Query 046572
Match_columns 130
No_of_seqs 23 out of 25
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 23:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bww_A Protein of unknown func 39.2 5.3 0.00018 32.8 -0.5 33 29-61 200-245 (307)
2 1nkz_B Light-harvesting protei 27.8 33 0.0011 21.0 1.9 23 83-105 9-38 (41)
3 2vty_A Protein F1, F1L; BCL-2, 24.0 57 0.002 25.3 3.1 27 97-123 57-83 (182)
4 1skh_A Major prion protein 2; 23.4 38 0.0013 19.9 1.5 14 91-104 6-19 (30)
5 1lgh_B LH II, B800/850, light 23.2 45 0.0015 20.8 1.9 22 83-104 14-42 (45)
6 1dx7_A Light-harvesting protei 18.2 44 0.0015 21.0 1.1 23 82-104 16-45 (48)
7 3ljk_A Glucose-6-phosphate iso 17.8 30 0.001 30.2 0.3 19 18-36 473-491 (543)
8 3mr7_A Adenylate/guanylate cyc 17.8 8 0.00027 26.7 -2.7 32 31-64 109-140 (189)
9 4em6_D Glucose-6-phosphate iso 17.6 30 0.001 30.2 0.3 19 18-36 482-500 (553)
10 3ff1_A Glucose-6-phosphate iso 17.3 31 0.001 29.2 0.3 30 18-54 388-417 (446)
No 1
>3bww_A Protein of unknown function DUF692/COG3220; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.20A {Haemophilus somnus}
Probab=39.17 E-value=5.3 Score=32.79 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=6.1
Q ss_pred ehhhhhcccchHH------------HHHhhCCCccc-chheecccc
Q 046572 29 MKEIYTLTHGAET------------ATKLLGSNPHD-QLLIRTSDS 61 (130)
Q Consensus 29 ~kei~vfgHG~et------------A~KL~GSTPhD-qLLI~tSdS 61 (130)
-.||.+=||..|. -+|.+|-+||+ +++|+|-+.
T Consensus 200 V~eiHlAGh~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lliDTH~~ 245 (307)
T 3bww_A 200 VNYIHIAGHDDEHAATEVQIQTSESFNKIKGDLRHLPPLLVDTHGE 245 (307)
T ss_dssp EEEEEECC--------------------------------------
T ss_pred hEEEeccCCccccccccccccccccccccccccccCCCeeEECCCC
Confidence 3578888996544 47999999999 699999764
No 2
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=27.84 E-value=33 Score=21.00 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=16.0
Q ss_pred hhhhhhhhhh-------hHhHHHHHHHHHH
Q 046572 83 KEFQSFFAKG-------CVVLLIFMASWRV 105 (130)
Q Consensus 83 refqsFfakg-------c~~Lhv~mA~WR~ 105 (130)
+||++.|-+| +++-|++.-.||=
T Consensus 9 ~EfH~~~~~~~~~F~~iA~vAH~l~w~wrP 38 (41)
T 1nkz_B 9 EELHKYVIDGTRVFLGLALVAHFLAFSATP 38 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4666666665 4677888888873
No 3
>2vty_A Protein F1, F1L; BCL-2, apoptosis; 2.10A {Vaccinia virus}
Probab=23.96 E-value=57 Score=25.27 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhhHHhhHhhhhhh
Q 046572 97 LIFMASWRVYFERRVEYLAWDWLRKTV 123 (130)
Q Consensus 97 hv~mA~WR~~Ferk~edLA~dwprq~v 123 (130)
||.||+--..=.+|++||-+..|..+-
T Consensus 57 hvmmav~yym~kqrlddlyrqlptktr 83 (182)
T 2vty_A 57 HVMMAVRYYMSKQRLDDLYRQLPTKTR 83 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCccch
Confidence 999999877788999999999997653
No 4
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=23.44 E-value=38 Score=19.94 Aligned_cols=14 Identities=36% Similarity=0.888 Sum_probs=12.5
Q ss_pred hhhHhHHHHHHHHH
Q 046572 91 KGCVVLLIFMASWR 104 (130)
Q Consensus 91 kgc~~Lhv~mA~WR 104 (130)
-||++|-.++|.|-
T Consensus 6 ~~cwilvLfva~ws 19 (30)
T 1skh_A 6 IGSWILVLFVAMWS 19 (30)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 58999999999994
No 5
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=23.19 E-value=45 Score=20.79 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=15.0
