHHHHHHcCC-chhhhhccC----CCCCHHHHHHHHHHHHHhH
Q 046570 59 SPTVQHRPFTPAEDSIIIQAHAVHGN-KWATIARSL----PGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 59 ~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~~----pgRT~~qcknRw~~llr~k 112 (255)
.+..++++||++||+.|+.+|.+||. +|+.|+..+ ++||+.+|++||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999996 999999965 8999999999999998754
No 53
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.22 E-value=9e-12 Score=99.62 Aligned_cols=56 Identities=25% Similarity=0.468 Sum_probs=50.8
Q ss_pred cCCCCccCCCCChhhHHHHHHHHHHcCC-chhhhhcc----CCCCCHHHHHHHHHHHHHhH
Q 046570 57 QLSPTVQHRPFTPAEDSIIIQAHAVHGN-KWATIARS----LPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 57 ~L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~----~pgRT~~qcknRw~~llr~k 112 (255)
-+.+..++++||++||+.|+++|.+||. +|+.|+.. |+|||+.+|++||+++++..
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 3566778899999999999999999996 99999998 58999999999999999864
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.20 E-value=2.6e-11 Score=92.84 Aligned_cols=53 Identities=28% Similarity=0.569 Sum_probs=47.2
Q ss_pred cCCCCChhhHHHHHHHHHHcC----CchhhhhccCCCCCHHHHHHHHHHHHHhHHHh
Q 046570 63 QHRPFTPAEDSIIIQAHAVHG----NKWATIARSLPGRTDNAIKNHWNSTLRRKRMA 115 (255)
Q Consensus 63 ~k~~WT~eED~~Ll~~v~~~G----~~W~~IA~~~pgRT~~qcknRw~~llr~k~~~ 115 (255)
.+++||++||++|++++.+|| ++|.+||..|||||..+|++||..++......
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999996 67999999999999999999999998775443
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.19 E-value=9.3e-12 Score=109.56 Aligned_cols=55 Identities=22% Similarity=0.442 Sum_probs=48.4
Q ss_pred CCccCCCCChhhHHHHHHHHHHcCCc------hhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570 60 PTVQHRPFTPAEDSIIIQAHAVHGNK------WATIARSLPGRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 60 p~l~k~~WT~eED~~Ll~~v~~~G~~------W~~IA~~~pgRT~~qcknRw~~llr~k~~ 114 (255)
+.+++++||++||++|+++|.+||++ |..||++|||||++|||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999985 99999999999999999999999998754
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.13 E-value=5.1e-11 Score=95.36 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=48.3
Q ss_pred CCCccCCCCChhhHHHHHHHHHHcCC-chhhhhcc----CCCCCHHHHHHHHHHHHHhH
Q 046570 59 SPTVQHRPFTPAEDSIIIQAHAVHGN-KWATIARS----LPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 59 ~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~----~pgRT~~qcknRw~~llr~k 112 (255)
....++++||++||+.|+++|.+||. +|+.|+.. |++||+.+|++||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34556889999999999999999996 99999996 48999999999999999765
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.13 E-value=8.1e-12 Score=95.68 Aligned_cols=48 Identities=15% Similarity=0.416 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCChhhhccCCCCCCcccccccccccC
Q 046570 11 IKGSWSPQEDATLIKLVEQHG---PRNWSMISSGIPGRSGKSCRLRWCNQL 58 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G---~~~W~~IA~~lpgRt~~qCr~Rw~~~L 58 (255)
.+++||++||++|..++.+|| +..|..||.+|||||..||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 468999999999999999997 567999999999999999999998754
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.7e-10 Score=81.53 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=47.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccC
Q 046570 4 NSNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQL 58 (255)
Q Consensus 4 n~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L 58 (255)
.+.......++||++|+++|.+++.+|| .+|..||.+||+||..||..+|....
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 3445566779999999999999999999 68999999999999999999996543
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=3.3e-10 Score=79.98 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=44.0
Q ss_pred cCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHH
Q 046570 63 QHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 63 ~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr 110 (255)
...+||++|++++++++.+||.+|..||..||+||..+|..+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 357999999999999999999999999999999999999999976543
No 60
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.96 E-value=3.2e-10 Score=80.28 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhc---cCCCCCCcccccccccccCC
Q 046570 9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMIS---SGIPGRSGKSCRLRWCNQLS 59 (255)
Q Consensus 9 ~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA---~~lpgRt~~qCr~Rw~~~L~ 59 (255)
...+.+||+|||+.|+++|.+||. +|..|+ .++++||...+++||+++..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 458899999999999999999996 999999 68899999999999988654
No 61
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.87 E-value=2.2e-09 Score=81.96 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=58.7
Q ss_pred ccccccccccCCCCccCCCCChhhHHHHHHHHHHcCCchhhhhccC-----CCCCHHHHHHHHHHHHHhHHHhh
Q 046570 48 KSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGNKWATIARSL-----PGRTDNAIKNHWNSTLRRKRMAE 116 (255)
Q Consensus 48 ~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~-----pgRT~~qcknRw~~llr~k~~~~ 116 (255)
.=+.++|.++|.+ .+||.+|+..|++++++||.+|..|+..+ ++||..++|+||..+.++.....
