Query 046572
Match_columns 130
No_of_seqs 23 out of 25
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 13:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046572.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046572hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04547 Anoctamin: Calcium-ac 48.0 57 0.0012 27.2 5.7 45 68-119 27-79 (452)
2 PF00342 PGI: Phosphoglucose i 44.1 7.7 0.00017 34.1 0.0 30 18-54 424-453 (486)
3 PF14975 DUF4512: Domain of un 40.5 33 0.00072 24.9 2.8 34 92-125 4-38 (88)
4 PF08636 Pkr1: ER protein Pkr1 39.5 17 0.00037 25.6 1.2 28 47-76 16-43 (75)
5 cd05016 SIS_PGI_2 Phosphogluco 38.7 11 0.00024 28.6 0.2 30 18-54 123-152 (164)
6 PRK03868 glucose-6-phosphate i 37.4 12 0.00027 32.1 0.3 30 18-54 365-394 (410)
7 KOG4474 Uncharacterized conser 37.2 72 0.0016 27.0 4.7 50 8-75 49-98 (253)
8 PF07947 YhhN: YhhN-like prote 36.7 1E+02 0.0023 22.4 5.0 66 48-113 39-105 (185)
9 PRK14097 pgi glucose-6-phospha 35.6 15 0.00033 32.0 0.5 33 18-57 390-422 (448)
10 PF00211 Guanylate_cyc: Adenyl 33.4 4.8 0.0001 28.1 -2.4 44 17-62 104-151 (184)
11 PRK00973 glucose-6-phosphate i 31.7 19 0.00042 31.5 0.5 31 18-55 385-415 (446)
12 cd05798 SIS_TAL_PGI SIS_TAL_PG 31.5 18 0.00038 27.2 0.3 30 18-54 88-117 (129)
13 cd07302 CHD cyclase homology d 30.7 10 0.00022 25.1 -1.0 28 29-56 115-142 (177)
14 PF03189 Otopetrin: Otopetrin; 29.2 78 0.0017 27.5 3.8 72 53-128 230-317 (441)
15 PF11241 DUF3043: Protein of u 28.1 3.1E+02 0.0067 21.8 6.9 59 56-115 71-130 (170)
16 PRK11513 cytochrome b561; Prov 27.8 81 0.0017 23.7 3.3 29 92-121 146-174 (176)
17 cd03381 PAP2_glucose_6_phospha 27.3 2E+02 0.0042 23.3 5.6 68 55-129 67-143 (235)
18 smart00044 CYCc Adenylyl- / gu 27.1 14 0.0003 26.3 -0.9 26 31-56 152-177 (194)
19 PRK13735 conjugal transfer mat 26.6 1.1E+02 0.0024 29.8 4.7 72 29-110 1-74 (942)
20 PF09919 DUF2149: Uncharacteri 25.9 62 0.0013 23.0 2.2 17 65-81 11-27 (92)
21 PF13127 DUF3955: Protein of u 25.6 77 0.0017 21.1 2.5 21 63-83 43-63 (63)
22 KOG1519 Predicted mitochondria 23.7 49 0.0011 28.5 1.6 55 34-90 190-252 (297)
23 PF14110 DUF4282: Domain of un 23.7 2.5E+02 0.0053 19.2 5.5 17 94-110 57-73 (90)
24 PF10176 DUF2370: Protein of u 22.6 1.6E+02 0.0035 24.4 4.3 75 6-80 104-213 (233)
25 KOG2887 Membrane protein invol 22.0 1.4E+02 0.003 24.2 3.7 40 63-102 55-94 (175)
26 PF10549 ORF11CD3: ORF11CD3 do 21.0 1.8E+02 0.0039 19.4 3.6 35 76-117 12-49 (57)
27 PF13038 DUF3899: Domain of un 20.6 99 0.0022 20.6 2.3 16 62-77 7-22 (92)
No 1
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=47.95 E-value=57 Score=27.18 Aligned_cols=45 Identities=36% Similarity=0.792 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhh----cchhhhhhhhhhhHhHHHHHHHHHHHH----HhhhhHHhhHhh
Q 046572 68 FAIGFLIFMVSFV----KDKEFQSFFAKGCVVLLIFMASWRVYF----ERRVEYLAWDWL 119 (130)
Q Consensus 68 FaIGfllfMVafV----kdrefqsFfakgc~~Lhv~mA~WR~~F----erk~edLA~dwp 119 (130)
-.+|++.+..... -|.++..+|| ++|++|-..| .||=..+|..|-
T Consensus 27 ai~G~~~~~~~~~~~~~~~~~~~~~fa-------i~~~~W~~~fle~Wkr~~~~l~~~Wg 79 (452)
T PF04547_consen 27 AIFGLIVFLYGLSFSYLFDNPFTPFFA-------IFMSLWATLFLEFWKRKEAELAYRWG 79 (452)
T ss_pred HHHHHHHHHHHHhcccccccchhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666665 3444444444 6789998865 577778888884
No 2
>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment.; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....
