BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046574
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ICP|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICP|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With Peg400
pdb|1ICQ|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICQ|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato Complexed With 9r,13r-Opda
pdb|1ICS|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|1ICS|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 1 From
Tomato
pdb|3HGR|A Chain A, Crystal Structure Of Tomato Opr1 In Complex With Phb
pdb|3HGR|B Chain B, Crystal Structure Of Tomato Opr1 In Complex With Phb
Length = 376
Score = 164 bits (414), Expect = 2e-41, Method: Composition-based stats.
Identities = 72/95 (75%), Positives = 83/95 (87%)
Query: 1 MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
MKT EK EC SL+ MRKA+KGTF+VAGGYDREDGN+A+ E RADLV YGR F++NPDL
Sbjct: 280 MKTAWEKIECTESLVPMRKAYKGTFIVAGGYDREDGNRALIEDRADLVAYGRLFISNPDL 339
Query: 61 PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDT 95
P+RFE NAPLNKYNR+TFY SDP+VGYTDYPFL+T
Sbjct: 340 PKRFELNAPLNKYNRDTFYTSDPIVGYTDYPFLET 374
>pdb|1VJI|A Chain A, Gene Product Of At1g76680 From Arabidopsis Thaliana
pdb|2Q3R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g76680 From Arabidopsis Thaliana
Length = 372
Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 68/97 (70%), Positives = 86/97 (88%)
Query: 1 MKTVGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
MKT+GE CPH+L+ MRKAFKGTF+ AGG+ REDGN+A+++GR DLV YGR+FLANPDL
Sbjct: 276 MKTMGEVHACPHTLMPMRKAFKGTFISAGGFTREDGNEAVSKGRTDLVAYGRWFLANPDL 335
Query: 61 PRRFEFNAPLNKYNRETFYVSDPVVGYTDYPFLDTSS 97
P+RF+ +APLNKY+R TFY SDPVVGYTDYPFL++++
Sbjct: 336 PKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFLESTA 372
>pdb|2HS6|A Chain A, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HS6|B Chain B, Crystal Structure Of The E291k Mutant Of 12-
Oxophytodienoate Reductase 3 (Opr3) From Tomato
pdb|2HSA|B Chain B, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|2HSA|A Chain A, Crystal Structure Of 12-Oxophytodienoate Reductase 3
(Opr3) From Tomato
pdb|3HGS|A Chain A, Crystal Structure Of Tomato Opr3 In Complex With Phb
pdb|3HGS|B Chain B, Crystal Structure Of Tomato Opr3 In Complex With Phb
Length = 402
Score = 119 bits (299), Expect = 3e-28, Method: Composition-based stats.
Identities = 53/90 (58%), Positives = 68/90 (75%)
Query: 4 VGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63
+G + E + +R A++GTF+ +GGY RE G +A+A+G ADLV YGR F++NPDL R
Sbjct: 301 LGSEEEEARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMR 360
Query: 64 FEFNAPLNKYNRETFYVSDPVVGYTDYPFL 93
+ NAPLNKYNR+TFY DPVVGYTDYPFL
Sbjct: 361 IKLNAPLNKYNRKTFYTQDPVVGYTDYPFL 390
>pdb|3HGO|A Chain A, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
pdb|3HGO|B Chain B, Crystal Structure Of The F74yH244Y OPR3 DOUBLE MUTANT FROM
Tomato
Length = 402
Score = 119 bits (298), Expect = 4e-28, Method: Composition-based stats.
Identities = 53/90 (58%), Positives = 68/90 (75%)
Query: 4 VGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63
+G + E + +R A++GTF+ +GGY RE G +A+A+G ADLV YGR F++NPDL R
Sbjct: 301 LGSEEEEARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMR 360
Query: 64 FEFNAPLNKYNRETFYVSDPVVGYTDYPFL 93
+ NAPLNKYNR+TFY DPVVGYTDYPFL
Sbjct: 361 IKLNAPLNKYNRKTFYTQDPVVGYTDYPFL 390
>pdb|2HS8|A Chain A, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
pdb|2HS8|B Chain B, Crystal Structure Of The Y364f Mutant Of 12-
Oxophytodienoate Reductase 3 From Tomato
Length = 402
Score = 118 bits (295), Expect = 9e-28, Method: Composition-based stats.