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5677899999876 89999999999999999999999999998 58999999999999998876554
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.81 E-value=1.8e-09 Score=103.78 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=44.4
Q ss_pred CCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 65 RPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
..||++|..++++++.+||.+|..||..+++||..||+++|..+.++.
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999999998766553
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.78 E-value=6.8e-09 Score=75.76 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=44.7
Q ss_pred CccCCCCChhhHHHHHHHHHHcC----CchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 61 TVQHRPFTPAEDSIIIQAHAVHG----NKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 61 ~l~k~~WT~eED~~Ll~~v~~~G----~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
....+.||.+|+++|.+++.+|+ .+|.+||.+| |||..+|++||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34567999999999999999997 5799999998 99999999999888654
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.75 E-value=7.4e-09 Score=90.45 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=47.3
Q ss_pred cCCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhHH
Q 046570 63 QHRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 63 ~k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k~ 113 (255)
...+||++|+.++++++.+||.+|..||+.+++||..||+++|+.+.++..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence 357999999999999999999999999999999999999999998887743
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.71 E-value=2.8e-09 Score=77.86 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=44.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC---CCChhhhccCCCCCCcccccccccccCC
Q 046570 8 NDRIKGSWSPQEDATLIKLVEQHG---PRNWSMISSGIPGRSGKSCRLRWCNQLS 59 (255)
Q Consensus 8 ~~~~kg~WT~eED~~L~~lv~~~G---~~~W~~IA~~lpgRt~~qCr~Rw~~~L~ 59 (255)
.....+.||.+||++|.+++++|+ ++.|..||.+| |||..+|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 455678999999999999999997 45699999998 9999999999976543
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.57 E-value=2.4e-08 Score=72.99 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhhhccCCCCCCcccccccccccCCC
Q 046570 12 KGSWSPQEDATLIKLVEQHGP---RNWSMISSGIPGRSGKSCRLRWCNQLSP 60 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~---~~W~~IA~~lpgRt~~qCr~Rw~~~L~p 60 (255)
...||.+|+++|..++..|+. +.|..||.+|||||..+|+.||..++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 467999999999999999964 4699999999999999999999877543
No 67
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.51 E-value=2.9e-08 Score=86.74 Aligned_cols=50 Identities=18% Similarity=0.340 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCC
Q 046570 9 DRIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLS 59 (255)
Q Consensus 9 ~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~ 59 (255)
....++||++|+.++++++.+|| ++|..||..|++||..||+.+|.++..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999 789999999999999999999987654
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.51 E-value=1.1e-07 Score=69.47 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=43.9
Q ss_pred CCCCChhhHHHHHHHHHHcCC----chhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGN----KWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~----~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
...||.+|+++|.+++..|+. +|.+||..+||||..+|+.||..+++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 468999999999999999983 6999999999999999999998885543
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.45 E-value=4.9e-08 Score=68.51 Aligned_cols=48 Identities=17% Similarity=0.407 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhhhcc-CCCCCCcccccccccccCC
Q 046570 12 KGSWSPQEDATLIKLVEQH--------GPRNWSMISS-GIPGRSGKSCRLRWCNQLS 59 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~--------G~~~W~~IA~-~lpgRt~~qCr~Rw~~~L~ 59 (255)
+.+||++||..|+..|..| |..-|..++. .+|++|-++||+||..+|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5789999999999999999 4345999999 8999999999999998774
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.43 E-value=2.2e-07 Score=65.19 Aligned_cols=47 Identities=28% Similarity=0.489 Sum_probs=42.5
Q ss_pred CCCCChhhHHHHHHHHHHc--------CCc-hhhhhc-cCCCCCHHHHHHHHHHHHH
Q 046570 64 HRPFTPAEDSIIIQAHAVH--------GNK-WATIAR-SLPGRTDNAIKNHWNSTLR 110 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~--------G~~-W~~IA~-~~pgRT~~qcknRw~~llr 110 (255)
+.+||++||..|+..|..| |+. |..|+. .+|++|-.+||+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 554 999999 8999999999999988764
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.27 E-value=1.9e-06 Score=78.55 Aligned_cols=101 Identities=16% Similarity=0.210 Sum_probs=81.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc----------------------------------
Q 046570 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ---------------------------------- 57 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~---------------------------------- 57 (255)
-+.||..+...++.++.+||-.+|..||..|+|+|...++..+.-.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999998999999999999987774432110
Q ss_pred ---------------C-CCCccCCCCChhhHHHHHHHHHHcCC----chhhhh---c---------cCCCCCHHHHHHHH
Q 046570 58 ---------------L-SPTVQHRPFTPAEDSIIIQAHAVHGN----KWATIA---R---------SLPGRTDNAIKNHW 105 (255)
Q Consensus 58 ---------------L-~p~l~k~~WT~eED~~Ll~~v~~~G~----~W~~IA---~---------~~pgRT~~qcknRw 105 (255)
+ .+..+...||++||..||-++.+||- .|..|. + +|..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 12224468999999999999999995 599996 2 34589999999999
Q ss_pred HHHHHhH
Q 046570 106 NSTLRRK 112 (255)
Q Consensus 106 ~~llr~k 112 (255)
..|++--
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998653
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.25 E-value=2.3e-07 Score=67.63 Aligned_cols=44 Identities=11% Similarity=0.306 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhhhccCCCCCCccccccccc
Q 046570 12 KGSWSPQEDATLIKLVEQHGP---RNWSMISSGIPGRSGKSCRLRWC 55 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~---~~W~~IA~~lpgRt~~qCr~Rw~ 55 (255)
.+.||.+|+++|..++..|+. ..|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 467999999999999999964 36999999999999999999985
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2e-06 Score=60.86 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=44.8
Q ss_pred CCccCCCCChhhHHHHHHHHHHcCCchhhhhc-cCCCCCHHHHHHHHHHH
Q 046570 60 PTVQHRPFTPAEDSIIIQAHAVHGNKWATIAR-SLPGRTDNAIKNHWNST 108 (255)
Q Consensus 60 p~l~k~~WT~eED~~Ll~~v~~~G~~W~~IA~-~~pgRT~~qcknRw~~l 108 (255)
|.+....||++|..++.+++.+||.+|..|++ .+|+||..+|...|...
