Query 046574
Match_columns 104
No_of_seqs 110 out of 1155
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 13:31:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02411 12-oxophytodienoate r 99.8 2.3E-20 5E-25 147.7 9.6 82 13-94 304-385 (391)
2 PRK10605 N-ethylmaleimide redu 99.8 4.3E-18 9.2E-23 133.6 9.3 81 12-93 282-362 (362)
3 COG1902 NemA NADH:flavin oxido 99.6 1.6E-15 3.4E-20 119.5 8.0 82 12-95 278-360 (363)
4 cd02933 OYE_like_FMN Old yello 99.5 1.7E-14 3.7E-19 112.4 8.1 64 12-75 275-338 (338)
5 KOG0134 NADH:flavin oxidoreduc 99.5 1.2E-14 2.7E-19 115.3 6.6 86 12-97 307-394 (400)
6 PF00724 Oxidored_FMN: NADH:fl 99.5 1.6E-14 3.5E-19 112.3 6.7 59 12-70 281-340 (341)
7 cd02929 TMADH_HD_FMN Trimethyl 99.4 3.1E-13 6.8E-18 106.3 7.1 58 12-69 279-337 (370)
8 cd02931 ER_like_FMN Enoate red 99.4 5.7E-13 1.2E-17 105.3 7.3 58 12-69 295-353 (382)
9 cd04747 OYE_like_5_FMN Old yel 99.4 5.8E-13 1.3E-17 104.9 6.7 65 12-76 270-355 (361)
10 cd04734 OYE_like_3_FMN Old yel 99.4 8.6E-13 1.9E-17 102.9 7.2 58 12-69 275-333 (343)
11 cd04733 OYE_like_2_FMN Old yel 99.4 8.6E-13 1.9E-17 102.3 7.0 56 12-67 282-338 (338)
12 PRK13523 NADPH dehydrogenase N 99.4 9.5E-13 2.1E-17 102.7 5.9 59 12-70 265-324 (337)
13 cd02930 DCR_FMN 2,4-dienoyl-Co 99.3 4.4E-12 9.5E-17 99.0 6.1 57 13-69 267-324 (353)
14 cd02803 OYE_like_FMN_family Ol 99.3 8.8E-12 1.9E-16 95.4 7.1 56 12-67 271-327 (327)
15 cd02932 OYE_YqiM_FMN Old yello 99.2 2.1E-11 4.6E-16 94.4 6.6 55 12-66 280-335 (336)
16 cd04735 OYE_like_4_FMN Old yel 99.2 1.7E-11 3.6E-16 95.9 5.6 58 12-70 272-332 (353)
17 PRK08255 salicylyl-CoA 5-hydro 99.1 1.7E-10 3.7E-15 97.8 7.9 60 12-71 677-737 (765)
18 cd02801 DUS_like_FMN Dihydrour 99.1 4.6E-10 1E-14 81.7 6.4 56 12-67 173-229 (231)
19 PRK10550 tRNA-dihydrouridine s 99.0 1.1E-09 2.3E-14 84.8 6.9 57 12-68 184-241 (312)
20 PRK07259 dihydroorotate dehydr 98.9 2.9E-09 6.2E-14 81.2 6.0 56 12-68 224-280 (301)
21 TIGR01037 pyrD_sub1_fam dihydr 98.9 3.7E-09 8E-14 80.5 5.9 55 13-68 225-280 (300)
22 TIGR00737 nifR3_yhdG putative 98.9 6.6E-09 1.4E-13 80.0 6.7 55 12-66 182-237 (319)
23 cd04740 DHOD_1B_like Dihydroor 98.9 6E-09 1.3E-13 79.1 6.3 57 12-69 221-278 (296)
24 cd02810 DHOD_DHPD_FMN Dihydroo 98.7 2E-08 4.4E-13 75.8 5.9 54 13-67 232-289 (289)
25 PRK10415 tRNA-dihydrouridine s 98.7 5.9E-08 1.3E-12 75.3 7.6 55 12-66 184-239 (321)
26 PRK11815 tRNA-dihydrouridine s 98.6 2.2E-07 4.8E-12 72.4 6.9 52 13-66 195-248 (333)
27 PRK05286 dihydroorotate dehydr 98.4 2.6E-07 5.7E-12 72.2 4.4 55 13-68 278-336 (344)
28 cd04738 DHOD_2_like Dihydrooro 98.4 5.1E-07 1.1E-11 70.0 5.8 55 12-67 268-326 (327)
29 cd04731 HisF The cyclase subun 98.3 1.6E-06 3.4E-11 64.1 6.4 55 12-67 61-116 (243)
30 TIGR00742 yjbN tRNA dihydrouri 98.3 3.2E-06 6.9E-11 65.8 6.8 52 13-66 185-238 (318)
31 PRK07565 dihydroorotate dehydr 98.2 2.3E-06 5.1E-11 66.4 5.9 55 14-69 231-287 (334)
32 cd04732 HisA HisA. Phosphorib 98.2 3.6E-06 7.9E-11 61.5 6.5 56 12-68 63-119 (234)
33 PRK02083 imidazole glycerol ph 98.1 7.8E-06 1.7E-10 61.0 6.7 56 12-68 64-120 (253)
34 TIGR00735 hisF imidazoleglycer 98.1 9.5E-06 2.1E-10 60.8 6.8 54 13-67 65-119 (254)
35 COG0042 tRNA-dihydrouridine sy 98.1 7.6E-06 1.6E-10 63.8 6.4 53 12-64 187-241 (323)
36 TIGR01036 pyrD_sub2 dihydrooro 98.1 4.6E-06 1E-10 65.2 5.1 54 13-67 277-334 (335)
37 cd02911 arch_FMN Archeal FMN-b 98.1 6.7E-06 1.5E-10 61.3 5.7 48 15-65 183-232 (233)
38 cd04739 DHOD_like Dihydroorota 98.1 7.3E-06 1.6E-10 63.7 5.8 54 14-68 229-284 (325)
39 PF01207 Dus: Dihydrouridine s 98.0 3.8E-06 8.2E-11 64.9 2.9 58 12-69 173-234 (309)
40 cd04741 DHOD_1A_like Dihydroor 98.0 1.6E-05 3.5E-10 61.0 6.1 53 15-68 234-290 (294)
41 TIGR02151 IPP_isom_2 isopenten 98.0 1.2E-05 2.6E-10 62.7 5.4 51 17-68 248-305 (333)
42 cd02940 DHPD_FMN Dihydropyrimi 98.0 1.5E-05 3.3E-10 61.0 5.2 55 12-67 240-298 (299)
43 TIGR00736 nifR3_rel_arch TIM-b 97.9 2.1E-05 4.6E-10 58.9 5.5 45 12-57 180-226 (231)
44 PRK01130 N-acetylmannosamine-6 97.8 5.7E-05 1.2E-09 55.2 6.2 52 12-65 163-215 (221)
45 PRK00748 1-(5-phosphoribosyl)- 97.8 7.5E-05 1.6E-09 54.6 6.3 55 12-67 64-119 (233)
46 cd02812 PcrB_like PcrB_like pr 97.7 8.7E-05 1.9E-09 55.3 6.0 54 11-65 163-218 (219)
47 TIGR03572 WbuZ glycosyl amidat 97.7 0.00011 2.3E-09 54.0 6.5 54 13-67 65-119 (232)
48 cd00564 TMP_TenI Thiamine mono 97.7 0.00016 3.5E-09 50.5 6.9 53 12-65 140-192 (196)
49 PRK13585 1-(5-phosphoribosyl)- 97.7 0.00014 3E-09 53.6 6.8 54 12-66 183-237 (241)
50 cd04729 NanE N-acetylmannosami 97.7 0.0001 2.3E-09 53.8 5.6 48 12-60 167-215 (219)
51 PRK08318 dihydropyrimidine deh 97.7 5.3E-05 1.2E-09 60.4 4.3 54 14-68 242-300 (420)
52 PRK14024 phosphoribosyl isomer 97.6 0.00014 3.1E-09 54.1 6.0 55 12-67 65-120 (241)
53 TIGR01768 GGGP-family geranylg 97.6 0.00022 4.8E-09 53.3 7.0 54 11-65 167-222 (223)
54 COG0107 HisF Imidazoleglycerol 97.6 0.00014 3E-09 55.0 5.8 54 12-66 64-118 (256)
55 PRK07695 transcriptional regul 97.6 0.00025 5.5E-09 51.1 7.1 53 12-65 139-191 (201)
56 PRK13585 1-(5-phosphoribosyl)- 97.6 0.00027 5.8E-09 52.0 7.0 56 12-68 66-122 (241)
57 PF01180 DHO_dh: Dihydroorotat 97.6 0.00019 4.1E-09 54.6 6.2 55 13-68 233-291 (295)
58 KOG2335 tRNA-dihydrouridine sy 97.6 0.00012 2.5E-09 58.1 5.1 49 13-61 193-243 (358)
59 cd02811 IDI-2_FMN Isopentenyl- 97.5 0.00021 4.6E-09 55.6 6.0 44 13-57 245-290 (326)
60 PRK04128 1-(5-phosphoribosyl)- 97.5 0.00023 4.9E-09 53.0 5.7 52 13-66 64-116 (228)
61 PRK04169 geranylgeranylglycery 97.5 0.00034 7.3E-09 52.5 6.6 54 11-65 172-228 (232)
62 PRK05437 isopentenyl pyrophosp 97.5 0.00026 5.7E-09 55.7 5.8 44 13-57 251-296 (352)
63 cd04731 HisF The cyclase subun 97.5 0.00031 6.8E-09 51.9 5.8 46 12-57 183-229 (243)
64 PLN02826 dihydroorotate dehydr 97.5 0.00029 6.3E-09 56.7 6.1 55 13-68 330-388 (409)
65 cd00429 RPE Ribulose-5-phospha 97.5 0.00049 1.1E-08 49.0 6.6 52 13-65 152-208 (211)
66 PRK00043 thiE thiamine-phospha 97.5 0.00062 1.4E-08 48.7 7.0 53 12-65 149-202 (212)
67 cd04732 HisA HisA. Phosphorib 97.4 0.00041 9E-09 50.6 6.1 47 12-59 180-227 (234)
68 PF00977 His_biosynth: Histidi 97.4 0.00057 1.2E-08 50.6 6.9 53 13-66 64-117 (229)
69 PRK00748 1-(5-phosphoribosyl)- 97.4 0.0004 8.7E-09 50.7 5.9 46 12-57 180-226 (233)
70 TIGR00735 hisF imidazoleglycer 97.4 0.00034 7.3E-09 52.4 5.6 45 12-56 189-234 (254)
71 PRK02506 dihydroorotate dehydr 97.4 0.00025 5.3E-09 54.9 4.9 53 15-68 232-288 (310)
72 cd02809 alpha_hydroxyacid_oxid 97.4 0.00043 9.2E-09 53.1 5.9 45 13-58 216-263 (299)
73 PRK13587 1-(5-phosphoribosyl)- 97.4 0.00048 1.1E-08 51.3 6.0 55 12-67 66-121 (234)
74 cd04726 KGPDC_HPS 3-Keto-L-gul 97.4 0.00069 1.5E-08 48.3 6.3 52 13-65 149-200 (202)
75 TIGR01163 rpe ribulose-phospha 97.4 0.0008 1.7E-08 48.1 6.6 51 14-65 152-207 (210)
76 COG0167 PyrD Dihydroorotate de 97.3 0.00027 5.8E-09 55.2 4.2 56 12-68 229-288 (310)
77 cd04730 NPD_like 2-Nitropropan 97.3 0.00053 1.2E-08 50.0 5.4 49 12-61 146-195 (236)
78 TIGR01919 hisA-trpF 1-(5-phosp 97.3 0.0008 1.7E-08 50.5 6.0 54 13-67 65-119 (243)
79 TIGR03572 WbuZ glycosyl amidat 97.2 0.00075 1.6E-08 49.5 5.5 43 12-54 187-230 (232)
80 TIGR03151 enACPred_II putative 97.2 0.00086 1.9E-08 51.9 5.9 48 12-60 151-199 (307)
81 TIGR00007 phosphoribosylformim 97.2 0.0011 2.4E-08 48.4 6.0 45 12-57 179-224 (230)
82 TIGR00007 phosphoribosylformim 97.2 0.0015 3.3E-08 47.7 6.4 56 12-68 62-118 (230)
83 PRK05581 ribulose-phosphate 3- 97.1 0.0018 3.9E-08 46.7 6.6 40 25-65 173-212 (220)
84 PRK04180 pyridoxal biosynthesi 97.1 0.0019 4.2E-08 50.1 7.0 50 12-62 193-245 (293)
85 PRK01033 imidazole glycerol ph 97.1 0.0016 3.5E-08 49.0 6.3 54 12-66 64-118 (258)
86 cd00331 IGPS Indole-3-glycerol 97.1 0.0024 5.2E-08 46.4 7.0 53 12-65 160-215 (217)
87 COG0352 ThiE Thiamine monophos 97.1 0.0033 7E-08 46.7 7.7 53 12-65 148-200 (211)
88 cd04727 pdxS PdxS is a subunit 97.1 0.0022 4.8E-08 49.5 7.0 47 12-59 184-233 (283)
89 PRK01033 imidazole glycerol ph 97.0 0.00078 1.7E-08 50.7 4.0 55 12-66 186-241 (258)
90 PF03060 NMO: Nitronate monoox 97.0 0.0018 3.9E-08 50.4 6.1 47 12-59 180-227 (330)
91 TIGR00693 thiE thiamine-phosph 97.0 0.0033 7.3E-08 44.7 7.0 52 12-64 141-193 (196)
92 TIGR00343 pyridoxal 5'-phospha 97.0 0.0028 6E-08 49.1 6.7 47 12-59 187-236 (287)
93 PRK06512 thiamine-phosphate py 97.0 0.0041 8.9E-08 46.1 7.4 52 13-65 155-206 (221)
94 PRK14024 phosphoribosyl isomer 96.9 0.0033 7.1E-08 46.9 6.5 53 12-64 180-235 (241)
95 TIGR02129 hisA_euk phosphoribo 96.9 0.0031 6.8E-08 48.0 6.5 55 12-67 66-124 (253)
96 PLN02334 ribulose-phosphate 3- 96.9 0.0041 9E-08 45.8 7.0 52 13-65 164-216 (229)
97 PRK14114 1-(5-phosphoribosyl)- 96.9 0.0029 6.3E-08 47.5 5.9 52 13-66 65-117 (241)
98 TIGR02708 L_lactate_ox L-lacta 96.9 0.0027 5.9E-08 50.6 5.7 44 12-56 271-317 (367)
99 PRK05458 guanosine 5'-monophos 96.8 0.0029 6.2E-08 49.7 5.6 48 13-61 192-240 (326)
100 PRK13586 1-(5-phosphoribosyl)- 96.8 0.0036 7.9E-08 46.7 5.8 53 14-67 65-118 (232)
101 PF01884 PcrB: PcrB family; I 96.8 0.0026 5.6E-08 47.8 5.0 44 16-60 175-220 (230)
102 PRK07028 bifunctional hexulose 96.8 0.0048 1E-07 49.4 6.9 50 12-62 152-201 (430)
103 cd04728 ThiG Thiazole synthase 96.8 0.0036 7.8E-08 47.6 5.8 50 11-61 164-216 (248)
104 PRK07455 keto-hydroxyglutarate 96.8 0.0044 9.5E-08 44.7 5.8 45 11-56 140-185 (187)
105 cd04737 LOX_like_FMN L-Lactate 96.8 0.0041 8.8E-08 49.3 6.0 46 12-58 264-312 (351)
106 PRK04302 triosephosphate isome 96.8 0.0054 1.2E-07 45.1 6.3 53 12-65 162-216 (223)
107 TIGR00734 hisAF_rel hisA/hisF 96.7 0.0043 9.4E-08 45.9 5.7 43 12-55 174-217 (221)
108 PLN02495 oxidoreductase, actin 96.7 0.0021 4.6E-08 51.4 4.3 46 23-69 271-318 (385)
109 TIGR01769 GGGP geranylgeranylg 96.7 0.0037 8.1E-08 46.1 5.2 40 11-51 165-205 (205)
110 PRK09140 2-dehydro-3-deoxy-6-p 96.6 0.011 2.4E-07 43.4 7.2 46 11-57 138-185 (206)
111 cd04736 MDH_FMN Mandelate dehy 96.6 0.0056 1.2E-07 48.7 6.0 43 12-55 279-322 (361)
112 cd04722 TIM_phosphate_binding 96.6 0.0046 1E-07 42.4 4.9 37 15-52 163-200 (200)
113 PRK00208 thiG thiazole synthas 96.6 0.011 2.3E-07 45.1 6.9 45 11-56 164-209 (250)
114 PRK02615 thiamine-phosphate py 96.6 0.0099 2.1E-07 47.1 7.0 52 12-64 284-335 (347)
115 TIGR03128 RuMP_HxlA 3-hexulose 96.5 0.0099 2.1E-07 42.6 6.3 51 13-64 148-199 (206)
116 PRK06552 keto-hydroxyglutarate 96.5 0.013 2.7E-07 43.4 6.8 45 11-56 143-188 (213)
117 COG2070 Dioxygenases related t 96.5 0.0038 8.2E-08 49.1 4.1 47 12-59 173-221 (336)
118 TIGR00262 trpA tryptophan synt 96.5 0.011 2.5E-07 44.6 6.6 45 11-56 187-232 (256)
119 PRK03512 thiamine-phosphate py 96.5 0.015 3.2E-07 42.8 7.0 51 14-65 149-200 (211)
120 PRK08883 ribulose-phosphate 3- 96.5 0.013 2.7E-07 43.5 6.6 52 13-65 153-209 (220)
121 PLN02535 glycolate oxidase 96.4 0.0079 1.7E-07 47.9 5.7 46 13-59 267-315 (364)
122 COG1304 idi Isopentenyl diphos 96.4 0.0053 1.1E-07 48.8 4.4 44 12-56 261-307 (360)
123 cd02808 GltS_FMN Glutamate syn 96.4 0.009 2E-07 47.7 5.7 34 22-56 285-319 (392)
124 COG0106 HisA Phosphoribosylfor 96.3 0.009 1.9E-07 45.3 5.2 56 13-69 66-122 (241)
125 PTZ00170 D-ribulose-5-phosphat 96.3 0.018 4E-07 42.7 6.8 50 14-64 164-214 (228)
126 PF01070 FMN_dh: FMN-dependent 96.3 0.011 2.4E-07 46.7 5.9 44 12-56 268-314 (356)
127 cd00452 KDPG_aldolase KDPG and 96.3 0.013 2.9E-07 41.9 5.8 44 11-55 131-175 (190)
128 PF04131 NanE: Putative N-acet 96.3 0.014 3E-07 42.9 5.8 49 13-64 136-185 (192)
129 cd04723 HisA_HisF Phosphoribos 96.3 0.012 2.6E-07 43.6 5.5 54 13-68 69-123 (233)
130 cd03332 LMO_FMN L-Lactate 2-mo 96.2 0.012 2.5E-07 47.3 5.7 43 12-55 296-341 (383)
131 PLN02446 (5-phosphoribosyl)-5- 96.2 0.016 3.4E-07 44.4 6.2 53 13-67 75-131 (262)
132 PRK00278 trpC indole-3-glycero 96.2 0.022 4.7E-07 43.1 6.9 52 13-65 200-254 (260)
133 cd00381 IMPDH IMPDH: The catal 96.2 0.01 2.2E-07 46.3 5.1 40 21-61 196-236 (325)
134 PRK02083 imidazole glycerol ph 96.2 0.014 3.1E-07 43.4 5.7 46 12-57 187-233 (253)
135 cd02922 FCB2_FMN Flavocytochro 96.2 0.018 3.9E-07 45.4 6.4 36 23-59 272-308 (344)
136 cd04742 NPD_FabD 2-Nitropropan 96.2 0.014 3E-07 47.4 5.8 37 22-59 219-256 (418)
137 cd04723 HisA_HisF Phosphoribos 96.1 0.017 3.7E-07 42.9 5.7 45 12-57 179-224 (233)
138 TIGR02814 pfaD_fam PfaD family 96.1 0.015 3.3E-07 47.5 5.8 37 22-59 224-261 (444)
139 PLN02979 glycolate oxidase 96.0 0.019 4.1E-07 45.9 5.8 43 13-56 267-312 (366)
140 TIGR01306 GMP_reduct_2 guanosi 96.0 0.018 3.9E-07 45.2 5.5 48 13-61 189-237 (321)
141 PRK13587 1-(5-phosphoribosyl)- 95.9 0.023 4.9E-07 42.4 5.7 43 13-56 183-226 (234)
142 PF00977 His_biosynth: Histidi 95.9 0.021 4.7E-07 42.2 5.6 43 12-55 181-224 (229)
143 PRK11197 lldD L-lactate dehydr 95.9 0.019 4E-07 46.1 5.4 43 13-56 289-334 (381)
144 PLN02493 probable peroxisomal 95.9 0.022 4.8E-07 45.4 5.8 42 13-55 268-312 (367)
145 cd00958 DhnA Class I fructose- 95.8 0.044 9.6E-07 40.1 6.6 53 12-65 169-228 (235)
146 TIGR01949 AroFGH_arch predicte 95.8 0.043 9.4E-07 41.1 6.7 52 12-64 182-240 (258)
147 PLN02617 imidazole glycerol ph 95.7 0.03 6.6E-07 46.7 6.1 53 13-66 305-381 (538)
148 PLN02898 HMP-P kinase/thiamin- 95.7 0.041 8.8E-07 45.0 6.7 53 12-65 434-489 (502)
149 TIGR01304 IMP_DH_rel_2 IMP deh 95.7 0.024 5.2E-07 45.3 5.2 36 23-59 256-292 (369)
150 PLN02591 tryptophan synthase 95.6 0.044 9.6E-07 41.5 6.2 45 11-56 178-223 (250)
151 CHL00200 trpA tryptophan synth 95.6 0.032 7E-07 42.5 5.4 44 11-55 191-235 (263)
152 TIGR00734 hisAF_rel hisA/hisF 95.5 0.033 7.3E-07 41.1 5.1 42 23-65 78-122 (221)
153 COG1646 Predicted phosphate-bi 95.5 0.038 8.3E-07 41.8 5.3 55 11-66 179-235 (240)
154 cd00405 PRAI Phosphoribosylant 95.4 0.025 5.4E-07 40.8 4.1 45 16-60 145-190 (203)
155 PRK06843 inosine 5-monophospha 95.4 0.022 4.8E-07 46.0 4.2 44 19-63 253-297 (404)
156 PRK09517 multifunctional thiam 95.2 0.074 1.6E-06 45.8 6.9 52 12-64 153-207 (755)
157 PRK13307 bifunctional formalde 95.2 0.081 1.8E-06 42.6 6.7 52 13-65 320-372 (391)
158 CHL00162 thiG thiamin biosynth 95.1 0.059 1.3E-06 41.4 5.5 50 12-62 179-229 (267)
159 PRK12290 thiE thiamine-phospha 95.1 0.12 2.6E-06 42.2 7.4 43 22-65 364-406 (437)
160 PLN02274 inosine-5'-monophosph 95.1 0.052 1.1E-06 44.9 5.4 56 14-70 343-401 (505)
161 PRK13111 trpA tryptophan synth 94.9 0.069 1.5E-06 40.6 5.4 43 11-55 189-232 (258)
162 TIGR01182 eda Entner-Doudoroff 94.9 0.065 1.4E-06 39.5 5.1 45 11-56 136-181 (204)
163 PF02581 TMP-TENI: Thiamine mo 94.9 0.047 1E-06 38.7 4.1 41 12-53 139-179 (180)
164 PRK14114 1-(5-phosphoribosyl)- 94.8 0.079 1.7E-06 39.8 5.5 46 12-57 178-229 (241)
165 PTZ00314 inosine-5'-monophosph 94.8 0.05 1.1E-06 44.8 4.7 46 17-63 339-385 (495)
166 TIGR01919 hisA-trpF 1-(5-phosp 94.8 0.073 1.6E-06 39.9 5.2 46 12-57 183-231 (243)
167 PRK08999 hypothetical protein; 94.6 0.055 1.2E-06 41.2 4.3 42 12-54 270-311 (312)
168 cd01568 QPRTase_NadC Quinolina 94.6 0.11 2.4E-06 39.5 5.9 36 22-58 227-262 (269)
169 PRK05718 keto-hydroxyglutarate 94.6 0.094 2E-06 38.8 5.2 49 11-61 143-192 (212)
170 PRK13125 trpA tryptophan synth 94.6 0.12 2.7E-06 38.4 5.9 44 12-56 174-219 (244)
171 COG0107 HisF Imidazoleglycerol 94.4 0.054 1.2E-06 41.2 3.6 43 12-54 189-232 (256)
172 PRK05742 nicotinate-nucleotide 94.3 0.13 2.7E-06 39.6 5.6 44 13-57 222-267 (277)
173 PRK08649 inosine 5-monophospha 94.3 0.05 1.1E-06 43.3 3.5 41 22-63 256-297 (368)
174 PLN02446 (5-phosphoribosyl)-5- 94.2 0.12 2.5E-06 39.7 5.2 43 12-54 197-241 (262)
175 TIGR01305 GMP_reduct_1 guanosi 94.2 0.11 2.3E-06 41.3 5.1 39 12-51 139-178 (343)
176 TIGR01302 IMP_dehydrog inosine 94.2 0.1 2.2E-06 42.4 5.0 49 21-70 326-377 (450)
177 PF00218 IGPS: Indole-3-glycer 94.1 0.12 2.7E-06 39.3 5.0 52 14-66 199-253 (254)
178 PRK06806 fructose-bisphosphate 93.9 0.26 5.6E-06 37.9 6.7 46 12-58 190-237 (281)
179 PRK08005 epimerase; Validated 93.9 0.32 7E-06 36.0 6.9 48 17-65 157-205 (210)
180 TIGR02129 hisA_euk phosphoribo 93.8 0.14 2.9E-06 39.1 4.9 43 12-55 191-236 (253)
181 PRK07226 fructose-bisphosphate 93.8 0.28 6.1E-06 37.0 6.6 48 15-63 189-243 (267)
182 TIGR01740 pyrF orotidine 5'-ph 93.8 0.13 2.9E-06 37.5 4.7 54 11-65 146-210 (213)
183 PF05690 ThiG: Thiazole biosyn 93.7 0.3 6.5E-06 37.2 6.5 47 12-59 165-212 (247)
184 PRK13813 orotidine 5'-phosphat 93.7 0.11 2.5E-06 37.5 4.1 50 14-64 153-205 (215)
185 cd01572 QPRTase Quinolinate ph 93.6 0.16 3.5E-06 38.7 5.0 42 13-55 215-258 (268)
186 PRK13306 ulaD 3-keto-L-gulonat 93.5 0.23 5E-06 36.6 5.6 50 12-62 151-202 (216)
187 PRK07807 inosine 5-monophospha 93.5 0.16 3.5E-06 41.8 5.1 44 20-64 328-372 (479)
188 TIGR01303 IMP_DH_rel_1 IMP deh 93.5 0.16 3.5E-06 41.7 5.1 42 21-63 327-369 (475)
189 PRK11840 bifunctional sulfur c 93.5 0.24 5.1E-06 39.2 5.8 51 11-62 238-289 (326)
190 PF00478 IMPDH: IMP dehydrogen 93.4 0.14 3.1E-06 40.7 4.5 46 17-63 206-252 (352)
191 PRK00507 deoxyribose-phosphate 93.4 0.22 4.9E-06 37.0 5.3 42 12-54 167-211 (221)
192 COG0269 SgbH 3-hexulose-6-phos 93.4 0.33 7.1E-06 36.4 6.1 50 13-63 153-204 (217)
193 PRK08072 nicotinate-nucleotide 93.3 0.26 5.6E-06 37.9 5.8 43 12-55 220-264 (277)
194 PLN02617 imidazole glycerol ph 93.3 0.22 4.7E-06 41.7 5.7 45 12-56 472-517 (538)
195 PRK06015 keto-hydroxyglutarate 93.3 0.26 5.6E-06 36.3 5.5 49 10-60 131-180 (201)
196 COG3010 NanE Putative N-acetyl 93.3 0.27 5.8E-06 36.9 5.5 42 21-64 179-221 (229)
197 cd04724 Tryptophan_synthase_al 93.2 0.24 5.1E-06 37.0 5.2 42 12-55 177-219 (242)
198 PRK04128 1-(5-phosphoribosyl)- 93.2 0.22 4.7E-06 37.0 5.0 40 17-57 176-217 (228)
199 COG0106 HisA Phosphoribosylfor 93.2 0.28 6E-06 37.3 5.6 45 12-57 181-227 (241)
200 COG0036 Rpe Pentose-5-phosphat 93.1 0.25 5.4E-06 37.0 5.2 51 15-66 158-212 (220)
201 TIGR00078 nadC nicotinate-nucl 93.1 0.32 6.9E-06 37.1 5.8 41 14-55 212-254 (265)
202 PF01645 Glu_synthase: Conserv 93.0 0.19 4.1E-06 40.3 4.6 33 23-56 275-308 (368)
203 cd01573 modD_like ModD; Quinol 92.9 0.27 5.8E-06 37.6 5.2 32 22-54 230-261 (272)
204 PRK05567 inosine 5'-monophosph 92.8 0.18 3.8E-06 41.3 4.4 40 21-61 330-370 (486)
205 cd00311 TIM Triosephosphate is 92.8 0.24 5.2E-06 37.3 4.9 54 9-63 177-239 (242)
206 PF01081 Aldolase: KDPG and KH 92.8 0.12 2.5E-06 38.0 2.9 52 4-56 129-181 (196)
207 PRK08745 ribulose-phosphate 3- 92.7 0.61 1.3E-05 34.8 6.8 41 24-65 173-213 (223)
208 PRK08091 ribulose-phosphate 3- 92.4 0.66 1.4E-05 34.8 6.7 41 24-65 181-221 (228)
209 PRK00230 orotidine 5'-phosphat 92.3 0.24 5.3E-06 36.7 4.3 52 13-65 158-221 (230)
210 PRK08649 inosine 5-monophospha 92.3 0.27 5.8E-06 39.2 4.7 38 14-53 179-217 (368)
211 PRK14567 triosephosphate isome 92.2 0.33 7.3E-06 37.0 4.9 57 8-65 179-244 (253)
212 PF04309 G3P_antiterm: Glycero 92.1 0.052 1.1E-06 39.3 0.4 41 12-53 130-171 (175)
213 TIGR01304 IMP_DH_rel_2 IMP deh 92.0 0.42 9.1E-06 38.2 5.5 41 12-54 178-219 (369)
214 PRK13957 indole-3-glycerol-pho 91.8 0.87 1.9E-05 34.6 6.8 51 13-65 191-244 (247)
215 TIGR01306 GMP_reduct_2 guanosi 91.8 0.42 9.1E-06 37.6 5.2 39 12-51 126-165 (321)
216 PRK13586 1-(5-phosphoribosyl)- 91.8 0.48 1.1E-05 35.3 5.3 41 13-55 181-222 (232)
217 PRK07315 fructose-bisphosphate 91.5 0.88 1.9E-05 35.2 6.6 52 12-66 191-245 (293)
218 PF00290 Trp_syntA: Tryptophan 91.3 0.69 1.5E-05 35.3 5.8 42 12-55 188-230 (259)
219 cd02068 radical_SAM_B12_BD B12 91.2 0.64 1.4E-05 30.8 5.0 61 12-72 57-118 (127)
220 PRK05848 nicotinate-nucleotide 90.9 0.45 9.8E-06 36.5 4.5 31 24-55 231-261 (273)
221 cd04743 NPD_PKS 2-Nitropropane 90.6 0.62 1.4E-05 36.6 5.1 40 22-61 165-212 (320)
222 PRK14057 epimerase; Provisiona 90.6 1.5 3.3E-05 33.4 7.1 42 24-66 195-236 (254)
223 PTZ00333 triosephosphate isome 90.6 0.72 1.6E-05 35.1 5.3 55 10-65 185-249 (255)
224 PRK07107 inosine 5-monophospha 90.6 0.37 8.1E-06 39.9 4.0 40 23-63 353-393 (502)
225 cd00331 IGPS Indole-3-glycerol 90.5 0.67 1.5E-05 33.5 5.0 45 11-56 61-106 (217)
226 PRK07807 inosine 5-monophospha 90.5 0.58 1.3E-05 38.6 5.1 37 12-49 257-294 (479)
227 PRK05096 guanosine 5'-monophos 90.5 0.44 9.6E-06 37.9 4.2 46 18-64 209-255 (346)
228 PRK07428 nicotinate-nucleotide 90.3 0.55 1.2E-05 36.3 4.6 36 22-58 243-278 (288)
229 PRK07114 keto-hydroxyglutarate 90.3 0.56 1.2E-05 35.0 4.4 45 11-56 146-193 (222)
230 PRK13305 sgbH 3-keto-L-gulonat 90.2 0.33 7E-06 36.1 3.1 52 12-64 151-204 (218)
231 PRK09427 bifunctional indole-3 90.1 1.3 2.8E-05 36.4 6.7 52 13-66 199-253 (454)
232 COG1954 GlpP Glycerol-3-phosph 89.9 0.73 1.6E-05 33.6 4.6 38 11-49 133-171 (181)
233 PRK14565 triosephosphate isome 89.8 0.64 1.4E-05 35.1 4.5 55 9-64 175-230 (237)
234 COG2022 ThiG Uncharacterized e 89.8 1.4 3.1E-05 33.7 6.3 42 12-54 172-214 (262)
235 TIGR01859 fruc_bis_ald_ fructo 89.7 1 2.2E-05 34.6 5.6 43 12-55 190-234 (282)
236 PLN02274 inosine-5'-monophosph 89.4 0.74 1.6E-05 38.2 4.9 38 12-50 278-316 (505)
237 PF01081 Aldolase: KDPG and KH 89.2 0.81 1.8E-05 33.6 4.5 51 12-66 48-99 (196)
238 TIGR00259 thylakoid_BtpA membr 89.1 1 2.2E-05 34.5 5.1 41 13-55 190-231 (257)
239 PLN02460 indole-3-glycerol-pho 89.1 1.1 2.4E-05 35.6 5.4 42 24-66 290-332 (338)
240 PRK09722 allulose-6-phosphate 89.1 1.8 3.9E-05 32.4 6.4 40 24-64 171-212 (229)
241 cd04736 MDH_FMN Mandelate dehy 89.0 1 2.2E-05 35.9 5.3 37 13-50 227-263 (361)
242 TIGR01182 eda Entner-Doudoroff 88.8 1.1 2.4E-05 33.1 4.9 51 12-66 48-99 (204)
243 PRK13802 bifunctional indole-3 88.8 1.9 4E-05 37.3 7.0 53 13-66 200-255 (695)
244 PRK06015 keto-hydroxyglutarate 88.7 1.1 2.3E-05 33.0 4.8 51 12-66 44-95 (201)
245 cd03332 LMO_FMN L-Lactate 2-mo 88.5 1.2 2.5E-05 35.9 5.3 38 12-50 243-280 (383)
246 cd01571 NAPRTase_B Nicotinate 88.5 0.61 1.3E-05 36.1 3.6 43 13-56 230-278 (302)
247 PLN02979 glycolate oxidase 88.5 1.1 2.4E-05 36.0 5.1 38 12-50 213-250 (366)
248 PLN02716 nicotinate-nucleotide 88.3 1.2 2.6E-05 35.0 5.1 32 23-55 263-294 (308)
249 PRK05096 guanosine 5'-monophos 88.3 1 2.3E-05 35.8 4.8 36 12-48 140-176 (346)
250 PRK11197 lldD L-lactate dehydr 88.1 1.2 2.7E-05 35.7 5.2 37 13-50 236-272 (381)
251 COG0134 TrpC Indole-3-glycerol 88.1 2.8 6.1E-05 32.1 6.9 50 15-65 198-250 (254)
252 KOG1436 Dihydroorotate dehydro 88.0 0.78 1.7E-05 36.6 3.9 53 13-66 320-376 (398)
253 cd00516 PRTase_typeII Phosphor 87.6 1.2 2.7E-05 33.4 4.7 36 22-58 239-274 (281)
254 PRK05458 guanosine 5'-monophos 87.5 1.2 2.6E-05 35.1 4.7 39 12-51 129-168 (326)
255 PRK07107 inosine 5-monophospha 87.4 1.4 3E-05 36.6 5.3 38 12-50 272-311 (502)
256 TIGR01303 IMP_DH_rel_1 IMP deh 87.4 1.4 3E-05 36.4 5.2 36 12-49 255-292 (475)
257 KOG0538 Glycolate oxidase [Ene 87.4 1.1 2.4E-05 35.6 4.4 42 13-55 267-311 (363)
258 COG0159 TrpA Tryptophan syntha 87.2 1.8 3.9E-05 33.3 5.4 43 11-55 194-237 (265)
259 PRK08385 nicotinate-nucleotide 86.9 1.9 4E-05 33.3 5.4 32 23-55 232-263 (278)
260 PRK00042 tpiA triosephosphate 86.9 1 2.2E-05 34.1 4.0 54 9-62 181-243 (250)
261 PF01729 QRPTase_C: Quinolinat 86.7 1.4 3.1E-05 31.4 4.4 31 23-54 128-158 (169)
262 cd03315 MLE_like Muconate lact 86.7 1.7 3.8E-05 32.3 5.0 39 12-50 170-209 (265)
263 PTZ00314 inosine-5'-monophosph 86.6 1.7 3.7E-05 35.9 5.3 37 12-50 271-309 (495)
264 PLN02561 triosephosphate isome 86.5 1.6 3.6E-05 33.2 4.9 42 23-65 205-246 (253)
265 PRK06801 hypothetical protein; 86.5 2.2 4.8E-05 32.9 5.6 43 12-55 193-237 (286)
266 PLN02535 glycolate oxidase 86.5 1.6 3.5E-05 34.9 5.0 39 12-51 213-251 (364)
267 PF03437 BtpA: BtpA family; I 86.4 0.62 1.3E-05 35.5 2.5 47 12-60 190-236 (254)
268 PRK05567 inosine 5'-monophosph 86.4 1.7 3.7E-05 35.6 5.2 39 12-51 258-297 (486)
269 PLN02493 probable peroxisomal 86.3 1.7 3.7E-05 34.8 5.1 37 13-50 215-251 (367)
270 PRK06106 nicotinate-nucleotide 86.2 2.3 5E-05 32.9 5.6 32 23-55 239-270 (281)
271 cd03316 MR_like Mandelate race 86.2 1.6 3.5E-05 33.7 4.8 39 12-50 230-269 (357)
272 cd00381 IMPDH IMPDH: The catal 85.5 2.3 5E-05 33.2 5.4 37 12-50 124-162 (325)
273 PRK05718 keto-hydroxyglutarate 85.2 2.3 4.9E-05 31.5 4.9 51 12-66 55-106 (212)
274 PRK06843 inosine 5-monophospha 85.1 1.8 3.9E-05 35.1 4.7 39 12-51 183-222 (404)
275 COG0800 Eda 2-keto-3-deoxy-6-p 85.1 2.2 4.8E-05 31.8 4.8 56 12-71 53-110 (211)
276 PRK07896 nicotinate-nucleotide 85.0 1.7 3.7E-05 33.7 4.4 32 23-55 247-278 (289)
277 COG1058 CinA Predicted nucleot 84.7 0.51 1.1E-05 36.1 1.3 45 15-66 55-102 (255)
278 PRK06543 nicotinate-nucleotide 84.1 2.9 6.4E-05 32.3 5.3 34 24-58 239-272 (281)
279 cd04725 OMP_decarboxylase_like 84.1 2 4.3E-05 31.4 4.2 48 15-63 154-212 (216)
280 COG1908 FrhD Coenzyme F420-red 83.6 1.4 3E-05 30.5 2.9 27 24-51 34-60 (132)
281 PRK06552 keto-hydroxyglutarate 83.2 3.3 7.2E-05 30.5 5.1 55 12-70 53-112 (213)
282 PRK14905 triosephosphate isome 83.2 2.8 6E-05 33.4 5.0 38 23-60 214-251 (355)
283 TIGR01302 IMP_dehydrog inosine 83.1 2.2 4.8E-05 34.7 4.5 38 12-51 254-293 (450)
284 PRK06559 nicotinate-nucleotide 82.8 3.7 8E-05 32.0 5.4 32 23-55 242-273 (290)
285 PRK07188 nicotinate phosphorib 82.6 4.1 8.8E-05 32.5 5.7 47 11-57 263-316 (352)
286 cd04737 LOX_like_FMN L-Lactate 82.5 3.5 7.7E-05 32.7 5.3 38 12-50 211-248 (351)
287 PRK06978 nicotinate-nucleotide 82.3 3.9 8.4E-05 31.9 5.4 35 23-58 250-284 (294)
288 TIGR01334 modD putative molybd 82.2 1.8 3.9E-05 33.4 3.5 35 23-58 236-270 (277)
289 cd02809 alpha_hydroxyacid_oxid 82.2 3.7 8E-05 31.4 5.2 38 12-50 162-199 (299)
290 PF01070 FMN_dh: FMN-dependent 81.8 2.9 6.3E-05 33.1 4.6 39 12-51 215-253 (356)
291 KOG1606 Stationary phase-induc 81.8 2.1 4.5E-05 32.6 3.6 41 25-66 212-253 (296)
292 PF00478 IMPDH: IMP dehydrogen 81.7 2.4 5.3E-05 33.8 4.1 37 12-50 138-176 (352)
293 cd03319 L-Ala-DL-Glu_epimerase 81.4 3.8 8.3E-05 31.2 5.0 39 12-50 218-257 (316)
294 cd00945 Aldolase_Class_I Class 81.3 4.8 0.0001 27.7 5.1 39 12-51 160-201 (201)
295 PRK15492 triosephosphate isome 81.2 2.9 6.2E-05 31.9 4.2 40 23-62 213-252 (260)
296 PF00834 Ribul_P_3_epim: Ribul 81.2 2.5 5.3E-05 31.0 3.7 33 23-56 167-199 (201)
297 PRK07114 keto-hydroxyglutarate 81.0 2.5 5.5E-05 31.5 3.8 41 22-66 69-110 (222)
298 cd02922 FCB2_FMN Flavocytochro 80.6 4.4 9.5E-05 32.0 5.2 38 12-50 203-240 (344)
299 PRK09016 quinolinate phosphori 79.9 5.2 0.00011 31.2 5.3 33 23-56 253-285 (296)
300 TIGR01305 GMP_reduct_1 guanosi 79.9 3.8 8.3E-05 32.7 4.6 42 22-64 212-254 (343)
301 PRK08662 nicotinate phosphorib 79.8 4.4 9.5E-05 32.0 5.0 34 23-58 262-295 (343)
302 KOG2333 Uncharacterized conser 79.0 2.6 5.6E-05 35.5 3.6 57 15-71 445-505 (614)