Identities = 52/90 (57%), Positives = 68/90 (75%)
Query: 4 VGEKSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63
+G + E + +R A++GTF+ +GGY RE G +A+A+G ADLV YGR F++NPDL R
Sbjct: 301 LGSEEEEARLMRTLRNAYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMR 360
Query: 64 FEFNAPLNKYNRETFYVSDPVVGYTDYPFL 93
+ NAPLNK+NR+TFY DPVVGYTDYPFL
Sbjct: 361 IKLNAPLNKFNRKTFYTQDPVVGYTDYPFL 390
>pdb|1Q45|A Chain A, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|1Q45|B Chain B, 12-0xo-Phytodienoate Reductase Isoform 3
pdb|2G5W|A Chain A, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2G5W|B Chain B, X-Ray Crystal Structure Of Arabidopsis Thaliana
12-Oxophytodienoate Reductase Isoform 3 (Atopr3) In
Complex With 8-Iso Prostaglandin A1 And Its Cofactor,
Flavin Mononucleotide.
pdb|2Q3O|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
pdb|2Q3O|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
12-Oxo- Phytodienoate Reductase Isoform 3
Length = 391
Score = 110 bits (274), Expect = 3e-25, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 61/77 (79%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R A+ GTF+ +GG+++E G +A+ +G ADLV YGR F+ANPDL RF+ + LNKYNR+
Sbjct: 309 LRMAYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRK 368
Query: 77 TFYVSDPVVGYTDYPFL 93
TFY DPVVGYTDYPFL
Sbjct: 369 TFYTQDPVVGYTDYPFL 385
>pdb|3GKA|A Chain A, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
pdb|3GKA|B Chain B, Crystal Structure Of N-Ethylmaleimidine Reductase From
Burkholderia Pseudomallei
Length = 361
Score = 83.6 bits (205), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
++ AF G F+V + + A+ G+AD V +G+ F+ANPDLPRRF+ NAPLN+ N
Sbjct: 282 LKAAFGGPFIVNENFTLDSAQAALDAGQADAVAWGKLFIANPDLPRRFKLNAPLNEPNAA 341
Query: 77 TFYVSDPVVGYTDYPFLDTSS 97
TFY VGYTDYP L++++
Sbjct: 342 TFYAQGE-VGYTDYPALESAA 361
>pdb|4AB4|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AB4|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
Length = 362
Score = 78.2 bits (191), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 16 LMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNR 75
L+++AF G ++V +D+ N A+A G+AD V +G F+ANPDLP R +APLN+ +
Sbjct: 273 LIKEAFGGPYIVNERFDKASANAALASGKADAVAFGVPFIANPDLPARLAADAPLNEAHP 332
Query: 76 ETFYVSDPVVGYTDYPFLDTSS 97
ETFY P VGY DYP L ++
Sbjct: 333 ETFYGKGP-VGYIDYPRLKLAA 353
>pdb|3GX9|A Chain A, Structure Of Morphinone Reductase N189a Mutant In Complex
With Tetrahydronad
Length = 377
Score = 75.5 bits (184), Expect = 7e-15, Method: Composition-based stats.
Identities = 38/78 (48%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
MR+ FKG + G YD + + AD V +GR F+ANPDLP RF A LN+ +
Sbjct: 294 MRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPS 353
Query: 77 TFYVSDPVVGYTDYPFLD 94
TFY VGYTDYPFLD
Sbjct: 354 TFY-GGAEVGYTDYPFLD 370
>pdb|2R14|A Chain A, Structure Of Morphinone Reductase In Complex With
Tetrahydronad
Length = 377
Score = 75.5 bits (184), Expect = 7e-15, Method: Composition-based stats.
Identities = 38/78 (48%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
MR+ FKG + G YD + + AD V +GR F+ANPDLP RF A LN+ +
Sbjct: 294 MRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPS 353
Query: 77 TFYVSDPVVGYTDYPFLD 94
TFY VGYTDYPFLD
Sbjct: 354 TFY-GGAEVGYTDYPFLD 370
>pdb|1GWJ|A Chain A, Morphinone Reductase
Length = 377
Score = 75.5 bits (184), Expect = 7e-15, Method: Composition-based stats.