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 66778899999999999999999999999999 59999999999988653
No 74
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.4e-06 Score=61.74 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhcc-CCCCCCcccccccccc
Q 046570 5 SNNNDRIKGSWSPQEDATLIKLVEQHGPRNWSMISS-GIPGRSGKSCRLRWCN 56 (255)
Q Consensus 5 ~l~~~~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~-~lpgRt~~qCr~Rw~~ 56 (255)
+..|......||++|-+++.+++.+|| .+|..|+. .|++|+..+|...|..
T Consensus 2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 2 SSGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 456788889999999999999999999 68999998 6999999999887754
No 75
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.06 E-value=1.2e-06 Score=63.85 Aligned_cols=43 Identities=26% Similarity=0.536 Sum_probs=38.6
Q ss_pred CCCCChhhHHHHHHHHHHcCC----chhhhhccCCCCCHHHHHHHHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGN----KWATIARSLPGRTDNAIKNHWN 106 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~----~W~~IA~~~pgRT~~qcknRw~ 106 (255)
..+||.+|+++|.+++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 6999999999999999999884
No 76
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.98 E-value=1.8e-05 Score=59.71 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=44.4
Q ss_pred CCCChhhHHHHHHHHHHcCC---chhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 65 RPFTPAEDSIIIQAHAVHGN---KWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 65 ~~WT~eED~~Ll~~v~~~G~---~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
--||.++|..||..+++-|. .|..||..|.+|+++||++||+.+++-.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 47999999999999999986 7999999999999999999999998754
No 77
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.12 E-value=1.6e-06 Score=62.13 Aligned_cols=45 Identities=18% Similarity=0.383 Sum_probs=41.9
Q ss_pred CCChhhHHHHHHHHHHcCC---chhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 66 PFTPAEDSIIIQAHAVHGN---KWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 66 ~WT~eED~~Ll~~v~~~G~---~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
-||.+||..||..+++-|. .|..||..+ +||++||.+||+.+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 6999999999999999997 699999999 99999999999998763
No 78
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.82 E-value=3.1e-05 Score=55.83 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=41.0
Q ss_pred CCCCChhhHHHHHHHHHHcCCchhhhhc-cCCCCCHHHHHHHHHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGNKWATIAR-SLPGRTDNAIKNHWNS 107 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~-~~pgRT~~qcknRw~~ 107 (255)
...||++|..++.+++.+||.+|..|++ .+|+||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4589999999999999999999999999 5999999999999874
No 79
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.75 E-value=3.3e-05 Score=58.81 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=42.0
Q ss_pred CCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNST 108 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~l 108 (255)
...||++|..++.+++..||.+|..||..+|+||..+|-..|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999988654
No 80
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.74 E-value=6e-05 Score=57.28 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=47.2
Q ss_pred CCCChhhHHHHHHHHHHcCCchhhhhccCC-----CCCHHHHHHHHHHHHHhHHHhh
Q 046570 65 RPFTPAEDSIIIQAHAVHGNKWATIARSLP-----GRTDNAIKNHWNSTLRRKRMAE 116 (255)
Q Consensus 65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~~~p-----gRT~~qcknRw~~llr~k~~~~ 116 (255)
..||.+|...|+++++.|+-+|.-|+..+. .||..++|.||..+.++.....
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999999864 7999999999999998876543
No 81
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.71 E-value=1.7e-05 Score=57.17 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhcc-CCCCCCcccccccccc
Q 046570 10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISS-GIPGRSGKSCRLRWCN 56 (255)
Q Consensus 10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~-~lpgRt~~qCr~Rw~~ 56 (255)
.....||++|-+++..++.+|| .+|..|+. .||+||..+|...|..
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4566899999999999999999 58999999 5999999999988753
No 82
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.69 E-value=1.9e-05 Score=60.22 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCcccccccccc
Q 046570 12 KGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCN 56 (255)
Q Consensus 12 kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~ 56 (255)
...||++|-.++.+++..|| .+|..||..||+||..+|...|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46799999999999999999 689999999999999999988753
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.68 E-value=1.2e-05 Score=77.21 Aligned_cols=47 Identities=19% Similarity=0.372 Sum_probs=43.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc
Q 046570 10 RIKGSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ 57 (255)
Q Consensus 10 ~~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~ 57 (255)
....+||.+|-.+++.++.+|| .+|..||.+|++||..||+.+|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4568999999999999999999 6899999999999999999998654
No 84
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.34 E-value=8.8e-05 Score=56.44 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhccCC-----CCCCcccccccccccC
Q 046570 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGI-----PGRSGKSCRLRWCNQL 58 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l-----pgRt~~qCr~Rw~~~L 58 (255)
..++||.||++.|.+|+.+|+ ..|..|+..+ ++||..+++.||..+.