303 COG0149 TpiA Triosephosphate i 77.5 5 0.00011 30.7 4.5 44 22-65 202-245 (251)
304 PRK06096 molybdenum transport 76.7 7.4 0.00016 30.1 5.3 31 23-54 237-267 (284)
305 PRK01222 N-(5'-phosphoribosyl) 76.1 5.4 0.00012 29.2 4.3 35 16-50 148-182 (210)
306 PF13277 YmdB: YmdB-like prote 75.3 6.1 0.00013 30.3 4.5 76 13-92 18-102 (253)
307 PRK14566 triosephosphate isome 75.3 5.7 0.00012 30.4 4.3 56 9-64 190-254 (260)
308 PRK09140 2-dehydro-3-deoxy-6-p 75.2 8.5 0.00019 28.1 5.1 50 12-65 50-101 (206)
309 PRK05437 isopentenyl pyrophosp 74.7 7.7 0.00017 30.6 5.0 38 12-50 176-216 (352)
310 cd00452 KDPG_aldolase KDPG and 74.7 9.8 0.00021 27.0 5.2 51 12-66 44-95 (190)
311 COG0800 Eda 2-keto-3-deoxy-6-p 74.3 5.6 0.00012 29.7 4.0 31 23-54 154-184 (211)
312 TIGR02708 L_lactate_ox L-lacta 74.3 8.6 0.00019 30.8 5.3 38 12-50 218-255 (367)
313 KOG3111 D-ribulose-5-phosphate 74.2 7.5 0.00016 29.1 4.6 48 14-62 160-208 (224)
314 PRK05377 fructose-1,6-bisphosp 74.1 5 0.00011 31.4 3.8 33 24-56 236-268 (296)
315 KOG2334 tRNA-dihydrouridine sy 73.9 5.3 0.00011 33.0 4.0 49 12-60 198-251 (477)
316 PLN02429 triosephosphate isome 73.2 4.4 9.5E-05 31.9 3.3 42 23-64 264-305 (315)
317 COG0135 TrpF Phosphoribosylant 72.9 5.5 0.00012 29.5 3.6 34 21-54 153-186 (208)
318 cd00949 FBP_aldolase_I_bact Fr 71.7 6.1 0.00013 30.9 3.7 33 24-56 233-265 (292)
319 cd00959 DeoC 2-deoxyribose-5-p 71.3 9 0.0002 27.6 4.4 37 12-49 162-201 (203)
320 TIGR02127 pyrF_sub2 orotidine 71.3 21 0.00045 27.2 6.5 54 11-64 198-257 (261)
321 TIGR00126 deoC deoxyribose-pho 70.6 6.9 0.00015 28.9 3.7 39 13-52 164-205 (211)
322 PF00121 TIM: Triosephosphate 70.4 2.6 5.6E-05 31.8 1.4 52 9-60 179-240 (244)
323 TIGR02151 IPP_isom_2 isopenten 68.5 14 0.0003 28.9 5.2 39 12-51 169-210 (333)
324 TIGR00419 tim triosephosphate 68.3 6.4 0.00014 29.0 3.1 33 23-55 170-202 (205)
325 PRK01254 hypothetical protein; 68.2 7.3 0.00016 33.9 3.8 59 13-72 139-211 (707)
326 cd02811 IDI-2_FMN Isopentenyl- 68.2 14 0.00031 28.7 5.2 38 12-50 168-208 (326)
327 PF00697 PRAI: N-(5'phosphorib 67.2 4.3 9.3E-05 29.2 2.0 31 22-52 147-177 (197)
328 PRK00955 hypothetical protein; 66.4 11 0.00024 32.3 4.5 59 13-71 113-184 (620)
329 cd01570 NAPRTase_A Nicotinate 66.2 17 0.00036 28.5 5.2 48 11-58 261-315 (327)
330 PF08497 Radical_SAM_N: Radica 65.2 3.9 8.5E-05 32.1 1.5 59 13-72 116-188 (302)
331 TIGR02026 BchE magnesium-proto 65.1 13 0.00028 30.5 4.6 57 12-68 81-139 (497)
332 PRK13958 N-(5'-phosphoribosyl) 64.9 9.8 0.00021 27.8 3.5 25 17-41 147-171 (207)
333 KOG2550 IMP dehydrogenase/GMP 64.6 6.5 0.00014 32.5 2.7 45 16-61 348-393 (503)
334 PF04131 NanE: Putative N-acet 64.5 13 0.00028 27.4 4.0 55 12-68 22-92 (192)
335 COG1712 Predicted dinucleotide 64.4 8.8 0.00019 29.4 3.2 33 33-66 74-106 (255)
336 PRK01130 N-acetylmannosamine-6 64.1 21 0.00046 25.7 5.2 54 12-66 46-116 (221)
337 COG0214 SNZ1 Pyridoxine biosyn 63.9 21 0.00046 27.6 5.2 45 13-58 197-244 (296)
338 PRK12484 nicotinate phosphorib 63.0 19 0.00042 29.5 5.2 48 12-59 263-317 (443)
339 COG0157 NadC Nicotinate-nucleo 62.6 21 0.00046 27.8 5.1 34 24-58 236-269 (280)
340 PRK11750 gltB glutamate syntha 62.6 9.2 0.0002 35.9 3.5 33 23-56 1068-1101(1485)
341 PRK13301 putative L-aspartate 62.4 11 0.00024 29.1 3.5 41 25-66 66-108 (267)
342 PLN02363 phosphoribosylanthran 61.8 16 0.00035 27.7 4.3 28 22-49 199-226 (256)
343 PF02662 FlpD: Methyl-viologen 61.7 8.5 0.00018 26.0 2.5 26 24-50 33-58 (124)
344 COG2204 AtoC Response regulato 60.4 21 0.00046 29.6 5.0 39 11-49 64-104 (464)
345 PRK09243 nicotinate phosphorib 59.7 25 0.00055 28.9 5.4 47 11-57 269-322 (464)
346 PRK08185 hypothetical protein; 58.9 52 0.0011 25.4 6.7 42 12-54 188-231 (283)
347 COG1411 Uncharacterized protei 58.0 31 0.00068 26.0 5.1 43 12-55 171-214 (229)
348 PRK00278 trpC indole-3-glycero 57.9 24 0.00052 26.5 4.7 49 12-61 101-150 (260)
349 COG1692 Calcineurin-like phosp 57.1 41 0.00089 26.0 5.7 56 12-68 20-83 (266)
350 cd04727 pdxS PdxS is a subunit 56.9 29 0.00062 27.1 4.9 38 12-51 102-139 (283)
351 COG0278 Glutaredoxin-related p 56.8 15 0.00032 24.6 2.9 51 13-65 4-64 (105)
352 COG0788 PurU Formyltetrahydrof 56.7 9.8 0.00021 29.6 2.3 58 13-71 129-193 (287)
353 PF04481 DUF561: Protein of un 55.8 19 0.00042 27.3 3.7 42 16-58 180-221 (242)
354 PF02310 B12-binding: B12 bind 55.7 15 0.00033 23.4 2.9 40 13-52 71-112 (121)
355 COG2185 Sbm Methylmalonyl-CoA 54.4 64 0.0014 22.7 6.0 45 22-66 40-89 (143)
356 PRK05198 2-dehydro-3-deoxyphos 54.1 23 0.0005 27.3 4.0 55 12-70 71-127 (264)
357 cd03329 MR_like_4 Mandelate ra 53.8 27 0.00058 27.4 4.4 38 13-50 231-270 (368)
358 PRK13962 bifunctional phosphog 53.2 21 0.00046 30.7 4.0 54 9-62 576-639 (645)
359 cd03321 mandelate_racemase Man 53.2 36 0.00078 26.5 5.1 39 12-50 227-266 (355)
360 PRK08227 autoinducer 2 aldolas 53.0 70 0.0015 24.5 6.5 48 13-61 183-236 (264)
361 KOG2550 IMP dehydrogenase/GMP 53.0 26 0.00056 29.1 4.3 35 12-47 281-316 (503)
362 PRK13957 indole-3-glycerol-pho 52.9 40 0.00087 25.6 5.1 49 12-61 92-141 (247)
363 PRK07998 gatY putative fructos 52.8 48 0.001 25.6 5.6 42 12-54 189-232 (283)
364 COG0352 ThiE Thiamine monophos 51.9 30 0.00065 25.6 4.2 40 14-54 94-134 (211)
365 PF00072 Response_reg: Respons 51.7 52 0.0011 19.9 5.1 40 9-48 57-98 (112)
366 cd04729 NanE N-acetylmannosami 51.5 56 0.0012 23.5 5.6 54 12-66 50-120 (219)
367 TIGR00343 pyridoxal 5'-phospha 51.2 33 0.00071 26.8 4.5 56 9-67 54-112 (287)
368 KOG0538 Glycolate oxidase [Ene 50.9 26 0.00057 28.0 3.9 37 13-50 214-250 (363)
369 TIGR01362 KDO8P_synth 3-deoxy- 50.1 30 0.00065 26.6 4.0 55 12-70 63-119 (258)
370 PRK07695 transcriptional regul 49.7 45 0.00097 23.7 4.8 39 14-53 86-124 (201)
371 KOG0623 Glutamine amidotransfe 49.4 25 0.00055 28.7 3.7 36 12-47 475-511 (541)
372 PF04481 DUF561: Protein of un 49.1 42 0.00092 25.5 4.6 38 12-51 51-88 (242)
373 PRK12457 2-dehydro-3-deoxyphos 48.7 29 0.00063 27.0 3.8 55 12-70 77-133 (281)
374 PF01791 DeoC: DeoC/LacD famil 48.2 52 0.0011 24.0 5.0 42 13-55 177-234 (236)
375 COG0069 GltB Glutamate synthas 47.9 18 0.0004 30.2 2.8 32 24-56 376-408 (485)
376 COG4148 ModC ABC-type molybdat 47.7 5.9 0.00013 31.5 -0.1 30 43-75 132-161 (352)
377 PLN02363 phosphoribosylanthran 47.2 30 0.00065 26.3 3.7 26 24-50 47-73 (256)
378 COG3588 Fructose-1,6-bisphosph 47.0 27 0.00058 27.7 3.4 36 23-58 255-297 (332)
379 COG4981 Enoyl reductase domain 46.8 18 0.00038 31.1 2.5 43 14-56 205-258 (717)
380 PF05952 ComX: Bacillus compet 46.8 15 0.00032 22.0 1.5 18 52-69 7-24 (57)
381 PF12974 Phosphonate-bd: ABC t 45.8 63 0.0014 23.1 5.1 39 13-51 19-57 (243)
382 PRK13397 3-deoxy-7-phosphohept 45.6 37 0.00081 25.8 4.0 55 13-70 70-125 (250)
383 cd01572 QPRTase Quinolinate ph 44.2 59 0.0013 24.7 4.9 51 12-66 170-221 (268)
384 cd01568 QPRTase_NadC Quinolina 42.8 72 0.0016 24.2 5.2 40 12-52 169-209 (269)
385 PRK12858 tagatose 1,6-diphosph 42.2 43 0.00093 26.5 4.0 37 21-58 240-283 (340)
386 COG0434 SgcQ Predicted TIM-bar 40.4 39 0.00085 26.0 3.3 41 12-54 195-235 (263)
387 PF08291 Peptidase_M15_3: Pept 40.4 26 0.00057 22.9 2.2 50 12-65 32-91 (110)
388 TIGR00640 acid_CoA_mut_C methy 40.3 1.1E+02 0.0024 20.6 5.4 45 22-66 30-79 (132)
389 PRK02615 thiamine-phosphate py 40.3 68 0.0015 25.5 4.9 39 15-54 231-270 (347)
390 PRK04180 pyridoxal biosynthesi 40.3 55 0.0012 25.7 4.2 56 9-67 61-119 (293)
391 cd00344 FBP_aldolase_I Fructos 40.2 33 0.00071 27.3 3.0 33 23-55 255-295 (328)
392 PRK01222 N-(5'-phosphoribosyl) 40.2 45 0.00098 24.3 3.6 24 26-50 5-29 (210)
393 PRK06852 aldolase; Validated 40.2 1.1E+02 0.0023 24.1 5.8 47 13-60 220-274 (304)
394 PRK06512 thiamine-phosphate py 40.1 76 0.0017 23.3 4.8 38 14-52 100-139 (221)
395 TIGR00167 cbbA ketose-bisphosp 39.7 1E+02 0.0022 23.8 5.7 42 12-54 196-239 (288)
396 PRK00366 ispG 4-hydroxy-3-meth 39.4 67 0.0015 25.9 4.7 37 12-49 70-106 (360)
397 PF00215 OMPdecase: Orotidine 39.3 32 0.00069 25.0 2.7 33 33-65 192-224 (226)
398 PRK07709 fructose-bisphosphate 39.2 1E+02 0.0022 23.9 5.5 42 12-54 193-236 (285)
399 TIGR00640 acid_CoA_mut_C methy 39.1 95 0.0021 21.0 4.9 43 13-55 73-117 (132)
400 PRK07455 keto-hydroxyglutarate 39.0 79 0.0017 22.5 4.7 39 12-51 52-91 (187)
401 PRK12738 kbaY tagatose-bisphos 38.8 1E+02 0.0022 23.8 5.5 42 12-54 192-235 (286)
402 COG0284 PyrF Orotidine-5'-phos 38.3 99 0.0021 23.3 5.2 53 12-65 165-228 (240)
403 TIGR03471 HpnJ hopanoid biosyn 37.6 49 0.0011 26.8 3.7 44 12-56 86-132 (472)
404 cd01573 modD_like ModD; Quinol 37.5 85 0.0018 23.9 4.9 43 13-56 173-215 (272)
405 PRK09195 gatY tagatose-bisphos 37.5 1.1E+02 0.0023 23.7 5.4 43 12-55 192-236 (284)
406 PF03480 SBP_bac_7: Bacterial 37.4 1.2E+02 0.0027 22.4 5.7 44 12-55 17-65 (286)
407 TIGR01858 tag_bisphos_ald clas 37.1 1.1E+02 0.0024 23.6 5.4 42 12-54 190-233 (282)
408 KOG0623 Glutamine amidotransfe 37.1 1.2E+02 0.0026 25.0 5.7 45 11-56 302-361 (541)
409 PRK03673 hypothetical protein; 36.7 37 0.00081 27.4 2.9 46 15-66 52-102 (396)
410 PRK13958 N-(5'-phosphoribosyl) 36.2 53 0.0012 23.9 3.4 38 28-66 5-47 (207)
411 PRK08610 fructose-bisphosphate 36.0 78 0.0017 24.5 4.5 41 12-53 193-235 (286)
412 PRK03670 competence damage-ind 36.0 18 0.00038 27.4 0.9 38 23-66 62-102 (252)
413 COG4024 Uncharacterized protei 35.8 39 0.00084 25.1 2.6 30 22-68 123-153 (218)
414 cd08451 PBP2_BudR The C-termin 35.2 1.1E+02 0.0025 19.6 4.7 49 11-60 17-66 (199)
415 PRK03094 hypothetical protein; 35.1 51 0.0011 20.9 2.8 22 21-42 56-77 (80)
416 cd02808 GltS_FMN Glutamate syn 35.0 1E+02 0.0022 24.6 5.2 39 12-50 203-244 (392)
417 KOG3651 Protein kinase C, alph 34.5 27 0.00059 28.0 1.8 29 38-66 112-140 (429)
418 PF04095 NAPRTase: Nicotinate 34.5 79 0.0017 23.6 4.2 37 24-60 150-190 (245)
419 PRK12857 fructose-1,6-bisphosp 34.4 1.3E+02 0.0029 23.2 5.5 42 12-54 192-235 (284)
420 PRK09427 bifunctional indole-3 34.3 63 0.0014 26.6 3.9 54 14-68 248-305 (454)
421 TIGR00078 nadC nicotinate-nucl 34.3 1E+02 0.0023 23.4 4.9 51 12-66 166-217 (265)
422 PRK12737 gatY tagatose-bisphos 34.2 1.3E+02 0.0029 23.2 5.5 43 12-55 192-236 (284)
423 COG2087 CobU Adenosyl cobinami 34.2 60 0.0013 23.6 3.3 45 24-70 2-51 (175)
424 PF03447 NAD_binding_3: Homose 34.1 89 0.0019 19.9 4.0 41 24-65 62-104 (117)
425 smart00062 PBPb Bacterial peri 34.0 1.3E+02 0.0029 19.4 5.1 39 13-52 29-67 (219)
426 PF08659 KR: KR domain; Inter 33.5 1E+02 0.0022 21.3 4.5 30 25-54 3-35 (181)
427 TIGR01361 DAHP_synth_Bsub phos 33.4 80 0.0017 23.9 4.1 54 14-70 81-135 (260)
428 COG1830 FbaB DhnA-type fructos 33.2 1.2E+02 0.0025 23.5 4.9 44 15-59 195-245 (265)
429 TIGR01928 menC_lowGC/arch o-su 33.1 1.1E+02 0.0024 23.5 5.0 38 13-50 214-252 (324)
430 COG1880 CdhB CO dehydrogenase/ 32.9 1.1E+02 0.0024 22.1 4.5 17 15-31 56-72 (170)
431 cd00885 cinA Competence-damage 32.9 51 0.0011 23.2 2.8 46 15-66 50-100 (170)
432 TIGR03247 glucar-dehydr glucar 32.5 95 0.0021 25.3 4.6 37 13-49 270-307 (441)
433 PRK13803 bifunctional phosphor 31.9 57 0.0012 27.7 3.4 45 22-66 159-210 (610)
434 PRK00208 thiG thiazole synthas 31.8 63 0.0014 24.8 3.3 28 24-51 13-41 (250)
435 TIGR01513 NAPRTase_put putativ 31.6 1.1E+02 0.0023 25.3 4.8 45 12-56 261-312 (443)
436 PRK14017 galactonate dehydrata 31.6 1.1E+02 0.0024 24.0 4.8 39 12-50 218-257 (382)
437 cd03323 D-glucarate_dehydratas 31.6 1E+02 0.0022 24.6 4.6 37 13-49 252-289 (395)
438 CHL00162 thiG thiamin biosynth 31.6 64 0.0014 25.0 3.3 28 24-51 19-47 (267)
439 PRK10766 DNA-binding transcrip 31.5 1.4E+02 0.003 20.3 4.9 38 12-49 63-101 (221)
440 cd03328 MR_like_3 Mandelate ra 31.5 1.2E+02 0.0026 23.6 5.0 39 12-50 223-264 (352)
441 PF05690 ThiG: Thiazole biosyn 31.3 71 0.0015 24.5 3.5 29 23-51 10-39 (247)
442 PF12419 DUF3670: SNF2 Helicas 31.0 46 0.001 22.7 2.3 41 26-67 77-120 (141)
443 PRK02714 O-succinylbenzoate sy 31.0 1.3E+02 0.0029 23.1 5.0 39 12-50 207-246 (320)
444 PF09370 TIM-br_sig_trns: TIM- 30.9 78 0.0017 24.5 3.7 37 13-50 3-41 (268)
445 cd03317 NAAAR N-acylamino acid 30.9 1.3E+02 0.0028 23.2 5.0 38 13-50 219-257 (354)
446 TIGR01502 B_methylAsp_ase meth 30.8 1.3E+02 0.0029 24.4 5.2 38 13-50 283-326 (408)
447 cd03327 MR_like_2 Mandelate ra 30.5 1.2E+02 0.0026 23.4 4.8 38 13-50 213-251 (341)
448 PRK15072 bifunctional D-altron 30.4 1.2E+02 0.0026 24.1 4.9 38 13-50 248-286 (404)
449 PF13941 MutL: MutL protein 30.4 70 0.0015 26.5 3.6 58 12-70 144-217 (457)
450 COG1032 Fe-S oxidoreductase [E 30.3 55 0.0012 25.6 2.9 53 17-69 96-149 (490)
451 KOG4175 Tryptophan synthase al 30.0 85 0.0018 23.9 3.6 43 12-54 7-55 (268)
452 PF12728 HTH_17: Helix-turn-he 29.9 49 0.0011 18.1 1.9 36 31-66 13-48 (51)
453 PF01116 F_bP_aldolase: Fructo 29.7 1.7E+02 0.0036 22.6 5.4 42 12-54 194-238 (287)
454 PF00274 Glycolytic: Fructose- 29.7 68 0.0015 25.7 3.3 45 13-57 238-294 (348)
455 cd03322 rpsA The starvation se 29.6 1.4E+02 0.0029 23.4 5.0 38 13-50 205-243 (361)
456 PRK11613 folP dihydropteroate 29.5 1.1E+02 0.0025 23.5 4.4 49 15-66 83-131 (282)
457 PF03698 UPF0180: Uncharacteri 29.4 75 0.0016 20.1 2.9 22 21-42 56-77 (80)
458 cd04728 ThiG Thiazole synthase 29.3 74 0.0016 24.4 3.3 30 23-52 11-41 (248)
459 PLN03033 2-dehydro-3-deoxyphos 29.3 1E+02 0.0023 24.1 4.2 55 12-70 77-133 (290)
460 COG1856 Uncharacterized homolo 28.8 1.6E+02 0.0034 22.8 5.0 51 12-65 78-129 (275)
461 TIGR01927 menC_gamma/gm+ o-suc 28.8 1.4E+02 0.0031 22.8 4.9 39 12-50 196-235 (307)
462 TIGR00433 bioB biotin syntheta 28.6 1.7E+02 0.0037 21.7 5.2 42 21-65 110-152 (296)
463 PRK10701 DNA-binding transcrip 28.5 1.8E+02 0.0039 20.2 5.1 38 12-49 62-100 (240)
464 PRK07428 nicotinate-nucleotide 28.4 1.1E+02 0.0025 23.6 4.3 51 11-65 183-234 (288)
465 KOG4175 Tryptophan synthase al 28.3 1.3E+02 0.0029 22.8 4.4 43 11-55 195-239 (268)
466 cd00947 TBP_aldolase_IIB Tagat 27.8 2.1E+02 0.0045 22.0 5.6 42 12-54 186-229 (276)
467 cd08613 GDPD_GDE4_like_1 Glyce 27.8 1.3E+02 0.0028 23.7 4.5 37 21-58 263-309 (309)
468 TIGR01098 3A0109s03R phosphate 27.8 2E+02 0.0042 20.4 5.2 40 13-52 54-93 (254)
469 PRK08072 nicotinate-nucleotide 27.7 1.8E+02 0.004 22.3 5.3 53 10-66 174-227 (277)
470 COG0191 Fba Fructose/tagatose 27.6 1.7E+02 0.0037 22.9 5.1 34 11-44 193-228 (286)
471 PRK09250 fructose-bisphosphate 27.5 1.3E+02 0.0028 24.2 4.5 37 22-59 281-326 (348)
472 PRK10859 membrane-bound lytic 27.5 1.6E+02 0.0036 23.8 5.3 40 12-51 69-108 (482)
473 PRK10529 DNA-binding transcrip 27.4 1.7E+02 0.0037 19.9 4.8 38 12-49 62-100 (225)
474 COG0157 NadC Nicotinate-nucleo 27.1 1.2E+02 0.0026 23.7 4.1 41 9-50 173-214 (280)
475 cd03412 CbiK_N Anaerobic cobal 27.1 69 0.0015 21.4 2.6 43 24-66 77-121 (127)
476 PRK05500 bifunctional orotidin 27.0 1.5E+02 0.0033 24.7 5.0 52 11-62 191-249 (477)
477 PRK11572 copper homeostasis pr 26.5 2.3E+02 0.005 21.6 5.6 24 24-47 172-195 (248)
478 PLN02885 nicotinate phosphorib 26.5 94 0.002 26.4 3.7 34 24-57 350-384 (545)
479 TIGR03264 met_CoM_red_C methyl 26.4 43 0.00094 24.6 1.5 15 16-30 122-137 (194)
480 KOG4201 Anthranilate synthase 26.3 2E+02 0.0043 22.2 5.1 38 24-62 239-277 (289)
481 TIGR02534 mucon_cyclo muconate 26.3 1.7E+02 0.0037 22.8 5.0 38 13-50 229-267 (368)
482 PRK15440 L-rhamnonate dehydrat 26.2 1.3E+02 0.0029 24.0 4.4 38 13-50 250-290 (394)
483 PF00218 IGPS: Indole-3-glycer 26.2 2E+02 0.0043 21.8 5.2 47 12-59 99-146 (254)
484 PRK11517 transcriptional regul 25.7 1.8E+02 0.004 19.6 4.6 39 12-50 61-100 (223)
485 PRK02901 O-succinylbenzoate sy 25.4 1.8E+02 0.004 22.7 5.0 38 13-50 175-213 (327)
486 PF05636 HIGH_NTase1: HIGH Nuc 25.4 1.4E+02 0.0031 24.0 4.5 36 13-49 20-68 (388)
487 COG1613 Sbp ABC-type sulfate t 25.2 1.7E+02 0.0037 23.5 4.7 56 13-68 55-126 (348)
488 PRK13304 L-aspartate dehydroge 25.0 1E+02 0.0022 23.0 3.4 45 21-66 62-107 (265)
489 PRK13303 L-aspartate dehydroge 24.9 90 0.002 23.4 3.1 43 21-64 62-105 (265)
490 PRK06256 biotin synthase; Vali 24.9 1.8E+02 0.0039 22.2 4.8 33 17-50 135-168 (336)
491 cd00308 enolase_like Enolase-s 24.8 2.2E+02 0.0047 20.4 5.0 38 13-50 136-174 (229)
492 TIGR03871 ABC_peri_MoxJ_2 quin 24.8 2.4E+02 0.0052 19.6 5.2 38 12-49 24-62 (232)
493 PRK10955 DNA-binding transcrip 24.5 2.2E+02 0.0047 19.4 4.9 38 12-49 61-99 (232)
494 COG0274 DeoC Deoxyribose-phosp 24.3 1.1E+02 0.0023 23.2 3.3 42 12-54 171-215 (228)
495 PF01408 GFO_IDH_MocA: Oxidore 24.0 1E+02 0.0022 19.3 2.8 33 36-68 54-87 (120)
496 PRK11840 bifunctional sulfur c 23.9 1E+02 0.0022 24.6 3.3 28 24-51 86-114 (326)
497 cd03325 D-galactonate_dehydrat 23.5 1.9E+02 0.0041 22.4 4.8 38 13-50 218-256 (352)
498 PRK10693 response regulator of 23.5 2.1E+02 0.0045 21.6 4.9 38 12-49 34-73 (303)
499 COG2192 Predicted carbamoyl tr 23.5 2.1E+02 0.0045 24.6 5.1 41 12-52 499-548 (555)
500 COG1136 SalX ABC-type antimicr 23.3 22 0.00048 26.7 -0.5 27 47-76 150-176 (226)
No 1
>PLN02411 12-oxophytodienoate reductase
Probab=99.83 E-value=2.3e-20 Score=147.72 Aligned_cols=82 Identities=60% Similarity=1.119 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCCC
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYPF 92 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p~ 92 (104)
.++.||+.+++|||++|+|+++.|+++|++|.+|+|++||++|+|||||+|+++|++++++++.+||+.+...||+|||+
T Consensus 304 ~a~~ik~~v~~pvi~~G~i~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~g~~l~~~~~~~~~~~~~~~gy~~~p~ 383 (391)
T PLN02411 304 LMRTLRRAYQGTFMCSGGFTRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKLNAPLNKYIRKTFYTQDPVVGYTDYPF 383 (391)
T ss_pred HHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhcCCCCCCCChhheeCCCCCCCCCcccc
Confidence 56789999999999999998899999999999999999999999999999999999999999999996432359999998
Q ss_pred CC
Q 046574 93 LD 94 (104)
Q Consensus 93 ~~ 94 (104)
++
T Consensus 384 ~~ 385 (391)
T PLN02411 384 LS 385 (391)
T ss_pred cc
Confidence 74
No 2
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.75 E-value=4.3e-18 Score=133.63 Aligned_cols=81 Identities=40% Similarity=0.632 Sum_probs=74.3
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDYP 91 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~p 91 (104)
...+.||+.+++||+++|+++++.|+++|++|.+|+|++||++|+|||||+|+++|+++++++..+||.+. ..||++||
T Consensus 282 ~~~~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~~g~~~~~~~~~~~~~~~-~~~~~~~~ 360 (362)
T PRK10605 282 AFREKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQRKAELNPQRPESFYGGG-AEGYTDYP 360 (362)
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHhcCCCCCCCChhhhcCCC-CCCCcCCC
Confidence 35678999999999999999999999999999999999999999999999999999999999988898754 47999999
Q ss_pred CC
Q 046574 92 FL 93 (104)
Q Consensus 92 ~~ 93 (104)
++
T Consensus 361 ~~ 362 (362)
T PRK10605 361 TL 362 (362)
T ss_pred CC
Confidence 64
No 3
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.61 E-value=1.6e-15 Score=119.52 Aligned_cols=82 Identities=38% Similarity=0.590 Sum_probs=70.1
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCcccC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTDY 90 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d~ 90 (104)
..+..++....+|||++|+| ++++|+++|++|.+|||+|||+||+|||||+|+++|++. .++.++++.....||.++
T Consensus 278 ~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g~~~--~~~~~~~~~~~~~~~~~~ 355 (363)
T COG1902 278 EFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEGREL--EIRPCIYCNQYCLGYTDY 355 (363)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcCCCc--cccccccccchhhhcccc
Confidence 45667888889999999999 999999999999999999999999999999999999987 455667763225788888
Q ss_pred CCCCC
Q 046574 91 PFLDT 95 (104)
Q Consensus 91 p~~~~ 95 (104)
+....
T Consensus 356 ~~~~~ 360 (363)
T COG1902 356 PLLKE 360 (363)
T ss_pred ccchh
Confidence 87653
No 4
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.55 E-value=1.7e-14 Score=112.40 Aligned_cols=64 Identities=55% Similarity=0.956 Sum_probs=60.1
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCc
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNR 75 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~ 75 (104)
..++.||+.+++|||++|+|+++.|+++|++|.+|+|++||++|+||||++|+++|+++..+++
T Consensus 275 ~~~~~ik~~~~ipvi~~G~i~~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~~g~~~~~~~~ 338 (338)
T cd02933 275 DFLDFLRKAFKGPLIAAGGYDAESAEAALADGKADLVAFGRPFIANPDLVERLKNGAPLNEYDR 338 (338)
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHhcCCCCCCCCC
Confidence 4677899999999999999999999999999999999999999999999999999999988764
No 5
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=99.54 E-value=1.2e-14 Score=115.26 Aligned_cols=86 Identities=49% Similarity=0.802 Sum_probs=77.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCCCCccccccCCCCCCccc
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNKYNRETFYVSDPVVGYTD 89 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~~~~~~~~~~~gy~d 89 (104)
+.++.+|..++++||..||. +++.+.++|++|..|+|++||++++|||||.|++.|.+++.+++.++|......||+|
T Consensus 307 ~f~e~~r~~~kgt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~~~~n~~d~~t~~~~~~~~g~~~ 386 (400)
T KOG0134|consen 307 EFAETIRPVFKGTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNGLPLNKYDRSTFYTDMAVKGYAD 386 (400)
T ss_pred hhhhHHHHHhcCcEEEecCCccCHHHHHHHHhcCCceeEEecchhccCCchhHHHHhCCCcccccccccccccchhcccc
Confidence 56677999999998888744 9999999999999999999999999999999999999999999999997655789999
Q ss_pred CCCCCCcc
Q 046574 90 YPFLDTSS 97 (104)
Q Consensus 90 ~p~~~~~~ 97 (104)
||++++..
T Consensus 387 ~~~~~~~~ 394 (400)
T KOG0134|consen 387 YPQMEQMA 394 (400)
T ss_pred ChhHHHHH
Confidence 99887643
No 6
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.53 E-value=1.6e-14 Score=112.28 Aligned_cols=59 Identities=37% Similarity=0.510 Sum_probs=54.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPL 70 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l 70 (104)
..++.+|+.+++|||++|+| +++.|+++|++|.+|+|++||++|+|||||+|+++|++.
T Consensus 281 ~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~~g~~d 340 (341)
T PF00724_consen 281 DLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAREGRED 340 (341)
T ss_dssp HHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHHHTTGG
T ss_pred hhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHHcCCcc
Confidence 46788999999999999999 888899999999999999999999999999999999864
No 7
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.43 E-value=3.1e-13 Score=106.33 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=54.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP 69 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~ 69 (104)
..++.+|+.+++|||++|++ +++.|+++|++|.+|+|++||++|+||||++|+++|+.
T Consensus 279 ~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~ 337 (370)
T cd02929 279 PYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIREGRI 337 (370)
T ss_pred HHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHHHcCCc
Confidence 35677999999999999999 99999999999999999999999999999999999984
No 8
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.41 E-value=5.7e-13 Score=105.25 Aligned_cols=58 Identities=28% Similarity=0.393 Sum_probs=54.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP 69 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~ 69 (104)
..++.+|+.+++|||++|++ +++.|+++|++|.+|+|++||++|+||||++|+++|+.
T Consensus 295 ~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~ 353 (382)
T cd02931 295 PYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRRGRF 353 (382)
T ss_pred HHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHcCCc
Confidence 35677999999999999999 99999999999999999999999999999999999984
No 9
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.40 E-value=5.8e-13 Score=104.87 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=58.1
Q ss_pred hHHHHHHHHcCCeEEEeCCC-------------------CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC--C
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-------------------DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP--L 70 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-------------------~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~--l 70 (104)
..++.+|+.+++|||++|+| +++.|+++|++|.+|+|++||++|+||+|++|+++|++ +
T Consensus 270 ~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~g~~~~I 349 (361)
T cd04747 270 NLAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVREGRLDEL 349 (361)
T ss_pred hHHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHcCCcccc
Confidence 35667899999999999997 88999999999999999999999999999999999984 6
Q ss_pred CCCCcc
Q 046574 71 NKYNRE 76 (104)
Q Consensus 71 ~~~d~~ 76 (104)
.++|++
T Consensus 350 r~~~~~ 355 (361)
T cd04747 350 IPFSRA 355 (361)
T ss_pred cCCCHH
Confidence 666654
No 10
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.39 E-value=8.6e-13 Score=102.89 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=54.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP 69 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~ 69 (104)
..++.+++.+++|||++|+| ++++|++++++|.+|+|++||++|+||||++++++|++
T Consensus 275 ~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g~~ 333 (343)
T cd04734 275 PLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREGRE 333 (343)
T ss_pred HHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcCCc
Confidence 45677999999999999999 99999999999999999999999999999999999985
No 11
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.39 E-value=8.6e-13 Score=102.34 Aligned_cols=56 Identities=29% Similarity=0.433 Sum_probs=52.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g 67 (104)
..++.||+.+++|||++|++ +++.|+++|++|.+|+|++||++|+||+|++|+++|
T Consensus 282 ~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~~g 338 (338)
T cd04733 282 EFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLLAG 338 (338)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHhcC
Confidence 45567999999999999999 999999999999999999999999999999999986
No 12
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.36 E-value=9.5e-13 Score=102.67 Aligned_cols=59 Identities=22% Similarity=0.226 Sum_probs=55.1
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPL 70 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l 70 (104)
..++.+|+.+++|||++|++ +++.|+++|++|.+|+|++||++|+||||++|++++...