Probab=44.06 E-value=7.7 Score=34.11 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=22.1
Q ss_pred HHhhchhhheeehhhhhcccchHHHHHhhCCCcccch
Q 046572 18 ALTSGALMMFKMKEIYTLTHGAETATKLLGSNPHDQL 54 (130)
Q Consensus 18 AlT~G~LMmFy~kei~vfgHG~etA~KL~GSTPhDqL 54 (130)
+-|.|+||+||..++.+-| .|.|-.|-||-
T Consensus 424 ~~~lG~Lia~yE~~~~v~g-------~l~~INpFDQp 453 (486)
T PF00342_consen 424 PYSLGALIAFYEHKTFVQG-------YLWGINPFDQP 453 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHTS-TT--G
T ss_pred chHHHHHHHHHHHHHHHhh-------hhcCcCCCCCc
Confidence 4588999999999998866 67777777774
No 3
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=40.46 E-value=33 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.450 Sum_probs=27.9
Q ss_pred hhHhHHHHHHHHHHHHHhhhhHHhhHhh-hhhhhh
Q 046572 92 GCVVLLIFMASWRVYFERRVEYLAWDWL-RKTVGD 125 (130)
Q Consensus 92 gc~~Lhv~mA~WR~~Ferk~edLA~dwp-rq~vGD 125 (130)
=|+++=+++.+|+.|-|.-+--+--.|| |.++++
T Consensus 4 PCivIPvLLwIykkFlqP~i~~~~spw~~k~~~~~ 38 (88)
T PF14975_consen 4 PCIVIPVLLWIYKKFLQPYIYPFWSPWPKKKAVQE 38 (88)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCccchhhhhcc
Confidence 3899999999999999988877766698 666655
No 4
>PF08636 Pkr1: ER protein Pkr1; InterPro: IPR013945 Pkr1 has been identified as an ER protein of unknown function.
Probab=39.47 E-value=17 Score=25.60 Aligned_cols=28 Identities=36% Similarity=0.694 Sum_probs=22.1
Q ss_pred CCCcccchheeccccchhHHHHHHHHHHHH
Q 046572 47 GSNPHDQLLIRTSDSFSGLLLFAIGFLIFM 76 (130)
Q Consensus 47 GSTPhDqLLI~tSdSFsGLLLFaIGfllfM 76 (130)
|+|| ++++-|.-||.+|++.-++.+..+
T Consensus 16 G~tp--~li~a~n~sF~~L~~~l~~Ll~~t 43 (75)
T PF08636_consen 16 GTTP--TLIIATNVSFAALFLVLLALLFLT 43 (75)
T ss_pred CCCh--HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455 899999999999998877766554
No 5
>cd05016 SIS_PGI_2 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the second SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=38.66 E-value=11 Score=28.63 Aligned_cols=30 Identities=37% Similarity=0.432 Sum_probs=24.0
Q ss_pred HHhhchhhheeehhhhhcccchHHHHHhhCCCcccch
Q 046572 18 ALTSGALMMFKMKEIYTLTHGAETATKLLGSNPHDQL 54 (130)
Q Consensus 18 AlT~G~LMmFy~kei~vfgHG~etA~KL~GSTPhDqL 54 (130)
+-+.|+||++|...+.+-| .+.|-.|-||-
T Consensus 123 ~~~lG~L~~~yE~~t~~~G-------~l~gINpFDQp 152 (164)
T cd05016 123 PYTLGALLALYEHKTAVQG-------ALLGINPFDQP 152 (164)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhcCcCCCCCh
Confidence 4578999999987776654 78899999984
No 6
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=37.41 E-value=12 Score=32.10 Aligned_cols=30 Identities=27% Similarity=0.323 Sum_probs=24.8
Q ss_pred HHhhchhhheeehhhhhcccchHHHHHhhCCCcccch
Q 046572 18 ALTSGALMMFKMKEIYTLTHGAETATKLLGSNPHDQL 54 (130)
Q Consensus 18 AlT~G~LMmFy~kei~vfgHG~etA~KL~GSTPhDqL 54 (130)
+-|.|.||+||...+.+.| .|+|-.|-||-
T Consensus 365 ~~~lG~L~~~yE~~t~~~g-------~l~~INpFDQp 394 (410)
T PRK03868 365 EFSIGYLIYYYELLTSAVG-------KMLGINTYDQP 394 (410)
T ss_pred HHHHHHHHHHHHHHHHHHh-------hhcCcCCCCCc