Identities = 38/78 (48%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
MR+ FKG + G YD + + AD V +GR F+ANPDLP RF A LN+ +
Sbjct: 294 MRQRFKGGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLGAALNEPDPS 353
Query: 77 TFYVSDPVVGYTDYPFLD 94
TFY VGYTDYPFLD
Sbjct: 354 TFY-GGAEVGYTDYPFLD 370
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 68.6 bits (166), Expect = 9e-13, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 7 KSECPHSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66
K++ P +RK FK ++ Y E A+ G AD + +GR F+ NPDLPRRF
Sbjct: 271 KTDQPKLSPEIRKVFKPPLVLNQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFFE 330
Query: 67 NAPLNKYNRETFYVSDPVVGYTDYPFL 93
APL K ET+Y P GYTDYP L
Sbjct: 331 KAPLTKDVIETWYTQTP-KGYTDYPLL 356
>pdb|2GOU|A Chain A, Structure Of Wild Type, Oxidized Sye1, An Oye Homologue
From S. Oneidensis
pdb|2GQ8|A Chain A, Structure Of Sye1, An Oye Homologue From S. Ondeidensis,
In Complex With P-Hydroxyacetophenone
pdb|2GQ9|A Chain A, Structure Of Sye1, An Oye Homologue From S. Oneidensis, In
Complex With P-Hydroxybenzaldehyde
pdb|2GQA|A Chain A, Structure Of Nadh-Reduced Sye1, An Oye Homologue From S.
Oneidensis
Length = 365
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+A++G + AG Y+ E +AI +G AD++ +GR F+ANPDLP R PL ++
Sbjct: 288 LREAYQGVLIYAGRYNAEKAEQAINDGLADMIGFGRPFIANPDLPERLRHGYPLAEHVPA 347
Query: 77 TFYVSDPVVGYTDYP 91
T + G TDYP
Sbjct: 348 TLFGGGE-KGLTDYP 361
>pdb|3ATY|A Chain A, Crystal Structure Of Tcoye
pdb|3ATY|B Chain B, Crystal Structure Of Tcoye
pdb|3ATZ|A Chain A, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|B Chain B, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|C Chain C, Crystal Structure Of Tcoye With Phba
pdb|3ATZ|D Chain D, Crystal Structure Of Tcoye With Phba
Length = 379
Score = 61.2 bits (147), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R ++ G + YD E+ ++ I EG+ D V +G F+ANPDL R + N PLN+ E
Sbjct: 302 VRGSYSGVKISNLRYDFEEADQQIREGKVDAVAFGAKFIANPDLVERAQQNWPLNEPRPE 361
Query: 77 TFYVSDPVVGYTDYP 91
T+Y + VGY DYP
Sbjct: 362 TYY-TRTAVGYNDYP 375
>pdb|3P67|A Chain A, T26s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 373
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77 TFYVSDPVVGYTDYPFL 93
+FY GYTDYP L
Sbjct: 350 SFY-GGGAEGYTDYPSL 365
>pdb|3P7Y|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure With Bound
(E)-1-(2'-Hydroxyphenyl)-2-Nitroethene
pdb|3P80|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing Bound
(E)-1-(3'-Hydroxyphenyl)-2-Nitroethene
pdb|3P81|A Chain A, Pentaerythritol Tetranitrate Reductase Co-Crystal
Structure Containing A Bound
(E)-1-(4'-Hydroxyphenyl)-2-Nitroethene Molecule
Length = 365
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77 TFYVSDPVVGYTDYPFL 93
+FY GYTDYP L
Sbjct: 350 SFY-GGGAEGYTDYPSL 365
>pdb|2ABB|A Chain A, Structure Of Petn Reductase Y186f In Complex With Cyanide
Length = 364
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 289 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 348
Query: 77 TFYVSDPVVGYTDYPFL 93
+FY GYTDYP L
Sbjct: 349 SFY-GGGAEGYTDYPSL 364
>pdb|3P62|A Chain A, Wild-Type Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal 8-Histidine Tag
Length = 373
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77 TFYVSDPVVGYTDYPFL 93
+FY GYTDYP L
Sbjct: 350 SFY-GGGAEGYTDYPSL 365
>pdb|1H50|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexes
pdb|1H60|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Progesterone
pdb|1H61|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With Prednisone
pdb|1H62|A Chain A, Structure Of Pentaerythritol Tetranitrate Reductase In
Complex With 1,4-Androstadien-3,17-Dione
pdb|1H63|A Chain A, Structure Of The Reduced Pentaerythritol Tetranitrate
Reductase
pdb|1GVO|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4 Dinitrophenol
pdb|1GVQ|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Cyclohexanone
pdb|1GVR|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With 2,4,6 Trinitrotoluene
pdb|1GVS|A Chain A, Stucture Of Pentaerythritol Tetranitrate Reductase And
Complexed With Picric Acid
pdb|1H51|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase And
Complexes
pdb|1VYR|A Chain A, Stucture Of Pentaerythritol Tetranirate Reductase