T Consensus 265 ~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~~~~ 324 (337)
T PRK13523 265 PFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKELGF 324 (337)
T ss_pred HHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHHcCC
Confidence 46678999999999999999 999999999999999999999999999999999998755
No 13
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.30 E-value=4.4e-12 Score=98.97 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP 69 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~ 69 (104)
..+.+|+.+++|||++|++ ++++++++|++|.+|+|++||++|+||||++|+++|+.
T Consensus 267 ~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~g~~ 324 (353)
T cd02930 267 ATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAAGRA 324 (353)
T ss_pred HHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHhCCc
Confidence 4567999999999999999 99999999999999999999999999999999999985
No 14
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.29 E-value=8.8e-12 Score=95.43 Aligned_cols=56 Identities=39% Similarity=0.581 Sum_probs=52.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g 67 (104)
..++.+++.+++|||++|+| ++++++++|++|.+|+|++||++|+||||++|+++|
T Consensus 271 ~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~~g 327 (327)
T cd02803 271 ELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKAREG 327 (327)
T ss_pred HHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHhcC
Confidence 46677999999999999999 899999999998899999999999999999999876
No 15
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.23 E-value=2.1e-11 Score=94.44 Aligned_cols=55 Identities=29% Similarity=0.334 Sum_probs=51.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
..++.+++.+++|||++|++ ++++++++|++|.+|+|++||++|+||||++|+++
T Consensus 280 ~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k~~~ 335 (336)
T cd02932 280 PFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLHAAA 335 (336)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHHHhh
Confidence 45677999999999999999 99999999999999999999999999999999875
No 16
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.22 E-value=1.7e-11 Score=95.87 Aligned_cols=58 Identities=24% Similarity=0.399 Sum_probs=52.3
Q ss_pred hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCC
Q 046574 12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPL 70 (104)
Q Consensus 12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l 70 (104)
...+.+++.+ ++|||++|+| +++.|+++|++| +|+|++||++|+||||++|+++|++.
T Consensus 272 ~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~g-aD~V~~gR~liadPdl~~k~~~G~~~ 332 (353)
T cd04735 272 TIMELVKERIAGRLPLIAVGSINTPDDALEALETG-ADLVAIGRGLLVDPDWVEKIKEGRED 332 (353)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CChHHHhHHHHhCccHHHHHHcCChh
Confidence 3456788887 6799999999 999999999996 99999999999999999999999864
No 17
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.13 E-value=1.7e-10 Score=97.77 Aligned_cols=60 Identities=23% Similarity=0.213 Sum_probs=55.2
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLN 71 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~ 71 (104)
..++.+|+.+++|||++|+| +++.|+++|++|.+|+|++||++|+||+|+.+........
T Consensus 677 ~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 677 PFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHEAAEIGYR 737 (765)
T ss_pred HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHHHHHcCCC
Confidence 45678999999999999999 9999999999999999999999999999999998877664
No 18
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.05 E-value=4.6e-10 Score=81.73 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=50.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g 67 (104)
+....+++..++|||++||+ ++++++++++.+.+|+|++||++++||+|++++++.
T Consensus 173 ~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~~~ 229 (231)
T cd02801 173 DYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKEL 229 (231)
T ss_pred HHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhhhc
Confidence 34567888888999999999 999999999987799999999999999999998764
No 19
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.00 E-value=1.1e-09 Score=84.84 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=52.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~ 68 (104)
+....+++.+++|||++|+| |+++|+++++.+.+|.|.+||++|.||.|.++++.|.
T Consensus 184 ~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~ 241 (312)
T PRK10550 184 QAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNE 241 (312)
T ss_pred HHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCC
Confidence 35678899999999999999 9999999999888999999999999999999998876
No 20
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.90 E-value=2.9e-09 Score=81.19 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=51.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~ 68 (104)
.....+++.++.|||++||| ++++|++++..| +|+|.+||+++.||+++++++++.
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aG-Ad~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 224 RMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAG-ASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcC-CCceeEcHHHhcCcHHHHHHHHHH
Confidence 35567888889999999999 999999999999 899999999999999999999876
No 21
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=98.88 E-value=3.7e-09 Score=80.48 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~ 68 (104)
....+++.+++|||++||| ++++|++++..| +|+|.+||+++.||+|+++++.+.
T Consensus 225 ~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l 280 (300)
T TIGR01037 225 MVYDVYKMVDIPIIGVGGITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGL 280 (300)
T ss_pred HHHHHHhcCCCCEEEECCCCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHH
Confidence 4556788888999999999 999999999988 999999999999999999998876
No 22
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.86 E-value=6.6e-09 Score=80.02 Aligned_cols=55 Identities=25% Similarity=0.284 Sum_probs=50.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+....+++.+++|||++||| ++++++++++.+.+|+|.+||++++||.|.++++.
T Consensus 182 ~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~ 237 (319)
T TIGR00737 182 DIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQ 237 (319)
T ss_pred HHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHH
Confidence 35567888889999999999 99999999987779999999999999999999875
No 23
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.86 E-value=6e-09 Score=79.09 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=51.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP 69 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~ 69 (104)
.....+++.+++|||++||| ++++|++++..| +|+|.+||+++.||+++++++.+..
T Consensus 221 ~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~ 278 (296)
T cd04740 221 RMVYQVYKAVEIPIIGVGGIASGEDALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLE 278 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHH
Confidence 34566788888999999999 999999999999 8999999999999999999998763
No 24
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.74 E-value=2e-08 Score=75.76 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=48.8
Q ss_pred HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhC
Q 046574 13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFN 67 (104)
Q Consensus 13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g 67 (104)
....+++.+ +.|||++||| +++++.+++..| +|+|.+||+++.| |+++++++++
T Consensus 232 ~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~G-Ad~V~vg~a~~~~GP~~~~~i~~~ 289 (289)
T cd02810 232 WVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAG-ASAVQVATALMWDGPDVIRKIKKE 289 (289)
T ss_pred HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcC-ccHheEcHHHHhcCccHHHHHhcC
Confidence 456788888 7899999999 899999999999 9999999999999 9999998753
No 25
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=98.70 E-value=5.9e-08 Score=75.27 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=49.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+....+++.+++|||++||| |+++++++++.+.+|.|.+||+++.||.+..++.+
T Consensus 184 ~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~ 239 (321)
T PRK10415 184 DSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQH 239 (321)
T ss_pred HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHH
Confidence 35567888889999999999 99999999987779999999999999999988875
No 26
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=98.55 E-value=2.2e-07 Score=72.38 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=46.7
Q ss_pred HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
....+++.+ ++|||++||| ++++++++++ + +|.|.+||+++.||.+.++++.
T Consensus 195 ~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~-aDgVmIGRa~l~nP~~~~~~~~ 248 (333)
T PRK11815 195 RVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-H-VDGVMIGRAAYHNPYLLAEVDR 248 (333)
T ss_pred HHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-c-CCEEEEcHHHHhCCHHHHHHHH
Confidence 456678876 7899999999 9999999996 4 9999999999999999999876
No 27
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.43 E-value=2.6e-07 Score=72.20 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=48.5
Q ss_pred HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574 13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA 68 (104)
Q Consensus 13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~ 68 (104)
....+++.+ ++|||++||| ++++|.+.+..| +|+|.+||+++.+ |+++.++.++.
T Consensus 278 ~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aG-Ad~V~v~~~~~~~gP~~~~~i~~~L 336 (344)
T PRK05286 278 VIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAG-ASLVQIYSGLIYEGPGLVKEIVRGL 336 (344)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CCHHHHHHHHHHhCchHHHHHHHHH
Confidence 455678887 5799999999 999999999988 8999999999985 99999998754
No 28
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.42 E-value=5.1e-07 Score=70.04 Aligned_cols=55 Identities=27% Similarity=0.292 Sum_probs=48.6
Q ss_pred hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhC
Q 046574 12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFN 67 (104)
Q Consensus 12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g 67 (104)
+....+++.+ +.|||++||| |+++|.+.+..| +|+|.+||+++.+ |+++.++.++
T Consensus 268 ~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aG-Ad~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 268 EVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAG-ASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred HHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcC-CCHHhccHHHHhhCcHHHHHHHhc
Confidence 3456688888 6799999999 999999999988 8999999999986 9999999765
No 29
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.33 E-value=1.6e-06 Score=64.14 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=50.1
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g 67 (104)
...+.+++.+++||+++||| +.+++++++..| +|.|.+|+.++.||+++.++.+.
T Consensus 61 ~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G-~~~v~ig~~~~~~p~~~~~i~~~ 116 (243)
T cd04731 61 DVVERVAEEVFIPLTVGGGIRSLEDARRLLRAG-ADKVSINSAAVENPELIREIAKR 116 (243)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CceEEECchhhhChHHHHHHHHH
Confidence 46677888888999999999 999999999988 89999999999999999998774
No 30
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.25 E-value=3.2e-06 Score=65.77 Aligned_cols=52 Identities=25% Similarity=0.339 Sum_probs=45.7
Q ss_pred HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
....+++.+ ++|||+||+| |++++++.+. | +|.|.+||+++.||.+..++.+
T Consensus 185 ~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g-~dgVMigRgal~nP~if~~~~~ 238 (318)
T TIGR00742 185 RVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-H-VDGVMVGREAYENPYLLANVDR 238 (318)
T ss_pred HHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-C-CCEEEECHHHHhCCHHHHHHHH
Confidence 345677777 7899999999 9999999995 5 9999999999999999988876
No 31
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.24 E-value=2.3e-06 Score=66.40 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=48.2
Q ss_pred HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCCC
Q 046574 14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNAP 69 (104)
Q Consensus 14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~~ 69 (104)
...+++.++.|||++||| |+++|.+.+..| +|+|.+||+++.+ |+++.++..+..
T Consensus 231 v~~~~~~~~ipIig~GGI~s~~Da~e~l~aG-A~~V~v~t~~~~~g~~~~~~i~~~L~ 287 (334)
T PRK07565 231 IAILSGRVGADLAATTGVHDAEDVIKMLLAG-ADVVMIASALLRHGPDYIGTILRGLE 287 (334)
T ss_pred HHHHHhhcCCCEEEECCCCCHHHHHHHHHcC-CCceeeehHHhhhCcHHHHHHHHHHH
Confidence 344667778899999999 999999999988 8999999999996 999999888763
No 32
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.24 E-value=3.6e-06 Score=61.47 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=50.7
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~ 68 (104)
.....+++.++.||++.||| ++++++++++.| +|.|.+|+..+.||++..++.+..
T Consensus 63 ~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~G-ad~vvigs~~l~dp~~~~~i~~~~ 119 (234)
T cd04732 63 ELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLG-VSRVIIGTAAVKNPELVKELLKEY 119 (234)
T ss_pred HHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECchHHhChHHHHHHHHHc
Confidence 46677888888999999999 999999999999 999999999999999999988753
No 33
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.14 E-value=7.8e-06 Score=60.99 Aligned_cols=56 Identities=23% Similarity=0.234 Sum_probs=50.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~ 68 (104)
+..+.+++.+++||+++||+ +.+++++++..| +|.|.+|+.++.||+++.++...-
T Consensus 64 ~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~G-a~~Viigt~~l~~p~~~~ei~~~~ 120 (253)
T PRK02083 64 DVVERVAEQVFIPLTVGGGIRSVEDARRLLRAG-ADKVSINSAAVANPELISEAADRF 120 (253)
T ss_pred HHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcC-CCEEEEChhHhhCcHHHHHHHHHc
Confidence 35566777788899999999 999999999987 899999999999999999998853
No 34
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.12 E-value=9.5e-06 Score=60.76 Aligned_cols=54 Identities=24% Similarity=0.234 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g 67 (104)
....+++.++.||++.||+ +.+++++++..| +|.|.+|+.++.||++++++.+.
T Consensus 65 ~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~G-a~~vivgt~~~~~p~~~~~~~~~ 119 (254)
T TIGR00735 65 VVERTAETVFIPLTVGGGIKSIEDVDKLLRAG-ADKVSINTAAVKNPELIYELADR 119 (254)
T ss_pred HHHHHHHhcCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChhHhhChHHHHHHHHH
Confidence 4566777788899999999 999999999988 89999999999999999998764
No 35
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=7.6e-06 Score=63.79 Aligned_cols=53 Identities=26% Similarity=0.282 Sum_probs=48.5
Q ss_pred hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
+....+++.++ +|||+||+| |+++|.+.++...+|.|.+||+.+.||.+...+
T Consensus 187 ~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i 241 (323)
T COG0042 187 DYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI 241 (323)
T ss_pred HHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH
Confidence 46678999998 899999999 999999999988899999999999999988874
No 36
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=98.11 E-value=4.6e-06 Score=65.20 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=46.7
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhC
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFN 67 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g 67 (104)
....+++..+ .|+|++||| ++++|.+.+..| +|+|.+|+.++.+ |+|+.++.++
T Consensus 277 ~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aG-A~~Vqv~ta~~~~Gp~~~~~i~~~ 334 (335)
T TIGR01036 277 IIRRLYAELQGRLPIIGVGGISSAQDALEKIRAG-ASLLQIYSGFIYWGPPLVKEIVKE 334 (335)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC-CcHHHhhHHHHHhCchHHHHHHhh
Confidence 3445666663 699999999 999999999999 8999999999995 9999999865
No 37
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.11 E-value=6.7e-06 Score=61.33 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=41.1
Q ss_pred HHHHHH-cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 15 LLMRKA-FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 15 ~~ir~~-~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
..|++. .++|||++||| +++++++.+..| +|+|.+||+ .||-+.+.+.
T Consensus 183 ~~I~~i~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR~--~~p~~~~~~~ 232 (233)
T cd02911 183 KKIRDISTELFIIGNNSVTTIESAKEMFSYG-ADMVSVARA--SLPENIEWLV 232 (233)
T ss_pred HHHHHhcCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcCC--CCchHHHHhh
Confidence 456665 57899999999 999999999988 999999999 9997766553
No 38
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.09 E-value=7.3e-06 Score=63.68 Aligned_cols=54 Identities=26% Similarity=0.374 Sum_probs=47.5
Q ss_pred HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574 14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA 68 (104)
Q Consensus 14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~ 68 (104)
...+++..++|||++||| |+++|.+.|..| +|+|.+|++++.+ |+++.++..+.
T Consensus 229 v~~v~~~~~ipIig~GGI~s~~Da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L 284 (325)
T cd04739 229 IAILSGRVKASLAASGGVHDAEDVVKYLLAG-ADVVMTTSALLRHGPDYIGTLLAGL 284 (325)
T ss_pred HHHHHcccCCCEEEECCCCCHHHHHHHHHcC-CCeeEEehhhhhcCchHHHHHHHHH
Confidence 345666667899999999 999999999988 8999999999995 99999998866
No 39
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=98.02 E-value=3.8e-06 Score=64.85 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=45.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH---HHhhCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR---RFEFNAP 69 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~---ri~~g~~ 69 (104)
+....+++.+++|||+||+| |++++++.++.-.+|.|.+||+++.||.+-. .+..|..
T Consensus 173 ~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~ 234 (309)
T PF01207_consen 173 EAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEP 234 (309)
T ss_dssp HHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT
T ss_pred HHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCC
Confidence 35567888889999999999 9999999998855999999999999999887 3444443
No 40
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.00 E-value=1.6e-05 Score=60.95 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=46.6
Q ss_pred HHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhCC
Q 046574 15 LLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFNA 68 (104)
Q Consensus 15 ~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g~ 68 (104)
..+++.++ .|||++||| +.+++.+.+..| +|+|.+|+.++. +|.++.++..+.
T Consensus 234 ~~~~~~~~~~ipIig~GGI~s~~da~e~l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L 290 (294)
T cd04741 234 RTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAG-ASAVQVGTALGKEGPKVFARIEKEL 290 (294)
T ss_pred HHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcC-CCceeEchhhhhcCchHHHHHHHHH
Confidence 55667774 799999999 999999999988 899999999995 999999987653
No 41
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=98.00 E-value=1.2e-05 Score=62.72 Aligned_cols=51 Identities=31% Similarity=0.256 Sum_probs=43.4
Q ss_pred HHH-HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh-----hCCcHHHHHhhCC
Q 046574 17 MRK-AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL-----ANPDLPRRFEFNA 68 (104)
Q Consensus 17 ir~-~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l-----anPdl~~ri~~g~ 68 (104)
+++ ..+.|||++||| +++++.++|..| +|+|++||++| ..|+.+.+..++.
T Consensus 248 ~~~~~~~ipVIasGGI~~~~di~kaLalG-Ad~V~igr~~L~~~~~~g~~~v~~~i~~~ 305 (333)
T TIGR02151 248 VRSDAPDAPIIASGGLRTGLDVAKAIALG-ADAVGMARPFLKAALDEGEEAVIEEIELI 305 (333)
T ss_pred HHhcCCCCeEEEECCCCCHHHHHHHHHhC-CCeehhhHHHHHHHHhcCHHHHHHHHHHH
Confidence 444 346799999999 999999999999 99999999999 7888777776654
No 42
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.95 E-value=1.5e-05 Score=61.04 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=48.9
Q ss_pred hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhC
Q 046574 12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFN 67 (104)
Q Consensus 12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g 67 (104)
+....+++.+ +.|||++||| +.+++.+.+..| +|+|.+||.++. .|+.+.++..+
T Consensus 240 ~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aG-A~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 240 RAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLG-ASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred HHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcC-CChheEceeecccCCcHHHHHhhh
Confidence 3456688888 6899999999 999999999988 899999999888 99999998765
No 43
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.93 E-value=2.1e-05 Score=58.94 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=39.9
Q ss_pred hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574 12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan 57 (104)
+....+++.++ +|||++||| |.++|.+.+..| +|.|.+||+++.+
T Consensus 180 ~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~G-Ad~VmvgR~~l~~ 226 (231)
T TIGR00736 180 DLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAG-ADFVSVARAILKG 226 (231)
T ss_pred HHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhC-CCeEEEcHhhccC
Confidence 35677888885 899999999 999999999977 8999999999865
No 44
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=97.82 E-value=5.7e-05 Score=55.17 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=44.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
..++.+++.++.||++.||| ++++++++++.| +|.|.+|+.++ +|+++.+..
T Consensus 163 ~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~G-adgV~iGsai~-~~~~~~~~~ 215 (221)
T PRK01130 163 ALLKELLKAVGCPVIAEGRINTPEQAKKALELG-AHAVVVGGAIT-RPEEITKWF 215 (221)
T ss_pred HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEchHhc-CCHHHHHHH
Confidence 46677888888999999999 899999999998 89999999854 677766543
No 45
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.78 E-value=7.5e-05 Score=54.55 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=48.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g 67 (104)
+..+.+++.++.||++.||| +.++++.++..| +|.|.+|..++.+|++..++.+.
T Consensus 64 ~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~G-a~~vilg~~~l~~~~~l~ei~~~ 119 (233)
T PRK00748 64 ELIEAIVKAVDIPVQVGGGIRSLETVEALLDAG-VSRVIIGTAAVKNPELVKEACKK 119 (233)
T ss_pred HHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcC-CCEEEECchHHhCHHHHHHHHHH
Confidence 35566778888899999999 999999999988 89999999999999999887764
No 46
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.74 E-value=8.7e-05 Score=55.31 Aligned_cols=54 Identities=22% Similarity=0.426 Sum_probs=48.3
Q ss_pred chHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 11 PHSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 11 ~~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
.+..+.+++.. +.|++..||| ++++|+++++.| +|.|.+|-.+..||++..++.
T Consensus 163 ~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG-AD~VVVGsai~~~p~~~~~~v 218 (219)
T cd02812 163 PEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAG-ADTIVVGNIVEEDPNAALETV 218 (219)
T ss_pred HHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEECchhhCCHHHHHHHh
Confidence 35677889988 8899999999 999999999888 899999999999999988764
No 47
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.74 E-value=0.00011 Score=54.03 Aligned_cols=54 Identities=28% Similarity=0.283 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g 67 (104)
..+.+++.++.||++.||+ +.++++.+++.| +|.|.+|+.++.||+++.++.+.
T Consensus 65 ~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G-~~~vilg~~~l~~~~~~~~~~~~ 119 (232)
T TIGR03572 65 LISNLAEECFMPLTVGGGIRSLEDAKKLLSLG-ADKVSINTAALENPDLIEEAARR 119 (232)
T ss_pred HHHHHHHhCCCCEEEECCCCCHHHHHHHHHcC-CCEEEEChhHhcCHHHHHHHHHH
Confidence 5567777788899999999 999999998887 89999999999999999998873
No 48
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.72 E-value=0.00016 Score=50.54 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=44.8
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
..++.+++..+.||++.|||+++.+.++++.| +|.|++|+.++.++|....++
T Consensus 140 ~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~G-a~~i~~g~~i~~~~~~~~~~~ 192 (196)
T cd00564 140 ELLREIAELVEIPVVAIGGITPENAAEVLAAG-ADGVAVISAITGADDPAAAAR 192 (196)
T ss_pred HHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhcCCCHHHHHH
Confidence 34555666667899999999999999999988 899999999999999776654
No 49
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.72 E-value=0.00014 Score=53.58 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=46.7
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+..+.+++.++.||+++||+ ++++++++...| +|.|.+|+.+..+|..+..++.
T Consensus 183 ~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~G-a~gv~vgsa~~~~~~~~~~~~~ 237 (241)
T PRK13585 183 EPVKELVDSVDIPVIASGGVTTLDDLRALKEAG-AAGVVVGSALYKGKFTLEEAIE 237 (241)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEEHHHhcCCcCHHHHHH
Confidence 45677888888999999999 899999987777 8999999999999998877653
No 50
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=97.68 E-value=0.0001 Score=53.79 Aligned_cols=48 Identities=29% Similarity=0.335 Sum_probs=41.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDL 60 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl 60 (104)
...+.+++.++.||+++||| ++++++++++.| +|.|.+|+.++...+.
T Consensus 167 ~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~G-adgV~vGsal~~~~~~ 215 (219)
T cd04729 167 ELLKELRKALGIPVIAEGRINSPEQAAKALELG-ADAVVVGSAITRPEHI 215 (219)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEchHHhChHhH
Confidence 46677888888999999999 899999999999 8999999996655544
No 51
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=97.67 E-value=5.3e-05 Score=60.39 Aligned_cols=54 Identities=13% Similarity=0.002 Sum_probs=47.2
Q ss_pred HHHHHHHc---CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhCC
Q 046574 14 LLLMRKAF---KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFNA 68 (104)
Q Consensus 14 ~~~ir~~~---~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g~ 68 (104)
...+++.+ ++|||++||| |.++|.+.+..| +|+|.+||+++. .|+.+.++..+.
T Consensus 242 v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L 300 (420)
T PRK08318 242 VAEIARDPETRGLPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGL 300 (420)
T ss_pred HHHHHhccccCCCCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHH
Confidence 34566666 5799999999 999999999988 899999999998 899999998875
No 52
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.64 E-value=0.00014 Score=54.14 Aligned_cols=55 Identities=25% Similarity=0.255 Sum_probs=48.7
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g 67 (104)
...+.+.+.+.+||.+.||| |.++++.++..| +|-|.+|-.++.||+++.++.+.
T Consensus 65 ~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~G-a~kvviGs~~l~~p~l~~~i~~~ 120 (241)
T PRK14024 65 ELLAEVVGKLDVKVELSGGIRDDESLEAALATG-CARVNIGTAALENPEWCARVIAE 120 (241)
T ss_pred HHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCC-CCEEEECchHhCCHHHHHHHHHH
Confidence 45566777778899999999 999999999998 89999999999999999998763
No 53
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.64 E-value=0.00022 Score=53.30 Aligned_cols=54 Identities=24% Similarity=0.366 Sum_probs=47.9
Q ss_pred chHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 11 PHSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 11 ~~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
.+..+.+++.+ +.||+..||| ++++++++++.| +|.|.+|-.+..||+++.+..
T Consensus 167 ~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG-AD~VVVGs~~~~dp~~~~~~v 222 (223)
T TIGR01768 167 PELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAG-ADTIVTGNVIEEDVDKALETI 222 (223)
T ss_pred HHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcC-CCEEEECcHHhhCHHHHHHhh
Confidence 45678899988 7899999999 999999999878 899999999999999987653
No 54
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00014 Score=55.02 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=47.9
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+..++..+.+.+|+-..||| +.++++++|..| +|-|++-.+.+.||+|+.++..
T Consensus 64 ~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aG-ADKVSINsaAv~~p~lI~~~a~ 118 (256)
T COG0107 64 DVVERVAEQVFIPLTVGGGIRSVEDARKLLRAG-ADKVSINSAAVKDPELITEAAD 118 (256)
T ss_pred HHHHHHHhhceeeeEecCCcCCHHHHHHHHHcC-CCeeeeChhHhcChHHHHHHHH
Confidence 34455666667899999999 999999999999 7999999999999999999887
No 55
>PRK07695 transcriptional regulator TenI; Provisional
Probab=97.64 E-value=0.00025 Score=51.11 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=44.3
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
...+.+++.++.||++.|||+++.+.++++.| +|.|++++.+...+|....++
T Consensus 139 ~~l~~~~~~~~ipvia~GGI~~~~~~~~~~~G-a~gvav~s~i~~~~~p~~~~~ 191 (201)
T PRK07695 139 EELSDIARALSIPVIAIGGITPENTRDVLAAG-VSGIAVMSGIFSSANPYSKAK 191 (201)
T ss_pred HHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcC-CCEEEEEHHHhcCCCHHHHHH
Confidence 34556666778899999999999999999988 899999999998777655554
No 56
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.61 E-value=0.00027 Score=52.02 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=48.9
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~ 68 (104)
.....+.+.++.|+++.||| +.++++.+++.| +|.|.+|..++.||+++.++.+.-
T Consensus 66 ~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~G-a~~v~iGs~~~~~~~~~~~i~~~~ 122 (241)
T PRK13585 66 EAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLG-VDRVILGTAAVENPEIVRELSEEF 122 (241)
T ss_pred HHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcC-CCEEEEChHHhhChHHHHHHHHHh
Confidence 35556667778899999999 999999999988 899999999999999999887753
No 57
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=97.60 E-value=0.00019 Score=54.63 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=47.7
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH-hhCCcHHHHHhhCC
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF-LANPDLPRRFEFNA 68 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~-lanPdl~~ri~~g~ 68 (104)
....+++.++ .|+|++||| |++++.+.+..| +|+|.++..+ ...|+.+.++.++.
T Consensus 233 ~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aG-A~~Vqv~Sal~~~Gp~~~~~i~~~L 291 (295)
T PF01180_consen 233 WVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAG-ASAVQVCSALIYRGPGVIRRINREL 291 (295)
T ss_dssp HHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHT-ESEEEESHHHHHHGTTHHHHHHHHH
T ss_pred HHHHHHhccccceEEEEeCCcCCHHHHHHHHHhC-CCHheechhhhhcCcHHHHHHHHHH
Confidence 4456888888 799999999 999999999999 8999999999 77999999998753
No 58
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00012 Score=58.08 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=43.2
Q ss_pred HHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574 13 SLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP 61 (104)
Q Consensus 13 ~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~ 61 (104)
....+|+.+. +|||+||+| +.++++.++....+|.|..||++|.||-+-
T Consensus 193 ~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F 243 (358)
T KOG2335|consen 193 AIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALF 243 (358)
T ss_pred HHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhh
Confidence 5567888887 899999999 999999999954489999999999999664
No 59
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=97.55 E-value=0.00021 Score=55.61 Aligned_cols=44 Identities=41% Similarity=0.477 Sum_probs=37.1
Q ss_pred HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574 13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan 57 (104)
.+..+++.. +.|||++||| +..++.++|..| +|+|++||+||.-
T Consensus 245 ~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lG-Ad~V~i~~~~L~~ 290 (326)
T cd02811 245 SLLEVRSALPDLPLIASGGIRNGLDIAKALALG-ADLVGMAGPFLKA 290 (326)
T ss_pred HHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhC-CCEEEEcHHHHHH
Confidence 334455566 6899999999 999999999999 9999999998753
No 60
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.53 E-value=0.00023 Score=52.96 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
..+.+.+..+.||++.||| +.+++++++..| +|-|.+|+..+ ||+|.+++.+
T Consensus 64 ~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G-~~~vivGtaa~-~~~~l~~~~~ 116 (228)
T PRK04128 64 VVKNIIRETGLKVQVGGGLRTYESIKDAYEIG-VENVIIGTKAF-DLEFLEKVTS 116 (228)
T ss_pred HHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCC-CCEEEECchhc-CHHHHHHHHH
Confidence 4456666677899999999 999999999988 79999999999 9999999875
No 61
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.52 E-value=0.00034 Score=52.55 Aligned_cols=54 Identities=24% Similarity=0.464 Sum_probs=46.6
Q ss_pred chHHHHHHHHcCC-eEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc-HHHHHh
Q 046574 11 PHSLLLMRKAFKG-TFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD-LPRRFE 65 (104)
Q Consensus 11 ~~~~~~ir~~~~~-pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd-l~~ri~ 65 (104)
.+..+.+++..+. ||++.||| +++++++++..| +|.|.+|-.+..||+ .++.++
T Consensus 172 ~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~G-AD~VVVGSai~~d~~~~~~~~~ 228 (232)
T PRK04169 172 PEMVKAVKKALDITPLIYGGGIRSPEQARELMAAG-ADTIVVGNIIEEDPKKTVKAIK 228 (232)
T ss_pred HHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhC-CCEEEEChHHhhCHHHHHHHHH
Confidence 3567788998888 99999999 999999999988 899999999999998 444443
No 62
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.48 E-value=0.00026 Score=55.73 Aligned_cols=44 Identities=36% Similarity=0.385 Sum_probs=37.8
Q ss_pred HHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574 13 SLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 13 ~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan 57 (104)
.+..+++.. ++|||++||| ++.++.++|..| +|+|++||+++..
T Consensus 251 ~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~G-Ad~v~ig~~~l~~ 296 (352)
T PRK05437 251 SLLEARSLLPDLPIIASGGIRNGLDIAKALALG-ADAVGMAGPFLKA 296 (352)
T ss_pred HHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcC-CCEEEEhHHHHHH
Confidence 334456663 7899999999 999999999999 9999999999976
No 63
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.47 E-value=0.00031 Score=51.87 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=40.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan 57 (104)
+.++.+++.++.|||++||+ ++++++++++.+.+|.|.+||++...
T Consensus 183 ~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~ 229 (243)
T cd04731 183 ELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG 229 (243)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcC
Confidence 45677888888999999999 99999999998569999999998764
No 64
>PLN02826 dihydroorotate dehydrogenase
Probab=97.47 E-value=0.00029 Score=56.71 Aligned_cols=55 Identities=31% Similarity=0.306 Sum_probs=47.5
Q ss_pred HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574 13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA 68 (104)
Q Consensus 13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~ 68 (104)
....+++.+ +.|||++||| +.++|-+.|..| +++|.++++++.+ |.++.++..+.
T Consensus 330 ~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AG-As~VQv~Ta~~~~Gp~~i~~I~~eL 388 (409)
T PLN02826 330 VLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAG-ASLVQLYTAFAYEGPALIPRIKAEL 388 (409)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhC-CCeeeecHHHHhcCHHHHHHHHHHH
Confidence 344566666 4699999999 999999999999 7999999999996 99999998765
No 65
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.47 E-value=0.00049 Score=49.05 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=43.1
Q ss_pred HHHHHHHHcC-----CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 13 SLLLMRKAFK-----GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 13 ~~~~ir~~~~-----~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
..+.+++..+ .|+++.|||+++.+.++++.| +|.|++|+++...+|....++
T Consensus 152 ~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~g-ad~iivgsai~~~~~~~~~~~ 208 (211)
T cd00429 152 KIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAG-ADVLVAGSALFGSDDYAEAIK 208 (211)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcC-CCEEEECHHHhCCCCHHHHHH
Confidence 3445666663 799999999999999999888 799999999999998766654
No 66
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.45 E-value=0.00062 Score=48.70 Aligned_cols=53 Identities=21% Similarity=0.196 Sum_probs=44.6
Q ss_pred hHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
...+.+++..+ .||++.|||+++.+.++++.| +|.|++|+.+..++|....++
T Consensus 149 ~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~G-a~gv~~gs~i~~~~d~~~~~~ 202 (212)
T PRK00043 149 EGLREIRAAVGDIPIVAIGGITPENAPEVLEAG-ADGVAVVSAITGAEDPEAAAR 202 (212)
T ss_pred HHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEeHHhhcCCCHHHHHH
Confidence 45666777777 899999999999999999998 799999999998888654443
No 67
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.45 E-value=0.00041 Score=50.58 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=41.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
+..+.+++.+++||+++||+ ++++++++++.| +|.|.+||.++.++-
T Consensus 180 ~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~G-a~gv~vg~~~~~~~~ 227 (234)
T cd04732 180 ELYKELAAATGIPVIASGGVSSLDDIKALKELG-VAGVIVGKALYEGKI 227 (234)
T ss_pred HHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCC-CCEEEEeHHHHcCCC
Confidence 45677888888999999999 999999999886 899999999999983
No 68
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.44 E-value=0.00057 Score=50.59 Aligned_cols=53 Identities=28% Similarity=0.352 Sum_probs=47.4
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
..+.+.+.+..||.+.||| +.++++.+++.| +|-|.+|...+.||++..++.+
T Consensus 64 ~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~G-a~~Vvigt~~~~~~~~l~~~~~ 117 (229)
T PF00977_consen 64 LIKEIAKETGIPIQVGGGIRSIEDAERLLDAG-ADRVVIGTEALEDPELLEELAE 117 (229)
T ss_dssp HHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT--SEEEESHHHHHCCHHHHHHHH
T ss_pred HHHHHHhcCCccEEEeCccCcHHHHHHHHHhC-CCEEEeChHHhhchhHHHHHHH
Confidence 4456777778899999999 999999999999 8999999999999999999887
No 69
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.44 E-value=0.0004 Score=50.71 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=40.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan 57 (104)
+..+.+++.++.|||++||+ ++++++++++.|.+|.|.+||.++..
T Consensus 180 ~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 180 EATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 35567778788999999999 99999999998889999999998754
No 70
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.43 E-value=0.00034 Score=52.41 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=40.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
..+..+++.+++|||++||+ +++++++++..|.+|.|.+|+.+-.
T Consensus 189 ~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 189 ELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 46677888889999999999 9999999999998999999998754
No 71
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=97.43 E-value=0.00025 Score=54.88 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=46.6
Q ss_pred HHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh-CCcHHHHHhhCC
Q 046574 15 LLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA-NPDLPRRFEFNA 68 (104)
Q Consensus 15 ~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la-nPdl~~ri~~g~ 68 (104)
..+++.+ +.|||++||| +.++|-+.+..| +|+|.++.+++. +|+++.++..+.
T Consensus 232 ~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L 288 (310)
T PRK02506 232 RAFYQRLNPSIQIIGTGGVKTGRDAFEHILCG-ASMVQVGTALHKEGPAVFERLTKEL 288 (310)
T ss_pred HHHHHhcCCCCCEEEECCCCCHHHHHHHHHcC-CCHHhhhHHHHHhChHHHHHHHHHH
Confidence 3455666 4699999999 999999999999 799999999998 799999998876
No 72
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.40 E-value=0.00043 Score=53.05 Aligned_cols=45 Identities=38% Similarity=0.382 Sum_probs=38.6
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
.+..+++.++ +|||++||| ++.++.+++.-| +|.|.+||+||...
T Consensus 216 ~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lG-Ad~V~ig~~~l~~~ 263 (299)
T cd02809 216 ALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALG-ADAVLIGRPFLYGL 263 (299)
T ss_pred HHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEcHHHHHHH
Confidence 4556767664 899999999 999999999988 89999999999764
No 73
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.40 E-value=0.00048 Score=51.34 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=47.9
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g 67 (104)
+..+.|.+.+..||.+.||| +.++++.++..| +|-|.+|...+.||++..++.+-
T Consensus 66 ~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~G-a~kvvigt~a~~~~~~l~~~~~~ 121 (234)
T PRK13587 66 DYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAG-INYCIVGTKGIQDTDWLKEMAHT 121 (234)
T ss_pred HHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCC-CCEEEECchHhcCHHHHHHHHHH
Confidence 34556666667899999999 999999999998 79999999999999999998763
No 74
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.36 E-value=0.00069 Score=48.28 Aligned_cols=52 Identities=25% Similarity=0.297 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
..+.+++..+.|+++.|||+++.+.++++.| +|.|++|+++...+|+...++
T Consensus 149 ~i~~~~~~~~~~i~~~GGI~~~~i~~~~~~G-ad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 149 DLKKVKKLLGVKVAVAGGITPDTLPEFKKAG-ADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred HHHHHHhhcCCCEEEECCcCHHHHHHHHhcC-CCEEEEeehhcCCCCHHHHHh
Confidence 4444554456799999999999999999988 799999999988888655543
No 75
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.36 E-value=0.0008 Score=48.06 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=41.3
Q ss_pred HHHHHHHcC-----CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 14 LLLMRKAFK-----GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 14 ~~~ir~~~~-----~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
.+.+++..+ .|+++.|||+++.+.++++.| +|.|++|+++...+|...+++
T Consensus 152 i~~i~~~~~~~~~~~~i~v~GGI~~env~~l~~~g-ad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 152 IREVRKMIDENGLSILIEVDGGVNDDNARELAEAG-ADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred HHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHcC-CCEEEEChHHhCCCCHHHHHH
Confidence 344555443 588999999999999999888 799999999999999766654
No 76
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00027 Score=55.18 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=50.0
Q ss_pred hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCC
Q 046574 12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNA 68 (104)
Q Consensus 12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~ 68 (104)
+....++++++ +|+|.+||| |.++|.+-|..| +++|.++.+++.+ |.++.++.++.
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aG-A~~vQv~Tal~~~Gp~i~~~I~~~l 288 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAG-ASAVQVGTALIYKGPGIVKEIIKGL 288 (310)
T ss_pred HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcC-CchheeeeeeeeeCchHHHHHHHHH
Confidence 35566777876 799999999 999999999999 7999999999999 99999998876
No 77
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.32 E-value=0.00053 Score=49.99 Aligned_cols=49 Identities=33% Similarity=0.325 Sum_probs=42.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP 61 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~ 61 (104)
.....+++.++.||++.||| +++++.+++..| +|.|.+|+.++..++.+
T Consensus 146 ~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~G-adgV~vgS~l~~~~e~~ 195 (236)
T cd04730 146 ALVPEVRDAVDIPVIAAGGIADGRGIAAALALG-ADGVQMGTRFLATEESG 195 (236)
T ss_pred HHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-CcEEEEchhhhcCcccC
Confidence 35667777888999999999 779999999887 89999999999888763
No 78
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.28 E-value=0.0008 Score=50.51 Aligned_cols=54 Identities=22% Similarity=0.081 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g 67 (104)
..+.+.+.+..||.+.||| |.++++.+++.| +|-|.+|...+.||+|..++.+.