Confidence 5688999999988877765 78899999984
No 7
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.24 E-value=72 Score=26.98 Aligned_cols=50 Identities=30% Similarity=0.431 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhchhhheeehhhhhcccchHHHHHhhCCCcccchheeccccchhHHHHHHHHHHH
Q 046572 8 VVICLLHSVIALTSGALMMFKMKEIYTLTHGAETATKLLGSNPHDQLLIRTSDSFSGLLLFAIGFLIF 75 (130)
Q Consensus 8 ~~iCiLHS~iAlT~G~LMmFy~kei~vfgHG~etA~KL~GSTPhDqLLI~tSdSFsGLLLFaIGfllf 75 (130)
..+|.+||+|+-+.-.+-+.+..| .++-+.+..++.+ .=+++|..|.++.
T Consensus 49 ~~VSl~HS~Isg~~a~~~l~~~~~---~~~~~~~~~s~~~---------------~~l~~fS~gYfiy 98 (253)
T KOG4474|consen 49 LTVSLLHSTISGLWALLSLLYDPE---MVDDPITYHSLSA---------------YQLLLFSAGYFIY 98 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCcc---cccCHHHHHhhhh---------------HHHHHHHHHHHHH
Confidence 367999999999999999998883 4666666666554 4466777776543
No 8
>PF07947 YhhN: YhhN-like protein; InterPro: IPR012506 The members of this family are similar to the hypothetical protein yhhN expressed by Escherichia coli (P37616 from SWISSPROT). Many of the members of this family are annotated as being possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. ; GO: 0016021 integral to membrane
Probab=36.69 E-value=1e+02 Score=22.36 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=37.5
Q ss_pred CCcccchheeccccc-hhHHHHHHHHHHHHHHhhcchhhhhhhhhhhHhHHHHHHHHHHHHHhhhhH
Q 046572 48 SNPHDQLLIRTSDSF-SGLLLFAIGFLIFMVSFVKDKEFQSFFAKGCVVLLIFMASWRVYFERRVEY 113 (130)
Q Consensus 48 STPhDqLLI~tSdSF-sGLLLFaIGfllfMVafVkdrefqsFfakgc~~Lhv~mA~WR~~Ferk~ed 113 (130)
|.-=|=+|.+-.+.| -|+..|++|=+.+..+|.+.+.++..-..-...+-+.....-..+.+++++
T Consensus 39 s~~GD~~L~~~~~~f~~Gl~~F~~ahi~Y~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 105 (185)
T PF07947_consen 39 SALGDVLLLDNKNFFLAGLGAFLLAHICYIIAFLRRRRFSPLSWLLFAILLLIAIVVFALLLPRLGA 105 (185)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHccchh
Confidence 334455666444444 589999999999999999444444443333333333333333334444443
No 9
>PRK14097 pgi glucose-6-phosphate isomerase; Provisional
Probab=35.57 E-value=15 Score=32.00 Aligned_cols=33 Identities=36% Similarity=0.348 Sum_probs=25.5
Q ss_pred HHhhchhhheeehhhhhcccchHHHHHhhCCCcccchhee
Q 046572 18 ALTSGALMMFKMKEIYTLTHGAETATKLLGSNPHDQLLIR 57 (130)
Q Consensus 18 AlT~G~LMmFy~kei~vfgHG~etA~KL~GSTPhDqLLI~ 57 (130)
+-|.|.||+||...+.+.| .|.|-.|-||-=++
T Consensus 390 ~~~lG~L~~~yE~~t~~~G-------~l~gINpFDQpGVE 422 (448)
T PRK14097 390 EYTFGYLVYFFEKACAISG-------YLLGVNPFDQPGVE 422 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH-------hhcCcCCCCCccHH
Confidence 4678999999998887765 68888888885443
No 10
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=33.40 E-value=4.8 Score=28.14 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=32.0
Q ss_pred HHHhhchhhhee----ehhhhhcccchHHHHHhhCCCcccchheeccccc
Q 046572 17 IALTSGALMMFK----MKEIYTLTHGAETATKLLGSNPHDQLLIRTSDSF 62 (130)
Q Consensus 17 iAlT~G~LMmFy----~kei~vfgHG~etA~KL~GSTPhDqLLI~tSdSF 62 (130)
|++++|-.+.-. ..+..++|...+.|.+|...+|.++.+| |++.