Q ss_pred hhhhhhhhhh-------hHhHHHHHHHHH
Q 046572 83 KEFQSFFAKG-------CVVLLIFMASWR 104 (130)
Q Consensus 83 refqsFfakg-------c~~Lhv~mA~WR 104 (130)
+||++.|-+| +++-|++.-.||
T Consensus 14 ~EfH~~~~~~~~~F~~iA~vAH~L~~~wr 42 (45)
T 1lgh_B 14 IAVHDQFKTTFSAFIILAAVAHVLVWVWK 42 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666555 456788888887
No 6
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=18.22 E-value=44 Score=21.04 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=15.9
Q ss_pred chhhhhhhhhh-------hHhHHHHHHHHH
Q 046572 82 DKEFQSFFAKG-------CVVLLIFMASWR 104 (130)
Q Consensus 82 drefqsFfakg-------c~~Lhv~mA~WR 104 (130)
.+||++.|-+| +++-|++.-.||
T Consensus 16 A~EfH~~~~~~~~~F~~iA~vAH~l~w~wr 45 (48)
T 1dx7_A 16 AQELHSVYMSGLWLFSAVAIVAHLAVYIWR 45 (48)
T ss_dssp HHHHTHHHHHHHHHHTTHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666666665 466788888876
No 7
>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733, cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES; 1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A* 3q88_A*
Probab=17.81 E-value=30 Score=30.18 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.2
Q ss_pred HHhhchhhheeehhhhhcc
Q 046572 18 ALTSGALMMFKMKEIYTLT 36 (130)
Q Consensus 18 AlT~G~LMmFy~kei~vfg 36 (130)
+-|.|+|+.||...+.+-|
T Consensus 473 p~~lG~LialyEh~v~v~G 491 (543)
T 3ljk_A 473 PYSLGALIALYEHKIFVQG 491 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4578999999999988766
No 8
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}
Probab=17.75 E-value=8 Score=26.70 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=26.3
Q ss_pred hhhhcccchHHHHHhhCCCcccchheeccccchh
Q 046572 31 EIYTLTHGAETATKLLGSNPHDQLLIRTSDSFSG 64 (130)
Q Consensus 31 ei~vfgHG~etA~KL~GSTPhDqLLI~tSdSFsG 64 (130)
+-.++|....+|.+|...++..| |..|++.--
T Consensus 109 ~~~~~G~~Vn~AaRl~~~a~~~~--I~vs~~~~~ 140 (189)
T 3mr7_A 109 DGDIFGDAVNVAARLEAISEPGA--ICVSDIVHQ 140 (189)
T ss_dssp SSCEESHHHHHHHHHHHHSCTTC--EEEEHHHHH
T ss_pred CCeEEChHHHHHHHHHhhCCCCe--EEECHHHHH
Confidence 66889999999999999999998 556666543
No 9
>4em6_D Glucose-6-phosphate isomerase; GPI, phosphoglucose isomerase phosphohexose isomerase, PHI, ssgcid; 1.90A {Brucella melitensis BV}
Probab=17.59 E-value=30 Score=30.20 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=16.3
Q ss_pred HHhhchhhheeehhhhhcc
Q 046572 18 ALTSGALMMFKMKEIYTLT 36 (130)
Q Consensus 18 AlT~G~LMmFy~kei~vfg 36 (130)
+-|.|+|+.||...+.+-|
T Consensus 482 p~~lG~LialyEh~v~v~G 500 (553)
T 4em6_D 482 PYTLGRLIALYEHRVFVEA 500 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4578999999999988766
No 10
>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} SCOP: c.80.1.2 PDB: 3ifs_A*
Probab=17.31 E-value=31 Score=29.16 Aligned_cols=30 Identities=27% Similarity=0.189 Sum_probs=22.8
Q ss_pred HHhhchhhheeehhhhhcccchHHHHHhhCCCcccch
Q 046572 18 ALTSGALMMFKMKEIYTLTHGAETATKLLGSNPHDQL 54 (130)
Q Consensus 18 AlT~G~LMmFy~kei~vfgHG~etA~KL~GSTPhDqL 54 (130)
+-|.|+|+.||...+.+-| .|.|-.|-||-
T Consensus 388 p~~lG~Lia~yE~~~~v~G-------~l~gINpFDQp 417 (446)
T 3ff1_A 388 EETFGYVVYFFELACAMSG-------YQLGVNPFNQP 417 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHTSCTTCCG
T ss_pred HhHHHHHHHHHHHHHHHHH-------HhcCcCCCCCc
Confidence 4578999999988887765 56677777764
Done!