T Consensus 29 ~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 448999999999999999999 5799999988 5899999999997643
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.11 E-value=0.00028 Score=52.29 Aligned_cols=50 Identities=14% Similarity=0.355 Sum_probs=41.8
Q ss_pred CCCCChhhHHHHHHHHHHcC----------CchhhhhccCC----CCCHHHHHHHHHHHHHhHH
Q 046570 64 HRPFTPAEDSIIIQAHAVHG----------NKWATIARSLP----GRTDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G----------~~W~~IA~~~p----gRT~~qcknRw~~llr~k~ 113 (255)
...||.+|-.+||+++..+. ..|..||..|. .||+.||+.+|.+|.+...
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk 67 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFK 67 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999987522 15999999864 7999999999999888754
No 86
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.08 E-value=0.0015 Score=60.94 Aligned_cols=99 Identities=18% Similarity=0.315 Sum_probs=78.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhccCCC-CCCccccccccccc----------------------------------
Q 046570 13 GSWSPQEDATLIKLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQ---------------------------------- 57 (255)
Q Consensus 13 g~WT~eED~~L~~lv~~~G~~~W~~IA~~lp-gRt~~qCr~Rw~~~---------------------------------- 57 (255)
+.||.-+=..++.++.+||-.+-..||..|. |+|...++ +|...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999889999999997 89987766 33220
Q ss_pred --------------C----CCCc-cCCCCChhhHHHHHHHHHHcCC----chhhhhcc------------CCCCCHHHHH
Q 046570 58 --------------L----SPTV-QHRPFTPAEDSIIIQAHAVHGN----KWATIARS------------LPGRTDNAIK 102 (255)
Q Consensus 58 --------------L----~p~l-~k~~WT~eED~~Ll~~v~~~G~----~W~~IA~~------------~pgRT~~qck 102 (255)
| .++. +...||++||..||-++.+||- .|..|-.. |..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 0 1111 3458999999999999999994 59999332 3479999999
Q ss_pred HHHHHHHHhH
Q 046570 103 NHWNSTLRRK 112 (255)
Q Consensus 103 nRw~~llr~k 112 (255)
.|...|++--
T Consensus 283 rRc~tLi~~I 292 (374)
T 2y9y_A 283 RRGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999754
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.04 E-value=0.00051 Score=58.52 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=69.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC--CCChhhhcc--CCCCCCccccccccccc--------------------------
Q 046570 8 NDRIKGSWSPQEDATLIKLVEQHG--PRNWSMISS--GIPGRSGKSCRLRWCNQ-------------------------- 57 (255)
Q Consensus 8 ~~~~kg~WT~eED~~L~~lv~~~G--~~~W~~IA~--~lpgRt~~qCr~Rw~~~-------------------------- 57 (255)
|.-....||..|-..|+.++.+|| ...|..|+. .|.+++...+..-+...
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~ 82 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVK 82 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 344567899999999999999999 457999975 36677764433211100
Q ss_pred -----------------------------------------CC----CCccCCCCChhhHHHHHHHHHHcC-Cchhhhhc
Q 046570 58 -----------------------------------------LS----PTVQHRPFTPAEDSIIIQAHAVHG-NKWATIAR 91 (255)
Q Consensus 58 -----------------------------------------L~----p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~IA~ 91 (255)
+. +..-...||+++|..||-++.+|| ++|..|-.
T Consensus 83 ~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 83 GPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 00 000123699999999999999999 89999954
Q ss_pred c----C--------CC--CCHHHHHHHHHHHHHh
Q 046570 92 S----L--------PG--RTDNAIKNHWNSTLRR 111 (255)
Q Consensus 92 ~----~--------pg--RT~~qcknRw~~llr~ 111 (255)
. | .. +++..+..|...+|+-
T Consensus 163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred ChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 2 1 12 4556788998777654
No 88
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.95 E-value=0.00015 Score=51.98 Aligned_cols=45 Identities=11% Similarity=0.455 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHhCC--CChhhhccCCCCCCcccccccccccCC
Q 046570 14 SWSPQEDATLIKLVEQHGP--RNWSMISSGIPGRSGKSCRLRWCNQLS 59 (255)
Q Consensus 14 ~WT~eED~~L~~lv~~~G~--~~W~~IA~~lpgRt~~qCr~Rw~~~L~ 59 (255)
.||.+||..|+..+.+.|+ ..|..||..+ +|++.|+..||+..+.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999986 2599999999 8999999999987654
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.80 E-value=0.00016 Score=53.65 Aligned_cols=48 Identities=27% Similarity=0.467 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC------C---ChhhhccCC----CCCCccccccccccc
Q 046570 10 RIKGSWSPQEDATLIKLVEQHGP------R---NWSMISSGI----PGRSGKSCRLRWCNQ 57 (255)
Q Consensus 10 ~~kg~WT~eED~~L~~lv~~~G~------~---~W~~IA~~l----pgRt~~qCr~Rw~~~ 57 (255)
.+...||.+|-.+|+.++..+.. . .|..||..| -.||+.||+.+|.++
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 46788999999999999975311 1 499999987 269999999999874
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.20 E-value=0.0022 Score=48.42 Aligned_cols=45 Identities=16% Similarity=0.409 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CChhhhccCCCCCCccccccccccc
Q 046570 13 GSWSPQEDATLIKLVEQHGP--RNWSMISSGIPGRSGKSCRLRWCNQ 57 (255)
Q Consensus 13 g~WT~eED~~L~~lv~~~G~--~~W~~IA~~lpgRt~~qCr~Rw~~~ 57 (255)
-.||.++|..|+.++.+.|+ ..|..||..|.+|++.|+..||+.+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 35999999999999999986 3699999999999999999999753
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.37 E-value=0.029 Score=39.64 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=40.4
Q ss_pred cCCCCChhhHHHHHHHHHHcCCc---hhhhhccC--CCCCHHHHHHHHHHHH
Q 046570 63 QHRPFTPAEDSIIIQAHAVHGNK---WATIARSL--PGRTDNAIKNHWNSTL 109 (255)
Q Consensus 63 ~k~~WT~eED~~Ll~~v~~~G~~---W~~IA~~~--pgRT~~qcknRw~~ll 109 (255)
.+-.||+|....+++++.++|.. +..|...| +|.|..+|++|.+++.