T Consensus 104 IGI~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~~i~v--s~~v 151 (184)
T PF00211_consen 104 IGIHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPGQILV--SEEV 151 (184)
T ss_dssp EEEEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTTSEEE--EHHH
T ss_pred ccccccccccccccCcccceeeeehhhhhhHHHHHhhccccccc--CHHH
Confidence 345566554432 3567899999999999999999999777 5443
No 11
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=31.68 E-value=19 Score=31.54 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=24.1
Q ss_pred HHhhchhhheeehhhhhcccchHHHHHhhCCCcccchh
Q 046572 18 ALTSGALMMFKMKEIYTLTHGAETATKLLGSNPHDQLL 55 (130)
Q Consensus 18 AlT~G~LMmFy~kei~vfgHG~etA~KL~GSTPhDqLL 55 (130)
+-|.|.||+||...+.+.| .|+|-.|-||-=
T Consensus 385 ~~~lG~L~~~~E~~t~~~G-------~llgINpFDQPG 415 (446)
T PRK00973 385 EYTVGQLFYMYEMQTAFMG-------ELLNINAFDQPG 415 (446)
T ss_pred HHHHHHHHHHHHHHHHHHh-------hhcCcCCCCCcc
Confidence 5688999999998887766 577777777743
No 12
>cd05798 SIS_TAL_PGI SIS_TAL_PGI: Transaldolase (TAL)/ Phosphoglucose isomerase (PGI). This group represents the SIS (Sugar ISomerase) PGI domain, of a multifunctional protein (TAL-PGI ) having both TAL and PGI activities. TAL_PGI contains an N-terminal TAL domain and a C-terminal PGI domain. TAL catalyzes the reversible conversion of sedoheptulose-7-phosphate (S7P) and glyceraldehyde-3-phosphate (G3P), to fructose-6-phosphate (F6P) and erythrose-4-phosphate (E4P). PGI catalyzes the reversible isomerization of F6P to glucose-6-phosphate (G6P). It has been suggested for Gluconobacter oxydans TAL_PGI that this enzyme generates E4P and G6P directly from S7P and G3P. G. oxydans TAL_PGI contributes to increased xylitol production from D-arabitol. As xylitol is an alternative natural sweetner to sucrose, the microbial conversion of D-arabitol to xylitol is of interest to food and pharmaceutical industries.