Complexed With Picric Acid
pdb|2ABA|A Chain A, Structure Of Reduced Petn Reductase In Complex With
Progesterone
pdb|3F03|K Chain K, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1-Nitrocyclohexene
pdb|3KFT|A Chain A, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
pdb|3KFT|B Chain B, Crystal Structure Of Pentaerythritol Tetranitrate
Reductase Complex With 1,4,5,6-Tetrahydro Nadh
Length = 364
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 289 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 348
Query: 77 TFYVSDPVVGYTDYPFL 93
+FY GYTDYP L
Sbjct: 349 SFY-GGGAEGYTDYPSL 364
>pdb|3P74|A Chain A, H181n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A C- Terminal His8-Tag
Length = 373
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77 TFYVSDPVVGYTDYPFL 93
+FY GYTDYP L
Sbjct: 350 SFY-GGGAEGYTDYPSL 365
>pdb|3P82|A Chain A, H184n Mutant Of Pentaerythritol Tetranitrate Reductase
Containing Bound Acetate Ion
Length = 365
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77 TFYVSDPVVGYTDYPFL 93
+FY GYTDYP L
Sbjct: 350 SFY-GGGAEGYTDYPSL 365
>pdb|1VYP|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102f
Mutant And Complexed With Picric Acid
Length = 364
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 289 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 348
Query: 77 TFYVSDPVVGYTDYPFL 93
+FY GYTDYP L
Sbjct: 349 SFY-GGGAEGYTDYPSL 364
>pdb|1VYS|X Chain X, Stucture Of Pentaerythritol Tetranitrate Reductase W102y
Mutant And Complexed With Picric Acid
Length = 364
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 289 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 348
Query: 77 TFYVSDPVVGYTDYPFL 93
+FY GYTDYP L
Sbjct: 349 SFY-GGGAEGYTDYPSL 364
>pdb|3P8I|A Chain A, Y351f Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77 TFYVSDPVVGYTDYPFL 93
+F+ GYTDYP L
Sbjct: 350 SFF-GGGAEGYTDYPSL 365
>pdb|3P84|A Chain A, Y351a Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77 TFYVSDPVVGYTDYPFL 93
+F GYTDYP L
Sbjct: 350 SF-AGGGAEGYTDYPSL 365
>pdb|3P8J|A Chain A, Y351s Mutant Of Pentaerythritol Tetranitrate Reductase
Containing A Bound Acetate Molecule
Length = 365
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 17 MRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76
+R+ F G + AG Y E I +G D V +GR ++ANPDL R + A LN E
Sbjct: 290 VRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKKAELNPQRPE 349
Query: 77 TFYVSDPVVGYTDYPFL 93
+F GYTDYP L
Sbjct: 350 SF-SGGGAEGYTDYPSL 365
>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
Length = 399
Score = 55.5 bits (132), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47 LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
L+ YGRFF++NPDL R E PLNKY+R+TFY GY DYP
Sbjct: 343 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 386
>pdb|1OYA|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYB|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|1OYC|A Chain A, Old Yellow Enzyme At 2 Angstroms Resolution: Overall
Structure, Ligand Binding And Comparison With Related
Flavoproteins
pdb|3TX9|A Chain A, Oye1 Complexed With 2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 400
Score = 55.5 bits (132), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47 LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
L+ YGRFF++NPDL R E PLNKY+R+TFY GY DYP
Sbjct: 344 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 387
>pdb|1BWK|A Chain A, Old Yellow Enzyme (Oye1) Mutant H191n
Length = 399
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47 LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
L+ YGRFF++NPDL R E PLNKY+R+TFY GY DYP
Sbjct: 343 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 386
>pdb|4GE8|A Chain A, Oye1-W116i Complexed With (S)-Carvone
Length = 400
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47 LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
L+ YGRFF++NPDL R E PLNKY+R+TFY GY DYP
Sbjct: 344 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 387
>pdb|3TXZ|A Chain A, Oye1-W116q Complexed With R-Carvone
Length = 400
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47 LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
L+ YGRFF++NPDL R E PLNKY+R+TFY GY DYP