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999965 78998875 4899999999987764
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.39 E-value=0.043 Score=41.49 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhccCC-----CCCCccccccccccc
Q 046570 11 IKGSWSPQEDATLIKLVEQHGPRNWSMISSGI-----PGRSGKSCRLRWCNQ 57 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G~~~W~~IA~~l-----pgRt~~qCr~Rw~~~ 57 (255)
+...||.+|...|..|+.+|. ..|--|+... +.||..+.+.||..+
T Consensus 29 ~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 346899999999999999999 5799998765 379999999999764
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.88 E-value=0.16 Score=46.03 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=42.2
Q ss_pred CCCCChhhHHHHHHHHHHcCC-chhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 64 HRPFTPAEDSIIIQAHAVHGN-KWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~-~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.+.||..+...++.++.+||. .|..||..|+|+|...|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 458999999999999999995 699999999999999998877665544
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=91.78 E-value=0.085 Score=37.21 Aligned_cols=49 Identities=8% Similarity=0.103 Sum_probs=39.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC--hhhhccCC--CCCCcccccccccc
Q 046570 8 NDRIKGSWSPQEDATLIKLVEQHGPRN--WSMISSGI--PGRSGKSCRLRWCN 56 (255)
Q Consensus 8 ~~~~kg~WT~eED~~L~~lv~~~G~~~--W~~IA~~l--pgRt~~qCr~Rw~~ 56 (255)
+.+.+-.||+|.-..+..+|...|... +..|...| +|.|..++.-|.+.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 466788899999999999999999432 67887665 68888888776554
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.39 E-value=0.3 Score=41.14 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=41.7
Q ss_pred cCCCCChhhHHHHHHHHHHcC---Cchhhhhcc--CCCCCHHHHHHHHHHHHHhH
Q 046570 63 QHRPFTPAEDSIIIQAHAVHG---NKWATIARS--LPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 63 ~k~~WT~eED~~Ll~~v~~~G---~~W~~IA~~--~pgRT~~qcknRw~~llr~k 112 (255)
....||..|-..|+.++.+|| .+|..|+.. |.++|...++..+..++...
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999 579999864 78999999998777766553
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.12 E-value=0.18 Score=44.98 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhcc
Q 046570 13 GSWSPQEDATLIKLVEQHGPRNWSMISS 40 (255)
Q Consensus 13 g~WT~eED~~L~~lv~~~G~~~W~~IA~ 40 (255)
..|+.+||..|+..|.+||.++|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999999999954
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=86.83 E-value=0.37 Score=42.93 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.5
Q ss_pred CCChhhHHHHHHHHHHcC-Cchhhhhcc
Q 046570 66 PFTPAEDSIIIQAHAVHG-NKWATIARS 92 (255)
Q Consensus 66 ~WT~eED~~Ll~~v~~~G-~~W~~IA~~ 92 (255)
.|+.+||..||.+|.+|| +.|.+|..-
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 599999999999999999 889999653
No 98
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=73.01 E-value=3.4 Score=38.38 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhccCC------------CCCCcccccccc
Q 046570 11 IKGSWSPQEDATLIKLVEQHGP---RNWSMISSGI------------PGRSGKSCRLRW 54 (255)
Q Consensus 11 ~kg~WT~eED~~L~~lv~~~G~---~~W~~IA~~l------------pgRt~~qCr~Rw 54 (255)
++..||.+||..|+-++.+||. ++|..|-..| ..||+..+..|.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc 285 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRG 285 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 4567999999999999999999 8899995432 356776666665
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=65.66 E-value=4 Score=31.35 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=31.2
Q ss_pred HHHHHHHHcCC--------chhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 74 IIIQAHAVHGN--------KWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 74 ~Ll~~v~~~G~--------~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
.|..+|...|+ .|..||..|.--.+..++..|..+|-..