Probab=31.47 E-value=18 Score=27.22 Aligned_cols=30 Identities=30% Similarity=0.247 Sum_probs=23.5
Q ss_pred HHhhchhhheeehhhhhcccchHHHHHhhCCCcccch
Q 046572 18 ALTSGALMMFKMKEIYTLTHGAETATKLLGSNPHDQL 54 (130)
Q Consensus 18 AlT~G~LMmFy~kei~vfgHG~etA~KL~GSTPhDqL 54 (130)
+-+.|.||++|..... ++-.++|-.|-||=
T Consensus 88 ~~~lG~l~~~~e~ata-------~~g~llgINpFDQP 117 (129)
T cd05798 88 AYDLGQEFFRWEMATA-------VAGAVLGINPFDQP 117 (129)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHhcCcCCCCCc
Confidence 4578999988876555 46689999999994
No 13
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=30.75 E-value=10 Score=25.15 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=24.3
Q ss_pred ehhhhhcccchHHHHHhhCCCcccchhe
Q 046572 29 MKEIYTLTHGAETATKLLGSNPHDQLLI 56 (130)
Q Consensus 29 ~kei~vfgHG~etA~KL~GSTPhDqLLI 56 (130)
.++..++|-...+|.+|.-..|..|+++
T Consensus 115 ~~~~~~~G~~v~~A~rl~~~a~~~~i~v 142 (177)
T cd07302 115 RPEYTVIGDTVNLAARLESLAKPGQILV 142 (177)
T ss_pred CcceeEecchHhHHHHHHhcCCCCEEEE
Confidence 4567889999999999999999888776
No 14
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=29.24 E-value=78 Score=27.51 Aligned_cols=72 Identities=19% Similarity=0.483 Sum_probs=40.0
Q ss_pred chheecccc----chhHHHHHHHHHHHHHHhh--cchhhhh-----hhhhhhH-----hHHHHHHHHHHHHHhhhhHHhh
Q 046572 53 QLLIRTSDS----FSGLLLFAIGFLIFMVSFV--KDKEFQS-----FFAKGCV-----VLLIFMASWRVYFERRVEYLAW 116 (130)
Q Consensus 53 qLLI~tSdS----FsGLLLFaIGfllfMVafV--kdrefqs-----Ffakgc~-----~Lhv~mA~WR~~Ferk~edLA~ 116 (130)
+.=++-+.+ |.|++++.+|++.+++.|| +|++++. +..-.++ ++=+..|+|| -|+++- ..
T Consensus 230 ~~~vdc~~a~~Glf~Gil~lv~tii~lilf~v~~~~~~~~~~A~~~~~i~~~~l~~l~~~a~i~g~~~---~r~l~~-~~ 305 (441)
T PF03189_consen 230 HISVDCSGASKGLFLGILVLVATIIVLILFFVLINDPEYSELAILLVYIFELVLYSLSILAVIIGIYR---MRKLKF-SS 305 (441)
T ss_pred ceeEEeCCcchhHHHHHHHHHHHHHHhehhhheecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhccc-cc
Confidence 344555554 6777888888888887765 4555422 1222222 2223445555 344433 34
Q ss_pred Hhhhhhhhhhhh
Q 046572 117 DWLRKTVGDVLL 128 (130)
Q Consensus 117 dwprq~vGDi~l 128 (130)
..|...+-|++|
T Consensus 306 ~~~~~~LD~iLL 317 (441)
T PF03189_consen 306 KNPGRSLDVILL 317 (441)
T ss_pred cCccccHhHHHH
Confidence 577777777765
No 15
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=28.06 E-value=3.1e+02 Score=21.80 Aligned_cols=59 Identities=19% Similarity=0.341 Sum_probs=45.1
Q ss_pred eeccccchhHHHHHHHHHHHHHHhh-cchhhhhhhhhhhHhHHHHHHHHHHHHHhhhhHHh
Q 046572 56 IRTSDSFSGLLLFAIGFLIFMVSFV-KDKEFQSFFAKGCVVLLIFMASWRVYFERRVEYLA 115 (130)
Q Consensus 56 I~tSdSFsGLLLFaIGfllfMVafV-kdrefqsFfakgc~~Lhv~mA~WR~~Ferk~edLA 115 (130)
|+.--|+++++|.. .++++.++|+ ..++.|.+-.-+..++-+.+++.-++.-|++....
T Consensus 71 VDsR~~i~e~fmP~-alv~lv~~~v~~~~~~~~~~~~~~~~~~~~~iid~~~l~r~vkk~v 130 (170)
T PF11241_consen 71 VDSRRNIGEFFMPV-ALVLLVLSFVVPSPQVQLYVTLAMYVLLLLVIIDGVILGRRVKKRV 130 (170)
T ss_pred hhcccchHHHHHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777776654 4555566677 88999999999998888999999999988887643
No 16
>PRK11513 cytochrome b561; Provisional
Probab=27.78 E-value=81 Score=23.73 Aligned_cols=29 Identities=24% Similarity=0.036 Sum_probs=22.3
Q ss_pred hhHhHHHHHHHHHHHHHhhhhHHhhHhhhh
Q 046572 92 GCVVLLIFMASWRVYFERRVEYLAWDWLRK 121 (130)
Q Consensus 92 gc~~Lhv~mA~WR~~Ferk~edLA~dwprq 121 (130)
.-+.+|+..|+|.-|..|. +.|.+=+||.