T Consensus 65 ~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~G-a~~vvigT~a~~~p~~~~~~~~~ 119 (243)
T TIGR01919 65 MLEEVVKLLVVVEELSGGRRDDSSLRAALTGG-RARVNGGTAALENPWWAAAVIRY 119 (243)
T ss_pred HHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcC-CCEEEECchhhCCHHHHHHHHHH
Confidence 4455666677899999999 999999999988 79999999999999999998763
No 79
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.25 E-value=0.00075 Score=49.54 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=36.7
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.++.+++.+++|||++||+ +++++++++.+..+|.|++|+.|
T Consensus 187 ~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 187 ELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 46677888888999999999 99999996665559999999876
No 80
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=97.23 E-value=0.00086 Score=51.88 Aligned_cols=48 Identities=27% Similarity=0.289 Sum_probs=41.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDL 60 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl 60 (104)
..+..+++.+++|||++||| +++.+..++..| +|.|.+|..|+.-++-
T Consensus 151 ~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~G-A~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 151 ALVPQVVDAVSIPVIAAGGIADGRGMAAAFALG-AEAVQMGTRFLCAKEC 199 (307)
T ss_pred HHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcC-CCEeecchHHhccccc
Confidence 35567788888999999999 999999999988 8999999999976543
No 81
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.20 E-value=0.0011 Score=48.43 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=39.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan 57 (104)
+..+.+++..++||+++||+ ++++++++...| +|.|.+|+.++.+
T Consensus 179 ~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~G-adgv~ig~a~~~~ 224 (230)
T TIGR00007 179 ELTKELVKAVNVPVIASGGVSSIDDLIALKKLG-VYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEeHHHHcC
Confidence 35567777788999999999 999999998877 8999999999876
No 82
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.17 E-value=0.0015 Score=47.67 Aligned_cols=56 Identities=25% Similarity=0.291 Sum_probs=48.7
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~ 68 (104)
...+.+++.++.|+.+.||| +.++++.+++.| +|.|.+|-.++.||++...+....
T Consensus 62 ~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~G-a~~vvlgs~~l~d~~~~~~~~~~~ 118 (230)
T TIGR00007 62 PVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLG-VDRVIIGTAAVENPDLVKELLKEY 118 (230)
T ss_pred HHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEEChHHhhCHHHHHHHHHHh
Confidence 45667777788899999999 999999999988 799999999999999988877643
No 83
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.15 E-value=0.0018 Score=46.73 Aligned_cols=40 Identities=25% Similarity=0.467 Sum_probs=34.5
Q ss_pred EEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 25 FLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 25 vi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+.+.|||+++.+.++++.| +|.|++|+.++.++|....++
T Consensus 173 i~v~GGI~~~nv~~l~~~G-aD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 173 IEVDGGINADNIKECAEAG-ADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred EEEECCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHHHH
Confidence 5577999999999999887 799999999999999766554
No 84
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.15 E-value=0.0019 Score=50.08 Aligned_cols=50 Identities=20% Similarity=0.178 Sum_probs=42.4
Q ss_pred hHHHHHHHHcCCeEE--EeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574 12 HSLLLMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR 62 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi--~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ 62 (104)
+.++.+++..+.||+ +.||| ||+++..+++.| +|.|++|+.+...+|...
T Consensus 193 elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~G-AdgVaVGSaI~ks~dP~~ 245 (293)
T PRK04180 193 ELVKEVAELGRLPVVNFAAGGIATPADAALMMQLG-ADGVFVGSGIFKSGDPEK 245 (293)
T ss_pred HHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhC-CCEEEEcHHhhcCCCHHH
Confidence 466778887788998 99999 999999999988 899999999986665433
No 85
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.12 E-value=0.0016 Score=48.98 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=46.7
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+..+.+.+..+.||++.||+ +.+++++++..| ++.|.+|..++.+|+++..+..
T Consensus 64 ~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G-~~~vvigs~~~~~~~~~~~~~~ 118 (258)
T PRK01033 64 ELIENLASECFMPLCYGGGIKTLEQAKKIFSLG-VEKVSINTAALEDPDLITEAAE 118 (258)
T ss_pred HHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCC-CCEEEEChHHhcCHHHHHHHHH
Confidence 34555666667899999999 999999999887 8999999999999999998875
No 86
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.12 E-value=0.0024 Score=46.40 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=43.7
Q ss_pred hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+....+++.+ +.|+++.||| +++++.+++..| +|.|.+|+.++..+|....++
T Consensus 160 ~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G-a~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 160 NTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG-ADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC-CCEEEECHHHcCCCCHHHHHH
Confidence 3456677764 4699999999 899999999998 799999999998888665543
No 87
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.11 E-value=0.0033 Score=46.66 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=46.3
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+.+..+++...+|+++-|||+++.+.++++.| +|.|++-|.++.++|.....+
T Consensus 148 ~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~G-a~gVAvvsai~~a~d~~~a~~ 200 (211)
T COG0352 148 EGLREIRELVNIPVVAIGGINLENVPEVLEAG-ADGVAVVSAITSAADPAAAAK 200 (211)
T ss_pred HHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhC-CCeEEehhHhhcCCCHHHHHH
Confidence 45566777778999999999999999999999 799999999999988876554
No 88
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.10 E-value=0.0022 Score=49.52 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=40.7
Q ss_pred hHHHHHHHHcCCeEE--EeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 12 HSLLLMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi--~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
+.++.+++..+.||+ +.||| +++++..+++.| +|.|++|+.+...+|
T Consensus 184 elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~G-AdgVaVGSAI~~a~d 233 (283)
T cd04727 184 ELVKETAKLGRLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSEN 233 (283)
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcC-CCEEEEcHHhhcCCC
Confidence 466778888888997 99999 999999999988 899999999996444
No 89
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.05 E-value=0.00078 Score=50.71 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=44.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+..+.+++.+++|||++||+ +.+++++++++..+|.|.+|++|.-.-|-+.+++.
T Consensus 186 ~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~~~~~~~~~ 241 (258)
T PRK01033 186 ELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFKGVYKAVLIN 241 (258)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCccccccccc
Confidence 35567888888999999999 99999999944448999999999887555555543
No 90
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=97.04 E-value=0.0018 Score=50.38 Aligned_cols=47 Identities=36% Similarity=0.393 Sum_probs=38.2
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
.+...+++.+++|||++||| +...+..++.-| +|.|.+|..|++-++
T Consensus 180 ~L~~~v~~~~~iPViaAGGI~dg~~iaaal~lG-A~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 180 SLLPQVRDAVDIPVIAAGGIADGRGIAAALALG-ADGVQMGTRFLATEE 227 (330)
T ss_dssp HHHHHHHHH-SS-EEEESS--SHHHHHHHHHCT--SEEEESHHHHTSTT
T ss_pred eHHHHHhhhcCCcEEEecCcCCHHHHHHHHHcC-CCEeecCCeEEeccc
Confidence 35667888899999999999 999999999998 899999999998654
No 91
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.03 E-value=0.0033 Score=44.67 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=41.6
Q ss_pred hHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 12 HSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 12 ~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
...+.+.+.. +.||++.|||+++.+.+++..| +|.|++++.++...|-...+
T Consensus 141 ~~l~~~~~~~~~~pv~a~GGI~~~~~~~~~~~G-~~gva~~~~i~~~~dp~~~~ 193 (196)
T TIGR00693 141 ELLREIAATSIDIPIVAIGGITLENAAEVLAAG-ADGVAVVSAIMQAADPKAAA 193 (196)
T ss_pred HHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcC-CCEEEEhHHhhCCCCHHHHH
Confidence 3445555554 4799999999999999999888 79999999999887754443
No 92
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.00 E-value=0.0028 Score=49.07 Aligned_cols=47 Identities=28% Similarity=0.248 Sum_probs=40.6
Q ss_pred hHHHHHHHHcCCeEE--EeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 12 HSLLLMRKAFKGTFL--VAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi--~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
+.++.+++..+.||+ +.||| ||+++..+++.| +|.|++|+.+...+|
T Consensus 187 elLkei~~~~~iPVV~fAiGGI~TPedAa~~melG-AdGVaVGSaI~ks~d 236 (287)
T TIGR00343 187 ELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSSN 236 (287)
T ss_pred HHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcC-CCEEEEhHHhhcCCC
Confidence 566777777788998 99999 999999999998 899999999986433
No 93
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.00 E-value=0.0041 Score=46.12 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
..+.+++.+++||++-|||+++.+.++++.| +|.|++-+.++..+|.....+
T Consensus 155 ~l~~~~~~~~iPvvAIGGI~~~n~~~~~~~G-A~giAvisai~~~~dp~~a~~ 206 (221)
T PRK06512 155 LAEWWAEMIEIPCIVQAGSDLASAVEVAETG-AEFVALERAVFDAHDPPLAVA 206 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCHHHHHHHHHhC-CCEEEEhHHhhCCCCHHHHHH
Confidence 4455677788999999999999999999999 899999999998888765554
No 94
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.95 E-value=0.0033 Score=46.85 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=42.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHH--cCCCcEEecchHHhhCCcHHHHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIA--EGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~--~g~~DlVa~gR~~lanPdl~~ri 64 (104)
+..+.+++..+.|||++||+ +++++.++.. .-.+|.|.+||++...+-=...+
T Consensus 180 ~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~ 235 (241)
T PRK14024 180 ELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEA 235 (241)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHH
Confidence 35567778888999999999 9999998863 22389999999999887554443
No 95
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=96.95 E-value=0.0031 Score=48.00 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=46.9
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhC----CcHHHHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLAN----PDLPRRFEFN 67 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lan----Pdl~~ri~~g 67 (104)
+..+.|.+.+++||...|||+.++++++++.| +|-|.+|..++.| |++..++.+-
T Consensus 66 ~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aG-a~rVvIGS~av~~~~i~~~~~~~i~~~ 124 (253)
T TIGR02129 66 DAAKEALHAYPGGLQVGGGINDTNAQEWLDEG-ASHVIVTSWLFTKGKFDLKRLKEIVSL 124 (253)
T ss_pred HHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcC-CCEEEECcHHHhCCCCCHHHHHHHHHH
Confidence 34556667778899999999559999999999 8999999999998 7798888763
No 96
>PLN02334 ribulose-phosphate 3-epimerase
Probab=96.94 E-value=0.0041 Score=45.80 Aligned_cols=52 Identities=25% Similarity=0.398 Sum_probs=41.7
Q ss_pred HHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 13 SLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 13 ~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
.++.+++.. +.|+.+.|||+++.+.++++.| +|.|++|+++...+|....++
T Consensus 164 ~i~~~~~~~~~~~I~a~GGI~~e~i~~l~~aG-ad~vvvgsai~~~~d~~~~~~ 216 (229)
T PLN02334 164 KVRALRKKYPELDIEVDGGVGPSTIDKAAEAG-ANVIVAGSAVFGAPDYAEVIS 216 (229)
T ss_pred HHHHHHHhCCCCcEEEeCCCCHHHHHHHHHcC-CCEEEEChHHhCCCCHHHHHH
Confidence 334455553 3589999999999999999999 799999999998888655444
No 97
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.89 E-value=0.0029 Score=47.51 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
..+.|.+.+ .||.+.||| +.++++.+++.| +|-|.+|...+.||+|+.++..
T Consensus 65 ~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~G-a~rvvigT~a~~~p~~l~~~~~ 117 (241)
T PRK14114 65 VLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLG-YRRQIVSSKVLEDPSFLKFLKE 117 (241)
T ss_pred HHHHHHhhc-CcEEEecCCCCHHHHHHHHHCC-CCEEEECchhhCCHHHHHHHHH
Confidence 334455545 699999999 999999999998 7999999999999999999853
No 98
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=96.85 E-value=0.0027 Score=50.61 Aligned_cols=44 Identities=32% Similarity=0.361 Sum_probs=37.4
Q ss_pred hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
+.+..+++.++ +|||++||| +..++.++|.-| +|+|++||++|-
T Consensus 271 ~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalG-Ad~V~igR~~l~ 317 (367)
T TIGR02708 271 DSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASG-ADLVALGRPVIY 317 (367)
T ss_pred HHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 34556777674 699999999 999999999988 899999999874
No 99
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.83 E-value=0.0029 Score=49.71 Aligned_cols=48 Identities=29% Similarity=0.452 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP 61 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~ 61 (104)
....+++..++|||+.||| ++.++.++|..| +|+|.+|++|+...+-|
T Consensus 192 ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG~~~~~~~esp 240 (326)
T PRK05458 192 ALRWCAKAARKPIIADGGIRTHGDIAKSIRFG-ATMVMIGSLFAGHEESP 240 (326)
T ss_pred HHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEechhhcCCccCC
Confidence 3556777778899999999 999999999998 89999999999655543
No 100
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.81 E-value=0.0036 Score=46.71 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=44.0
Q ss_pred HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhC
Q 046574 14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFN 67 (104)
Q Consensus 14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g 67 (104)
.+.+.+....||.+.||| |.++++.+++.| +|-|.+|...+.||++..++.+.
T Consensus 65 i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~G-a~kvvigt~a~~~p~~~~~~~~~ 118 (232)
T PRK13586 65 IKEISKIGFDWIQVGGGIRDIEKAKRLLSLD-VNALVFSTIVFTNFNLFHDIVRE 118 (232)
T ss_pred HHHHHhhCCCCEEEeCCcCCHHHHHHHHHCC-CCEEEECchhhCCHHHHHHHHHH
Confidence 334444222499999999 999999999998 79999999999999999998764
No 101
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.81 E-value=0.0026 Score=47.82 Aligned_cols=44 Identities=30% Similarity=0.434 Sum_probs=35.9
Q ss_pred HHHHH-cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574 16 LMRKA-FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDL 60 (104)
Q Consensus 16 ~ir~~-~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl 60 (104)
.+++. .+.|||..||| |+++|+++++.| +|.|.+|-.+=.||++
T Consensus 175 ~~~~~~~~~~LivGGGIrs~e~A~~~~~aG-AD~IVvGn~iee~~~~ 220 (230)
T PF01884_consen 175 AAVKKLSDIPLIVGGGIRSPEQAREMAEAG-ADTIVVGNAIEEDPDL 220 (230)
T ss_dssp HHHHHSSSSEEEEESS--SHHHHHHHHCTT-SSEEEESCHHHHHH-H
T ss_pred HHHHhcCCccEEEeCCcCCHHHHHHHHHCC-CCEEEECCEEEEcchH
Confidence 34444 46799999999 999999999998 7999999999888873
No 102
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.81 E-value=0.0048 Score=49.43 Aligned_cols=50 Identities=32% Similarity=0.465 Sum_probs=43.3
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR 62 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ 62 (104)
..++.+++..+.||++.|||+.+.+.++++.| +|.|++|+.+...+|+..
T Consensus 152 ~~l~~l~~~~~iPI~a~GGI~~~n~~~~l~aG-Adgv~vGsaI~~~~d~~~ 201 (430)
T PRK07028 152 ELLKEVSEEVSIPIAVAGGLDAETAAKAVAAG-ADIVIVGGNIIKSADVTE 201 (430)
T ss_pred HHHHHHHhhCCCcEEEECCCCHHHHHHHHHcC-CCEEEEChHHcCCCCHHH
Confidence 35566777777899999999999999999999 799999999999888643
No 103
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.81 E-value=0.0036 Score=47.58 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=42.1
Q ss_pred chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh--CCcHH
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA--NPDLP 61 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la--nPdl~ 61 (104)
++..+.+++..++|||+.||| +++++.++++-| +|.|.++-+... ||...
T Consensus 164 ~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelG-AdgVlV~SAIt~a~dP~~m 216 (248)
T cd04728 164 PYNLRIIIERADVPVIVDAGIGTPSDAAQAMELG-ADAVLLNTAIAKAKDPVAM 216 (248)
T ss_pred HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEChHhcCCCCHHHH
Confidence 456677888878899999999 999999999999 899999988875 35543
No 104
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.77 E-value=0.0044 Score=44.73 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=38.8
Q ss_pred chHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574 11 PHSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 11 ~~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
....+.++..+ +.|+++.|||+++.+.+.++.| ++.|+++..++.
T Consensus 140 ~~~l~~~~~~~~~ipvvaiGGI~~~n~~~~l~aG-a~~vav~s~i~~ 185 (187)
T PRK07455 140 ADYIKSLQGPLGHIPLIPTGGVTLENAQAFIQAG-AIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHHHhhCCCCcEEEeCCCCHHHHHHHHHCC-CeEEEEehhccc
Confidence 45677788888 4899999999999999999998 799999987653
No 105
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.75 E-value=0.0041 Score=49.27 Aligned_cols=46 Identities=33% Similarity=0.333 Sum_probs=38.8
Q ss_pred hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
..+..+++.+ ++|||+.||| +..++-++|.-| +|+|.+||+++--.
T Consensus 264 ~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalG-A~~V~iGr~~l~~l 312 (351)
T cd04737 264 DSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASG-ADAVAVGRPVLYGL 312 (351)
T ss_pred HHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC-CCEEEECHHHHHHH
Confidence 3445677767 4799999999 999999999988 89999999999754
No 106
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.75 E-value=0.0054 Score=45.05 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=43.5
Q ss_pred hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+..+.+|+.. +.||+..||| +++.++.+++.| +|.|.+|..++.-+|+...+.
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~g-adGvlVGsa~l~~~~~~~~~~ 216 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELG-ADGVLLASGVVKAKDPEAALR 216 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCC-CCEEEEehHHhCCcCHHHHHH
Confidence 3445577654 4699999999 899999998777 899999999999999876654
No 107
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.73 E-value=0.0043 Score=45.86 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=37.2
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+..+.+++..+.|||++||+ ++++++++...| +|.|.+|+.+-
T Consensus 174 eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~G-a~~vivgsal~ 217 (221)
T TIGR00734 174 ELLTKTLELSEHPVMLGGGISGVEDLELLKEMG-VSAVLVATAVH 217 (221)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEEhHHhh
Confidence 45677888888899999999 999999988777 89999999874
No 108
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=96.72 E-value=0.0021 Score=51.44 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=43.0
Q ss_pred CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhhCCC
Q 046574 23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEFNAP 69 (104)
Q Consensus 23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~g~~ 69 (104)
.|+|++||| +.++|-+.|..| +++|.++..++.+ |+++.++..+..
T Consensus 271 ipIiGvGGI~s~~Da~e~i~aG-As~VQv~Ta~~~~Gp~vi~~i~~~L~ 318 (385)
T PLN02495 271 RSLSGIGGVETGGDAAEFILLG-ADTVQVCTGVMMHGYPLVKNLCAELQ 318 (385)
T ss_pred CcEEEECCCCCHHHHHHHHHhC-CCceeEeeeeeecCcHHHHHHHHHHH
Confidence 699999999 999999999999 7999999999999 999999988773
No 109
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.72 E-value=0.0037 Score=46.13 Aligned_cols=40 Identities=33% Similarity=0.513 Sum_probs=35.9
Q ss_pred chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
.+..+.+|+..+.|++..||| ++++++++++.| +|.|.+|
T Consensus 165 ~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVVG 205 (205)
T TIGR01769 165 PETISLVKKASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVTG 205 (205)
T ss_pred HHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEeC
Confidence 467788999999999999999 999999999888 8999876
No 110
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.64 E-value=0.011 Score=43.39 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=39.9
Q ss_pred chHHHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhC
Q 046574 11 PHSLLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 11 ~~~~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lan 57 (104)
.+..+.+++.+ +.|+++.|||+++.+.+.++.| +|.|++++.+...
T Consensus 138 ~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aG-a~~vav~s~l~~~ 185 (206)
T PRK09140 138 PAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAG-AAGFGLGSALYRP 185 (206)
T ss_pred HHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCC-CeEEEEehHhccc
Confidence 45667788877 3899999999999999999999 7999999999864
No 111
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=96.64 E-value=0.0056 Score=48.72 Aligned_cols=43 Identities=33% Similarity=0.333 Sum_probs=38.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+.+..+++.++.|||+.||| +..++-++|.-| +|+|++||++|
T Consensus 279 ~~L~ei~~~~~~~vi~dGGIr~g~Dv~KALaLG-A~aV~iGr~~l 322 (361)
T cd04736 279 EALAEIVAATYKPVLIDSGIRRGSDIVKALALG-ANAVLLGRATL 322 (361)
T ss_pred HHHHHHHHHhCCeEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHH
Confidence 35556777788899999999 999999999999 79999999999
No 112
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=96.63 E-value=0.0046 Score=42.36 Aligned_cols=37 Identities=38% Similarity=0.583 Sum_probs=31.4
Q ss_pred HHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecch
Q 046574 15 LLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGR 52 (104)
Q Consensus 15 ~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR 52 (104)
..+++..+.||+++||+ +++.+.++++.| +|.|.+||
T Consensus 163 ~~~~~~~~~pi~~~GGi~~~~~~~~~~~~G-ad~v~vgs 200 (200)
T cd04722 163 ILAKRGSKVPVIAGGGINDPEDAAEALALG-ADGVIVGS 200 (200)
T ss_pred HHHHhcCCCCEEEECCCCCHHHHHHHHHhC-CCEEEecC
Confidence 34555667899999999 779999999997 89999986
No 113
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.58 E-value=0.011 Score=45.09 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=40.0
Q ss_pred chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
++.++.+++..++|||+.||| +++++.++++-| +|.|.++-....
T Consensus 164 ~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelG-AdgVlV~SAItk 209 (250)
T PRK00208 164 PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELG-ADAVLLNTAIAV 209 (250)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEChHhhC
Confidence 456778888878899999999 999999999998 899999988876
No 114
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.57 E-value=0.0099 Score=47.07 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=43.2
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
+.+..+.+..+.|+++-|||+++.+.+++..| +|.|++++.++..+|-....
T Consensus 284 e~l~~~~~~~~iPv~AiGGI~~~ni~~l~~~G-a~gVAvisaI~~a~dp~~~~ 335 (347)
T PRK02615 284 EYLKYAAKEAPIPWFAIGGIDKSNIPEVLQAG-AKRVAVVRAIMGAEDPKQAT 335 (347)
T ss_pred HHHHHHHHhCCCCEEEECCCCHHHHHHHHHcC-CcEEEEeHHHhCCCCHHHHH
Confidence 45556666778899999999999999999998 89999999999877754433
No 115
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.53 E-value=0.0099 Score=42.62 Aligned_cols=51 Identities=25% Similarity=0.294 Sum_probs=40.0
Q ss_pred HHHHHHHHcCC-eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 13 SLLLMRKAFKG-TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 13 ~~~~ir~~~~~-pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
..+.+++.+.. ++++.||++++.+.++++.| +|.|++||.+...+|....+
T Consensus 148 ~i~~l~~~~~~~~i~v~GGI~~~n~~~~~~~G-a~~v~vGsai~~~~d~~~~~ 199 (206)
T TIGR03128 148 DLQTILKLVKEARVAVAGGINLDTIPDVIKLG-PDIVIVGGAITKAADPAEAA 199 (206)
T ss_pred HHHHHHHhcCCCcEEEECCcCHHHHHHHHHcC-CCEEEEeehhcCCCCHHHHH
Confidence 44566666665 45568999999999999988 79999999999888754443
No 116
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.51 E-value=0.013 Score=43.38 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=39.4
Q ss_pred chHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574 11 PHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 11 ~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
....+.++..++ .|++.+|||+++.+.+.++.| +|.|++|..+..
T Consensus 143 ~~~ik~l~~~~p~ip~~atGGI~~~N~~~~l~aG-a~~vavgs~l~~ 188 (213)
T PRK06552 143 PSFIKAIKGPLPQVNVMVTGGVNLDNVKDWFAAG-ADAVGIGGELNK 188 (213)
T ss_pred HHHHHHHhhhCCCCEEEEECCCCHHHHHHHHHCC-CcEEEEchHHhC
Confidence 456777888887 799999999999999999999 799999999863
No 117
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=96.48 E-value=0.0038 Score=49.09 Aligned_cols=47 Identities=32% Similarity=0.316 Sum_probs=41.4
Q ss_pred hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
.+...+++.++ +|||++||| +.+.+..++.-| +|.|-+|..|++..+
T Consensus 173 ~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalG-A~gVq~GT~Fl~t~E 221 (336)
T COG2070 173 ALVPEVVDAVDGIPVIAAGGIADGRGIAAALALG-ADGVQMGTRFLATKE 221 (336)
T ss_pred HHHHHHHHHhcCCCEEEecCccChHHHHHHHHhc-cHHHHhhhhhhcccc
Confidence 35677888999 799999999 999999999999 799999999997543
No 118
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.47 E-value=0.011 Score=44.59 Aligned_cols=45 Identities=24% Similarity=0.244 Sum_probs=39.1
Q ss_pred chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
.+..+.+|+..+.||++.||| +++++.++++.| +|.|.+|..++.
T Consensus 187 ~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~G-ADgvVvGSaiv~ 232 (256)
T TIGR00262 187 NELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAG-ADGVIVGSAIVK 232 (256)
T ss_pred HHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence 356778888888899999999 799999999888 799999999873
No 119
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.47 E-value=0.015 Score=42.77 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=42.8
Q ss_pred HHHHHHH-cCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 14 LLLMRKA-FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 14 ~~~ir~~-~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+..+.+. .+.||++-|||+++.+.+++..| ++.|++-+.++..+|....++
T Consensus 149 l~~~~~~~~~~PV~AiGGI~~~ni~~l~~~G-a~GiAvisai~~~~d~~~~~~ 200 (211)
T PRK03512 149 LARHVERLADYPTVAIGGISLERAPAVLATG-VGSIAVVSAITQAADWRAATA 200 (211)
T ss_pred HHHHHHhcCCCCEEEECCCCHHHHHHHHHcC-CCEEEEhhHhhCCCCHHHHHH
Confidence 3444444 46899999999999999999998 899999999999998776654
No 120
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=96.45 E-value=0.013 Score=43.51 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=40.8
Q ss_pred HHHHHHHHcC-----CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 13 SLLLMRKAFK-----GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 13 ~~~~ir~~~~-----~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
..+.+++..+ .|+.+-|||+++.+.++++.| +|.+++|+.+...+|....++
T Consensus 153 kI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aG-Ad~vVvGSaIf~~~d~~~~i~ 209 (220)
T PRK08883 153 KLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAG-ADMFVAGSAIFGQPDYKAVID 209 (220)
T ss_pred HHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcC-CCEEEEeHHHhCCCCHHHHHH
Confidence 3445555553 578788999999999999999 799999999988888655443
No 121
>PLN02535 glycolate oxidase
Probab=96.43 E-value=0.0079 Score=47.91 Aligned_cols=46 Identities=30% Similarity=0.305 Sum_probs=38.5
Q ss_pred HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
.+..+++.+ ++|||+.||| +..++-++|.-| +|+|.+||++|..+.
T Consensus 267 ~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalG-A~aV~vGr~~l~~l~ 315 (364)
T PLN02535 267 VLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALG-AQAVLVGRPVIYGLA 315 (364)
T ss_pred HHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcC-CCEEEECHHHHhhhh
Confidence 444566655 4799999999 999999999999 799999999998654
No 122
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=96.36 E-value=0.0053 Score=48.83 Aligned_cols=44 Identities=39% Similarity=0.374 Sum_probs=38.9
Q ss_pred hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
+.+..+++.++ ++||+.||| +..++-++|.-| +|+|++|||+|.
T Consensus 261 ~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALG-A~~v~igrp~L~ 307 (360)
T COG1304 261 DSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALG-ADAVGIGRPFLY 307 (360)
T ss_pred HHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhC-CchhhhhHHHHH
Confidence 46677888887 589999999 999999999999 799999999984
No 123
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=96.36 E-value=0.009 Score=47.68 Aligned_cols=34 Identities=35% Similarity=0.443 Sum_probs=31.9
Q ss_pred CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
++|||++||| ++.++.+++.-| +|+|.+||++|.
T Consensus 285 ~i~viasGGI~~g~Dv~kalaLG-Ad~V~ig~~~l~ 319 (392)
T cd02808 285 RVSLIASGGLRTGADVAKALALG-ADAVGIGTAALI 319 (392)
T ss_pred CCeEEEECCCCCHHHHHHHHHcC-CCeeeechHHHH
Confidence 4799999999 999999999999 899999999995
No 124
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.33 E-value=0.009 Score=45.28 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP 69 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~ 69 (104)
..+.|.+.+++||=+.||| |.+.++.+++.| ++-|.+|...+.||+|+.++.+--+
T Consensus 66 ~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G-~~rViiGt~av~~p~~v~~~~~~~g 122 (241)
T COG0106 66 AIKEILEATDVPVQVGGGIRSLEDVEALLDAG-VARVIIGTAAVKNPDLVKELCEEYG 122 (241)
T ss_pred HHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCC-CCEEEEecceecCHHHHHHHHHHcC
Confidence 4566777788899999999 999999999988 7999999999999999999987543
No 125
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=96.31 E-value=0.018 Score=42.67 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=39.6
Q ss_pred HHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 14 LLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 14 ~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
++.+++..+ ..+.+.|||+++.+..+++.| +|.+.+||++...+|....+
T Consensus 164 i~~~~~~~~~~~I~VdGGI~~~ti~~~~~aG-ad~iVvGsaI~~a~d~~~~~ 214 (228)
T PTZ00170 164 VRELRKRYPHLNIQVDGGINLETIDIAADAG-ANVIVAGSSIFKAKDRKQAI 214 (228)
T ss_pred HHHHHHhcccCeEEECCCCCHHHHHHHHHcC-CCEEEEchHHhCCCCHHHHH
Confidence 344556554 367788999999999999999 79999999998888865444
No 126
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=96.31 E-value=0.011 Score=46.75 Aligned_cols=44 Identities=39% Similarity=0.406 Sum_probs=36.4
Q ss_pred hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
+.+..+++.++ .|||+.||| +..++-++|.-| +|+|++||+++.
T Consensus 268 ~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLG-A~~v~igr~~l~ 314 (356)
T PF01070_consen 268 DALPEIRAAVGDDIPIIADGGIRRGLDVAKALALG-ADAVGIGRPFLY 314 (356)
T ss_dssp HHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT--SEEEESHHHHH
T ss_pred cccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcC-CCeEEEccHHHH
Confidence 45566788775 699999999 999999999999 799999999984
No 127
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.30 E-value=0.013 Score=41.93 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=37.8
Q ss_pred chHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 11 PHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 11 ~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.+..+.+++.+. .|+++.|||+++.+.+.++.| +|.|+++..+.
T Consensus 131 ~~~~~~l~~~~~~~p~~a~GGI~~~n~~~~~~~G-~~~v~v~s~i~ 175 (190)
T cd00452 131 PAYIKALKGPFPQVRFMPTGGVSLDNAAEWLAAG-VVAVGGGSLLP 175 (190)
T ss_pred HHHHHHHHhhCCCCeEEEeCCCCHHHHHHHHHCC-CEEEEEchhcc
Confidence 456666777764 799999999999999999999 89999998876
No 128
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.27 E-value=0.014 Score=42.87 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
+.+.+.+. +.|||+=|+| +|+++.++++.| ++.|.+|- .|..|.+..++
T Consensus 136 lv~~l~~~-~~pvIaEGri~tpe~a~~al~~G-A~aVVVGs-AITrP~~It~~ 185 (192)
T PF04131_consen 136 LVRELVQA-DVPVIAEGRIHTPEQAAKALELG-AHAVVVGS-AITRPQEITKR 185 (192)
T ss_dssp HHHHHHHT-TSEEEEESS--SHHHHHHHHHTT--SEEEE-H-HHH-HHHHHHH
T ss_pred HHHHHHhC-CCcEeecCCCCCHHHHHHHHhcC-CeEEEECc-ccCCHHHHHHH
Confidence 44555554 6799999999 999999999999 79999995 56778776543
No 129
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.25 E-value=0.012 Score=43.64 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~ 68 (104)
..+.+.+.+..||.+.||+ +.++++.++..| ++-|.+|...+.| +|..++.+.-
T Consensus 69 ~i~~i~~~~~~~v~vgGGir~~edv~~~l~~G-a~~viigt~~~~~-~~~~~~~~~~ 123 (233)
T cd04723 69 AIRELAAAWPLGLWVDGGIRSLENAQEWLKRG-ASRVIVGTETLPS-DDDEDRLAAL 123 (233)
T ss_pred HHHHHHHhCCCCEEEecCcCCHHHHHHHHHcC-CCeEEEcceeccc-hHHHHHHHhc
Confidence 4555666667899999999 999999999998 7999999999999 9998887754
No 130
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=96.25 E-value=0.012 Score=47.26 Aligned_cols=43 Identities=33% Similarity=0.316 Sum_probs=37.0
Q ss_pred hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
..+..+++.++ +|||+.||| +..++-++|.-| +|+|++||+||
T Consensus 296 ~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLG-A~~v~iGr~~l 341 (383)
T cd03332 296 DALPEIVEAVGDRLTVLFDSGVRTGADIMKALALG-AKAVLIGRPYA 341 (383)
T ss_pred HHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHH
Confidence 35556777664 699999999 999999999999 79999999999
No 131
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.24 E-value=0.016 Score=44.38 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhC----CcHHHHHhhC
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLAN----PDLPRRFEFN 67 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lan----Pdl~~ri~~g 67 (104)
..+.|++ +++||=..|||..++++.+++.| +|-|.+|..++.| |+|+.++...
T Consensus 75 ~i~~i~~-~~~~vqvGGGIR~e~i~~~l~~G-a~rViigT~Av~~~~~~p~~v~~~~~~ 131 (262)
T PLN02446 75 ALEALRA-YPGGLQVGGGVNSENAMSYLDAG-ASHVIVTSYVFRDGQIDLERLKDLVRL 131 (262)
T ss_pred HHHHHHh-CCCCEEEeCCccHHHHHHHHHcC-CCEEEEchHHHhCCCCCHHHHHHHHHH
Confidence 4455666 77899999999559999999999 8999999999999 9999999773
No 132
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=96.23 E-value=0.022 Score=43.12 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=42.2
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
....+.+.+. .++|+-||| +++++..+++.| +|.|.+|+.++..+|....++
T Consensus 200 ~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~G-ad~vlVGsaI~~~~dp~~~~~ 254 (260)
T PRK00278 200 TTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAG-ADAVLVGESLMRADDPGAALR 254 (260)
T ss_pred HHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcC-CCEEEECHHHcCCCCHHHHHH
Confidence 3445556553 489999999 999999999998 799999999999998765544
No 133
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.21 E-value=0.01 Score=46.31 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=36.4
Q ss_pred cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574 21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP 61 (104)
Q Consensus 21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~ 61 (104)
.++|||+.||| ++.++.+++..| +|.|.+|+.|+...+-+
T Consensus 196 ~~vpVIA~GGI~~~~di~kAla~G-A~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 196 YGVPVIADGGIRTSGDIVKALAAG-ADAVMLGSLLAGTDESP 236 (325)
T ss_pred cCCcEEecCCCCCHHHHHHHHHcC-CCEEEecchhcccccCC
Confidence 36899999999 999999999988 89999999999988766
No 134
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.18 E-value=0.014 Score=43.42 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=38.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan 57 (104)
+....+++.++.|||++||+ +++++.+++....+|.|.+|+.+...
T Consensus 187 ~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 187 ELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 34567777788999999999 99999999976338999999988754
No 135
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=96.18 E-value=0.018 Score=45.44 Aligned_cols=36 Identities=36% Similarity=0.338 Sum_probs=33.8
Q ss_pred CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
+|||+.||| +..++-++|.-| +|+|++||++|..+.
T Consensus 272 ~~vi~~GGIr~G~Dv~kalaLG-A~aV~iG~~~l~~l~ 308 (344)
T cd02922 272 IEVYVDGGVRRGTDVLKALCLG-AKAVGLGRPFLYALS 308 (344)
T ss_pred ceEEEeCCCCCHHHHHHHHHcC-CCEEEECHHHHHHHh
Confidence 699999999 999999999999 799999999999886
No 136
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.16 E-value=0.014 Score=47.41 Aligned_cols=37 Identities=30% Similarity=0.321 Sum_probs=34.0
Q ss_pred CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
++|||++||| |++.+..++.-| +|.|.+|..|++.++
T Consensus 219 ~ipViAAGGI~tg~~vaAA~alG-Ad~V~~GT~flat~E 256 (418)
T cd04742 219 PIRVGAAGGIGTPEAAAAAFALG-ADFIVTGSINQCTVE 256 (418)
T ss_pred CceEEEECCCCCHHHHHHHHHcC-CcEEeeccHHHhCcc
Confidence 4799999999 999999999999 799999999999654
No 137
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.12 E-value=0.017 Score=42.85 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=38.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan 57 (104)
...+.+.+..++||++.||+ +++++++++..| ++.|.+|+.+-..
T Consensus 179 ~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G-~~~vivGsal~~g 224 (233)
T cd04723 179 ELLERLAARADIPVIAAGGVRSVEDLELLKKLG-ASGALVASALHDG 224 (233)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEehHHHcC
Confidence 35566777778899999999 999999999988 8999999988654
No 138
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=96.11 E-value=0.015 Score=47.47 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=33.9
Q ss_pred CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
++|||++||| |++.+..++.-| +|.|.+|.-|++.++
T Consensus 224 ~VpViAAGGI~t~~~vaAAlaLG-AdgV~~GT~flat~E 261 (444)
T TIGR02814 224 PIRVGAAGGIGTPEAAAAAFMLG-ADFIVTGSVNQCTVE 261 (444)
T ss_pred CceEEEeCCCCCHHHHHHHHHcC-CcEEEeccHHHhCcc
Confidence 5789999999 999999999999 799999999999654
No 139
>PLN02979 glycolate oxidase
Probab=96.00 E-value=0.019 Score=45.91 Aligned_cols=43 Identities=30% Similarity=0.272 Sum_probs=36.2
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
.+..+++.++ ++||+.||| +..++-++|.-| +|+|++||++|.
T Consensus 267 ~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALG-AdaV~iGrp~L~ 312 (366)
T PLN02979 267 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHHH
Confidence 4445666664 699999999 899999999999 799999999993
No 140
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.96 E-value=0.018 Score=45.21 Aligned_cols=48 Identities=29% Similarity=0.456 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP 61 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~ 61 (104)
....+++.++.|||+.||| +..++.++|.-| +|+|.+||+|...-+-|
T Consensus 189 ai~ev~~a~~~pVIadGGIr~~~Di~KALa~G-Ad~Vmig~~~ag~~Esp 237 (321)
T TIGR01306 189 ALRWCAKAARKPIIADGGIRTHGDIAKSIRFG-ASMVMIGSLFAGHEESP 237 (321)
T ss_pred HHHHHHHhcCCeEEEECCcCcHHHHHHHHHcC-CCEEeechhhcCcccCC
Confidence 3445667778899999999 888888999988 89999999997644333
No 141
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.95 E-value=0.023 Score=42.38 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
..+.+.+..+.|||+.||+ ++++++++++.| +|.|.+|+.+..
T Consensus 183 li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G-~~~vivG~a~~~ 226 (234)
T PRK13587 183 LTGQLVKATTIPVIASGGIRHQQDIQRLASLN-VHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEEhHHHHh
Confidence 4567777778899999999 999999999877 899999998875
No 142
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=95.94 E-value=0.021 Score=42.19 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=36.7
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+..+.+++.++.|||++||+ +.++..++...| +|.|.+|+.|-
T Consensus 181 ~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G-~~gvivg~al~ 224 (229)
T PF00977_consen 181 ELLKQLAEAVNIPVIASGGVRSLEDLRELKKAG-IDGVIVGSALH 224 (229)
T ss_dssp HHHHHHHHHHSSEEEEESS--SHHHHHHHHHTT-ECEEEESHHHH
T ss_pred HHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCC-CcEEEEehHhh
Confidence 45677888889999999999 999999999888 69999999884
No 143
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=95.89 E-value=0.019 Score=46.10 Aligned_cols=43 Identities=35% Similarity=0.408 Sum_probs=36.1
Q ss_pred HHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 13 SLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 13 ~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
.+..+++.+ +.|||+.||| +..++-++|.-| +|+|++||+|+.