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 58888888885 6999999876444889999999888554
No 100
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=64.49 E-value=5.8 Score=32.76 Aligned_cols=30 Identities=30% Similarity=0.614 Sum_probs=24.0
Q ss_pred CCCCCCCCCCHHHHHHHH--------HHHHHhCCCChhhhc
Q 046570 7 NNDRIKGSWSPQEDATLI--------KLVEQHGPRNWSMIS 39 (255)
Q Consensus 7 ~~~~~kg~WT~eED~~L~--------~lv~~~G~~~W~~IA 39 (255)
-|...+|-||++.|+.|. .++++|| |..|.
T Consensus 109 iP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 109 PPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp SCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 467899999999999874 6788888 66554
No 101
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=62.10 E-value=9.7 Score=28.49 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=29.2
Q ss_pred HHHHHHHHcCC--------chhhhhccCCCCC----HHHHHHHHHHHHHhH
Q 046570 74 IIIQAHAVHGN--------KWATIARSLPGRT----DNAIKNHWNSTLRRK 112 (255)
Q Consensus 74 ~Ll~~v~~~G~--------~W~~IA~~~pgRT----~~qcknRw~~llr~k 112 (255)
.|..+|...|+ .|..||..|.--. +..++..|..+|-.-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 57777888884 6999999985322 468899898887654
No 102
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=60.53 E-value=8.4 Score=29.56 Aligned_cols=39 Identities=15% Similarity=0.353 Sum_probs=29.9
Q ss_pred HHHHHHHHcCC--------chhhhhccCCCCC----HHHHHHHHHHHHHhH
Q 046570 74 IIIQAHAVHGN--------KWATIARSLPGRT----DNAIKNHWNSTLRRK 112 (255)
Q Consensus 74 ~Ll~~v~~~G~--------~W~~IA~~~pgRT----~~qcknRw~~llr~k 112 (255)
.|..+|...|+ .|..|+..|.--. +..++..|..+|-..
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~y 94 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPY 94 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 57888888885 6999999975222 568899999888654
No 103
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=60.09 E-value=30 Score=26.54 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=30.3
Q ss_pred HHHHHHHHcCC--------chhhhhccCCCCC----HHHHHHHHHHHHHhHHH
Q 046570 74 IIIQAHAVHGN--------KWATIARSLPGRT----DNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 74 ~Ll~~v~~~G~--------~W~~IA~~~pgRT----~~qcknRw~~llr~k~~ 114 (255)
.|..+|..+|+ .|..|+..|.--+ +..++..|..+|-.--.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 57777888885 6999999985221 46889999888866543
No 104
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=58.59 E-value=12 Score=24.61 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=31.9
Q ss_pred CChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 67 FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 67 WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
+++ .+..++.++-..|-.+.+||..+ |-+...|+.+....+++
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444 44455556557788999999999 88999999887665544
No 105
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=56.86 E-value=6.7 Score=30.56 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=31.7
Q ss_pred HHHHHHHHcCC--------chhhhhccCCCCCHHHHHHHHHHHHHhHHH
Q 046570 74 IIIQAHAVHGN--------KWATIARSLPGRTDNAIKNHWNSTLRRKRM 114 (255)
Q Consensus 74 ~Ll~~v~~~G~--------~W~~IA~~~pgRT~~qcknRw~~llr~k~~ 114 (255)
.|..+|...|+ .|..|+..|.--.+..++..|..+|-..-.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 57777777774 599999987544489999999998876543
No 106
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=55.55 E-value=12 Score=28.86 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=30.2
Q ss_pred HHHHHHHHcCC--------chhhhhccCCCCC----HHHHHHHHHHHHHhHH
Q 046570 74 IIIQAHAVHGN--------KWATIARSLPGRT----DNAIKNHWNSTLRRKR 113 (255)
Q Consensus 74 ~Ll~~v~~~G~--------~W~~IA~~~pgRT----~~qcknRw~~llr~k~ 113 (255)
.|..+|..+|+ .|.+|+..|.--+ +..++..|..+|-..-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE 106 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFE 106 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 57788888885 6999999985222 4688999988886653
No 107
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=53.52 E-value=16 Score=24.67 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=30.2
Q ss_pred hHHHHHHHHHH----cCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 71 EDSIIIQAHAV----HGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 71 ED~~Ll~~v~~----~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
.+..++.+.-- .|-.|.+||..+ |-|...|+.+....+++-
T Consensus 14 ~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 14 REAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34445555443 567899999999 999999999887766554
No 108
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=52.12 E-value=15 Score=28.45 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCC--------chhhhhccCC--CC---CHHHHHHHHHHHHHhHH
Q 046570 73 SIIIQAHAVHGN--------KWATIARSLP--GR---TDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 73 ~~Ll~~v~~~G~--------~W~~IA~~~p--gR---T~~qcknRw~~llr~k~ 113 (255)
-.|..+|..+|+ .|..|+..|. .. .+..++..|..+|-..-
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE 108 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYE 108 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 367788888885 6999999875 22 25789999998886653
No 109
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=46.60 E-value=19 Score=24.01 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=25.1
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
.|-.+.+||..+ |-|...|+.+....+++-
T Consensus 24 ~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 24 TDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467899999999 999999999887766544
No 110
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=45.24 E-value=21 Score=28.36 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=30.3
Q ss_pred HHHHHHHHcCC--------chhhhhccCC--CC---CHHHHHHHHHHHHHhHH
Q 046570 74 IIIQAHAVHGN--------KWATIARSLP--GR---TDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 74 ~Ll~~v~~~G~--------~W~~IA~~~p--gR---T~~qcknRw~~llr~k~ 113 (255)
.|..+|...|+ .|..|+..|. .. .+..++..|..+|-..-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE 120 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYE 120 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 57788888885 6999999874 22 25789999998886543
No 111
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=43.89 E-value=17 Score=28.21 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=50.6