T Consensus 146 ~li~lHvaaAL~H~~i~kD-~~L~RMl~~~ 174 (176)
T PRK11513 146 FVIGLHAAAALAHHYFWKD-NTLLRMMPRK 174 (176)
T ss_pred HHHHHHHHHHHHHHHHccc-cHHHHhcccc
Confidence 4578899999998776655 7777777764
No 17
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=27.29 E-value=2e+02 Score=23.32 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=40.0
Q ss_pred heeccccc-hhHHHHHHHHHHHHHHh----hcch----hhhhhhhhhhHhHHHHHHHHHHHHHhhhhHHhhHhhhhhhhh
Q 046572 55 LIRTSDSF-SGLLLFAIGFLIFMVSF----VKDK----EFQSFFAKGCVVLLIFMASWRVYFERRVEYLAWDWLRKTVGD 125 (130)
Q Consensus 55 LI~tSdSF-sGLLLFaIGfllfMVaf----Vkdr----efqsFfakgc~~Lhv~mA~WR~~Ferk~edLA~dwprq~vGD 125 (130)
--.|+.|| ||=..-+.++..+++.. .+.| ..+....-.++.+=+.+++=|+| |+..||-|++|=
T Consensus 67 ~c~tgysfPSGHam~a~a~~~~l~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~V~~SRvY-------LgvHfpsDVlaG 139 (235)
T cd03381 67 TCETGPGSPSGHAMGTTAVLLVMVTALLSHLAGRKRSRFLRVMLWLVFWGVQLAVCLSRIY-------LAAHFPHQVIAG 139 (235)
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHh-------hcCCCHHHHHHH
Confidence 44566666 67666665555555433 2322 12222233444555667777877 688999999987
Q ss_pred hhhc
Q 046572 126 VLLA 129 (130)
Q Consensus 126 i~la 129 (130)
++++
T Consensus 140 ~~lG 143 (235)
T cd03381 140 VISG 143 (235)
T ss_pred HHHH
Confidence 7654
No 18
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=27.08 E-value=14 Score=26.35 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=23.4
Q ss_pred hhhhcccchHHHHHhhCCCcccchhe
Q 046572 31 EIYTLTHGAETATKLLGSNPHDQLLI 56 (130)
Q Consensus 31 ei~vfgHG~etA~KL~GSTPhDqLLI 56 (130)
+..++|-..++|.+|...++.+|+++
T Consensus 152 ~~~~~G~~vn~AarL~~~a~~g~i~v 177 (194)
T smart00044 152 RYCLFGDTVNLASRMESVGDPGQILV 177 (194)
T ss_pred eeEEeChHHHHHHHHHhcCCCCeEEE
Confidence 57789999999999999999998765
No 19
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=26.64 E-value=1.1e+02 Score=29.85 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=45.2
Q ss_pred ehhhhhcccchHHHHHhhCCCcccchheeccccchhHHHH--HHHHHHHHHHhhcchhhhhhhhhhhHhHHHHHHHHHHH
Q 046572 29 MKEIYTLTHGAETATKLLGSNPHDQLLIRTSDSFSGLLLF--AIGFLIFMVSFVKDKEFQSFFAKGCVVLLIFMASWRVY 106 (130)
Q Consensus 29 ~kei~vfgHG~etA~KL~GSTPhDqLLI~tSdSFsGLLLF--aIGfllfMVafVkdrefqsFfakgc~~Lhv~mA~WR~~ 106 (130)
|-|||++|=|-=...-|-+- -.|=.|++|.+|+=+ .||++..++.|+|.|+...| .|.+ -+++.+| +.