T Consensus 289 ~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLG-A~~V~iGr~~l~ 334 (381)
T PRK11197 289 ALPAIADAVKGDITILADSGIRNGLDVVRMIALG-ADTVLLGRAFVY 334 (381)
T ss_pred HHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcC-cCceeEhHHHHH
Confidence 444566655 3699999999 999999999999 799999999984
No 144
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=95.88 E-value=0.022 Score=45.44 Aligned_cols=42 Identities=31% Similarity=0.297 Sum_probs=35.5
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.+..+++.+. .|||+.||| +..++-++|.-| +|+|++||++|
T Consensus 268 ~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALG-A~aV~iGr~~l 312 (367)
T PLN02493 268 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVV 312 (367)
T ss_pred HHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC-CCEEEEcHHHH
Confidence 3444666654 699999999 999999999999 79999999999
No 145
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.78 E-value=0.044 Score=40.12 Aligned_cols=53 Identities=23% Similarity=0.253 Sum_probs=40.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC---CH----HHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY---DR----EDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi---~~----~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+..+.+.+....||++.||+ |+ +.+.++++.| ++.|++||.++..||-...++
T Consensus 169 ~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~G-a~gv~vg~~i~~~~dp~~~~~ 228 (235)
T cd00958 169 ESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAG-AAGVAVGRNIFQRPDPVAMLR 228 (235)
T ss_pred HHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcC-CcEEEechhhhcCCCHHHHHH
Confidence 34556666667899998997 44 4488889888 799999999999998655443
No 146
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=95.77 E-value=0.043 Score=41.12 Aligned_cols=52 Identities=25% Similarity=0.198 Sum_probs=39.9
Q ss_pred hHHHHHHHHcCCeEEEeCCCC-------HHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGYD-------REDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~-------~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
+.++.+.+...+||.+.|||+ .+.+.++++.| ++.|++||.++..+|-...+
T Consensus 182 ~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aG-a~Gia~g~~i~~~~dp~~~~ 240 (258)
T TIGR01949 182 DSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAG-AAGVAVGRNIFQHDDPVGIT 240 (258)
T ss_pred HHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcC-CcEEehhhHhhcCCCHHHHH
Confidence 344455555568999999995 66677777888 68999999999999954443
No 147
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=95.71 E-value=0.03 Score=46.66 Aligned_cols=53 Identities=19% Similarity=0.127 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCeEEEeCCC-CH-----------HHHHHHHHcCCCcEEecchHHhhCC------------cHHHHHhh
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DR-----------EDGNKAIAEGRADLVVYGRFFLANP------------DLPRRFEF 66 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~-----------~~ae~~l~~g~~DlVa~gR~~lanP------------dl~~ri~~ 66 (104)
..+.+.+.+.+||-+.||| +. ++|++++..| +|-|+++...+.|| +|+..+..
T Consensus 305 ~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G-adkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~ 381 (538)
T PLN02617 305 VLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG-ADKISIGSDAVYAAEEYIASGVKTGKTSIEQISR 381 (538)
T ss_pred HHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcC-CCEEEEChHHHhChhhhhccccccCHHHHHHHHH
Confidence 4455666667899999999 75 7799999999 89999999999975 99988876
No 148
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=95.68 E-value=0.041 Score=44.98 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=43.1
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCc---EEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRAD---LVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~D---lVa~gR~~lanPdl~~ri~ 65 (104)
+.++.+.+..+.||++.|||+++.+.++++.| +| .|++++.++..+|....++
T Consensus 434 ~~~~~~~~~~~~Pv~aiGGI~~~~~~~~~~~G-~~~~~gvav~~~i~~~~d~~~~~~ 489 (502)
T PLN02898 434 DGLREVCEASKLPVVAIGGISASNAASVMESG-APNLKGVAVVSALFDQEDVLKATR 489 (502)
T ss_pred HHHHHHHHcCCCCEEEECCCCHHHHHHHHHcC-CCcCceEEEEeHHhcCCCHHHHHH
Confidence 34455556667899999999999999999987 56 9999999998888665554
No 149
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.67 E-value=0.024 Score=45.25 Aligned_cols=36 Identities=36% Similarity=0.395 Sum_probs=32.9
Q ss_pred CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
+|||+.||| +..++.++|.-| +|.|.+|++|+.--+
T Consensus 256 vpVIAdGGI~tg~di~kAlAlG-AdaV~iGt~~a~a~E 292 (369)
T TIGR01304 256 VHVIADGGIETSGDLVKAIACG-ADAVVLGSPLARAAE 292 (369)
T ss_pred ceEEEeCCCCCHHHHHHHHHcC-CCEeeeHHHHHhhhc
Confidence 699999999 999999999998 799999999997544
No 150
>PLN02591 tryptophan synthase
Probab=95.62 E-value=0.044 Score=41.51 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=38.9
Q ss_pred chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
.+..+.+|+..+.||++.-|| ++++++++++.| +|.|.+|..++.
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~G-ADGvIVGSalVk 223 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWG-ADGVIVGSAMVK 223 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcC-CCEEEECHHHHH
Confidence 356778999888899999999 799999998877 799999999873
No 151
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=95.57 E-value=0.032 Score=42.49 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=38.4
Q ss_pred chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.+..+.+|+..+.|+.+-+|| ++++++++.+.| +|.|.+|..++
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~G-ADGvVVGSalv 235 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWN-INGIVIGSACV 235 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcC-CCEEEECHHHH
Confidence 356677888888899999999 799999998877 79999999985
No 152
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.49 E-value=0.033 Score=41.13 Aligned_cols=42 Identities=24% Similarity=0.075 Sum_probs=37.5
Q ss_pred CeEEEeCCC-CHHHHHHHHH--cCCCcEEecchHHhhCCcHHHHHh
Q 046574 23 GTFLVAGGY-DREDGNKAIA--EGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 23 ~pvi~~Ggi-~~~~ae~~l~--~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
.||.+.||| |.+++++++. ++ +|-|.+|...+.||+|..++.
T Consensus 78 ~~v~vgGGirs~e~~~~~~~~l~~-a~rvvigT~a~~~p~~l~~~~ 122 (221)
T TIGR00734 78 VELIADCGVRSPEDLETLPFTLEF-ASRVVVATETLDITELLRECY 122 (221)
T ss_pred CcEEEcCccCCHHHHHHHHhhhcc-ceEEeecChhhCCHHHHHHhh
Confidence 489999999 9999999865 46 999999999999999998875
No 153
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=95.46 E-value=0.038 Score=41.81 Aligned_cols=55 Identities=22% Similarity=0.399 Sum_probs=43.4
Q ss_pred chHHHHHHHHcCC-eEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 11 PHSLLLMRKAFKG-TFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 11 ~~~~~~ir~~~~~-pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+...+.+++..+. +||..||| ++|+|.++..+| +|.|..|--.=.+||-..++..
T Consensus 179 Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~ag-AD~IVtG~iiee~~~~~~~~v~ 235 (240)
T COG1646 179 PVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAG-ADTIVTGTIIEEDPDKALETVE 235 (240)
T ss_pred CcCHHHHHHhhccceEEEcCCcCCHHHHHHHHHcC-CCEEEECceeecCHHHHHHHHH
Confidence 3445566776654 99999999 999999999888 7999999888888866555443
No 154
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=95.42 E-value=0.025 Score=40.75 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=37.6
Q ss_pred HHHHH-cCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574 16 LMRKA-FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60 (104)
Q Consensus 16 ~ir~~-~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl 60 (104)
.+++. .+.|+++.|||+++.+.++++.+..+.|.+...+...|-.
T Consensus 145 ~l~~~~~~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 145 LLRGLASRKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred HhhccccCCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 45444 3679999999999999999999888999999998877653
No 155
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.41 E-value=0.022 Score=46.01 Aligned_cols=44 Identities=34% Similarity=0.438 Sum_probs=37.8
Q ss_pred HHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574 19 KAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63 (104)
Q Consensus 19 ~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r 63 (104)
+.++.|||+-||| ++.++.++|.-| +|.|.+|+.|....+-|-.
T Consensus 253 ~~~~vpVIAdGGI~~~~Di~KALalG-A~aVmvGs~~agt~Espg~ 297 (404)
T PRK06843 253 KNTNICIIADGGIRFSGDVVKAIAAG-ADSVMIGNLFAGTKESPSE 297 (404)
T ss_pred hhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEcceeeeeecCCCc
Confidence 3457899999999 999999999999 7999999999987665544
No 156
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=95.20 E-value=0.074 Score=45.79 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=44.0
Q ss_pred hHHHHHHHHcC---CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 12 HSLLLMRKAFK---GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 12 ~~~~~ir~~~~---~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
+.++.+++... +||++-|||+++.+.++++.| +|.|++.+.++..+|....+
T Consensus 153 ~~l~~~~~~~~~~~iPv~AiGGI~~~~~~~~~~~G-a~giAvisai~~a~d~~~a~ 207 (755)
T PRK09517 153 DGIAEIAAVAQDHGIASVAIGGVGLRNAAELAATG-IDGLCVVSAIMAAANPAAAA 207 (755)
T ss_pred HHHHHHHHhcCcCCCCEEEECCCCHHHHHHHHHcC-CCEEEEehHhhCCCCHHHHH
Confidence 35566777777 899999999999999999998 89999999999888855433
No 157
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=95.18 E-value=0.081 Score=42.60 Aligned_cols=52 Identities=35% Similarity=0.424 Sum_probs=40.7
Q ss_pred HHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 13 SLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 13 ~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
..+.+|+.. +.++.+.|||+++.+.++++.| +|.+.+||++...+|....++
T Consensus 320 kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aG-ADivVVGsaIf~a~Dp~~aak 372 (391)
T PRK13307 320 NIKEIKKAGGKILVAVAGGVRVENVEEALKAG-ADILVVGRAITKSKDVRRAAE 372 (391)
T ss_pred HHHHHHHhCCCCcEEEECCcCHHHHHHHHHcC-CCEEEEeHHHhCCCCHHHHHH
Confidence 344566653 3589999999999999999988 799999999888788644433
No 158
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=95.12 E-value=0.059 Score=41.36 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=44.1
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR 62 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ 62 (104)
..++.|++..++|||+.+|| +++++..+++-| +|.|.+..+...-+|.+.
T Consensus 179 ~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElG-aDgVL~nSaIakA~dP~~ 229 (267)
T CHL00162 179 LNLQIIIENAKIPVIIDAGIGTPSEASQAMELG-ASGVLLNTAVAQAKNPEQ 229 (267)
T ss_pred HHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcC-CCEEeecceeecCCCHHH
Confidence 57788999888999999999 999999999999 899999888887777644
No 159
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.06 E-value=0.12 Score=42.23 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=38.2
Q ss_pred CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+.||++-|||+++.+.++++.| ++.|++-|.+...+|....++
T Consensus 364 ~iPVVAIGGI~~~Ni~~vl~aG-a~GVAVVSAI~~A~DP~aa~~ 406 (437)
T PRK12290 364 GFPTVAIGGIDQSNAEQVWQCG-VSSLAVVRAITLAEDPQLVIE 406 (437)
T ss_pred CCCEEEECCcCHHHHHHHHHcC-CCEEEEehHhhcCCCHHHHHH
Confidence 5799999999999999999999 899999999998888665544
No 160
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.06 E-value=0.052 Score=44.89 Aligned_cols=56 Identities=18% Similarity=0.312 Sum_probs=43.3
Q ss_pred HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH--hhCCCC
Q 046574 14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF--EFNAPL 70 (104)
Q Consensus 14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri--~~g~~l 70 (104)
...+.+.+++|||+.||| ++.++.++|..| +|.|.+|..|..--+-|-.. ++|+.+
T Consensus 343 ~~~~~~~~~vpVIadGGI~~~~di~kAla~G-A~~V~vGs~~~~t~Esp~~~~~~~g~~~ 401 (505)
T PLN02274 343 VASIAAQHGVPVIADGGISNSGHIVKALTLG-ASTVMMGSFLAGTTEAPGEYFYQDGVRV 401 (505)
T ss_pred HHHHHHhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEchhhcccccCCcceeeeCCeEE
Confidence 344555667899999999 999999999999 79999999998876555332 345544
No 161
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.93 E-value=0.069 Score=40.56 Aligned_cols=43 Identities=19% Similarity=0.124 Sum_probs=37.8
Q ss_pred chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.+..+.+|+..+.||++.+|| +++++.++++ . +|.|.+|..++
T Consensus 189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~-~-ADGviVGSaiv 232 (258)
T PRK13111 189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAA-V-ADGVIVGSALV 232 (258)
T ss_pred HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH-h-CCEEEEcHHHH
Confidence 357788999888999999999 9999999885 4 89999999987
No 162
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.90 E-value=0.065 Score=39.54 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=38.5
Q ss_pred chHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574 11 PHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 11 ~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
+...+.++.-+. .++|.+||++++.+.+.++.| +..+++|..+..
T Consensus 136 ~~yikal~~plp~i~~~ptGGV~~~N~~~~l~aG-a~~vg~Gs~L~~ 181 (204)
T TIGR01182 136 VKMLKALAGPFPQVRFCPTGGINLANVRDYLAAP-NVACGGGSWLVP 181 (204)
T ss_pred HHHHHHHhccCCCCcEEecCCCCHHHHHHHHhCC-CEEEEEChhhcC
Confidence 456677777775 599999999999999999999 799999988874
No 163
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=94.85 E-value=0.047 Score=38.69 Aligned_cols=41 Identities=22% Similarity=0.102 Sum_probs=31.8
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchH
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRF 53 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~ 53 (104)
..+..+++....||++-|||+++.+.++.+.| +|.|++-+.
T Consensus 139 ~~l~~~~~~~~~pv~AlGGI~~~~i~~l~~~G-a~gvAvi~a 179 (180)
T PF02581_consen 139 DGLREIARASPIPVYALGGITPENIPELREAG-ADGVAVISA 179 (180)
T ss_dssp HHHHHHHHHTSSCEEEESS--TTTHHHHHHTT--SEEEESHH
T ss_pred HHHHHHHHhCCCCEEEEcCCCHHHHHHHHHcC-CCEEEEEee
Confidence 34556777778999999999999999999988 799988765
No 164
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.83 E-value=0.079 Score=39.79 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=37.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHc-----CCCcEEecchHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAE-----GRADLVVYGRFFLAN 57 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~-----g~~DlVa~gR~~lan 57 (104)
+..+.+++..+.|||++||+ +.++..++..- |.++-+.+|+.+-..
T Consensus 178 el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g 229 (241)
T PRK14114 178 SLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEG 229 (241)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCC
Confidence 35667777788899999999 99999888774 458999999987543
No 165
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.80 E-value=0.05 Score=44.82 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=37.9
Q ss_pred HHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574 17 MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63 (104)
Q Consensus 17 ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r 63 (104)
+.+..++|||+.||| ++.++.+++..| +|+|.+|+.|...-+.|.+
T Consensus 339 ~~~~~~v~vIadGGi~~~~di~kAla~G-A~~Vm~G~~~a~~~e~~~~ 385 (495)
T PTZ00314 339 YARERGVPCIADGGIKNSGDICKALALG-ADCVMLGSLLAGTEEAPGE 385 (495)
T ss_pred HHhhcCCeEEecCCCCCHHHHHHHHHcC-CCEEEECchhccccccCCc
Confidence 334457899999999 999999999999 7999999998876655543
No 166
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=94.79 E-value=0.073 Score=39.94 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=36.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHH--HHcCCCcEEecchHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKA--IAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~--l~~g~~DlVa~gR~~lan 57 (104)
+..+.+++..+.|||++||+ +.++.+++ +....+|.|.+|+.|-..
T Consensus 183 ~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g 231 (243)
T TIGR01919 183 LLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYAR 231 (243)
T ss_pred HHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcC
Confidence 35577888888899999999 89988876 333348999999987543
No 167
>PRK08999 hypothetical protein; Provisional
Probab=94.65 E-value=0.055 Score=41.19 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=34.7
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
..++.+++..+.||++-|||+++.+.++++.| +|.|++-+.+
T Consensus 270 ~~~~~~~~~~~~Pv~AiGGI~~~~~~~~~~~g-~~gva~i~~~ 311 (312)
T PRK08999 270 EGFAALIAGVPLPVYALGGLGPGDLEEAREHG-AQGIAGIRGL 311 (312)
T ss_pred HHHHHHHHhCCCCEEEECCCCHHHHHHHHHhC-CCEEEEEEEe
Confidence 34556777778899999999999999999998 7888876543
No 168
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=94.60 E-value=0.11 Score=39.51 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=31.0
Q ss_pred CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
+.|+.+.|||+++.+.++.+.| +|.|++|...-+-|
T Consensus 227 ~i~i~asGGIt~~ni~~~a~~G-ad~Isvgal~~s~~ 262 (269)
T cd01568 227 RVLLEASGGITLENIRAYAETG-VDVISTGALTHSAP 262 (269)
T ss_pred CeEEEEECCCCHHHHHHHHHcC-CCEEEEcHHHcCCC
Confidence 5699999999999999999999 89999986665543
No 169
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.56 E-value=0.094 Score=38.79 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=38.1
Q ss_pred chHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574 11 PHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLP 61 (104)
Q Consensus 11 ~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~ 61 (104)
+...+.++..++ .++|.+||++++.+.+.++.| +.++.|...|.+.++.
T Consensus 143 ~~~lk~l~~p~p~~~~~ptGGV~~~ni~~~l~ag--~v~~vggs~L~~~~~~ 192 (212)
T PRK05718 143 VKMLKALAGPFPDVRFCPTGGISPANYRDYLALP--NVLCIGGSWMVPKDAI 192 (212)
T ss_pred HHHHHHHhccCCCCeEEEeCCCCHHHHHHHHhCC--CEEEEEChHhCCcchh
Confidence 456667777775 599999999999999999999 5666667777766653
No 170
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.55 E-value=0.12 Score=38.43 Aligned_cols=44 Identities=30% Similarity=0.421 Sum_probs=37.3
Q ss_pred hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
+..+.+|+..+ .|+++-||| +++++.++++.| +|.+.+|..++.
T Consensus 174 ~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~g-aD~vvvGSai~~ 219 (244)
T PRK13125 174 RNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAG-ADGVVVGTAFIE 219 (244)
T ss_pred HHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECHHHHH
Confidence 35567888774 689999999 999999999888 899999999875
No 171
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=94.38 E-value=0.054 Score=41.21 Aligned_cols=43 Identities=26% Similarity=0.337 Sum_probs=37.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
..++.+++.+++|||++||- +++...++..+|.+|.+..|.-|
T Consensus 189 ~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiF 232 (256)
T COG0107 189 ELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAASIF 232 (256)
T ss_pred HHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhh
Confidence 46678999999999999999 99999999999999987766554
No 172
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.31 E-value=0.13 Score=39.64 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=34.3
Q ss_pred HHHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhC
Q 046574 13 SLLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 13 ~~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lan 57 (104)
..+.+.+.. +.|+.+.|||+++.+.++...| +|.|++|...-+=
T Consensus 222 ~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tG-vD~Isvg~lt~s~ 267 (277)
T PRK05742 222 DMREAVRLTAGRAKLEASGGINESTLRVIAETG-VDYISIGAMTKDV 267 (277)
T ss_pred HHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcC-CCEEEEChhhcCC
Confidence 334444444 5699999999999999999988 8999999765443
No 173
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.28 E-value=0.05 Score=43.35 Aligned_cols=41 Identities=34% Similarity=0.412 Sum_probs=36.4
Q ss_pred CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574 22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63 (104)
Q Consensus 22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r 63 (104)
++|||+.||| +..++-++|.-| +|.|.+|+.|+...+-+-+
T Consensus 256 ~vpVIAdGGI~~~~diakAlalG-Ad~Vm~Gs~fa~t~Espg~ 297 (368)
T PRK08649 256 YVHVIADGGIGTSGDIAKAIACG-ADAVMLGSPLARAAEAPGR 297 (368)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC-CCeecccchhcccccCCCc
Confidence 4799999999 999999999998 7999999999987776544
No 174
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=94.23 E-value=0.12 Score=39.66 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=35.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcC-CCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEG-RADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g-~~DlVa~gR~~ 54 (104)
+..+.+++..+.|||++||+ +.++..++...| .+.-|.+||++
T Consensus 197 el~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 197 ELVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 35567888888999999999 999999888765 34668899997
No 175
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.21 E-value=0.11 Score=41.33 Aligned_cols=39 Identities=33% Similarity=0.436 Sum_probs=33.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
+..+.||+.|..+.+..|++ |++.|+.+++.| +|.|-+|
T Consensus 139 ~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aG-AD~ikVg 178 (343)
T TIGR01305 139 EFVKLVREAFPEHTIMAGNVVTGEMVEELILSG-ADIVKVG 178 (343)
T ss_pred HHHHHHHhhCCCCeEEEecccCHHHHHHHHHcC-CCEEEEc
Confidence 46778999999888999999 999999999999 7876543
No 176
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.17 E-value=0.1 Score=42.40 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=40.8
Q ss_pred cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh--hCCCC
Q 046574 21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE--FNAPL 70 (104)
Q Consensus 21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~--~g~~l 70 (104)
.+.|||+.||| ++.++.++|..| +|.|.+|+.|....+-|-... +|+.+
T Consensus 326 ~~vpviadGGi~~~~di~kAla~G-A~~V~~G~~~a~~~e~pg~~~~~~g~~~ 377 (450)
T TIGR01302 326 SGIPVIADGGIRYSGDIVKALAAG-ADAVMLGSLLAGTTESPGEYEIINGRRY 377 (450)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcC-CCEEEECchhhcCCcCCCceEEECCEEE
Confidence 57899999999 999999999999 899999999988887775543 35443
No 177
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=94.05 E-value=0.12 Score=39.27 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=40.9
Q ss_pred HHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 14 LLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 14 ~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
...+...+. ..+|+-+|| +++++..+...| +|.|.+|..++.+||....+++
T Consensus 199 ~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G-~davLVGe~lm~~~d~~~~~~~ 253 (254)
T PF00218_consen 199 TEELAPLIPKDVIVISESGIKTPEDARRLARAG-ADAVLVGEALMRSPDPGEALRE 253 (254)
T ss_dssp HHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT--SEEEESHHHHTSSSHHHHHHH
T ss_pred HHHHHhhCccceeEEeecCCCCHHHHHHHHHCC-CCEEEECHHHhCCCCHHHHHhc
Confidence 334555553 578888999 999999998877 7999999999999999887753
No 178
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=93.93 E-value=0.26 Score=37.89 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=40.9
Q ss_pred hHHHHHHHHcCCeEEEeC--CCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 12 HSLLLMRKAFKGTFLVAG--GYDREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~G--gi~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
+.++.|++.+++||++-| ||+.++..++++.| ++-|.+...+..+|
T Consensus 190 ~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G-~~kinv~T~i~~a~ 237 (281)
T PRK06806 190 DRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHG-IRKINVATATFNSV 237 (281)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEhHHHHHHH
Confidence 567788888899999999 99999999999999 89999999998843
No 179
>PRK08005 epimerase; Validated
Probab=93.88 E-value=0.32 Score=35.97 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=37.8
Q ss_pred HHHHcCC-eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 17 MRKAFKG-TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 17 ir~~~~~-pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+|+..+. .+-+-||++.+.+.++.+.| +|.+.+|+.+..++|..+.++
T Consensus 157 l~~~~~~~~I~VDGGI~~~~i~~l~~aG-ad~~V~GsaiF~~~d~~~~~~ 205 (210)
T PRK08005 157 SREHFPAAECWADGGITLRAARLLAAAG-AQHLVIGRALFTTANYDVTLS 205 (210)
T ss_pred HHHhcccCCEEEECCCCHHHHHHHHHCC-CCEEEEChHhhCCCCHHHHHH
Confidence 3344332 57777999999999999999 799999999988888655544
No 180
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=93.85 E-value=0.14 Score=39.12 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=32.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHH--HHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKA--IAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~--l~~g~~DlVa~gR~~l 55 (104)
+..+.+.+.++.|||++||+ +.++..++ +..|..+ +.+|+.+.
T Consensus 191 el~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~-aIvG~Alf 236 (253)
T TIGR02129 191 ELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVD-LTIGSALD 236 (253)
T ss_pred HHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCc-EEeeehHH
Confidence 35567888888999999999 99999877 4335444 77777764
No 181
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=93.83 E-value=0.28 Score=37.00 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=34.4
Q ss_pred HHHHHHcCCeEEEeCCCC---HHHH----HHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574 15 LLMRKAFKGTFLVAGGYD---REDG----NKAIAEGRADLVVYGRFFLANPDLPRR 63 (104)
Q Consensus 15 ~~ir~~~~~pvi~~Ggi~---~~~a----e~~l~~g~~DlVa~gR~~lanPdl~~r 63 (104)
+.+.+...+||.+.|||+ .+++ .++++.| ++.+++||.++..||-...
T Consensus 189 ~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aG-A~Gis~gr~i~~~~~p~~~ 243 (267)
T PRK07226 189 REVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAG-AAGVAVGRNVFQHEDPEAI 243 (267)
T ss_pred HHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcC-CcEEehhhhhhcCCCHHHH
Confidence 334343457999999995 3444 4455888 6899999999999984433
No 182
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=93.82 E-value=0.13 Score=37.48 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=40.7
Q ss_pred chHHHHHHHHcCCeEEEeCCCCHH---HH--------HHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 11 PHSLLLMRKAFKGTFLVAGGYDRE---DG--------NKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi~~~---~a--------e~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
++.+..+|+.++..+++++||.++ .. +++.+.| +|++.+||++..++|..+.++
T Consensus 146 ~~~~~~ir~~~~~~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~G-ad~iVvGr~I~~~~d~~~~~~ 210 (213)
T TIGR01740 146 AEEAKEIRKFTGDFLILTPGIRLQSKGADDQQRVVTLEDAKEAG-ADVIIVGRGIYAAEDPVEAAK 210 (213)
T ss_pred HHHHHHHHHhcCCceEEeCCcCCCCCCcCCccccCCHHHHHHcC-CCEEEEChhhcCCCCHHHHHH
Confidence 356677888887568999999544 22 6777778 799999999998888655543
No 183
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=93.70 E-value=0.3 Score=37.18 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=37.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
..++.|++..++|||+-+|| +|.+|.++++-| +|.|.+-.....-.|
T Consensus 165 ~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG-~daVLvNTAiA~A~d 212 (247)
T PF05690_consen 165 YNLRIIIERADVPVIVDAGIGTPSDAAQAMELG-ADAVLVNTAIAKAKD 212 (247)
T ss_dssp HHHHHHHHHGSSSBEEES---SHHHHHHHHHTT--SEEEESHHHHTSSS
T ss_pred HHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcC-CceeehhhHHhccCC
Confidence 47788999999999999999 999999999999 899988776655444
No 184
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=93.66 E-value=0.11 Score=37.51 Aligned_cols=50 Identities=22% Similarity=0.341 Sum_probs=37.2
Q ss_pred HHHHHHHcCCe-EEEeCCCCHH--HHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 14 LLLMRKAFKGT-FLVAGGYDRE--DGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 14 ~~~ir~~~~~p-vi~~Ggi~~~--~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
.+.+++..+.. .|+.||++++ .+.++++.| +|.+.+||++...+|..+.+
T Consensus 153 i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~aG-ad~iV~Gr~I~~~~d~~~~~ 205 (215)
T PRK13813 153 VRYIRSRLGDELKIISPGIGAQGGKAADAIKAG-ADYVIVGRSIYNAADPREAA 205 (215)
T ss_pred HHHHHHhcCCCcEEEeCCcCCCCCCHHHHHHcC-CCEEEECcccCCCCCHHHHH
Confidence 34666666543 5577999665 388999888 79999999999888854443
No 185
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=93.62 E-value=0.16 Score=38.74 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=33.7
Q ss_pred HHHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 13 SLLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 13 ~~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
..+.+.+.. +.|+.+.|||+++.+.++.+.| +|.|+++...-
T Consensus 215 ~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~G-vd~Iav~sl~~ 258 (268)
T cd01572 215 ELREAVALLKGRVLLEASGGITLENIRAYAETG-VDYISVGALTH 258 (268)
T ss_pred HHHHHHHHcCCCCcEEEECCCCHHHHHHHHHcC-CCEEEEEeeec
Confidence 344444544 3699999999999999999998 89999997654
No 186
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=93.53 E-value=0.23 Score=36.59 Aligned_cols=50 Identities=20% Similarity=0.109 Sum_probs=38.5
Q ss_pred hHHHHHHHHcCC--eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574 12 HSLLLMRKAFKG--TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR 62 (104)
Q Consensus 12 ~~~~~ir~~~~~--pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ 62 (104)
+.+..+|+..+. .+.++|||+++.+....+.| +|.+.+||+....+|-..
T Consensus 151 ~~~~~ir~~~~~~~~i~V~gGI~~~~~~~~~~~~-ad~~VvGr~I~~a~dp~~ 202 (216)
T PRK13306 151 KDLNKVKKLSDMGFKVSVTGGLVVEDLKLFKGIP-VKTFIAGRAIRGAADPAA 202 (216)
T ss_pred HHHHHHHHHhcCCCeEEEcCCCCHhhHHHHhcCC-CCEEEECCcccCCCCHHH
Confidence 456677777642 37888999998887766666 899999999888888443
No 187
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.50 E-value=0.16 Score=41.82 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=39.0
Q ss_pred HcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 20 AFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 20 ~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
.+++|||+-||| ++.++.++|..| +|.|.+|..|.-..+-|-..
T Consensus 328 ~~~~~via~ggi~~~~~~~~al~~g-a~~v~~g~~~ag~~Espg~~ 372 (479)
T PRK07807 328 ELGAHVWADGGVRHPRDVALALAAG-ASNVMIGSWFAGTYESPGDL 372 (479)
T ss_pred hcCCcEEecCCCCCHHHHHHHHHcC-CCeeeccHhhccCccCCCce
Confidence 457899999999 999999999998 79999999999888777643
No 188
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.48 E-value=0.16 Score=41.74 Aligned_cols=42 Identities=29% Similarity=0.446 Sum_probs=36.1
Q ss_pred cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574 21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63 (104)
Q Consensus 21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r 63 (104)
++.|||+.||| ++.++.++|..| +|.|.+|..|.-.-+-|-.
T Consensus 327 ~~~~viadGgi~~~~di~kala~G-A~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 327 LGGHVWADGGVRHPRDVALALAAG-ASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred cCCcEEEeCCCCCHHHHHHHHHcC-CCEEeechhhcccccCCCc
Confidence 47899999999 999999999999 7999999999866655544
No 189
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=93.45 E-value=0.24 Score=39.16 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=43.5
Q ss_pred chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR 62 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ 62 (104)
++..+.+.+..++|||+.+|| +++++.++++-| +|.|.+..+...-+|-+.
T Consensus 238 p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelG-adgVL~nSaIa~a~dPv~ 289 (326)
T PRK11840 238 PYTIRLIVEGATVPVLVDAGVGTASDAAVAMELG-CDGVLMNTAIAEAKNPVL 289 (326)
T ss_pred HHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEcceeccCCCHHH
Confidence 456677888888999999999 999999999999 899999888877777654
No 190
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=93.39 E-value=0.14 Score=40.74 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=36.4
Q ss_pred HHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574 17 MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63 (104)
Q Consensus 17 ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r 63 (104)
.++.+++|||+-||| +.-++-++|..| +|.|.+|+.|...-+-|-+
T Consensus 206 ~a~~~~v~iIADGGi~~sGDi~KAla~G-Ad~VMlG~llAgt~EsPG~ 252 (352)
T PF00478_consen 206 AARDYGVPIIADGGIRTSGDIVKALAAG-ADAVMLGSLLAGTDESPGE 252 (352)
T ss_dssp HHHCTTSEEEEESS-SSHHHHHHHHHTT--SEEEESTTTTTBTTSSSE
T ss_pred HhhhccCceeecCCcCcccceeeeeeec-ccceeechhhccCcCCCCc
Confidence 445567899999999 888888999999 7999999998877665543
No 191
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=93.36 E-value=0.22 Score=36.97 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=35.2
Q ss_pred hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+..+.+++..+ .++.++||| |.++|.+.++.| ++.|+..++.
T Consensus 167 ~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aG-A~riGtS~~~ 211 (221)
T PRK00507 167 EDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAG-ATRLGTSAGV 211 (221)
T ss_pred HHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcC-cceEccCcHH
Confidence 45566778775 489999999 999999999999 7999987654
No 192
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=93.36 E-value=0.33 Score=36.36 Aligned_cols=50 Identities=30% Similarity=0.323 Sum_probs=42.2
Q ss_pred HHHHHHHHcC--CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574 13 SLLLMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r 63 (104)
.+..+++..+ ..|-.+|||+++.+..++..| +|+|.+||......|-.+-
T Consensus 153 ~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~-~~ivIvGraIt~a~dp~~~ 204 (217)
T COG0269 153 DLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIG-ADIVIVGRAITGAKDPAEA 204 (217)
T ss_pred HHHHHHHhhccCceEEEecCCCHHHHHHHhcCC-CCEEEECchhcCCCCHHHH
Confidence 4667888876 488899999999999999988 8999999999888875443
No 193
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.35 E-value=0.26 Score=37.91 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=34.5
Q ss_pred hHHHHHHHHcC--CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~--~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+.++.+.+..+ .|+.+.|||+++.+.+++..| +|.|++|...-
T Consensus 220 e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~G-vd~IAvg~l~~ 264 (277)
T PRK08072 220 DEIREFVKLVPSAIVTEASGGITLENLPAYGGTG-VDYISLGFLTH 264 (277)
T ss_pred HHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcC-CCEEEEChhhc
Confidence 34555556555 467799999999999999999 89999998665
No 194
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=93.32 E-value=0.22 Score=41.66 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=37.2
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
+..+.+++.+++|||++||+ +++...+++..+.+|.++.|.-|-.
T Consensus 472 ~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~ 517 (538)
T PLN02617 472 ELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR 517 (538)
T ss_pred HHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence 35567888889999999999 9999999999877888887755443
No 195
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.28 E-value=0.26 Score=36.31 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=36.2
Q ss_pred cchHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574 10 CPHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60 (104)
Q Consensus 10 ~~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl 60 (104)
.+...+.++.-++ .++|.+||++++.+.+.++.|.+ +++.| .+|.+.++
T Consensus 131 G~~yikal~~plp~~~l~ptGGV~~~n~~~~l~ag~~-~~~gg-s~l~~~~~ 180 (201)
T PRK06015 131 GAAFLKALSSPLAGTFFCPTGGISLKNARDYLSLPNV-VCVGG-SWVAPKEL 180 (201)
T ss_pred CHHHHHHHHhhCCCCcEEecCCCCHHHHHHHHhCCCe-EEEEc-hhhCCchh
Confidence 3567777888776 59999999999999999999854 33334 45545544
No 196
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=93.26 E-value=0.27 Score=36.93 Aligned_cols=42 Identities=31% Similarity=0.465 Sum_probs=34.3
Q ss_pred cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
.+.+||+=|.| ||++|.++++-| ++.|.+|- .|..|..+.+|
T Consensus 179 ~~~~vIAEGr~~tP~~Ak~a~~~G-a~aVvVGs-AITRp~~It~~ 221 (229)
T COG3010 179 AGCRVIAEGRYNTPEQAKKAIEIG-ADAVVVGS-AITRPEEITQW 221 (229)
T ss_pred CCCeEEeeCCCCCHHHHHHHHHhC-CeEEEECc-ccCCHHHHHHH
Confidence 46799999999 999999999999 79999985 45666655443
No 197
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=93.20 E-value=0.24 Score=36.97 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=35.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+..+.+|+..+.|+++.||| +++++.++++. +|.|.+|..++
T Consensus 177 ~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~~--ADgvVvGSaiv 219 (242)
T cd04724 177 ELIKRIRKYTDLPIAVGFGISTPEQAAEVAKY--ADGVIVGSALV 219 (242)
T ss_pred HHHHHHHhcCCCcEEEEccCCCHHHHHHHHcc--CCEEEECHHHH
Confidence 45677888778899999999 79899998765 89999998775
No 198
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.20 E-value=0.22 Score=37.03 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=32.4
Q ss_pred HHHH-cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC
Q 046574 17 MRKA-FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN 57 (104)
Q Consensus 17 ir~~-~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan 57 (104)
+.+. .+.|||++||+ +.++..++...| +|.|.+|+.|-..
T Consensus 176 l~~~~~~~pviasGGv~~~~Dl~~l~~~g-~~gvivg~al~~g 217 (228)
T PRK04128 176 IERFWGDEEFIYAGGVSSAEDVKKLAEIG-FSGVIIGKALYEG 217 (228)
T ss_pred HHHhcCCCCEEEECCCCCHHHHHHHHHCC-CCEEEEEhhhhcC
Confidence 3344 46799999999 999999988766 8999999987543
No 199
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=93.19 E-value=0.28 Score=37.26 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=37.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHc-CCCcEEecchHHhhC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAE-GRADLVVYGRFFLAN 57 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~-g~~DlVa~gR~~lan 57 (104)
+....+.+.+++|||++||+ |.++.+.+-.. | ++-|.+||++...
T Consensus 181 ~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G-~~GvIvG~ALy~g 227 (241)
T COG0106 181 DLVKELAEAVDIPVIASGGVSSLDDIKALKELSG-VEGVIVGRALYEG 227 (241)
T ss_pred HHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCC-CcEEEEehHHhcC
Confidence 35567888889999999999 89998877766 5 7899999998764
No 200
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=93.13 E-value=0.25 Score=37.03 Aligned_cols=51 Identities=24% Similarity=0.284 Sum_probs=40.3
Q ss_pred HHHHHHcC---Ce-EEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 15 LLMRKAFK---GT-FLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 15 ~~ir~~~~---~p-vi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+.+|+..+ .. +-+-|||+.+.+.++.+.| +|.+..|+++..++|+..+++.
T Consensus 158 ~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AG-ad~~VaGSalF~~~d~~~~i~~ 212 (220)
T COG0036 158 RELRAMIDERLDILIEVDGGINLETIKQLAAAG-ADVFVAGSALFGADDYKATIRE 212 (220)
T ss_pred HHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcC-CCEEEEEEEEeCCccHHHHHHH
Confidence 44555554 23 4555999999999999999 7999999999999998877765
No 201
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=93.05 E-value=0.32 Score=37.06 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHHHHHcC--CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 14 LLLMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 14 ~~~ir~~~~--~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.+.+.+... .|+.+.|||+++.+.++.+.| +|.|++|...-
T Consensus 212 lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~G-vd~Isvgait~ 254 (265)
T TIGR00078 212 IKEAVQLLKGRVLLEASGGITLDNLEEYAETG-VDVISSGALTH 254 (265)
T ss_pred HHHHHHHhcCCCcEEEECCCCHHHHHHHHHcC-CCEEEeCHHHc
Confidence 334444443 699999999999999999999 89999976543
No 202
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=92.99 E-value=0.19 Score=40.26 Aligned_cols=33 Identities=36% Similarity=0.479 Sum_probs=27.6
Q ss_pred CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
+.||++||+ ++.++-.++.=| +|.|++||++|.