Q ss_pred CCCCCCCCCCHHHH--HHHHHHHHHhCCCChhhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHHHHHHcCC
Q 046570 7 NNDRIKGSWSPQED--ATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQAHAVHGN 84 (255)
Q Consensus 7 ~~~~~kg~WT~eED--~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~ 84 (255)
+.+.-+..|.+.+. +.|.+.+...|. ....|... .||. |+ =-.|..+|..+|+
T Consensus 2 ~~~~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i-~gk~-----------lD------------L~~Ly~~V~~~GG 56 (121)
T 2rq5_A 2 PLGSLGRRWGPNVQRLACIKKHLRSQGI-TMDELPLI-GGCE-----------LD------------LACFFRLINEMGG 56 (121)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEE-TTEE-----------CC------------HHHHHHHHHHTTS
T ss_pred cHHHhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcC-CCEe-----------cc------------HHHHHHHHHHcCc
Confidence 45677888998876 456667777773 23332211 1111 11 1257888888885
Q ss_pred --------chhhhhccCC--CC---CHHHHHHHHHHHHHh
Q 046570 85 --------KWATIARSLP--GR---TDNAIKNHWNSTLRR 111 (255)
Q Consensus 85 --------~W~~IA~~~p--gR---T~~qcknRw~~llr~ 111 (255)
.|..||..|. .- .+..++.+|..+|-.
T Consensus 57 ~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 57 MQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 6999999874 21 256889999887744
No 112
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=42.87 E-value=9.8 Score=28.55 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=29.0
Q ss_pred HHHHHHHHcCC--------chhhhhccCC--CC---CHHHHHHHHHHHHHhH
Q 046570 74 IIIQAHAVHGN--------KWATIARSLP--GR---TDNAIKNHWNSTLRRK 112 (255)
Q Consensus 74 ~Ll~~v~~~G~--------~W~~IA~~~p--gR---T~~qcknRw~~llr~k 112 (255)
.|..+|...|+ .|.+||..|+ .. .+..++..|..+|-.-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 57777888874 6999999874 11 2468999999888553
No 113
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=42.76 E-value=9.2 Score=28.04 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=27.1
Q ss_pred HHHHHHHHcCC--------chhhhhccCCC----CCHHHHHHHHHHHHHh
Q 046570 74 IIIQAHAVHGN--------KWATIARSLPG----RTDNAIKNHWNSTLRR 111 (255)
Q Consensus 74 ~Ll~~v~~~G~--------~W~~IA~~~pg----RT~~qcknRw~~llr~ 111 (255)
.|..+|...|+ .|.+|+..|.- -....++..|..+|-.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 57777877774 69999998742 1256888888776644
No 114
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=39.30 E-value=34 Score=24.12 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 71 EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 71 ED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
.+..++.++...|-.-..||..| |-+...|+.+....+++-
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34455555556778899999999 899999999887765543
No 115
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=35.67 E-value=18 Score=28.91 Aligned_cols=35 Identities=20% Similarity=0.431 Sum_probs=27.8
Q ss_pred hhhccCCCCCCcccccccccccCCCCccCCCCChhhHHHHHH
Q 046570 36 SMISSGIPGRSGKSCRLRWCNQLSPTVQHRPFTPAEDSIIIQ 77 (255)
Q Consensus 36 ~~IA~~lpgRt~~qCr~Rw~~~L~p~l~k~~WT~eED~~Ll~ 77 (255)
..||.+|.|+|+.+||..|. + ...||+||++.+.+
T Consensus 119 ~~vA~~ikgkt~eeir~~f~------I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTFN------I-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHTT------C-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 56889999999999999762 2 34699999988654
No 116
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=33.36 E-value=64 Score=21.51 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=31.1
Q ss_pred CChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 67 FTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 67 WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
+|+.|-+.| .++ ..|-...+||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455554444 444 5677899999999 88999999988776654
No 117
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=33.18 E-value=51 Score=23.06 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=28.9
Q ss_pred HHHHHHHHHH----cCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 72 DSIIIQAHAV----HGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 72 D~~Ll~~v~~----~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
+..++.+.-- .|-.+..||..+ |-|...|+.+....+++-
T Consensus 23 er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 23 EAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 4444444433 467899999999 999999999877665543
No 118
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=33.06 E-value=44 Score=25.92 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=24.6
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
.|-...+||..+ |-|...|+++....+++-
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 566899999999 889999999887766543
No 119
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=30.21 E-value=66 Score=25.01 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=24.4
Q ss_pred cCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 82 HGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 82 ~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
.|-...+||..+ |-+...|+++....+++-
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 466799999999 899999999887765543
No 120
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=30.15 E-value=40 Score=26.51 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhHH
Q 046570 70 AEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 70 eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k~ 113 (255)
+-|..|+.+....| -.|..||..+ |-|...|+.|+..+.....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 45778888877766 4699999999 9999999999988766543
No 121
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.95 E-value=75 Score=22.62 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=35.6
Q ss_pred CCCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 64 HRPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 64 k~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
....|+.|-+.|.-++ .|..-.+||..| |-+...|+++...++++-
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4467888777665443 788899999999 899999999998877653
No 122
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=28.18 E-value=85 Score=23.31 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 71 EDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 71 ED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
.+..++.++-..|-....||..+ |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 33445555556788899999999 88999999887765544