T Consensus 1 m~eIYt~ggGe~l~~VfNAV-----A~~~gs~~f~sl~~Ialligvi~~~~~~i~~~n~~~~-~kW~---~~~~li~-~L 70 (942)
T PRK13735 1 MNEVYVIAGGEWLRNNLNAI-----AAFMGTRTWDSIEKIALTLSVLAVAVMWVQRHNVMDL-LGWV---AVFVLIS-LL 70 (942)
T ss_pred CeEEEEeccHHHHHHHHHHH-----HHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcCCHHHH-HHHH---HHHHHHH-Hh
Confidence 45888888664332222211 123356789988644 57888889999999999876 3333 2556666 66
Q ss_pred HHhh
Q 046572 107 FERR 110 (130)
Q Consensus 107 Ferk 110 (130)
+--|
T Consensus 71 ~~Pk 74 (942)
T PRK13735 71 VNVR 74 (942)
T ss_pred cccc
Confidence 6555
No 20
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=25.94 E-value=62 Score=23.04 Aligned_cols=17 Identities=35% Similarity=0.680 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhc
Q 046572 65 LLLFAIGFLIFMVSFVK 81 (130)
Q Consensus 65 LLLFaIGfllfMVafVk 81 (130)
.|.||.|||+++++.-.
T Consensus 11 ~LVfav~llvalv~~~n 27 (92)
T PF09919_consen 11 MLVFAVGLLVALVMSWN 27 (92)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 57899999999986543
No 21
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=25.60 E-value=77 Score=21.14 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHhhcch
Q 046572 63 SGLLLFAIGFLIFMVSFVKDK 83 (130)
Q Consensus 63 sGLLLFaIGfllfMVafVkdr 83 (130)
-|.+++.+|.+.+.+.++|.|
T Consensus 43 lg~l~~~~g~~~~i~~~~~~~ 63 (63)
T PF13127_consen 43 LGYLFLLIGIISLIIYLIKKR 63 (63)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 588899999999998888765
No 22
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only]
Probab=23.68 E-value=49 Score=28.53 Aligned_cols=55 Identities=33% Similarity=0.475 Sum_probs=42.3
Q ss_pred hcccchHHHHHhhCCCcccchheeccccch-hHHHHHHHHHHHHHHhhcch-------hhhhhhh
Q 046572 34 TLTHGAETATKLLGSNPHDQLLIRTSDSFS-GLLLFAIGFLIFMVSFVKDK-------EFQSFFA 90 (130)
Q Consensus 34 vfgHG~etA~KL~GSTPhDqLLI~tSdSFs-GLLLFaIGfllfMVafVkdr-------efqsFfa 90 (130)
.+|-|..++..|--.|.|.|-||. |=-+ |||=-.+||+.|=..-||.| |||||+.
T Consensus 190 f~~l~~P~k~~LPtatt~~ahLv~--DFiAG~LLGA~l~~~FFPi~VvKt~MQsqiG~efqS~~K 252 (297)
T KOG1519|consen 190 FFGLRGPIKEHLPTATTHSAHLVN--DFIAGGLLGAMLGFLFFPINVVKTRMQSQIGGEFQSFPK 252 (297)
T ss_pred hhhccccccccCCchhhHHHHHHH--HHhhhhHHHHHHHHhhccHHHHHHHHHHHhCccccchHH
Confidence 366677777777777788888873 4344 45667799999999999987 8999985
No 23
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=23.66 E-value=2.5e+02 Score=19.18 Aligned_cols=17 Identities=24% Similarity=0.465 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHHHHhh
Q 046572 94 VVLLIFMASWRVYFERR 110 (130)
Q Consensus 94 ~~Lhv~mA~WR~~Ferk 110 (130)
...=.....||+++|-=
T Consensus 57 ~~~l~~~i~~Ri~~E~~ 73 (90)
T PF14110_consen 57 LGFLLGIILWRIMLEFL 73 (90)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344567899999953
No 24
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=22.55 E-value=1.6e+02 Score=24.42 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHhhchhh---------heeehhh--hhcccchHHHHHhhCCCcccc---------------------