T Consensus 275 V~Li~sGgl~t~~dv~kalaLG-AD~v~igt~~li 308 (368)
T PF01645_consen 275 VSLIASGGLRTGDDVAKALALG-ADAVYIGTAALI 308 (368)
T ss_dssp SEEEEESS--SHHHHHHHHHCT--SEEE-SHHHHH
T ss_pred eEEEEeCCccCHHHHHHHHhcC-CCeeEecchhhh
Confidence 479999999 999999999999 799999999883
No 203
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=92.88 E-value=0.27 Score=37.58 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=28.6
Q ss_pred CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574 22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.|+++.|||+++.+.+..+.| +|.|+++..+
T Consensus 230 ~i~i~AsGGI~~~ni~~~~~~G-vd~I~vsai~ 261 (272)
T cd01573 230 PVLLAAAGGINIENAAAYAAAG-ADILVTSAPY 261 (272)
T ss_pred CceEEEECCCCHHHHHHHHHcC-CcEEEEChhh
Confidence 5799999999999999999998 7999888654
No 204
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=92.84 E-value=0.18 Score=41.31 Aligned_cols=40 Identities=28% Similarity=0.446 Sum_probs=34.2
Q ss_pred cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574 21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP 61 (104)
Q Consensus 21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~ 61 (104)
.+.|||+.||| ++.++-++|.-| +|+|.+|..|..--+-|
T Consensus 330 ~~~~viadGGi~~~~di~kAla~G-A~~v~~G~~~a~~~e~p 370 (486)
T PRK05567 330 YGIPVIADGGIRYSGDIAKALAAG-ASAVMLGSMLAGTEEAP 370 (486)
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhC-CCEEEECccccccccCC
Confidence 35799999999 999999999999 79999999887655444
No 205
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=92.84 E-value=0.24 Score=37.32 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=40.7
Q ss_pred CcchHHHHHHHHcC---------CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574 9 ECPHSLLLMRKAFK---------GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63 (104)
Q Consensus 9 ~~~~~~~~ir~~~~---------~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r 63 (104)
++++....||+.+. ++|+..|+++++.+.+++..+.+|-+.+|+.-+ +|+-..+
T Consensus 177 ~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl-~~~~f~~ 239 (242)
T cd00311 177 QAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASL-KAESFLD 239 (242)
T ss_pred HHHHHHHHHHHHHHHhcccccCceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhh-CHHHHHH
Confidence 44455556666542 478888888999999999999999999999998 4443333
No 206
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.75 E-value=0.12 Score=38.00 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=37.2
Q ss_pred CCCCCCcchHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574 4 VGEKSECPHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 4 ~~~~~~~~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
+.+.-+.+...+.++.-++ .++|.+||++++.+.+.++.| +.++++|..+..
T Consensus 129 PA~~~GG~~~ik~l~~p~p~~~~~ptGGV~~~N~~~~l~ag-~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 129 PAGALGGPSYIKALRGPFPDLPFMPTGGVNPDNLAEYLKAG-AVAVGGGSWLFP 181 (196)
T ss_dssp TTTTTTHHHHHHHHHTTTTT-EEEEBSS--TTTHHHHHTST-TBSEEEESGGGS
T ss_pred cchhcCcHHHHHHHhccCCCCeEEEcCCCCHHHHHHHHhCC-CEEEEECchhcC
Confidence 3333343566777777775 599999999999999999999 688888876543
No 207
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=92.74 E-value=0.61 Score=34.75 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=34.1
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
.+-+.|||+.+.+.++.+.| +|.+.+|+++...+|....++
T Consensus 173 ~IeVDGGI~~eti~~l~~aG-aDi~V~GSaiF~~~d~~~~~~ 213 (223)
T PRK08745 173 RLEIDGGVKADNIGAIAAAG-ADTFVAGSAIFNAPDYAQVIA 213 (223)
T ss_pred eEEEECCCCHHHHHHHHHcC-CCEEEEChhhhCCCCHHHHHH
Confidence 46777999999999999999 799999999887778654443
No 208
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=92.45 E-value=0.66 Score=34.80 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=34.3
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
.+-+-||++.+.+.++.+.| +|.+..|+++..++|..+.++
T Consensus 181 ~IeVDGGI~~~ti~~l~~aG-aD~~V~GSalF~~~d~~~~i~ 221 (228)
T PRK08091 181 LISIDGSMTLELASYLKQHQ-IDWVVSGSALFSQGELKTTLK 221 (228)
T ss_pred eEEEECCCCHHHHHHHHHCC-CCEEEEChhhhCCCCHHHHHH
Confidence 46666999999999999999 799999999988888655443
No 209
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=92.33 E-value=0.24 Score=36.66 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=38.9
Q ss_pred HHHHHHHHcC-CeEEEeCCCCHH-----------HHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 13 SLLLMRKAFK-GTFLVAGGYDRE-----------DGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 13 ~~~~ir~~~~-~pvi~~Ggi~~~-----------~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
....+|+.++ ..++.++|+.++ ...++++.| +|+|.+||+....+|=...++
T Consensus 158 ~~~~ir~~~~~~~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~G-ad~iVvGR~I~~a~dP~~~a~ 221 (230)
T PRK00230 158 EAAAIREATGPDFLLVTPGIRPAGSDAGDQKRVMTPAQAIAAG-SDYIVVGRPITQAADPAAAYE 221 (230)
T ss_pred HHHHHHhhcCCceEEEcCCcCCCCCCcchHHHHhCHHHHHHcC-CCEEEECCcccCCCCHHHHHH
Confidence 3456777764 366778999655 578888877 799999999888887655443
No 210
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.30 E-value=0.27 Score=39.23 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=30.2
Q ss_pred HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchH
Q 046574 14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRF 53 (104)
Q Consensus 14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~ 53 (104)
...+.+.+++|||+ |++ |++.|+++++.| +|.|.+|+.
T Consensus 179 i~~~ik~~~ipVIa-G~V~t~e~A~~l~~aG-AD~V~VG~G 217 (368)
T PRK08649 179 LKEFIYELDVPVIV-GGCVTYTTALHLMRTG-AAGVLVGIG 217 (368)
T ss_pred HHHHHHHCCCCEEE-eCCCCHHHHHHHHHcC-CCEEEECCC
Confidence 33444557889998 778 999999999988 899988865
No 211
>PRK14567 triosephosphate isomerase; Provisional
Probab=92.18 E-value=0.33 Score=36.95 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=42.6
Q ss_pred CCcchHHHHHHHHc---------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 8 SECPHSLLLMRKAF---------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 8 ~~~~~~~~~ir~~~---------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
.++++....||+.+ +.+++..|+++++.+++++..+.+|-+.+|+.-| +|+-..++.
T Consensus 179 e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgasL-~~~~F~~Ii 244 (253)
T PRK14567 179 EQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGASL-KAAEFNEII 244 (253)
T ss_pred HHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhhh-cHHHHHHHH
Confidence 34445556677743 2478887888999999999999999999999988 554444443
No 212
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=92.11 E-value=0.052 Score=39.27 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=29.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRF 53 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~ 53 (104)
+..+.+++.++.|+|+.|=+ +.+++.++++.| ++.|+-+.+
T Consensus 130 ~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aG-a~aVSTS~~ 171 (175)
T PF04309_consen 130 KVIKKIREETNIPIIAGGLIRTKEDVEEALKAG-ADAVSTSNK 171 (175)
T ss_dssp HHHCCCCCCCSS-EEEESS--SHHHHHHHCCTT-CEEEEE--H
T ss_pred HHHHHHHHhcCCCEEeecccCCHHHHHHHHHcC-CEEEEcCCh
Confidence 34445666677899998888 999999999999 688887654
No 213
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=92.00 E-value=0.42 Score=38.22 Aligned_cols=41 Identities=20% Similarity=0.141 Sum_probs=32.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
.....+++.+++|||+ |++ +.+.|.++++.| +|.|.+||.-
T Consensus 178 ~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~~aG-aDgV~~G~gg 219 (369)
T TIGR01304 178 LNLKEFIGELDVPVIA-GGVNDYTTALHLMRTG-AAGVIVGPGG 219 (369)
T ss_pred HHHHHHHHHCCCCEEE-eCCCCHHHHHHHHHcC-CCEEEECCCC
Confidence 3444566777899997 777 999999999988 8998877644
No 214
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=91.84 E-value=0.87 Score=34.61 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=40.4
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
....+.+.+. ..+|+-+|| +++++..+.. + +|.|.+|..++..+|....++
T Consensus 191 ~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~-~-~davLvG~~lm~~~d~~~~~~ 244 (247)
T PRK13957 191 LVEEVAAFLPPNIVKVGESGIESRSDLDKFRK-L-VDAALIGTYFMEKKDIRKAWL 244 (247)
T ss_pred HHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHH-h-CCEEEECHHHhCCCCHHHHHH
Confidence 3455667764 367888999 9999988764 5 999999999999999776654
No 215
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=91.82 E-value=0.42 Score=37.62 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=32.9
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
+..+.+|+.++.|++..|++ +++.|+.+++.| +|.|-+|
T Consensus 126 ~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aG-ad~I~V~ 165 (321)
T TIGR01306 126 NMIKHIKTHLPDSFVIAGNVGTPEAVRELENAG-ADATKVG 165 (321)
T ss_pred HHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcC-cCEEEEC
Confidence 45678999998898999999 999999999999 6876443
No 216
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.76 E-value=0.48 Score=35.31 Aligned_cols=41 Identities=24% Similarity=0.220 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
..+.+++. ..|+|++||+ +.++..++...| +|.+.+|+++-
T Consensus 181 l~~~~~~~-~~~viasGGv~s~~Dl~~l~~~G-~~gvivg~Aly 222 (232)
T PRK13586 181 VKDYARLI-RGLKEYAGGVSSDADLEYLKNVG-FDYIIVGMAFY 222 (232)
T ss_pred HHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC-CCEEEEehhhh
Confidence 34445544 5579999999 999998888776 89999999874
No 217
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=91.49 E-value=0.88 Score=35.19 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=43.7
Q ss_pred hHHHHHHHHc-CCeEEEeCC--CCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAF-KGTFLVAGG--YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~-~~pvi~~Gg--i~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+.++.|++.+ ++||++-|| ++.+.+.++++.| ++-|.+++.+.. ++...+++
T Consensus 191 e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~G-i~KiNv~T~i~~--~~~~~~~~ 245 (293)
T PRK07315 191 DHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLG-VAKVNVNTECQI--AFANATRK 245 (293)
T ss_pred HHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEccHHHH--HHHHHHHH
Confidence 5778899988 489999999 8999999999999 799999999887 55555544
No 218
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=91.29 E-value=0.69 Score=35.29 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=35.7
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+..+.+|+..+.||++.=|| ++++++++. .+ +|.|.+|..++
T Consensus 188 ~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~-aDGvIVGSa~v 230 (259)
T PF00290_consen 188 EFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AG-ADGVIVGSAFV 230 (259)
T ss_dssp HHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TT-SSEEEESHHHH
T ss_pred HHHHHHHhhcCcceEEecCCCCHHHHHHHH-cc-CCEEEECHHHH
Confidence 56778999988899999899 999999998 45 89999999876
No 219
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=91.23 E-value=0.64 Score=30.78 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=42.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNK 72 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~ 72 (104)
..++.+|+......++.||. .....+.++....+|.|..|=+=..=++|++.+..|+++..
T Consensus 57 ~~~~~ik~~~p~~~iv~GG~~~t~~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~g~~~~~ 118 (127)
T cd02068 57 ELAKIAKEVLPNVIVVVGGPHATFFPEEILEEPGVDFVVIGEGEETFLKLLEELEEGEDLSE 118 (127)
T ss_pred HHHHHHHHHCCCCEEEECCcchhhCHHHHhcCCCCCEEEECCcHHHHHHHHHHHHcCCCccc
Confidence 46677888876556666665 21222333455568999999988888999999988866543
No 220
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.92 E-value=0.45 Score=36.53 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=28.3
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.++++|||+++.+.+....| +|+|++|...-
T Consensus 231 ~ieAsGgIt~~ni~~ya~~G-vD~IsvG~l~~ 261 (273)
T PRK05848 231 LLEASGNITLENINAYAKSG-VDAISSGSLIH 261 (273)
T ss_pred EEEEECCCCHHHHHHHHHcC-CCEEEeChhhc
Confidence 59999999999999999998 79999998665
No 221
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.61 E-value=0.62 Score=36.64 Aligned_cols=40 Identities=25% Similarity=0.251 Sum_probs=33.4
Q ss_pred CCeEEEeCCC-CHHHHHHHHHcCC-------CcEEecchHHhhCCcHH
Q 046574 22 KGTFLVAGGY-DREDGNKAIAEGR-------ADLVVYGRFFLANPDLP 61 (104)
Q Consensus 22 ~~pvi~~Ggi-~~~~ae~~l~~g~-------~DlVa~gR~~lanPdl~ 61 (104)
++|||++||| +...+..++.-|. .+-|.+|..||+-++-+
T Consensus 165 ~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~ 212 (320)
T cd04743 165 KIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAV 212 (320)
T ss_pred CccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhhc
Confidence 6899999999 8888777777664 27999999999977763
No 222
>PRK14057 epimerase; Provisional
Probab=90.59 E-value=1.5 Score=33.43 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=35.1
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
.+-+-|||+.+.+.++.+.| +|.+..|+++..++|+.+.+..
T Consensus 195 ~IeVDGGI~~~ti~~l~~aG-ad~~V~GSalF~~~d~~~~i~~ 236 (254)
T PRK14057 195 IIVIDGSLTQDQLPSLIAQG-IDRVVSGSALFRDDRLVENTRS 236 (254)
T ss_pred eEEEECCCCHHHHHHHHHCC-CCEEEEChHhhCCCCHHHHHHH
Confidence 46667999999999999999 7999999999888886555543
No 223
>PTZ00333 triosephosphate isomerase; Provisional
Probab=90.59 E-value=0.72 Score=35.07 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=42.5
Q ss_pred cchHHHHHHHHc----------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 10 CPHSLLLMRKAF----------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 10 ~~~~~~~ir~~~----------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+.+....||+.+ +.+|+..|+++++.+.+++....+|-+.+|+.-+. ++|..-+.
T Consensus 185 i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~asl~-~~f~~Ii~ 249 (255)
T PTZ00333 185 AQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGASLK-PDFVDIIK 249 (255)
T ss_pred HHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHhhh-hhHHHHHH
Confidence 334555677633 25788888889999999999888999999999986 78766543
No 224
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.58 E-value=0.37 Score=39.90 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=34.0
Q ss_pred CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574 23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRR 63 (104)
Q Consensus 23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~r 63 (104)
+|||+-||| +.-++-++|.-| +|+|.+||+|.-.-+-|-.
T Consensus 353 ~~viadgGir~~gdi~KAla~G-A~~vm~G~~~ag~~espg~ 393 (502)
T PRK07107 353 IPICSDGGIVYDYHMTLALAMG-ADFIMLGRYFARFDESPTN 393 (502)
T ss_pred ceEEEcCCCCchhHHHHHHHcC-CCeeeeChhhhccccCCCc
Confidence 699999999 778888999888 7999999999876655544
No 225
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=90.54 E-value=0.67 Score=33.50 Aligned_cols=45 Identities=27% Similarity=0.083 Sum_probs=36.5
Q ss_pred chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
.+.+..+++.+++||+.-|++ ++++++.+.+.| +|.|.++-..+.
T Consensus 61 ~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~G-ad~v~l~~~~~~ 106 (217)
T cd00331 61 LEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAG-ADAVLLIVAALD 106 (217)
T ss_pred HHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcC-CCEEEEeeccCC
Confidence 356678888888999987766 888999999999 799988766554
No 226
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.54 E-value=0.58 Score=38.55 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=30.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
+..+.||+.+....+.+|++ |.+.|+.+++.| +|+|.
T Consensus 257 ~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aG-ad~v~ 294 (479)
T PRK07807 257 EALRAVRALDPGVPIVAGNVVTAEGTRDLVEAG-ADIVK 294 (479)
T ss_pred HHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcC-CCEEE
Confidence 46778999886656666889 999999999999 79876
No 227
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.47 E-value=0.44 Score=37.93 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=37.0
Q ss_pred HHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 18 RKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 18 r~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
...+++|||+-||| +.-++-++|..| +|+|.+|..|...-+-|-.+
T Consensus 209 a~~~gvpiIADGGi~~sGDI~KAlaaG-Ad~VMlGsllAGt~EsPGe~ 255 (346)
T PRK05096 209 AHGLGGQIVSDGGCTVPGDVAKAFGGG-ADFVMLGGMLAGHEESGGEI 255 (346)
T ss_pred HHHcCCCEEecCCcccccHHHHHHHcC-CCEEEeChhhcCcccCCCcE
Confidence 34567899999999 667777888888 79999999998877666544
No 228
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.34 E-value=0.55 Score=36.35 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=31.0
Q ss_pred CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
+.++.++|||+++.+.+....| +|.|++|....+-|
T Consensus 243 ~i~leAsGGIt~~ni~~ya~tG-vD~Isvgsl~~sa~ 278 (288)
T PRK07428 243 RVKIEASGNITLETIRAVAETG-VDYISSSAPITRSP 278 (288)
T ss_pred CeEEEEECCCCHHHHHHHHHcC-CCEEEEchhhhCCC
Confidence 3589999999999999999988 89999998776433
No 229
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.32 E-value=0.56 Score=35.04 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=36.7
Q ss_pred chHHHHHHHHcC-CeEEEeCCCCH--HHHHHHHHcCCCcEEecchHHhh
Q 046574 11 PHSLLLMRKAFK-GTFLVAGGYDR--EDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 11 ~~~~~~ir~~~~-~pvi~~Ggi~~--~~ae~~l~~g~~DlVa~gR~~la 56 (104)
+...+.++.-+. .++|.+||+++ +.+.+.++.| +..|++|..+..
T Consensus 146 ~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG-a~avg~Gs~L~~ 193 (222)
T PRK07114 146 PGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG-VTCVGMGSKLIP 193 (222)
T ss_pred HHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC-CEEEEEChhhcC
Confidence 456666776665 58999999977 8999999998 799999988763
No 230
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=90.18 E-value=0.33 Score=36.08 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=39.5
Q ss_pred hHHHHHHHHcCC--eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 12 HSLLLMRKAFKG--TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 12 ~~~~~ir~~~~~--pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
+.+..+|+..+. +++++|||+++.+...-+. .+|+|.+|||....+|=...+
T Consensus 151 ~e~~~ir~~~~~~~~i~VtpGIr~~~~~~~dq~-rvd~iVVGR~It~A~dP~~aa 204 (218)
T PRK13305 151 ADLARMKALSDIGLELSITGGITPADLPLFKDI-RVKAFIAGRALAGAANPAQVA 204 (218)
T ss_pred HHHHHHHHHhCCCCcEEEeCCcCcccccccccc-CCCEEEECCcccCCCCHHHHH
Confidence 346678888753 4899999998887666444 479999999999888765543
No 231
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=90.10 E-value=1.3 Score=36.35 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=40.8
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
....+.+.+. ..+|+-+|| +++++..+ ..| +|.|.+|..++.+||....+++
T Consensus 199 ~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~-~davLiG~~lm~~~d~~~~~~~ 253 (454)
T PRK09427 199 RTRELAPLIPADVIVISESGIYTHAQVREL-SPF-ANGFLIGSSLMAEDDLELAVRK 253 (454)
T ss_pred HHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-Hhc-CCEEEECHHHcCCCCHHHHHHH
Confidence 3445666664 367777999 99999886 567 9999999999999998765554
No 232
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=89.91 E-value=0.73 Score=33.56 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=30.9
Q ss_pred chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
++..+.+.+++++|+|+.|-+ +.|++.++|..|. -.|+
T Consensus 133 Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA-~avS 171 (181)
T COG1954 133 PKVIKEITEKTHIPIIAGGLIETEEEVREALKAGA-VAVS 171 (181)
T ss_pred HHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCc-EEEe
Confidence 456677888888999997777 9999999999994 4554
No 233
>PRK14565 triosephosphate isomerase; Provisional
Probab=89.84 E-value=0.64 Score=35.07 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=41.8
Q ss_pred CcchHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 9 ECPHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 9 ~~~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
.+.+....||+..+ .+|+..|+++++.+++++..-.+|-+.+|+.-+ +|+-..++
T Consensus 175 ~i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl-~~~~f~~i 230 (237)
T PRK14565 175 AIAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASL-DVDSFCKI 230 (237)
T ss_pred HHHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhh-cHHHHHHH
Confidence 33455667887654 588888888999999999987799999999998 54433444
No 234
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=89.84 E-value=1.4 Score=33.67 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=36.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
..++.|++..++|||+-.|| +|.+|.++++=| +|.|.+-.+.
T Consensus 172 ~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG-~DaVL~NTAi 214 (262)
T COG2022 172 YNLEIIIEEADVPVIVDAGIGTPSDAAQAMELG-ADAVLLNTAI 214 (262)
T ss_pred HHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcc-cceeehhhHh
Confidence 57788999999999999999 999999999988 7988775443
No 235
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=89.68 E-value=1 Score=34.56 Aligned_cols=43 Identities=19% Similarity=0.148 Sum_probs=37.5
Q ss_pred hHHHHHHHHcCCeEEEeC--CCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKGTFLVAG--GYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~G--gi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+.++.|++.+++||.+-| ||+.+...++++.| ++-|.++..+.
T Consensus 190 e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~G-i~kiNv~T~l~ 234 (282)
T TIGR01859 190 ERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLG-IAKINIDTDCR 234 (282)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcC-CCEEEECcHHH
Confidence 466778888899999999 89999999999998 79999987664
No 236
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=89.39 E-value=0.74 Score=38.16 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=31.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+..+.||+.+....+..|++ |++.|+.+++.| +|.|.+
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aG-aD~i~v 316 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAG-VDGLRV 316 (505)
T ss_pred HHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcC-cCEEEE
Confidence 46788999887656666888 999999999999 799844
No 237
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=89.19 E-value=0.81 Score=33.55 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=35.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+..+.+++.+...++.+|.+ |.++++++++.| ++|+.-= -.||++.+..++
T Consensus 48 ~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG-A~FivSP---~~~~~v~~~~~~ 99 (196)
T PF01081_consen 48 EAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG-AQFIVSP---GFDPEVIEYARE 99 (196)
T ss_dssp HHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT--SEEEES---S--HHHHHHHHH
T ss_pred HHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC-CCEEECC---CCCHHHHHHHHH
Confidence 45666788888889999999 999999999999 5765431 256666655443
No 238
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=89.14 E-value=1 Score=34.48 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 13 SLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 13 ~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.++.+|+.. +.||+++||++++.+.++++. +|.+-+|..|=
T Consensus 190 ~l~~vr~~~~~~PvllggGvt~eNv~e~l~~--adGviVgS~~K 231 (257)
T TIGR00259 190 LLKLAKETVKDTPVLAGSGVNLENVEELLSI--ADGVIVATTIK 231 (257)
T ss_pred HHHHHHhccCCCeEEEECCCCHHHHHHHHhh--CCEEEECCCcc
Confidence 455676645 469999999999999999984 89998887764
No 239
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=89.09 E-value=1.1 Score=35.61 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=36.3
Q ss_pred eEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 24 TFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 24 pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
.+|+-+|| +++++..+.+.| +|.|.+|-.++..||.-..+++
T Consensus 290 ~~VsESGI~t~~Dv~~l~~~G-adAvLVGEsLMr~~dp~~~l~~ 332 (338)
T PLN02460 290 IVVGESGLFTPDDVAYVQNAG-VKAVLVGESLVKQDDPGKGIAG 332 (338)
T ss_pred EEEECCCCCCHHHHHHHHHCC-CCEEEECHHHhCCCCHHHHHHH
Confidence 56777999 999999999888 8999999999999997666553
No 240
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=89.07 E-value=1.8 Score=32.42 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=31.2
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcEEecchH-Hhh-CCcHHHHH
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADLVVYGRF-FLA-NPDLPRRF 64 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~-~la-nPdl~~ri 64 (104)
.+.+-|||+.+.+.++.+.| +|.+..|+. +.. ++|..+.+
T Consensus 171 ~IeVDGGI~~~~i~~~~~aG-ad~~V~Gss~iF~~~~d~~~~i 212 (229)
T PRK09722 171 LIEVDGSCNQKTYEKLMEAG-ADVFIVGTSGLFNLDEDIDEAW 212 (229)
T ss_pred EEEEECCCCHHHHHHHHHcC-CCEEEEChHHHcCCCCCHHHHH
Confidence 46677999999999999999 799999986 544 46754433
No 241
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=88.98 E-value=1 Score=35.95 Aligned_cols=37 Identities=32% Similarity=0.445 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
..+.||+.+++|+|+-|=+++++|+.+++.| +|.|.+
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~G-~d~I~V 263 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIELG-ADGVIL 263 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHCC-cCEEEE
Confidence 6678999999999998755999999999998 798875
No 242
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=88.77 E-value=1.1 Score=33.06 Aligned_cols=51 Identities=24% Similarity=0.350 Sum_probs=38.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+..+.+++.++..+|.+|.+ |+++++++++.| ++|+.- |- .||++.+..++
T Consensus 48 ~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aG-A~Fivs--P~-~~~~v~~~~~~ 99 (204)
T TIGR01182 48 DAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAG-AQFIVS--PG-LTPELAKHAQD 99 (204)
T ss_pred HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEEEC--CC-CCHHHHHHHHH
Confidence 45667787777778999999 999999999999 688732 11 37788776554
No 243
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=88.77 E-value=1.9 Score=37.32 Aligned_cols=53 Identities=15% Similarity=0.062 Sum_probs=42.3
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
....+++.+. ..+|+-+|| +++++..+.+.| +|.|.+|..++..||....+++
T Consensus 200 ~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G-~davLIGeslm~~~dp~~~~~~ 255 (695)
T PRK13802 200 KYNELAADLPDDVIKVAESGVFGAVEVEDYARAG-ADAVLVGEGVATADDHELAVER 255 (695)
T ss_pred HHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCC-CCEEEECHHhhCCCCHHHHHHH
Confidence 4455667664 367777999 999999999888 8999999999999996655543
No 244
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.68 E-value=1.1 Score=33.04 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=37.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+..+.+++.++..+|.+|.+ |+++++++++.| ++|+.-= -.||++.+..++
T Consensus 44 ~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG-A~FivSP---~~~~~vi~~a~~ 95 (201)
T PRK06015 44 DAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG-SRFIVSP---GTTQELLAAAND 95 (201)
T ss_pred HHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC-CCEEECC---CCCHHHHHHHHH
Confidence 45566777777788999999 999999999999 6765431 256666665443
No 245
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=88.53 E-value=1.2 Score=35.92 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=33.1
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
+.++.|++.+++|||+-|-+++++|+.+++.| +|.|.+
T Consensus 243 ~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~G-~d~I~v 280 (383)
T cd03332 243 EDLAFLREWTDLPIVLKGILHPDDARRAVEAG-VDGVVV 280 (383)
T ss_pred HHHHHHHHhcCCCEEEecCCCHHHHHHHHHCC-CCEEEE
Confidence 46678999999999998767999999999998 798876
No 246
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=88.49 E-value=0.61 Score=36.10 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=33.9
Q ss_pred HHHHHHHHcC------CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574 13 SLLLMRKAFK------GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 13 ~~~~ir~~~~------~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
..+.+++.++ ..++++|||+++.+.+....| +|++++|..+..
T Consensus 230 ~~~~~~~~l~~~g~~~~~ieaSGgI~~~~i~~~a~~g-vD~isvGs~~~~ 278 (302)
T cd01571 230 LIREVRWALDIRGYKHVKIFVSGGLDEEDIKELEDVG-VDAFGVGTAISK 278 (302)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCCCCHHHHHHHHHcC-CCEEECCcccCC
Confidence 3455555541 369999999999999999988 899999987754
No 247
>PLN02979 glycolate oxidase
Probab=88.46 E-value=1.1 Score=35.98 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=33.0
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
+.++.+|+.|++|||+=|-.++++|+.+++.| +|.|.+
T Consensus 213 ~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~G-vd~I~V 250 (366)
T PLN02979 213 KDVQWLQTITKLPILVKGVLTGEDARIAIQAG-AAGIIV 250 (366)
T ss_pred HHHHHHHhccCCCEEeecCCCHHHHHHHHhcC-CCEEEE
Confidence 46778999999999997766999999999999 788776
No 248
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=88.33 E-value=1.2 Score=34.98 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=28.3
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.++.++|||+++.+.+....| +|+|++|...-
T Consensus 263 ~~lEaSGGIt~~ni~~yA~tG-VD~Is~Galth 294 (308)
T PLN02716 263 FETEASGNVTLDTVHKIGQTG-VTYISSGALTH 294 (308)
T ss_pred ceEEEECCCCHHHHHHHHHcC-CCEEEeCcccc
Confidence 379999999999999999888 89999997654
No 249
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.28 E-value=1 Score=35.84 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=29.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEE
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLV 48 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlV 48 (104)
+..+.||+.+....|.+|++ |++.+++++..| +|.|
T Consensus 140 ~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aG-AD~v 176 (346)
T PRK05096 140 QFVAKAREAWPDKTICAGNVVTGEMVEELILSG-ADIV 176 (346)
T ss_pred HHHHHHHHhCCCCcEEEecccCHHHHHHHHHcC-CCEE
Confidence 46678888887656777999 999999999999 6865
No 250
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=88.11 E-value=1.2 Score=35.73 Aligned_cols=37 Identities=32% Similarity=0.492 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
.++.|++.+++|||+-|=++.++|+.+++.| +|.|.+
T Consensus 236 di~~lr~~~~~pvivKgV~s~~dA~~a~~~G-vd~I~V 272 (381)
T PRK11197 236 DLEWIRDFWDGPMVIKGILDPEDARDAVRFG-ADGIVV 272 (381)
T ss_pred HHHHHHHhCCCCEEEEecCCHHHHHHHHhCC-CCEEEE
Confidence 3677999999999997777999999999999 798865
No 251
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=88.09 E-value=2.8 Score=32.07 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=40.2
Q ss_pred HHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 15 LLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 15 ~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
..+.+... ..+|.=+|| ++++.+.+...| +|.+.+|-.++.++|....++
T Consensus 198 ~~la~~~p~~~~~IsESGI~~~~dv~~l~~~g-a~a~LVG~slM~~~~~~~a~~ 250 (254)
T COG0134 198 EKLAPLIPKDVILISESGISTPEDVRRLAKAG-ADAFLVGEALMRADDPEEALR 250 (254)
T ss_pred HHHHhhCCCCcEEEecCCCCCHHHHHHHHHcC-CCEEEecHHHhcCCCHHHHHH
Confidence 34555554 367777999 899999998888 799999999999999866554
No 252
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=87.96 E-value=0.78 Score=36.65 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=40.4
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhC-CcHHHHHhh
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLAN-PDLPRRFEF 66 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lan-Pdl~~ri~~ 66 (104)
+.+.+.+.+. +|+|.+||+ |..+|-+-+..| +.+|-+...|.-+ |-++.||+.
T Consensus 320 ~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraG-ASlvQlyTal~yeGp~i~~kIk~ 376 (398)
T KOG1436|consen 320 TVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAG-ASLVQLYTALVYEGPAIIEKIKR 376 (398)
T ss_pred HHHHHHHhccCCCceEeecCccccHhHHHHHhcC-chHHHHHHHHhhcCchhHHHHHH
Confidence 3344444443 599999999 999998888899 6899888888765 667777765
No 253
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=87.58 E-value=1.2 Score=33.43 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=31.5
Q ss_pred CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
+..++++||++++.++.....| +|++++|..+.+.|
T Consensus 239 ~~~i~~Sggi~~~~i~~~~~~g-vd~~gvG~~~~~~~ 274 (281)
T cd00516 239 RVKIEASGGLDEENIRAYAETG-VDVFGVGTLLHSAP 274 (281)
T ss_pred ceEEEEeCCCCHHHHHHHHHcC-CCEEEeCcccccCc
Confidence 3479999999999999998888 89999999988873
No 254
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=87.48 E-value=1.2 Score=35.12 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=30.9
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
+..+.||+.++.+.+.+|.+ |++.|..+++.| +|+|-+|
T Consensus 129 e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aG-ad~i~vg 168 (326)
T PRK05458 129 NMIQHIKKHLPETFVIAGNVGTPEAVRELENAG-ADATKVG 168 (326)
T ss_pred HHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcC-cCEEEEC
Confidence 46778999987555556777 999999999999 7987654
No 255
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=87.41 E-value=1.4 Score=36.55 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=31.1
Q ss_pred hHHHHHHHHcCC-eEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKG-TFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~-pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+..+.+|+.++. ..|.+|.+ |++.|+.+++.| +|+|-+
T Consensus 272 ~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG-Ad~I~v 311 (502)
T PRK07107 272 RTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG-ADFVKV 311 (502)
T ss_pred HHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC-CCEEEE
Confidence 467789998875 56777888 999999999999 698733
No 256
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=87.38 E-value=1.4 Score=36.37 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=29.1
Q ss_pred hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
+..+.||+.+ +.|||+ |++ |.+.++++++.| +|.|-
T Consensus 255 ~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G-~d~i~ 292 (475)
T TIGR01303 255 SAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAG-ANIIK 292 (475)
T ss_pred HHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhC-CCEEE
Confidence 4667788877 468888 655 999999999999 79876
No 257
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=87.35 E-value=1.1 Score=35.56 Aligned_cols=42 Identities=33% Similarity=0.327 Sum_probs=34.6
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.+..+-+.++ +||+.-||+ +..+.-++|.=| +-.|.+|||++
T Consensus 267 ~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALG-Ak~VfiGRP~v 311 (363)
T KOG0538|consen 267 ALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALG-AKGVFIGRPIV 311 (363)
T ss_pred HHHHHHHHhcCceEEEEecCcccchHHHHHHhcc-cceEEecCchh
Confidence 3445556665 499999999 888999999988 79999999987
No 258
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=87.16 E-value=1.8 Score=33.31 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=37.5
Q ss_pred chHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.+..+.+|++.+.|+...=|| ++++++++.+. +|.|.+|..++
T Consensus 194 ~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVIVGSAiV 237 (265)
T COG0159 194 KELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVIVGSAIV 237 (265)
T ss_pred HHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEEEcHHHH
Confidence 457788999999999998899 99999999876 89999998865
No 259
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.95 E-value=1.9 Score=33.30 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=28.6
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
..+.++|||+++.+++....| +|+|++|...-
T Consensus 232 ~~leaSGGI~~~ni~~yA~tG-vD~Is~galt~ 263 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLD-VDVISLGALTH 263 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcC-CCEEEeChhhc
Confidence 469999999999999999988 89999998665
No 260
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=86.93 E-value=1 Score=34.10 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=39.3
Q ss_pred CcchHHHHHHHHcC---------CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574 9 ECPHSLLLMRKAFK---------GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR 62 (104)
Q Consensus 9 ~~~~~~~~ir~~~~---------~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ 62 (104)
+++...+.||+.+. .+|+..|+++++.+.+++..-.+|-+.+|+.-+.=.+|..
T Consensus 181 ~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~~f~~ 243 (250)
T PRK00042 181 QAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKAEDFLA 243 (250)
T ss_pred HHHHHHHHHHHHHHHhcccccCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeechHHHHH
Confidence 33444455665432 4788888889999999999888999999999883334433
No 261
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=86.69 E-value=1.4 Score=31.42 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=26.7
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
..+.++|||+++.+.+....| +|.+++|...
T Consensus 128 v~ie~SGGI~~~ni~~ya~~g-vD~isvg~~~ 158 (169)
T PF01729_consen 128 VKIEASGGITLENIAEYAKTG-VDVISVGSLT 158 (169)
T ss_dssp SEEEEESSSSTTTHHHHHHTT--SEEEECHHH
T ss_pred EEEEEECCCCHHHHHHHHhcC-CCEEEcChhh
Confidence 578899999999999999988 8999999753
No 262
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=86.65 E-value=1.7 Score=32.28 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=34.1
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+..+.+++..+.||++.+++ ++.++.++++++.+|+|.+
T Consensus 170 ~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~ 209 (265)
T cd03315 170 EGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNI 209 (265)
T ss_pred HHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEE
Confidence 35567888889999999988 9999999999999999876
No 263
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=86.56 E-value=1.7 Score=35.94 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=29.3
Q ss_pred hHHHHHHHHcCC-eEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKG-TFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~-pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+..+.||+.+.. +||+ |++ |++.|+.+++.| +|+|-+
T Consensus 271 ~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aG-ad~I~v 309 (495)
T PTZ00314 271 DMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAG-ADGLRI 309 (495)
T ss_pred HHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcC-CCEEEE
Confidence 467788888754 5555 777 999999999999 799853
No 264
>PLN02561 triosephosphate isomerase
Probab=86.51 E-value=1.6 Score=33.16 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=35.6
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
++++..|+++++.+.+++....+|-+.+|+.-|. |+|..-+.
T Consensus 205 i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~-~~F~~ii~ 246 (253)
T PLN02561 205 TRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 246 (253)
T ss_pred ceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH-HHHHHHHH
Confidence 4788888889999999999888999999999997 67766543
No 265
>PRK06801 hypothetical protein; Provisional
Probab=86.50 E-value=2.2 Score=32.94 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=36.8
Q ss_pred hHHHHHHHHcCCeEEEeCC--CCHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGG--YDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Gg--i~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+.++.+++.++.|+.+-|| ++.+++.++++.| ++-|.+++.+.