Sbjct: 344 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 387
>pdb|3RND|A Chain A, W116i-Oye1 Complexed With
2-(Hydroxymethyl)-Cyclopent-2-Enone
Length = 399
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47 LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
L+ YGRFF++NPDL R E PLNKY+R+TFY GY DYP
Sbjct: 343 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFY-QMSAHGYIDYP 386
>pdb|4GBU|A Chain A, Oye1-W116a In Complex With Aromatic Product Of S-Carvone
Dismutation
Length = 400
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47 LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
L+ YGRFF++NPDL R E PLNKY+R+TFY GY DYP
Sbjct: 344 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYP 387
>pdb|4GWE|A Chain A, W116l-Oye1 Complexed With (R)-Carvone
pdb|4GXM|A Chain A, Oye1-W116l In Complex With Aromatic Product Of R-Carvone
Dismutation
Length = 400
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47 LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
L+ YGRFF++NPDL R E PLNKY+R+TFY GY DYP
Sbjct: 344 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYP 387
>pdb|1K02|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
pdb|1K03|A Chain A, Crystal Structure Of Old Yellow Enzyme Mutant Gln114asn
Complexed With Para-Hydroxy Benzaldehyde
Length = 399
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 47 LVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91
L+ YGRFF++NPDL R E PLNKY+R+TFY GY DYP
Sbjct: 343 LIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMS-AHGYIDYP 386
>pdb|3TJL|A Chain A, Crystal Structure Of A Novel Oye From The
Xylose-Fermenting Fungus P. Stipitis
pdb|3UPW|A Chain A, Pichia Stipitis Oye2.6 Complexed With Nicotinamide
Length = 407
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 16 LMRKAFKGTFLVAGGYDREDGN-KAIAEGRAD---LVVYGRFFLANPDLPRRFEFNAPLN 71
+ K +KG L AG Y + K + E AD LV + R+F +NP+L + L
Sbjct: 307 FVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLV 366
Query: 72 KYNRETFYVSDPVVGYTDY 90
Y+R TFY SD GY +
Sbjct: 367 PYDRNTFY-SDNNYGYNTF 384
>pdb|4DF2|A Chain A, P. Stipitis Oye2.6 Complexed With P-Chlorophenol
Length = 407
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 16 LMRKAFKGTFLVAGGYDREDGN-KAIAEGRAD---LVVYGRFFLANPDLPRRFEFNAPLN 71
+ K +KG L AG Y + K + E AD LV + R+F +NP+L + L
Sbjct: 307 FVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDGIDLV 366
Query: 72 KYNRETFYVSDPVVGYTDY 90
Y+R TFY SD GY +
Sbjct: 367 PYDRNTFY-SDNNYGYNTF 384
>pdb|1VC4|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
pdb|1VC4|B Chain B, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Trpc) From Thermus Thermophilus At 1.8 A Resolution
Length = 254
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 15 LLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60
L ++ F G + GY R++ KA+ EG D V+ G + PDL
Sbjct: 201 LARKRGFGGVLVAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDL 245
>pdb|3GR7|A Chain A, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR7|B Chain B, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR8|A Chain A, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
pdb|3GR8|B Chain B, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
Length = 340
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 26 LVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLP 61
L+ G+ E+ + GRADLV GR L NP P
Sbjct: 285 LITSGWQAEE---ILQNGRADLVFLGRELLRNPYWP 317
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 36 GNKAIAEGRADLVVYGRFFLANPDLPRRF 64
GNK +A + D RF LAN DL +RF
Sbjct: 340 GNKKLAYSKQD-----RFLLANLDLTQRF 363
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 16 LMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65
L+++ K L G Y D E + + +G AD++ R +A+P LP++ E
Sbjct: 285 LVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE 335
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 16 LMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65
L+++ K L G Y D E + + +G AD++ R +A+P LP++ E
Sbjct: 285 LVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,429,535
Number of Sequences: 62578
Number of extensions: 136125
Number of successful extensions: 259
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 43
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)