BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046572
         (130 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LW5|B Chain B, Improved Model Of Plant Photosystem I
          Length = 733

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 97  LIFMASWRVYFERRVEYLAWDWLRKTVGDVL 127
            +F+ SWR Y++  +E LAW   R  + +++
Sbjct: 660 FMFLISWRGYWQELIETLAWAHERTPLANLI 690


>pdb|2WSC|B Chain B, Improved Model Of Plant Photosystem I
 pdb|2WSE|B Chain B, Improved Model Of Plant Photosystem I
 pdb|2WSF|B Chain B, Improved Model Of Plant Photosystem I
          Length = 734

 Score = 27.7 bits (60), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 97  LIFMASWRVYFERRVEYLAWDWLRKTVGDVL 127
            +F+ SWR Y++  +E LAW   R  + +++
Sbjct: 661 FMFLISWRGYWQELIETLAWAHERTPLANLI 691


>pdb|2O01|B Chain B, The Structure Of A Plant Photosystem I Supercomplex At 3.4
           Angstrom Resolution
          Length = 732

 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 97  LIFMASWRVYFERRVEYLAWDWLRKTVGDVL 127
            +F+ SWR Y++  +E LAW   R  + +++
Sbjct: 660 FMFLISWRGYWQELIETLAWAHERTPLANLI 690


>pdb|1JB0|B Chain B, Crystal Structure Of Photosystem I: A Photosynthetic
           Reaction Center And Core Antenna System From
           Cyanobacteria
 pdb|3PCQ|B Chain B, Femtosecond X-Ray Protein Nanocrystallography
 pdb|4FE1|B Chain B, Improving The Accuracy Of Macromolecular Structure
           Refinement At 7 A Resolution
          Length = 740

 Score = 25.4 bits (54), Expect = 8.0,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 97  LIFMASWRVYFERRVEYLAWDWLRKTVGDVL 127
            +F+ SWR Y++  +E L W   R  + +++
Sbjct: 667 FMFLISWRGYWQELIETLVWAHERTPLANLV 697


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.137    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,991,953
Number of Sequences: 62578
Number of extensions: 81981
Number of successful extensions: 173
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 7
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)