T Consensus 193 e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~G-i~KINv~T~~~ 237 (286)
T PRK06801 193 ARLAAIHQQTGLPLVLHGGSGISDADFRRAIELG-IHKINFYTGMS 237 (286)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEehhHHH
Confidence 5667788888899999999 7999999999999 78999887664
No 266
>PLN02535 glycolate oxidase
Probab=86.46 E-value=1.6 Score=34.89 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=33.0
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g 51 (104)
+.++.+|+.+++|||+-|=+++++|+.+++.| +|.|.++
T Consensus 213 ~~i~~lr~~~~~PvivKgV~~~~dA~~a~~~G-vD~I~vs 251 (364)
T PLN02535 213 KDIEWLRSITNLPILIKGVLTREDAIKAVEVG-VAGIIVS 251 (364)
T ss_pred HHHHHHHhccCCCEEEecCCCHHHHHHHHhcC-CCEEEEe
Confidence 35677999999999997767999999999988 7998773
No 267
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=86.40 E-value=0.62 Score=35.51 Aligned_cols=47 Identities=23% Similarity=0.304 Sum_probs=38.4
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl 60 (104)
+.++.+|+..+.||++.+|+|++.+.+.++ .+|.+.+|..|=.|=.|
T Consensus 190 ~~l~~vr~~~~~PVlvGSGvt~~Ni~~~l~--~ADG~IVGS~~K~~G~~ 236 (254)
T PF03437_consen 190 EKLKRVREAVPVPVLVGSGVTPENIAEYLS--YADGAIVGSYFKKDGKW 236 (254)
T ss_pred HHHHHHHhcCCCCEEEecCCCHHHHHHHHH--hCCEEEEeeeeeeCCEe
Confidence 456789999999999999999999999996 37999999877644433
No 268
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=86.40 E-value=1.7 Score=35.62 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=30.7
Q ss_pred hHHHHHHHHc-CCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAF-KGTFLVAGGYDREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~-~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g 51 (104)
+..+.|++.+ +.|||+.+..|+++|..+++.| +|+|.+|
T Consensus 258 ~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aG-ad~i~vg 297 (486)
T PRK05567 258 DRVREIKAKYPDVQIIAGNVATAEAARALIEAG-ADAVKVG 297 (486)
T ss_pred HHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcC-CCEEEEC
Confidence 4667788888 6688884444999999999998 7998653
No 269
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=86.35 E-value=1.7 Score=34.82 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
.++.+|+.|++|||+=|-.++++|+.+++.| +|.|.+
T Consensus 215 di~wlr~~~~~PiivKgV~~~~dA~~a~~~G-vd~I~V 251 (367)
T PLN02493 215 DVQWLQTITKLPILVKGVLTGEDARIAIQAG-AAGIIV 251 (367)
T ss_pred HHHHHHhccCCCEEeecCCCHHHHHHHHHcC-CCEEEE
Confidence 5678999999999987766999999999999 788877
No 270
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.23 E-value=2.3 Score=32.87 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=28.4
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.++.++|||+++.+++....| +|+|++|...-
T Consensus 239 ~~leaSGGI~~~ni~~yA~tG-VD~Is~Galth 270 (281)
T PRK06106 239 AITEASGRITPETAPAIAASG-VDLISVGWLTH 270 (281)
T ss_pred ceEEEECCCCHHHHHHHHhcC-CCEEEeChhhc
Confidence 489999999999999999888 89999997554
No 271
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=86.21 E-value=1.6 Score=33.68 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=34.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
.....+++..+.||++..++ ++++++++++++.+|+|.+
T Consensus 230 ~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~ 269 (357)
T cd03316 230 EGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQP 269 (357)
T ss_pred HHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEec
Confidence 35567888888999999988 9999999999999999865
No 272
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=85.55 E-value=2.3 Score=33.17 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=29.1
Q ss_pred hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+..+.+|+... .+||+ |.+ +++.|+.+++.| +|+|.+
T Consensus 124 ~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aG-aD~I~v 162 (325)
T cd00381 124 EMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAG-ADGVKV 162 (325)
T ss_pred HHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcC-CCEEEE
Confidence 45667777764 56766 777 999999999998 799875
No 273
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.20 E-value=2.3 Score=31.45 Aligned_cols=51 Identities=24% Similarity=0.288 Sum_probs=38.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+..+.+++.++..+|.+|.+ +.++++.+++.| +||+..= -.||++.+..++
T Consensus 55 ~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG-A~FivsP---~~~~~vi~~a~~ 106 (212)
T PRK05718 55 EAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG-AQFIVSP---GLTPPLLKAAQE 106 (212)
T ss_pred HHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC-CCEEECC---CCCHHHHHHHHH
Confidence 45677888887788999999 999999999999 6876541 355666665544
No 274
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=85.10 E-value=1.8 Score=35.10 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=30.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
+..+.+|+.+....+..|++ |++.|+.+++.| +|.|.+|
T Consensus 183 ~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aG-aD~I~vG 222 (404)
T PRK06843 183 ELVKKIKTKYPNLDLIAGNIVTKEAALDLISVG-ADCLKVG 222 (404)
T ss_pred HHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcC-CCEEEEC
Confidence 56778888885433445666 999999999999 7998655
No 275
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=85.06 E-value=2.2 Score=31.83 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=38.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh-CCCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF-NAPLN 71 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~-g~~l~ 71 (104)
+..+.+++.+..-+|.+|-+ ++++++++++.| ++||.- =-.||++++.... |.++.
T Consensus 53 e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aG-a~fiVs---P~~~~ev~~~a~~~~ip~~ 110 (211)
T COG0800 53 EAIRALAKEFPEALIGAGTVLNPEQARQAIAAG-AQFIVS---PGLNPEVAKAANRYGIPYI 110 (211)
T ss_pred HHHHHHHHhCcccEEccccccCHHHHHHHHHcC-CCEEEC---CCCCHHHHHHHHhCCCccc
Confidence 56677788888789999999 999999999999 576532 0145555554433 44443
No 276
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.02 E-value=1.7 Score=33.73 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=28.5
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
..+.++|||+++.+.+....| +|+|++|...-
T Consensus 247 v~ieaSGGI~~~ni~~yA~tG-vD~Is~galt~ 278 (289)
T PRK07896 247 VLLESSGGLTLDTAAAYAETG-VDYLAVGALTH 278 (289)
T ss_pred EEEEEECCCCHHHHHHHHhcC-CCEEEeChhhc
Confidence 479999999999999999888 89999998665
No 277
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=84.68 E-value=0.51 Score=36.08 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=31.8
Q ss_pred HHHHHHcCCeEEEeCCC--CHHHH-HHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 15 LLMRKAFKGTFLVAGGY--DREDG-NKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 15 ~~ir~~~~~pvi~~Ggi--~~~~a-e~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
....+. ...||++||+ |.++. .+++. =++||++..||++.+.+..
T Consensus 55 ~~a~~r-~D~vI~tGGLGPT~DDiT~e~vA------ka~g~~lv~~~~al~~i~~ 102 (255)
T COG1058 55 REASER-ADVVITTGGLGPTHDDLTAEAVA------KALGRPLVLDEEALAMIEE 102 (255)
T ss_pred HHHHhC-CCEEEECCCcCCCccHhHHHHHH------HHhCCCcccCHHHHHHHHH
Confidence 333333 3589999999 77765 23332 2588999999999988765
No 278
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.15 E-value=2.9 Score=32.32 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=29.1
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
.+.++|||+++.+.+....| +|+|+.|...-+=|
T Consensus 239 ~leaSGgI~~~ni~~yA~tG-VD~Is~galths~~ 272 (281)
T PRK06543 239 IVEASGNVNLNTVGAIASTG-VDVISVGALTHSVR 272 (281)
T ss_pred EEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCc
Confidence 79999999999999999888 89999997654433
No 279
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=84.12 E-value=2 Score=31.42 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=36.4
Q ss_pred HHHHHHc-CCeEEEeCCCCHH----------HHHHHHHcCCCcEEecchHHhhCCcHHHH
Q 046574 15 LLMRKAF-KGTFLVAGGYDRE----------DGNKAIAEGRADLVVYGRFFLANPDLPRR 63 (104)
Q Consensus 15 ~~ir~~~-~~pvi~~Ggi~~~----------~ae~~l~~g~~DlVa~gR~~lanPdl~~r 63 (104)
..+++.. ...++++.||.++ ..++++..| +|++.+||+.+..++-...
T Consensus 154 ~~i~~~~~~~~~~ltPGI~~~~~~~dq~r~~~~~~a~~~g-~~~ivvGR~I~~a~~p~~~ 212 (216)
T cd04725 154 EALRRALGPDFLILTPGIGAQGSGDDQKRGGTPEDAIRAG-ADYIVVGRPITQAADPVAA 212 (216)
T ss_pred HHHHHhhCCCCeEEcCCcCCCCCccccccccCHHHHHHcC-CcEEEEChhhccCCCHHHH
Confidence 3444444 3457999999655 788899888 8999999999999885443
No 280
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=83.59 E-value=1.4 Score=30.50 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=24.4
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~g 51 (104)
+|+++|.++++-+.+++..| +|.|.++
T Consensus 34 rv~CsGrvn~~fvl~Al~~G-aDGV~v~ 60 (132)
T COG1908 34 RVMCSGRVNPEFVLKALRKG-ADGVLVA 60 (132)
T ss_pred EeeccCccCHHHHHHHHHcC-CCeEEEe
Confidence 79999999999999999998 7988774
No 281
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.21 E-value=3.3 Score=30.52 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=39.1
Q ss_pred hHHHHHHHHcC---CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh-CCCC
Q 046574 12 HSLLLMRKAFK---GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF-NAPL 70 (104)
Q Consensus 12 ~~~~~ir~~~~---~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~-g~~l 70 (104)
+..+.+++.+. ..+|.+|.+ |+++++++++.| ++|+. -| -.||++.+..++ |.++
T Consensus 53 ~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aG-A~Fiv--sP-~~~~~v~~~~~~~~i~~ 112 (213)
T PRK06552 53 EVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAG-AQFIV--SP-SFNRETAKICNLYQIPY 112 (213)
T ss_pred HHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcC-CCEEE--CC-CCCHHHHHHHHHcCCCE
Confidence 45667777774 358899999 999999999999 68766 22 456777665544 4443
No 282
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=83.17 E-value=2.8 Score=33.41 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=32.6
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl 60 (104)
++|+..|+++++.+.+++....+|-+.+|+.-+.-.+|
T Consensus 214 v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~~f 251 (355)
T PRK14905 214 IPVLYGGSVNLENANELIMKPHIDGLFIGRSAWDAQCF 251 (355)
T ss_pred eeEEEeCcCCHHHHHHHhcCCCCCEEEechhhccHHHH
Confidence 47888888899999999999889999999999944445
No 283
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=83.13 E-value=2.2 Score=34.66 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=29.8
Q ss_pred hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
+..+.||+.+ +.|||+ |++ |++.|+.+++.| +|+|-+|
T Consensus 254 ~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aG-ad~i~vg 293 (450)
T TIGR01302 254 DSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAG-ADGLRVG 293 (450)
T ss_pred HHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhC-CCEEEEC
Confidence 4667788886 567877 555 999999999999 7998533
No 284
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.84 E-value=3.7 Score=31.96 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=28.3
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
..+.++|||+++.+.+....| +|+|++|...-
T Consensus 242 ~~leaSGGI~~~ni~~yA~tG-VD~Is~galth 273 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLA-IDYVSSGSLTH 273 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcC-CCEEEeCcccc
Confidence 478999999999999999888 89999997654
No 285
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=82.64 E-value=4.1 Score=32.47 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=37.3
Q ss_pred chHHHHHHHHcC------CeEEEeCCCCHHHHHHHHHcCC-CcEEecchHHhhC
Q 046574 11 PHSLLLMRKAFK------GTFLVAGGYDREDGNKAIAEGR-ADLVVYGRFFLAN 57 (104)
Q Consensus 11 ~~~~~~ir~~~~------~pvi~~Ggi~~~~ae~~l~~g~-~DlVa~gR~~lan 57 (104)
+...+.+|+.++ +.++++|||+++.+++..++|. +|..++|..++..
T Consensus 263 ~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~ 316 (352)
T PRK07188 263 PELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI 316 (352)
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence 345566666552 3599999999999999988875 8999999988874
No 286
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=82.48 E-value=3.5 Score=32.73 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=32.1
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
+.++.+++.+++||++=|-.+++.|+.+++.| +|.|.+
T Consensus 211 ~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~G-~d~I~v 248 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGIQSPEDADVAINAG-ADGIWV 248 (351)
T ss_pred HHHHHHHHHhCCcEEEecCCCHHHHHHHHHcC-CCEEEE
Confidence 35567999999999988645999999999988 799877
No 287
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=82.35 E-value=3.9 Score=31.92 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=29.6
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
..+.++|||+++.+.+....| +|+|++|...-+-|
T Consensus 250 ~~lEaSGGIt~~ni~~yA~tG-VD~IS~galthsa~ 284 (294)
T PRK06978 250 AVLEVSGGVNFDTVRAFAETG-VDRISIGALTKDVR 284 (294)
T ss_pred eEEEEECCCCHHHHHHHHhcC-CCEEEeCccccCCc
Confidence 478899999999999999888 89999997655444
No 288
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=82.18 E-value=1.8 Score=33.37 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=29.1
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
..|.++|||+++.+.+....| +|+|+.|-+.-+-|
T Consensus 236 ~~leasGGI~~~ni~~ya~~G-vD~is~gal~~a~~ 270 (277)
T TIGR01334 236 PTLAAAGGINPENIADYIEAG-IDLFITSAPYYAAP 270 (277)
T ss_pred EEEEEECCCCHHHHHHHHhcC-CCEEEeCcceecCc
Confidence 378999999999999999988 89999986654433
No 289
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=82.15 E-value=3.7 Score=31.39 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=32.2
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
+..+.+++.+++||++-+-.+++.|+.+.+.| +|.|.+
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G-~d~I~v 199 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVDAG-ADGIVV 199 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHHCC-CCEEEE
Confidence 46778899989999988766999999999988 788866
No 290
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=81.77 E-value=2.9 Score=33.13 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=32.6
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g 51 (104)
+..+.+++.+++|||+=|=+++++|..+++.| +|.|-++
T Consensus 215 ~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G-~~~i~vs 253 (356)
T PF01070_consen 215 DDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAG-VDGIDVS 253 (356)
T ss_dssp HHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT--SEEEEE
T ss_pred HHHHHHhcccCCceEEEecccHHHHHHHHhcC-CCEEEec
Confidence 35778999999999999888999999999999 7887774
No 291
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=81.76 E-value=2.1 Score=32.60 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=35.2
Q ss_pred EEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 25 FLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 25 vi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
=+++||+ ||.+|.-.++-| ||-|.+|......+|=+.+.+.
T Consensus 212 ~FAaGGvaTPADAALmMQLG-CdGVFVGSgiFks~dP~k~a~a 253 (296)
T KOG1606|consen 212 NFAAGGVATPADAALMMQLG-CDGVFVGSGIFKSGDPVKRARA 253 (296)
T ss_pred EecccCcCChhHHHHHHHcC-CCeEEeccccccCCCHHHHHHH
Confidence 4678999 999998888888 9999999999998887777654
No 292
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=81.71 E-value=2.4 Score=33.80 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=28.9
Q ss_pred hHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+..+.+|+.++ .+|| +|++ |++.++.+++.| +|.|=+
T Consensus 138 ~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aG-ad~vkV 176 (352)
T PF00478_consen 138 DMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAG-ADAVKV 176 (352)
T ss_dssp HHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT--SEEEE
T ss_pred HHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcC-CCEEEE
Confidence 46678888887 5666 5788 999999999999 797544
No 293
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=81.42 E-value=3.8 Score=31.22 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=33.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+....+++..++||++.+.+ +++++.++++++.+|.|.+
T Consensus 218 ~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~ 257 (316)
T cd03319 218 DGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINI 257 (316)
T ss_pred HHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEE
Confidence 35567888888999999988 9999999999999998865
No 294
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=81.33 E-value=4.8 Score=27.65 Aligned_cols=39 Identities=33% Similarity=0.376 Sum_probs=30.0
Q ss_pred hHHHHHHHHc--CCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAF--KGTFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~--~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
.....+++.. +.++++.||+ +++.+.+++..| ++.+.+|
T Consensus 160 ~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~G-a~g~~~g 201 (201)
T cd00945 160 EDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAG-ADGIGTS 201 (201)
T ss_pred HHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhc-cceeecC
Confidence 3445677776 4589999999 699999999888 7877764
No 295
>PRK15492 triosephosphate isomerase; Provisional
Probab=81.21 E-value=2.9 Score=31.93 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=32.6
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR 62 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ 62 (104)
.+|+..|+++++.+.+++....+|-+.+||.-+-=-+|..
T Consensus 213 irILYGGSV~~~N~~~l~~~~diDG~LvG~aSl~~~~F~~ 252 (260)
T PRK15492 213 IPVFYGGSVNAENANELFGQPHIDGLFIGRSAWDADKFFA 252 (260)
T ss_pred eeEEEcCccCHHHHHHHhcCCCCCEEEeehhhcCHHHHHH
Confidence 4788888889999999999999999999998774333433
No 296
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=81.21 E-value=2.5 Score=30.95 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=27.3
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
..+.+-||++.+.+..+.+.| +|.+..|+.+..
T Consensus 167 ~~I~vDGGI~~~~~~~~~~aG-ad~~V~Gs~iF~ 199 (201)
T PF00834_consen 167 FEIEVDGGINEENIKQLVEAG-ADIFVAGSAIFK 199 (201)
T ss_dssp SEEEEESSESTTTHHHHHHHT---EEEESHHHHT
T ss_pred eEEEEECCCCHHHHHHHHHcC-CCEEEECHHHhC
Confidence 468888999999999999999 799999988764
No 297
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.98 E-value=2.5 Score=31.52 Aligned_cols=41 Identities=29% Similarity=0.401 Sum_probs=30.6
Q ss_pred CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+..++.+|.+ |+++++++++.| ++|+.-= -.||++.+..++
T Consensus 69 p~~~vGaGTVl~~e~a~~a~~aG-A~FiVsP---~~~~~v~~~~~~ 110 (222)
T PRK07114 69 PGMILGVGSIVDAATAALYIQLG-ANFIVTP---LFNPDIAKVCNR 110 (222)
T ss_pred CCeEEeeEeCcCHHHHHHHHHcC-CCEEECC---CCCHHHHHHHHH
Confidence 3468999999 999999999999 6775431 257777766554
No 298
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=80.61 E-value=4.4 Score=32.03 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=31.6
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
+..+.+++.+++|||+-|-.++++|+.+.+.| +|.|.+
T Consensus 203 ~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G-~d~I~v 240 (344)
T cd02922 203 DDIKWLRKHTKLPIVLKGVQTVEDAVLAAEYG-VDGIVL 240 (344)
T ss_pred HHHHHHHHhcCCcEEEEcCCCHHHHHHHHHcC-CCEEEE
Confidence 35677999999999988655999999999888 788775
No 299
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=79.90 E-value=5.2 Score=31.24 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=28.3
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
..+.++|||+++.+.+....| +|+|++|...-+
T Consensus 253 ~~ieaSGGI~~~ni~~yA~tG-VD~Is~galths 285 (296)
T PRK09016 253 ALLEVSGNVTLETLREFAETG-VDFISVGALTKH 285 (296)
T ss_pred eEEEEECCCCHHHHHHHHhcC-CCEEEeCccccC
Confidence 478999999999999999888 799999975443
No 300
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=79.86 E-value=3.8 Score=32.69 Aligned_cols=42 Identities=31% Similarity=0.493 Sum_probs=33.1
Q ss_pred CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
++|||+-||| ..-++-++|.-| +|+|.+|..|....+-|-++
T Consensus 212 ~v~VIaDGGIr~~gDI~KALA~G-Ad~VMlG~llAG~~Espg~~ 254 (343)
T TIGR01305 212 KGHIISDGGCTCPGDVAKAFGAG-ADFVMLGGMFAGHTESGGEV 254 (343)
T ss_pred CCeEEEcCCcCchhHHHHHHHcC-CCEEEECHhhhCcCcCccee
Confidence 4699999999 777888999888 79999996666655555443
No 301
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=79.79 E-value=4.4 Score=32.05 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=28.9
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
..++++|||+.+.+.+.... +|.+++|..+.+.|
T Consensus 262 v~IeaSGgI~~~ni~~ya~~--vD~isvGs~~~~a~ 295 (343)
T PRK08662 262 VKIFVSGGLDPERIRELRDV--VDGFGVGTYISFAP 295 (343)
T ss_pred eEEEEeCCCCHHHHHHHHHh--CCEEEcCccccCCC
Confidence 36899999999999888876 99999999887644
No 302
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=79.03 E-value=2.6 Score=35.49 Aligned_cols=57 Identities=16% Similarity=0.052 Sum_probs=42.8
Q ss_pred HHHHHHcC--CeEEEeCCC-CHHH-HHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCC
Q 046574 15 LLMRKAFK--GTFLVAGGY-DRED-GNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLN 71 (104)
Q Consensus 15 ~~ir~~~~--~pvi~~Ggi-~~~~-ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~ 71 (104)
..+.+..+ .|||.+|.| +-++ ++.+-+...+|-|.+||+.|.-|=+-..|++-+.+.
T Consensus 445 ~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD 505 (614)
T KOG2333|consen 445 EECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWD 505 (614)
T ss_pred HHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCC
Confidence 33444442 699999999 9887 666665566999999999999996667777766553
No 303
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=77.51 E-value=5 Score=30.65 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=36.6
Q ss_pred CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+++|+..|+++++.+.+++.+-.+|-+.+|++-|.=.||..-+.
T Consensus 202 ~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~ 245 (251)
T COG0149 202 KVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKADDFLAILE 245 (251)
T ss_pred CeEEEEeCCcChhHHHHHhcCCCCCeEEEcceeecchhHHHHHH
Confidence 45888888899999999998888999999999887777765543
No 304
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=76.68 E-value=7.4 Score=30.12 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=27.1
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
..+-++|||+++.+.+....| +|+|+.|-..
T Consensus 237 ~~leaSGGI~~~ni~~yA~tG-vD~Is~gal~ 267 (284)
T PRK06096 237 CTLSLAGGINLNTLKNYADCG-IRLFITSAPY 267 (284)
T ss_pred eEEEEECCCCHHHHHHHHhcC-CCEEEECccc
Confidence 478899999999999999888 8999998653
No 305
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=76.13 E-value=5.4 Score=29.17 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=24.3
Q ss_pred HHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 16 LMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 16 ~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
.+++.+..|++++|||+|+..++++..-....|=+
T Consensus 148 ~l~~~~~~p~~LAGGi~peNv~~ai~~~~p~gvDv 182 (210)
T PRK01222 148 LLPAGLAKPWILAGGLNPDNVAEAIRQVRPYGVDV 182 (210)
T ss_pred HhhhccCCCEEEECCCCHHHHHHHHHhcCCCEEEe
Confidence 34233466999999999999999997523344433
No 306
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=75.33 E-value=6.1 Score=30.25 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=45.6
Q ss_pred HHHHHHHHcCC-eEEEeC-----C--CCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC-CCCCCccccccCCC
Q 046574 13 SLLLMRKAFKG-TFLVAG-----G--YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP-LNKYNRETFYVSDP 83 (104)
Q Consensus 13 ~~~~ir~~~~~-pvi~~G-----g--i~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~-l~~~d~~~~~~~~~ 83 (104)
.+..+|+.++. -||+|| | |++..++++++.| +|+|-.|--...++|+..-+..... +.|.+...-. +
T Consensus 18 ~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L~~~G-vDviT~GNH~wdkkei~~~i~~~~~ilRPaN~p~~~-p-- 93 (253)
T PF13277_consen 18 HLPELKEEYGIDFVIANGENAAGGFGITPKIAEELFKAG-VDVITMGNHIWDKKEIFDFIDKEPRILRPANYPPGT-P-- 93 (253)
T ss_dssp HHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHHHHHT--SEEE--TTTTSSTTHHHHHHH-SSEE--TTS-TT--S--
T ss_pred HHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHHHhcC-CCEEecCcccccCcHHHHHHhcCCCcEECCCCCCCC-C--
Confidence 45567777764 688875 3 4899999999999 8999999999999999988877443 3443333211 1
Q ss_pred CCCcccCCC
Q 046574 84 VVGYTDYPF 92 (104)
Q Consensus 84 ~~gy~d~p~ 92 (104)
..||.-|+.
T Consensus 94 G~G~~i~~~ 102 (253)
T PF13277_consen 94 GRGYRIFEK 102 (253)
T ss_dssp SBSEEEEEE
T ss_pred cCcEEEEEE
Confidence 356655543
No 307
>PRK14566 triosephosphate isomerase; Provisional
Probab=75.27 E-value=5.7 Score=30.41 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=41.0
Q ss_pred CcchHHHHHHHHc---------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 9 ECPHSLLLMRKAF---------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 9 ~~~~~~~~ir~~~---------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
++++....||+.+ +.+++-.|+++++.+.+++....+|-+.+|+.-|.=-+|..-+
T Consensus 190 ~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGgASL~~~~F~~Ii 254 (260)
T PRK14566 190 QAQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLNSTEFLSLC 254 (260)
T ss_pred HHHHHHHHHHHHHHhcCccccccceEEecCCCCHhHHHHHhcCCCCCeEEechHhcCHHHHHHHH
Confidence 3344455677643 2478887888999999999999999999999887544454433
No 308
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=75.23 E-value=8.5 Score=28.11 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=38.7
Q ss_pred hHHHHHHHHcCC-eEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAFKG-TFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~~~-pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+..+.+++.+.. .+|.+|.+ +.++++.+++.| +|++..+- .|+++.....
T Consensus 50 ~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aG-A~fivsp~---~~~~v~~~~~ 101 (206)
T PRK09140 50 DSIAALVKALGDRALIGAGTVLSPEQVDRLADAG-GRLIVTPN---TDPEVIRRAV 101 (206)
T ss_pred HHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcC-CCEEECCC---CCHHHHHHHH
Confidence 355667777775 58888999 999999999999 79998863 5667766554
No 309
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=74.70 E-value=7.7 Score=30.62 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=29.7
Q ss_pred hHHHHHHHHcCCeEEE--eC-CCCHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLV--AG-GYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~--~G-gi~~~~ae~~l~~g~~DlVa~ 50 (104)
+..+.+++.++.||++ +| +++.+.|+.+.+.| +|+|.+
T Consensus 176 e~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~G-vd~I~V 216 (352)
T PRK05437 176 DNIAEIVSALPVPVIVKEVGFGISKETAKRLADAG-VKAIDV 216 (352)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcC-CCEEEE
Confidence 3456688888889997 33 35999999999888 798876
No 310
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=74.67 E-value=9.8 Score=27.01 Aligned_cols=51 Identities=25% Similarity=0.416 Sum_probs=39.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
...+.+++.++...|.+|.+ +.++++.++..| +|+|..+- .++++.+..+.
T Consensus 44 ~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~G-a~~i~~p~---~~~~~~~~~~~ 95 (190)
T cd00452 44 EAIRALRKEFPEALIGAGTVLTPEQADAAIAAG-AQFIVSPG---LDPEVVKAANR 95 (190)
T ss_pred HHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcC-CCEEEcCC---CCHHHHHHHHH
Confidence 35667888776667788888 899999999988 79987763 46777776655
No 311
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=74.33 E-value=5.6 Score=29.68 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=26.2
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
.+++-+||++++.+.+.+..| +..|++|-.+
T Consensus 154 v~~~pTGGVs~~N~~~yla~g-v~avG~Gs~l 184 (211)
T COG0800 154 VRFCPTGGVSLDNAADYLAAG-VVAVGLGSWL 184 (211)
T ss_pred CeEeecCCCCHHHHHHHHhCC-ceEEecCccc
Confidence 479999999999999999999 7777776544
No 312
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=74.31 E-value=8.6 Score=30.84 Aligned_cols=38 Identities=18% Similarity=0.125 Sum_probs=30.5
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
+..+.|++.+++||++=|=.+++.|+.+++.| +|.|.+
T Consensus 218 ~~i~~l~~~~~~PvivKGv~~~eda~~a~~~G-vd~I~V 255 (367)
T TIGR02708 218 RDIEEIAGYSGLPVYVKGPQCPEDADRALKAG-ASGIWV 255 (367)
T ss_pred HHHHHHHHhcCCCEEEeCCCCHHHHHHHHHcC-cCEEEE
Confidence 35678999999999976533999999999998 787644
No 313
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=74.23 E-value=7.5 Score=29.08 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=39.2
Q ss_pred HHHHHHHcCCeEE-EeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574 14 LLLMRKAFKGTFL-VAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR 62 (104)
Q Consensus 14 ~~~ir~~~~~pvi-~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ 62 (104)
.+.+|+.+..+.| .-||++++.+..+.+.| ++++..|.+.+.-+|--.
T Consensus 160 V~~lR~kyp~l~ievDGGv~~~ti~~~a~AG-AN~iVaGsavf~a~d~~~ 208 (224)
T KOG3111|consen 160 VEWLREKYPNLDIEVDGGVGPSTIDKAAEAG-ANMIVAGSAVFGAADPSD 208 (224)
T ss_pred HHHHHHhCCCceEEecCCcCcchHHHHHHcC-CCEEEecceeecCCCHHH
Confidence 4568888877777 77999999999999999 799999988887766543
No 314
>PRK05377 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=74.09 E-value=5 Score=31.35 Aligned_cols=33 Identities=21% Similarity=0.519 Sum_probs=28.2
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
.|.++||++.++|.+.|....-=+.+|.|++.-
T Consensus 236 vVaLSGGysr~eA~~~L~~n~g~iASfSRal~e 268 (296)
T PRK05377 236 VVALSGGYSRDEANELLARNHGLIASFSRALTE 268 (296)
T ss_pred EEEccCCcCHHHHHHHHhhCCCcEEEehHHhhC
Confidence 588889999999999999877678889998763
No 315
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=73.85 E-value=5.3 Score=33.00 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=34.6
Q ss_pred hHHHHHHHHcC-CeEEEeCCC-C---HHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574 12 HSLLLMRKAFK-GTFLVAGGY-D---REDGNKAIAEGRADLVVYGRFFLANPDL 60 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi-~---~~~ae~~l~~g~~DlVa~gR~~lanPdl 60 (104)
...+.+.+... +|||++|+. + ..+.+.....-..|.|.++|...+||..
T Consensus 198 ~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~Si 251 (477)
T KOG2334|consen 198 DYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSI 251 (477)
T ss_pred HHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCce
Confidence 44455556566 799999998 6 3344444444447999999999999964
No 316
>PLN02429 triosephosphate isomerase
Probab=73.22 E-value=4.4 Score=31.92 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=34.2
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
++|+..|+++++.+.+++..-.+|-+.+|+.-|--++|..-+
T Consensus 264 irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~~~F~~Ii 305 (315)
T PLN02429 264 TRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIV 305 (315)
T ss_pred ceEEEcCccCHHHHHHHhcCCCCCEEEeecceecHHHHHHHH
Confidence 478888888999999999888899999999998444555443
No 317
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=72.88 E-value=5.5 Score=29.54 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=26.3
Q ss_pred cCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574 21 FKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 21 ~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
...|+|++||++|+.++++++.+.-..|=+..+.
T Consensus 153 ~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGV 186 (208)
T COG0135 153 LSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGV 186 (208)
T ss_pred ccCCEEEECCCCHHHHHHHHHhcCCceEEecccc
Confidence 4568999999999999999998754555554443
No 318
>cd00949 FBP_aldolase_I_bact Fructose-1.6-bisphosphate aldolase found in gram +/- bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). The enzyme is member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=71.69 E-value=6.1 Score=30.85 Aligned_cols=33 Identities=24% Similarity=0.544 Sum_probs=27.9
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
.|-++||++.++|++.|....-=+.+|.|++.-
T Consensus 233 vvalsggysr~~a~~~l~~n~g~iasfsral~e 265 (292)
T cd00949 233 VVALSGGYSREEANELLAKNNGVIASFSRALTE 265 (292)
T ss_pred EEEcCCCcCHHHHHHHHhhCCCcEEEehHHhhC
Confidence 577889999999999999877677889998763
No 319
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=71.29 E-value=9 Score=27.57 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=29.0
Q ss_pred hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
+..+.+++.++ .+|-++||+ |.+++.+.++.| +|.++
T Consensus 162 ~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g-~~riG 201 (203)
T cd00959 162 EDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAG-ATRIG 201 (203)
T ss_pred HHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhC-hhhcc
Confidence 34456777664 589999999 999999999988 56655
No 320
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=71.29 E-value=21 Score=27.18 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=37.3
Q ss_pred chHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHcCCCc-EEecchHHhhCCcHHHHH
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY-----DREDGNKAIAEGRAD-LVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi-----~~~~ae~~l~~g~~D-lVa~gR~~lanPdl~~ri 64 (104)
++.+..+|+.+..-.|++=|| ++++...++.....| +|.+||+.+..+|-...+
T Consensus 198 p~e~~~iR~~~~~~~il~PGigaqG~~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~ 257 (261)
T TIGR02127 198 PGDLLRLRIEMPTAPFLVPGFGAQGAEAADLRGLFGADGSGLLINSSRGVLFAGPRSSAL 257 (261)
T ss_pred HHHHHHHHHhCCCCeEEeCCcCCCCCCHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHH
Confidence 456778888876556777777 366666656543457 899999988877654443
No 321
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=70.63 E-value=6.9 Score=28.90 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecch
Q 046574 13 SLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGR 52 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR 52 (104)
..+.+++.+. .+|-++||| |.+++.+.++.| +|-++...
T Consensus 164 dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aG-a~riGts~ 205 (211)
T TIGR00126 164 DVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAG-ASRIGASA 205 (211)
T ss_pred HHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHh-hHHhCcch
Confidence 4456777765 589999999 999999999988 67776643
No 322
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=70.44 E-value=2.6 Score=31.76 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=38.4
Q ss_pred CcchHHHHHHHHc----------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574 9 ECPHSLLLMRKAF----------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60 (104)
Q Consensus 9 ~~~~~~~~ir~~~----------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl 60 (104)
++.+..+.||+.+ +.+++..|+++++.+.+++..-.+|-+.+|+.-|.--+|
T Consensus 179 ~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~asl~~~~F 240 (244)
T PF00121_consen 179 QIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGASLKAESF 240 (244)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGGGGSTHHH
T ss_pred HHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchhhhcccch
Confidence 3344555676653 468888888999999999998889999999987744334
No 323
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=68.53 E-value=14 Score=28.88 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=29.9
Q ss_pred hHHHHHHHHcCCeEEE--eCC-CCHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAFKGTFLV--AGG-YDREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~--~Gg-i~~~~ae~~l~~g~~DlVa~g 51 (104)
+..+.+++.++.||++ +|. .+.+.|+.+.+.| +|+|.++
T Consensus 169 e~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aG-vd~I~Vs 210 (333)
T TIGR02151 169 EKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAG-VSAIDVA 210 (333)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcC-CCEEEEC
Confidence 4566788888899987 333 4899999998888 6887774
No 324
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=68.26 E-value=6.4 Score=29.01 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=29.1
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
.+|+..|+++++.+.+++..-.+|-+.+|+.-|
T Consensus 170 ~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl 202 (205)
T TIGR00419 170 VRVLCGAGISTGEDAELAAQLGAEGVLLASGSL 202 (205)
T ss_pred ceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeee
Confidence 478888888999999999988899999998766
No 325
>PRK01254 hypothetical protein; Provisional
Probab=68.17 E-value=7.3 Score=33.89 Aligned_cols=59 Identities=17% Similarity=0.410 Sum_probs=45.4
Q ss_pred HHHHHHHHcCC-eEEEeCCCCHHH-------------HHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCC
Q 046574 13 SLLLMRKAFKG-TFLVAGGYDRED-------------GNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNK 72 (104)
Q Consensus 13 ~~~~ir~~~~~-pvi~~Ggi~~~~-------------ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~ 72 (104)
....+|+.+.+ |||+ |||.+.- -+.+|.+..+|++.+|-+=.+=++++.++..|.++..
T Consensus 139 y~~~~r~~f~~~pvil-GGieaSlrR~aHYDyWsdkvr~sil~d~~aD~lvyGmgE~~i~e~a~~l~~g~~~~~ 211 (707)
T PRK01254 139 YTQRCKEAYKDVPVIL-GGIEASLRRIAHYDYWSDKVRRSVLVDAKADILMYGNAERPLVEVAHRLAMGEPISE 211 (707)
T ss_pred HHHHHHHHCCCCCEEe-ccccHHhhhhhhcchhhcccchhhcccCCCCEEEECccHHHHHHHHHHHHcCCChhh
Confidence 55779998875 6666 7773222 3667777889999999888888899999999998744
No 326
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=68.17 E-value=14 Score=28.69 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=29.2
Q ss_pred hHHHHHHHHcCCeEEEe--CC-CCHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVA--GG-YDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~--Gg-i~~~~ae~~l~~g~~DlVa~ 50 (104)
+.++.+++.++.||++= |. .+.+.|..+.+.| +|.|.+
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~G-vd~I~v 208 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGFGISRETAKRLADAG-VKAIDV 208 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcC-CCEEEE
Confidence 34566778888899883 32 5899999998888 788876
No 327
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=67.23 E-value=4.3 Score=29.21 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=21.1
Q ss_pred CCeEEEeCCCCHHHHHHHHHcCCCcEEecch
Q 046574 22 KGTFLVAGGYDREDGNKAIAEGRADLVVYGR 52 (104)
Q Consensus 22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR 52 (104)
+.|+|++||++|+...++++.-....|=+..
T Consensus 147 ~~p~iLAGGl~p~NV~~ai~~~~p~gvDvsS 177 (197)
T PF00697_consen 147 PKPVILAGGLNPENVREAIRQVRPYGVDVSS 177 (197)
T ss_dssp TSTEEEESS--TTTHHHHHHHC--SEEEESG
T ss_pred cCcEEEEcCCChHHHHHHHHhcCceEEEeCC
Confidence 5799999999999999999855455555543
No 328
>PRK00955 hypothetical protein; Provisional
Probab=66.43 E-value=11 Score=32.30 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCeEEEeCCC--CHH------H-----HHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCC
Q 046574 13 SLLLMRKAFKGTFLVAGGY--DRE------D-----GNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLN 71 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi--~~~------~-----ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~ 71 (104)
.++.+|+.+....|+.||+ |.. - -..+|.+..+|+|.+|-+=..=.+|++.+..|.++.
T Consensus 113 y~~~ik~~~p~~~IvlGG~eaS~rr~~hyd~w~~~~~~siL~d~~aD~vv~GeGE~t~~eL~~~L~~g~~~~ 184 (620)
T PRK00955 113 YCNKIKEAYPDVPIIIGGIEASLRRFAHYDYWSDKVRRSILIDSGADLLVYGMGEKPIVEIARRLKAGEDIK 184 (620)
T ss_pred HHHHHHHHCCCCcEEeCChhhhccccccchhhhhhhhHHHhhccCCCEEEECCcHHHHHHHHHHHHcCCCcc
Confidence 3577888887655666888 532 1 134455567999999998888889999999887653
No 329
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=66.22 E-value=17 Score=28.49 Aligned_cols=48 Identities=15% Similarity=0.067 Sum_probs=36.4
Q ss_pred chHHHHHHHHcC------CeEEEeCCCCHHHHHHHHHcCC-CcEEecchHHhhCC
Q 046574 11 PHSLLLMRKAFK------GTFLVAGGYDREDGNKAIAEGR-ADLVVYGRFFLANP 58 (104)
Q Consensus 11 ~~~~~~ir~~~~------~pvi~~Ggi~~~~ae~~l~~g~-~DlVa~gR~~lanP 58 (104)
....+.++++++ ..+|.++|++.+.+.++.+.|. +|..++|..++.++
T Consensus 261 ~~~~~~~r~~l~~~G~~~~~Iv~Sdgld~~~i~~l~~~g~~~d~fGvGt~L~~~~ 315 (327)
T cd01570 261 AYLSKEARKMLDEAGLTKVKIVASNDLDEYTIAALNAQGAPIDAFGVGTRLVTSQ 315 (327)
T ss_pred HHHHHHHHHHHHHCCCCCcEEEEeCCCCHHHHHHHHHCCCeeEEEecCccccCCC
Confidence 345556666662 3688899999999999887653 68999999988874
No 330
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=65.19 E-value=3.9 Score=32.06 Aligned_cols=59 Identities=27% Similarity=0.448 Sum_probs=42.2
Q ss_pred HHHHHHHHcCC-eEEEeCCC--CHH-----------HHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCCCCC
Q 046574 13 SLLLMRKAFKG-TFLVAGGY--DRE-----------DGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAPLNK 72 (104)
Q Consensus 13 ~~~~ir~~~~~-pvi~~Ggi--~~~-----------~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~l~~ 72 (104)
....+|+.+++ |||+ ||| |.- .=..+|-..++|++.+|-+=-.=-+++.++..|.++..