No 123
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.78 E-value=73 Score=22.66 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=34.0
Q ss_pred CCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 66 PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 66 ~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
..|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+....+++-
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467766666554 4 7788899999999 889999999887766544
No 124
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=27.67 E-value=69 Score=20.91 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=33.6
Q ss_pred CCCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 65 RPFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 65 ~~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
..+|+.|-+.|.- + ..|....+||..+ |-+...|+.+...+.++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4577777666554 4 6677899999999 88999999888776654
No 125
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=26.99 E-value=68 Score=21.15 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHH
Q 046570 70 AEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKN 103 (255)
Q Consensus 70 eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qckn 103 (255)
-|...|.+++..+++++++.|+.+ |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 467788888999999999999998 555554444
No 126
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.64 E-value=1.1e+02 Score=19.25 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 73 SIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 73 ~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
..++.+ ...|-.-.+||..+ |-+...|+.+....+++-
T Consensus 4 ~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 4 RQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 344555 35677889999999 899999999888776553
No 127
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=25.94 E-value=96 Score=21.99 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHH
Q 046570 69 PAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNH 104 (255)
Q Consensus 69 ~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknR 104 (255)
.-|...|..++..+|++..+.|+.+ |=+...+..|
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3467788888999999999999998 6666655444
No 128
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.28 E-value=1.7e+02 Score=22.28 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhccCCCCCCccccccccccc------CCCCcc----CCCCChhhHHHHHHHHHHc
Q 046570 13 GSWSPQEDATLIKLVEQHGPRNWSMISSGIPGRSGKSCRLRWCNQ------LSPTVQ----HRPFTPAEDSIIIQAHAVH 82 (255)
Q Consensus 13 g~WT~eED~~L~~lv~~~G~~~W~~IA~~lpgRt~~qCr~Rw~~~------L~p~l~----k~~WT~eED~~Ll~~v~~~ 82 (255)
.+.|.++-..++.++. .| .....||..+ |.+...++ +|... +.+... ....+++....|+.++...
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~l-gis~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 99 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQL-RVSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQN 99 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHH-TCCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 4688888888888874 56 4688899877 34444433 33322 222111 2357777778888877654
No 129
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=24.42 E-value=83 Score=21.97 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=33.1
Q ss_pred CCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 66 PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 66 ~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
..|+.|-+.|.- + ..|..-.+||..| |-+...|+.+....+++
T Consensus 29 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHHH-H-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666665544 4 6788899999999 89999999988776654
No 130
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.40 E-value=82 Score=21.72 Aligned_cols=43 Identities=30% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHHHHHHHHHHHh
Q 046570 66 PFTPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAIKNHWNSTLRR 111 (255)
Q Consensus 66 ~WT~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qcknRw~~llr~ 111 (255)
..|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467766665544 4 6778899999999 89999999988776554
No 131
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=24.17 E-value=1.1e+02 Score=23.30 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHcC-CchhhhhccCCCCCHHHHHHHHHHHHHhHH
Q 046570 70 AEDSIIIQAHAVHG-NKWATIARSLPGRTDNAIKNHWNSTLRRKR 113 (255)
Q Consensus 70 eED~~Ll~~v~~~G-~~W~~IA~~~pgRT~~qcknRw~~llr~k~ 113 (255)
+-|..|+.++...| -.+..||..+ |-+...|..|...+.....
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 34567777777766 4699999999 8899999999988765543
No 132
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.91 E-value=77 Score=23.61 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=24.5
Q ss_pred HcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 81 VHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 81 ~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
..|-....||..| |-|...|+++....+++-
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3566799999999 899999999887765543
No 133
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.33 E-value=1e+02 Score=24.66 Aligned_cols=31 Identities=13% Similarity=0.056 Sum_probs=24.5
Q ss_pred HcCCchhhhhccCCCCCHHHHHHHHHHHHHhH
Q 046570 81 VHGNKWATIARSLPGRTDNAIKNHWNSTLRRK 112 (255)
Q Consensus 81 ~~G~~W~~IA~~~pgRT~~qcknRw~~llr~k 112 (255)
..|-...+||..| |-|...|+.+....+++-
T Consensus 201 ~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 201 YEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp TSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4567899999999 899999998887655443
No 134
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=20.90 E-value=1e+02 Score=22.88 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=25.5
Q ss_pred ChhhHHHHHHHHHHcCCchhhhhccCCCCCHHHH
Q 046570 68 TPAEDSIIIQAHAVHGNKWATIARSLPGRTDNAI 101 (255)
Q Consensus 68 T~eED~~Ll~~v~~~G~~W~~IA~~~pgRT~~qc 101 (255)
+..-+..|..+....|..|..+|..| |=+..+|
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I 46 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDI 46 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 55556677778888999999999998 6566544
Done!