Q 046572 6 AFVVICLLHSVIALTSGALM---------MFKMKEI--YTLTHGAETATKLLGSNPHDQ--------------------- 53 (130)
Q Consensus 6 ~f~~iCiLHS~iAlT~G~LM---------mFy~kei--~vfgHG~etA~KL~GSTPhDq--------------------- 53 (130)
.|.+.++||+.+|-=-|++- -|++|-- ..-+...+...+..-+.|.+-
T Consensus 104 GFllty~l~tthAar~Gs~aGlGltli~~~~~~~~~~~~~~~~~~~~~~~~~~~dPn~~d~~~~~~~~~~~~d~~~s~~~ 183 (233)
T PF10176_consen 104 GFLLTYCLHTTHAARYGSRAGLGLTLIKYGLIMRPSTVTSKGGKDDPPGRIEPPDPNSYDFDPSSVNAGGTVDGFTSSLS 183 (233)
T ss_pred HHHHHHHHhcchHhhccchhhchHHHHhhhheEeeccCCCCCCCCCCcCccCCCCCccccCCcccccCCCCCCCCccCcC
Confidence 57788899999998877642 1233322 233444444444433333111
Q ss_pred ---hheeccccchhHHHHHHHHHHHHHHhh
Q 046572 54 ---LLIRTSDSFSGLLLFAIGFLIFMVSFV 80 (130)
Q Consensus 54 ---LLI~tSdSFsGLLLFaIGfllfMVafV 80 (130)
..-..+.++-..+|.++|++|+.-+++
T Consensus 184 ~~~~~~~~~~~wla~~Lm~~G~fI~irsi~ 213 (233)
T PF10176_consen 184 HGTDEASQSNPWLAYILMAFGWFIFIRSII 213 (233)
T ss_pred CcccccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 112334456678899999999986654
No 25
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.03 E-value=1.4e+02 Score=24.20 Aligned_cols=40 Identities=23% Similarity=0.447 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHhhcchhhhhhhhhhhHhHHHHHHH
Q 046572 63 SGLLLFAIGFLIFMVSFVKDKEFQSFFAKGCVVLLIFMAS 102 (130)
Q Consensus 63 sGLLLFaIGfllfMVafVkdrefqsFfakgc~~Lhv~mA~ 102 (130)
+|++.|.++..+|-|--+|-|.|--+|--||.+.=.+-|.
T Consensus 55 ~gv~c~~l~~~lf~v~~~~~~kFal~~TlGnll~i~sf~f 94 (175)
T KOG2887|consen 55 GGVLCFLLAMVLFPVLVVSPRKFALLYTLGNLLAIGSFAF 94 (175)
T ss_pred HHHHHHHHHHHHHHhcccccceeehhHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999887665554
No 26
>PF10549 ORF11CD3: ORF11CD3 domain; InterPro: IPR018877 This entry represents the carboxy-terminal domain from ORF11 (Q9XJS9 from SWISSPROT), one of the proteins of Pseudomonas phage D3 (Bacteriophage D3). The function of these proteins are unknown [].
Probab=20.97 E-value=1.8e+02 Score=19.40 Aligned_cols=35 Identities=23% Similarity=0.548 Sum_probs=27.6
Q ss_pred HHHhhcchhhhhhhhhhhHhHHHHHHHHHHH---HHhhhhHHhhH
Q 046572 76 MVSFVKDKEFQSFFAKGCVVLLIFMASWRVY---FERRVEYLAWD 117 (130)
Q Consensus 76 MVafVkdrefqsFfakgc~~Lhv~mA~WR~~---Ferk~edLA~d 117 (130)
|.-|-+++++-|++++| ++-||.. .+.|++.|+..
T Consensus 12 c~e~~~~K~~AS~~Grg-------L~~Wk~~Kp~l~~ki~~l~~~ 49 (57)
T PF10549_consen 12 CAEYKKEKDIASLCGRG-------LNRWKWKKPQLEQKIEELEEQ 49 (57)
T ss_pred HHHHHhHHHHHHHHhHH-------HHHHHHhhHHHHHHHHHHHHH
Confidence 44567899999999998 7889874 78888877654
No 27
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=20.65 E-value=99 Score=20.60 Aligned_cols=16 Identities=38% Similarity=0.802 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHHHHH
Q 046572 62 FSGLLLFAIGFLIFMV 77 (130)
Q Consensus 62 FsGLLLFaIGfllfMV 77 (130)
..|++++.||+.++++
T Consensus 7 l~~l~lliig~~~~v~ 22 (92)
T PF13038_consen 7 LVGLILLIIGGFLFVF 22 (92)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3688999999988875
Done!