T Consensus 116 Y~n~ir~~f~~vPiii-GGIEASLRR~aHYDyWsdkvRrSIL~DskADlLvYGMGE~~i~eiA~~L~~G~~~~~ 188 (302)
T PF08497_consen 116 YTNLIREAFKDVPIII-GGIEASLRRFAHYDYWSDKVRRSILFDSKADLLVYGMGEKPILEIARRLAAGEPIED 188 (302)
T ss_pred HHHHHHHHCCCCCEEE-ecccccceehhhhhhhccccccceeecCCCCEEEecccHHHHHHHHHHHHcCCChhH
Confidence 44679999975 7666 777 321 12345556779999998665555689999999998865
No 331
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=65.09 E-value=13 Score=30.48 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=39.1
Q ss_pred hHHHHHHHHcCCeEEEeCCCC-HHHHHHHHHc-CCCcEEecchHHhhCCcHHHHHhhCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGYD-REDGNKAIAE-GRADLVVYGRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~-~~~ae~~l~~-g~~DlVa~gR~~lanPdl~~ri~~g~ 68 (104)
+.++.+|+......|+.||.- ....++++.+ ..+|+|..|-+=..=++|++.+..|.
T Consensus 81 ~~~~~~k~~~P~~~iV~GG~h~t~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~g~ 139 (497)
T TIGR02026 81 ETLKFARERLPNAIIVLGGIHPTFMFHQVLTEAPWIDFIVRGEGEETVVKLIAALENHN 139 (497)
T ss_pred HHHHHHHHHCCCCEEEEcCCCcCcCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHcCC
Confidence 355667777766566667662 1123455643 46899999998888888888887776
No 332
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=64.86 E-value=9.8 Score=27.78 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHcCCeEEEeCCCCHHHHHHHHH
Q 046574 17 MRKAFKGTFLVAGGYDREDGNKAIA 41 (104)
Q Consensus 17 ir~~~~~pvi~~Ggi~~~~ae~~l~ 41 (104)
+++....|+|++||++|+...+++.
T Consensus 147 ~~~~~~~p~iLAGGL~peNV~~a~~ 171 (207)
T PRK13958 147 LKHIKDIPYLIAGGINSENIQTVEQ 171 (207)
T ss_pred hhhccCCCEEEECCCCHHHHHHHHh
Confidence 3333345899999999998888764
No 333
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=64.58 E-value=6.5 Score=32.53 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=35.9
Q ss_pred HHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574 16 LMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP 61 (104)
Q Consensus 16 ~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~ 61 (104)
.+..++++|+|+-||| +...+-+++.-| ++.|.+|--|...-+-|
T Consensus 348 ~~A~q~gvpviADGGiq~~Ghi~KAl~lG-AstVMmG~lLAgtTEap 393 (503)
T KOG2550|consen 348 EFANQFGVPCIADGGIQNVGHVVKALGLG-ASTVMMGGLLAGTTEAP 393 (503)
T ss_pred HHHHhcCCceeecCCcCccchhHhhhhcC-chhheecceeeeeeccC
Confidence 4666788999999999 787788999888 68999987666655544
No 334
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=64.53 E-value=13 Score=27.41 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=39.0
Q ss_pred hHHHHHHHHcCCeEEEeCC---------C--CHHHHHHHHHcCCCcEEec-----chHHhhCCcHHHHHhhCC
Q 046574 12 HSLLLMRKAFKGTFLVAGG---------Y--DREDGNKAIAEGRADLVVY-----GRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Gg---------i--~~~~ae~~l~~g~~DlVa~-----gR~~lanPdl~~ri~~g~ 68 (104)
+..+.+|+.++.|||.--- | |.+++.++++.| +|+|++ -|| ..=.+|+.+++..-
T Consensus 22 ~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aG-adIIAlDaT~R~Rp-~~l~~li~~i~~~~ 92 (192)
T PF04131_consen 22 EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAG-ADIIALDATDRPRP-ETLEELIREIKEKY 92 (192)
T ss_dssp HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT--SEEEEE-SSSS-S-S-HHHHHHHHHHCT
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcC-CCEEEEecCCCCCC-cCHHHHHHHHHHhC
Confidence 4566799999999998632 2 588999999999 899999 577 55667888888755
No 335
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=64.43 E-value=8.8 Score=29.39 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=28.7
Q ss_pred HHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 33 REDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 33 ~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
.+-+.++|.+| +|++.+.-+.++||.|..|+..
T Consensus 74 ~e~~~~~L~~g-~d~iV~SVGALad~~l~erl~~ 106 (255)
T COG1712 74 REYVPKILKAG-IDVIVMSVGALADEGLRERLRE 106 (255)
T ss_pred HHHhHHHHhcC-CCEEEEechhccChHHHHHHHH
Confidence 55678889888 7999999999999999999854
No 336
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=64.06 E-value=21 Score=25.71 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=37.2
Q ss_pred hHHHHHHHHcCCeEEEeC-----C--C----CHHHHHHHHHcCCCcEEecchHHhhCC------cHHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLVAG-----G--Y----DREDGNKAIAEGRADLVVYGRFFLANP------DLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~G-----g--i----~~~~ae~~l~~g~~DlVa~gR~~lanP------dl~~ri~~ 66 (104)
+..+.+|+..+.|++.-. + + +.++++++.+.| +|+|.+.-+.+..| ++++++++
T Consensus 46 ~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aG-ad~I~~d~~~~~~p~~~~~~~~i~~~~~ 116 (221)
T PRK01130 46 EDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAG-ADIIALDATLRPRPDGETLAELVKRIKE 116 (221)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcC-CCEEEEeCCCCCCCCCCCHHHHHHHHHh
Confidence 456778888888886221 1 2 467899999999 78988866554444 56677765
No 337
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=63.88 E-value=21 Score=27.58 Aligned_cols=45 Identities=22% Similarity=0.165 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCe--EEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 13 SLLLMRKAFKGT--FLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 13 ~~~~ir~~~~~p--vi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
.+..+++.-..| -+++||+ ||.+|.-.++-| +|-|.+|.+.....
T Consensus 197 lv~~~~~~grLPVvnFAAGGvATPADAALMM~LG-adGVFVGSGIFKS~ 244 (296)
T COG0214 197 LVKEVAKLGRLPVVNFAAGGVATPADAALMMQLG-ADGVFVGSGIFKSS 244 (296)
T ss_pred HHHHHHHhCCCCeEeecccCcCChhHHHHHHHhC-CCeEEecccccCCC
Confidence 333444432334 5788999 999998888878 89999877665433
No 338
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=62.95 E-value=19 Score=29.50 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=37.5
Q ss_pred hHHHHHHHHcC------CeEEEeCCCCHHHHHHHHHcCC-CcEEecchHHhhCCc
Q 046574 12 HSLLLMRKAFK------GTFLVAGGYDREDGNKAIAEGR-ADLVVYGRFFLANPD 59 (104)
Q Consensus 12 ~~~~~ir~~~~------~pvi~~Ggi~~~~ae~~l~~g~-~DlVa~gR~~lanPd 59 (104)
.....+|+.++ ..+|.++|++.+.+.++.++|. +|..++|..++.+.+
T Consensus 263 ~l~~~~r~~ld~~G~~~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~~~~ 317 (443)
T PRK12484 263 ELSKATRAILDAAGLEQVKIVASGGLDEYRIAALLAAGAPIDGFGVGTRLGVAAD 317 (443)
T ss_pred HHHHHHHHHHHHCCCCCcEEEEeCCCCHHHHHHHHHCCCcCeEEeeCcccccCCC
Confidence 45556666662 2689999999999999998775 799999999976543
No 339
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=62.60 E-value=21 Score=27.78 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=28.5
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
.+=++|||+++.+......| +|+|++|.+--+-|
T Consensus 236 ~lEaSGgIt~~ni~~yA~tG-VD~IS~galths~~ 269 (280)
T COG0157 236 LLEASGGITLENIREYAETG-VDVISVGALTHSAP 269 (280)
T ss_pred EEEEeCCCCHHHHHHHhhcC-CCEEEeCccccCCc
Confidence 57788999999999998888 89999997665544
No 340
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=62.56 E-value=9.2 Score=35.94 Aligned_cols=33 Identities=27% Similarity=0.202 Sum_probs=29.4
Q ss_pred CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
+.|++.||+ |+.++-.++.=| +|.|++|+++|.
T Consensus 1068 v~l~a~Ggl~t~~Dv~kA~aLG-Ad~~~~gt~~li 1101 (1485)
T PRK11750 1068 IRLQVDGGLKTGLDVIKAAILG-AESFGFGTGPMV 1101 (1485)
T ss_pred eEEEEcCCcCCHHHHHHHHHcC-CcccccchHHHH
Confidence 479999999 999998999888 799999999873
No 341
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=62.43 E-value=11 Score=29.09 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=33.2
Q ss_pred EEEeCCC--CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 25 FLVAGGY--DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 25 vi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
|+=+-+. -.+-++.+|+.| +|+|.+.-+.++|++|-+++++
T Consensus 66 VVE~A~~~av~e~~~~iL~~g-~dlvv~SvGALaD~~~~~~l~~ 108 (267)
T PRK13301 66 VVEAAGQQAIAEHAEGCLTAG-LDMIICSAGALADDALRARLIA 108 (267)
T ss_pred EEECCCHHHHHHHHHHHHhcC-CCEEEEChhHhcCHHHHHHHHH
Confidence 3334444 577789999888 6999999999999999988876
No 342
>PLN02363 phosphoribosylanthranilate isomerase
Probab=61.78 E-value=16 Score=27.72 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=20.7
Q ss_pred CCeEEEeCCCCHHHHHHHHHcCCCcEEe
Q 046574 22 KGTFLVAGGYDREDGNKAIAEGRADLVV 49 (104)
Q Consensus 22 ~~pvi~~Ggi~~~~ae~~l~~g~~DlVa 49 (104)
..|+|++|||+++..+++++.-....|=
T Consensus 199 ~~p~iLAGGL~peNV~~ai~~~~P~GVD 226 (256)
T PLN02363 199 RNGWLLAGGLTPENVHEAVSLLKPTGVD 226 (256)
T ss_pred CCCEEEECCCCHHHHHHHHHhcCCcEEE
Confidence 3489999999999999988753333333
No 343
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=61.66 E-value=8.5 Score=25.98 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=23.7
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
+|.++|.+++....++++.| +|-|.+
T Consensus 33 rvpC~Grv~~~~il~Af~~G-ADGV~V 58 (124)
T PF02662_consen 33 RVPCSGRVDPEFILRAFEKG-ADGVLV 58 (124)
T ss_pred EccCCCccCHHHHHHHHHcC-CCEEEE
Confidence 58888999999999999999 798887
No 344
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=60.45 E-value=21 Score=29.59 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=31.6
Q ss_pred chHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 11 PHSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 11 ~~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
...++.+++... .|||...|. +.+.|-+++..|..|++.
T Consensus 64 l~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~ 104 (464)
T COG2204 64 LELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLE 104 (464)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeee
Confidence 356677777653 588888888 999999999999999764
No 345
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=59.74 E-value=25 Score=28.94 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=37.6
Q ss_pred chHHHHHHHHcC------CeEEEeCCCCHHHHHHHHHcCC-CcEEecchHHhhC
Q 046574 11 PHSLLLMRKAFK------GTFLVAGGYDREDGNKAIAEGR-ADLVVYGRFFLAN 57 (104)
Q Consensus 11 ~~~~~~ir~~~~------~pvi~~Ggi~~~~ae~~l~~g~-~DlVa~gR~~lan 57 (104)
....+.+|+.++ ..+|.+||++.+.+.++..+|. +|..++|..++.+
T Consensus 269 ~~l~~~vr~~ld~~G~~~~kIi~S~gLde~~i~~l~~~g~~id~fGvGt~L~~~ 322 (464)
T PRK09243 269 AYLSKKVRKMLDEAGFTDTKIVASNDLDEYTIASLKLQGAPIDGFGVGTKLVTG 322 (464)
T ss_pred HHHHHHHHHHHHHCCCCCcEEEEeCCCCHHHHHHHHhCCCCceEEEcCccccCC
Confidence 345566666662 3699999999999999888877 7999999999887
No 346
>PRK08185 hypothetical protein; Provisional
Probab=58.91 E-value=52 Score=25.43 Aligned_cols=42 Identities=10% Similarity=0.118 Sum_probs=32.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.++.|++.+++||++-||+ +.++.++++..| +--|-++..+
T Consensus 188 e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~G-I~KiNi~T~l 231 (283)
T PRK08185 188 DLLKEINERVDIPLVLHGGSANPDAEIAESVQLG-VGKINISSDM 231 (283)
T ss_pred HHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCC-CeEEEeChHH
Confidence 56677888889999999998 778899999988 5566655433
No 347
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=58.03 E-value=31 Score=25.97 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=33.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+.+..+.+...-||+..||+ -.|.-+-+..-| ++.|.+|+++-
T Consensus 171 E~l~~~~~~s~~pVllGGGV~g~Edlel~~~~G-v~gvLvaTalh 214 (229)
T COG1411 171 ELLTKVLELSEHPVLLGGGVGGMEDLELLLGMG-VSGVLVATALH 214 (229)
T ss_pred HHHHHHHHhccCceeecCCcCcHHHHHHHhcCC-Cceeeehhhhh
Confidence 56666777767799999999 677777777666 89999988753
No 348
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=57.92 E-value=24 Score=26.55 Aligned_cols=49 Identities=24% Similarity=0.088 Sum_probs=37.2
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP 61 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~ 61 (104)
+.+..+++.++.||+.-.=| ++.++.++...| +|+|.+.-..+...++.
T Consensus 101 ~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~G-AD~VlLi~~~l~~~~l~ 150 (260)
T PRK00278 101 EYLRAARAAVSLPVLRKDFIIDPYQIYEARAAG-ADAILLIVAALDDEQLK 150 (260)
T ss_pred HHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcC-CCEEEEEeccCCHHHHH
Confidence 45677888889999986655 788999999988 79988876665443443
No 349
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=57.08 E-value=41 Score=26.00 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=43.4
Q ss_pred hHHHHHHHHcCC-eEEEeC-----C--CCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574 12 HSLLLMRKAFKG-TFLVAG-----G--YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 12 ~~~~~ir~~~~~-pvi~~G-----g--i~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~ 68 (104)
+.+..+++.++. -||++| | |+.+.++++++.| +|.|-+|--...++|.-.-+-+..
T Consensus 20 ~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G-~dviT~GNH~wd~~ei~~~i~~~~ 83 (266)
T COG1692 20 EHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAG-ADVITLGNHTWDQKEILDFIDNAD 83 (266)
T ss_pred HHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhC-CCEEecccccccchHHHHHhhccc
Confidence 355668888775 677765 3 4899999999999 899999999999988876655433
No 350
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=56.88 E-value=29 Score=27.07 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=29.6
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g 51 (104)
+....+|..++.|+|+ +.-|.++|..+++.| +|+|+--
T Consensus 102 ~~~~~iK~~~~~l~MA-D~stleEal~a~~~G-ad~I~TT 139 (283)
T cd04727 102 EEHHIDKHKFKVPFVC-GARNLGEALRRISEG-AAMIRTK 139 (283)
T ss_pred HHHHHHHHHcCCcEEc-cCCCHHHHHHHHHCC-CCEEEec
Confidence 5667788888666665 444999999999999 7998763
No 351
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.84 E-value=15 Score=24.62 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=28.6
Q ss_pred HHHHHHHHcC-CeEEE--eC-------CCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 13 SLLLMRKAFK-GTFLV--AG-------GYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 13 ~~~~ir~~~~-~pvi~--~G-------gi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
..++|.+.++ .||++ =| |+|...++-+-..|.+++..+= .|.|||+.+.++
T Consensus 4 i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vn--VL~d~eiR~~lk 64 (105)
T COG0278 4 ILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVD--VLQDPEIRQGLK 64 (105)
T ss_pred HHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEe--eccCHHHHhccH
Confidence 3456666664 24333 23 3455555444444546777665 788888766554
No 352
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=56.66 E-value=9.8 Score=29.64 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCeEEEeCCC--C----HHHHHHHHHcCCCcEEecchHH-hhCCcHHHHHhhCCCCC
Q 046574 13 SLLLMRKAFKGTFLVAGGY--D----REDGNKAIAEGRADLVVYGRFF-LANPDLPRRFEFNAPLN 71 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi--~----~~~ae~~l~~g~~DlVa~gR~~-lanPdl~~ri~~g~~l~ 71 (104)
.++.+.+..++|.--..-- + .+...+++++-.+|+|.+||.+ +..|||+.++. |+-+|
T Consensus 129 dl~~~v~~~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARYMqILS~d~~~~~~-g~iIN 193 (287)
T COG0788 129 DLRPLVERFDIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARYMQILSPDFVERFP-GKIIN 193 (287)
T ss_pred HHHHHHHHcCCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhhHhhCCHHHHHhcc-CcEEE
Confidence 3455556667775544332 1 1233456667669999999986 88999999974 66554
No 353
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=55.79 E-value=19 Score=27.34 Aligned_cols=42 Identities=26% Similarity=0.171 Sum_probs=33.6
Q ss_pred HHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 16 LMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 16 ~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
.|.+.+++|||++.|++.-.+--++..| +-.|++|...-.=.
T Consensus 180 ~ISr~v~iPVlcASGlS~vT~PmAiaaG-AsGVGVGSavn~Ln 221 (242)
T PF04481_consen 180 AISRAVSIPVLCASGLSAVTAPMAIAAG-ASGVGVGSAVNRLN 221 (242)
T ss_pred HHHhccCCceEeccCcchhhHHHHHHcC-CcccchhHHhhhcc
Confidence 4777788999999999888888888888 67899987654333
No 354
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=55.73 E-value=15 Score=23.42 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHc-CCCcEEecch
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAE-GRADLVVYGR 52 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~-g~~DlVa~gR 52 (104)
.++.+|+......++.||. --...+.+++. -.+|.|.+|-
T Consensus 71 l~~~~k~~~p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 71 LARAIKERNPNIPIVVGGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp HHHHHHTTCTTSEEEEEESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred HHHHHHhcCCCCEEEEECCchhcChHHHhccCcCcceecCCC
Confidence 4444555555545555554 22333444542 3378888774
No 355
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=54.44 E-value=64 Score=22.66 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=32.7
Q ss_pred CCeEEEeCCC-CHHHHHHHHHcCCCcEEec----chHHhhCCcHHHHHhh
Q 046574 22 KGTFLVAGGY-DREDGNKAIAEGRADLVVY----GRFFLANPDLPRRFEF 66 (104)
Q Consensus 22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~----gR~~lanPdl~~ri~~ 66 (104)
+.-||..|.. +++++-.+.-+..+|.|++ |.....-|.+++.+++
T Consensus 40 GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre 89 (143)
T COG2185 40 GFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred CceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHH
Confidence 4478888888 8888655554566899988 5666667777777765
No 356
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=54.12 E-value=23 Score=27.33 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=44.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh-hCCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE-FNAPL 70 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~-~g~~l 70 (104)
..++.+++.++.||++ -+ ++++++.+.+ .+|++-+|--+..|-||...+. .|+++
T Consensus 71 ~~L~~vk~~~GlpvvT--eV~~~~~~~~v~~--~~DilQIgArn~rn~~LL~a~g~t~kpV 127 (264)
T PRK05198 71 KILQEVKETFGVPVLT--DVHEPEQAAPVAE--VVDVLQIPAFLCRQTDLLVAAAKTGKVV 127 (264)
T ss_pred HHHHHHHHHHCCceEE--EeCCHHHHHHHHh--hCcEEEECchhcchHHHHHHHhccCCeE
Confidence 4567788889988887 56 8999988875 4899999999999999998774 46666
No 357
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=53.77 E-value=27 Score=27.35 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCeEEEeCCC-C-HHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGY-D-REDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~-~~~ae~~l~~g~~DlVa~ 50 (104)
....+++..++||++.-.+ + +++++++++.+.+|+|-+
T Consensus 231 ~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 231 SYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred HHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 4456888888898776666 7 999999999998998744
No 358
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=53.17 E-value=21 Score=30.74 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=39.5
Q ss_pred CcchHHHHHHHHc----------CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574 9 ECPHSLLLMRKAF----------KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPR 62 (104)
Q Consensus 9 ~~~~~~~~ir~~~----------~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ 62 (104)
++++....||+.+ +.+++-.|+++++.+.+++....+|-+.+|+.-|.=-+|..
T Consensus 576 ~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~~~~F~~ 639 (645)
T PRK13962 576 QAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGASLKAQEFAA 639 (645)
T ss_pred HHHHHHHHHHHHHHHHhChhhhccceEEecCCCCHhHHHHHhcCCCCCeEEeehHhcCHHHHHH
Confidence 4444555676643 24677777779999999999999999999998874444543
No 359
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=53.16 E-value=36 Score=26.47 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=32.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+....+++..++||++.-.+ ++.+...+++.+.+|.|-+
T Consensus 227 ~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~ 266 (355)
T cd03321 227 EGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMP 266 (355)
T ss_pred HHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEec
Confidence 35567889888999876666 9999999999998998754
No 360
>PRK08227 autoinducer 2 aldolase; Validated
Probab=53.05 E-value=70 Score=24.50 Aligned_cols=48 Identities=25% Similarity=0.232 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCeEEEeCCC--C----HHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574 13 SLLLMRKAFKGTFLVAGGY--D----REDGNKAIAEGRADLVVYGRFFLANPDLP 61 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi--~----~~~ae~~l~~g~~DlVa~gR~~lanPdl~ 61 (104)
..+.+-+....||++.||- + .+..+++++.| +--|++||-..-.||=.
T Consensus 183 ~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aG-a~Gv~~GRNIfQ~~~p~ 236 (264)
T PRK08227 183 GFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEG-ASGVDMGRNIFQSEHPV 236 (264)
T ss_pred HHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcC-CceeeechhhhccCCHH
Confidence 3334444445699999997 3 34567788877 78999999998887643
No 361
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=52.97 E-value=26 Score=29.14 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=27.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcE
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADL 47 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~Dl 47 (104)
+..+.||+.+...=|..|+. |.++|+.+|.+| +|.
T Consensus 281 emik~iK~~yP~l~ViaGNVVT~~qa~nLI~aG-aDg 316 (503)
T KOG2550|consen 281 EMIKYIKETYPDLQIIAGNVVTKEQAANLIAAG-ADG 316 (503)
T ss_pred HHHHHHHhhCCCceeeccceeeHHHHHHHHHcc-Cce
Confidence 46677888887654445666 999999999999 675
No 362
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=52.91 E-value=40 Score=25.60 Aligned_cols=49 Identities=18% Similarity=0.066 Sum_probs=38.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLP 61 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~ 61 (104)
+.+..+++.++.||+.-+.| ++.+..++...| +|.|.+=-.++.+-++.
T Consensus 92 ~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~G-ADavLLI~~~L~~~~l~ 141 (247)
T PRK13957 92 EDLKSVSSELKIPVLRKDFILDEIQIREARAFG-ASAILLIVRILTPSQIK 141 (247)
T ss_pred HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcC-CCEEEeEHhhCCHHHHH
Confidence 45677888889999999999 999999998877 79887765566433443
No 363
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.83 E-value=48 Score=25.64 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=34.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.++.|++.+++||.+-||- +.++.+++++.| +--|-+++.+
T Consensus 189 ~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~Tel 232 (283)
T PRK07998 189 PLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYK-VAKVNIASDL 232 (283)
T ss_pred HHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcC-CcEEEECHHH
Confidence 56678888889999999987 778899999999 6778777765
No 364
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=51.87 E-value=30 Score=25.60 Aligned_cols=40 Identities=28% Similarity=0.256 Sum_probs=29.0
Q ss_pred HHHHHHHcCCe-EEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574 14 LLLMRKAFKGT-FLVAGGYDREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 14 ~~~ir~~~~~p-vi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
....++..+.- +|..+..+.++++++...| +|.|++|.-|
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g-~DYv~~Gpif 134 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELG-ADYVGLGPIF 134 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcC-CCEEEECCcC
Confidence 34566666543 5555555999999999888 8999998644
No 365
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=51.75 E-value=52 Score=19.89 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=28.9
Q ss_pred CcchHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEE
Q 046574 9 ECPHSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLV 48 (104)
Q Consensus 9 ~~~~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlV 48 (104)
.....++.+++.- +.|+|..+.- +.+...++++.|..+++
T Consensus 57 ~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l 98 (112)
T PF00072_consen 57 DGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYL 98 (112)
T ss_dssp BHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEE
T ss_pred cccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 3335677787776 4677777766 88999999988865554
No 366
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=51.54 E-value=56 Score=23.47 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=35.2
Q ss_pred hHHHHHHHHcCCeEEE--e-CC------C--CHHHHHHHHHcCCCcEEecchHHhhCCc------HHHHHhh
Q 046574 12 HSLLLMRKAFKGTFLV--A-GG------Y--DREDGNKAIAEGRADLVVYGRFFLANPD------LPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~--~-Gg------i--~~~~ae~~l~~g~~DlVa~gR~~lanPd------l~~ri~~ 66 (104)
+..+.+++..+.|+++ . +- + +.++++.+++.| +|+|.+.-+.+.+|+ ++++++.
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aG-ad~I~~~~~~~~~p~~~~~~~~i~~~~~ 120 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAG-ADIIALDATDRPRPDGETLAELIKRIHE 120 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcC-CCEEEEeCCCCCCCCCcCHHHHHHHHHH
Confidence 4556788877888874 1 11 1 456899999988 688888655554454 5555544
No 367
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=51.17 E-value=33 Score=26.81 Aligned_cols=56 Identities=11% Similarity=-0.062 Sum_probs=39.4
Q ss_pred CcchHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC--cHHHHHhhC
Q 046574 9 ECPHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP--DLPRRFEFN 67 (104)
Q Consensus 9 ~~~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP--dl~~ri~~g 67 (104)
+.+...+.|++.+++|||+--.+ -..+|+.+.+.| +|+|- +. ....| ++...+++.
T Consensus 54 ~~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~G-vDiID-eT-e~lrPade~~~~~K~~ 112 (287)
T TIGR00343 54 SDPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALG-VDYID-ES-EVLTPADWTFHIDKKK 112 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcC-CCEEE-cc-CCCCcHHHHHHHHHHH
Confidence 34567788999999999999888 488888888878 89995 21 22223 455555553
No 368
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=50.86 E-value=26 Score=28.01 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
..+.+|+.++.|+++-|=++.++|+.+++.| ++-|.+
T Consensus 214 Di~wLr~~T~LPIvvKGilt~eDA~~Ave~G-~~GIIV 250 (363)
T KOG0538|consen 214 DIKWLRSITKLPIVVKGVLTGEDARKAVEAG-VAGIIV 250 (363)
T ss_pred hhHHHHhcCcCCeEEEeecccHHHHHHHHhC-CceEEE
Confidence 5677999999999998877999999999998 566655
No 369
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=50.10 E-value=30 Score=26.63 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=43.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh-CCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF-NAPL 70 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~-g~~l 70 (104)
..++.+++.++.||++ -+ ++++++.+.+- +|++-+|--...|-||...+.. |+++
T Consensus 63 ~iL~~vk~~~glpvvT--eV~~~~~~~~vae~--vDilQIgArn~rn~~LL~a~g~t~kpV 119 (258)
T TIGR01362 63 KILQKVKEEFGVPILT--DVHESSQCEPVAEV--VDIIQIPAFLCRQTDLLVAAAKTGRIV 119 (258)
T ss_pred HHHHHHHHHhCCceEE--EeCCHHHHHHHHhh--CcEEEeCchhcchHHHHHHHhccCCeE
Confidence 3567788899989887 56 88999888653 8999999999999999877654 5555
No 370
>PRK07695 transcriptional regulator TenI; Provisional
Probab=49.71 E-value=45 Score=23.66 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=26.9
Q ss_pred HHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchH
Q 046574 14 LLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRF 53 (104)
Q Consensus 14 ~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~ 53 (104)
...+|+.++...|.+...+.+++.++.+.| +|+|.+|.-
T Consensus 86 ~~~~r~~~~~~~ig~s~~s~e~a~~a~~~G-adyi~~g~v 124 (201)
T PRK07695 86 VRSVREKFPYLHVGYSVHSLEEAIQAEKNG-ADYVVYGHV 124 (201)
T ss_pred HHHHHHhCCCCEEEEeCCCHHHHHHHHHcC-CCEEEECCC
Confidence 345666665444444433899998888877 799998763
No 371
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=49.45 E-value=25 Score=28.74 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=31.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcE
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADL 47 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~Dl 47 (104)
++.+.++..+++|||++.|- +|+..+++.....+|.
T Consensus 475 eLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adA 511 (541)
T KOG0623|consen 475 ELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADA 511 (541)
T ss_pred hHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchh
Confidence 56777888899999999999 9999999988877775
No 372
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=49.07 E-value=42 Score=25.54 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=30.1
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g 51 (104)
+..+.+++..+.|+ ++.+++|+..-.++..| +|+|-+|
T Consensus 51 ~LV~~~~~~s~lPI-CVSaVep~~f~~aV~AG-AdliEIG 88 (242)
T PF04481_consen 51 ELVKLAKSLSNLPI-CVSAVEPELFVAAVKAG-ADLIEIG 88 (242)
T ss_pred HHHHHHHHhCCCCe-EeecCCHHHHHHHHHhC-CCEEEec
Confidence 45666777667775 45679999999999999 7999885
No 373
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=48.67 E-value=29 Score=27.04 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=43.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh-CCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF-NAPL 70 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~-g~~l 70 (104)
..++.+++.++.||++ .+ ++++++.+.+- +|++-+|--+..|-||...+.. |+++
T Consensus 77 ~iL~~vk~~~GlpvvT--eV~~~~~~~~~ae~--vDilQIgAr~~rntdLL~a~~~t~kpV 133 (281)
T PRK12457 77 RIFEEVKARFGVPVIT--DVHEVEQAAPVAEV--ADVLQVPAFLARQTDLVVAIAKTGKPV 133 (281)
T ss_pred HHHHHHHHHHCCceEE--EeCCHHHHHHHhhh--CeEEeeCchhhchHHHHHHHhccCCeE
Confidence 3566788888988887 56 88888887653 8999999999999999877654 6665
No 374
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=48.24 E-value=52 Score=23.99 Aligned_cols=42 Identities=36% Similarity=0.396 Sum_probs=28.5
Q ss_pred HHHHHHHHc---CCe----EEEeCCC-------CHHHHHHHHHcCCCcE--EecchHHh
Q 046574 13 SLLLMRKAF---KGT----FLVAGGY-------DREDGNKAIAEGRADL--VVYGRFFL 55 (104)
Q Consensus 13 ~~~~ir~~~---~~p----vi~~Ggi-------~~~~ae~~l~~g~~Dl--Va~gR~~l 55 (104)
..+.+++.+ ..| |.++||+ +.++|.+.++.| +|. ++.||..+
T Consensus 177 ~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aG-a~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 177 DVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAG-ADRIGTSSGRNIW 234 (236)
T ss_dssp HHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTT-HSEEEEEEHHHHH
T ss_pred HHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcC-ChhHHHHHHHHHH
Confidence 344555555 457 9999998 367778888888 655 55566554
No 375
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=47.86 E-value=18 Score=30.16 Aligned_cols=32 Identities=38% Similarity=0.480 Sum_probs=27.6
Q ss_pred eEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhh
Q 046574 24 TFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 24 pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
.|++.|++ |+.+.-.++.=| +|.|.+|++.|.
T Consensus 376 ~l~~~Ggl~Tg~DVaka~aLG-Ad~v~~gTa~li 408 (485)
T COG0069 376 KLIADGGLRTGADVAKAAALG-ADAVGFGTAALV 408 (485)
T ss_pred EEEecCCccCHHHHHHHHHhC-cchhhhchHHHH
Confidence 68888999 999888888888 799999998763
No 376
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=47.73 E-value=5.9 Score=31.47 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=22.1
Q ss_pred CCCcEEecchHHhhCCcHHHHHhhCCCCCCCCc
Q 046574 43 GRADLVVYGRFFLANPDLPRRFEFNAPLNKYNR 75 (104)
Q Consensus 43 g~~DlVa~gR~~lanPdl~~ri~~g~~l~~~d~ 75 (104)
|.-.=|++||++++.|++ +..+.|+...|.
T Consensus 132 GEkQRVAIGRALLt~P~L---LLmDEPLaSLD~ 161 (352)
T COG4148 132 GEKQRVAIGRALLTAPEL---LLMDEPLASLDL 161 (352)
T ss_pred chhhHHHHHHHHhcCCCe---eeecCchhhccc
Confidence 334469999999999998 556777765543
No 377
>PLN02363 phosphoribosylanthranilate isomerase
Probab=47.19 E-value=30 Score=26.28 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.0
Q ss_pred eEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 24 TFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 24 pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+++-..|| ++++|+.+.+.| +|+++|
T Consensus 47 ~~VKICGit~~eda~~a~~~G-aD~iGf 73 (256)
T PLN02363 47 PLVKMCGITSARDAAMAVEAG-ADFIGM 73 (256)
T ss_pred ceEEECCCCcHHHHHHHHHcC-CCEEEE
Confidence 56777788 899999999888 799998
No 378
>COG3588 Fructose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=46.97 E-value=27 Score=27.66 Aligned_cols=36 Identities=19% Similarity=0.498 Sum_probs=26.9
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCC-------cEEecchHHhhCC
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRA-------DLVVYGRFFLANP 58 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~-------DlVa~gR~~lanP 58 (104)
+.|+++||++-++|...|+.-.. =..+|||++-..+
T Consensus 255 gIvfLSGG~s~eeA~~~Lsa~n~~~~~pw~L~fSf~RAL~~~~ 297 (332)
T COG3588 255 GIVFLSGGYSSEEANAHLSANNGERPLPWSLIFSFSRALQEGA 297 (332)
T ss_pred eeEEecCCcchHHHHHHHHhhcCCCCCCceeeeeHHHHhhhhh
Confidence 35899999999999998876432 2467888876553
No 379
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=46.81 E-value=18 Score=31.15 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=33.1
Q ss_pred HHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCC----------CcEEecchHHhh
Q 046574 14 LLLMRKAFKGTFLVAGGY-DREDGNKAIAEGR----------ADLVVYGRFFLA 56 (104)
Q Consensus 14 ~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~----------~DlVa~gR~~la 56 (104)
...+|.+-++.||..||| +++.+...|...+ +|-|.+|...++
T Consensus 205 Ys~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMa 258 (717)
T COG4981 205 YSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMA 258 (717)
T ss_pred HHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHh
Confidence 345777778899999999 9999999886433 567777777664
No 380
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=46.80 E-value=15 Score=21.98 Aligned_cols=18 Identities=11% Similarity=0.477 Sum_probs=16.0
Q ss_pred hHHhhCCcHHHHHhhCCC
Q 046574 52 RFFLANPDLPRRFEFNAP 69 (104)
Q Consensus 52 R~~lanPdl~~ri~~g~~ 69 (104)
..|+.||+...++++|..
T Consensus 7 ~YLv~nPevl~kl~~g~a 24 (57)
T PF05952_consen 7 NYLVQNPEVLEKLKEGEA 24 (57)
T ss_pred HHHHHChHHHHHHHcCCe
Confidence 468999999999999985
No 381
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A.
Probab=45.79 E-value=63 Score=23.13 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g 51 (104)
.++.+.+.++.+|-..-.-+.....+.+.+|.+|++.++
T Consensus 19 l~~~L~~~~g~~v~~~~~~~~~~~~~~l~~g~~D~~~~~ 57 (243)
T PF12974_consen 19 LADYLSKQLGVPVELVPADDYAEFIEALRSGEIDLAFMG 57 (243)
T ss_dssp HHHHHHHHHTSEEEEE--SSHHHHHHHHHTTS-SEEE--
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHHHHHcCCccEEEEC
Confidence 445677778888877766688899999999999999886
No 382
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.56 E-value=37 Score=25.84 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh-CCCC
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF-NAPL 70 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~-g~~l 70 (104)
.+..+++.++.|+++. -.++++++.+.+ .+|++-+|-..+.|.+|...+.. |+|+
T Consensus 70 ~L~~~~~~~Gl~~~Te-v~d~~~v~~~~e--~vdilqIgs~~~~n~~LL~~va~tgkPV 125 (250)
T PRK13397 70 YLHEVCQEFGLLSVSE-IMSERQLEEAYD--YLDVIQVGARNMQNFEFLKTLSHIDKPI 125 (250)
T ss_pred HHHHHHHHcCCCEEEe-eCCHHHHHHHHh--cCCEEEECcccccCHHHHHHHHccCCeE
Confidence 4455667778788773 238888877765 49999999999999999988854 6665
No 383
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=44.19 E-value=59 Score=24.73 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=36.3
Q ss_pred hHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
.....+|+.++ ...|.+---+.++++++++.| +|.|.++.-. |+..+++..
T Consensus 170 ~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~g-aDyI~ld~~~---~e~l~~~~~ 221 (268)
T cd01572 170 EAVRRARAAAPFTLKIEVEVETLEQLKEALEAG-ADIIMLDNMS---PEELREAVA 221 (268)
T ss_pred HHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcC-CCEEEECCcC---HHHHHHHHH
Confidence 35567888875 334444434889999999888 7999998753 677666654
No 384
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=42.81 E-value=72 Score=24.18 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=30.0
Q ss_pred hHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecch
Q 046574 12 HSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGR 52 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR 52 (104)
...+.+|+... ...|...--|++++.++++.| +|.|.++.
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~g-aD~I~ld~ 209 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAG-ADIIMLDN 209 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcC-CCEEEECC
Confidence 34567888876 344554445899999999888 79999976
No 385
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.21 E-value=43 Score=26.54 Aligned_cols=37 Identities=22% Similarity=0.181 Sum_probs=24.6
Q ss_pred cCCe-EEEeCCCCHH----HHHHHHHcCCC--cEEecchHHhhCC
Q 046574 21 FKGT-FLVAGGYDRE----DGNKAIAEGRA--DLVVYGRFFLANP 58 (104)
Q Consensus 21 ~~~p-vi~~Ggi~~~----~ae~~l~~g~~--DlVa~gR~~lanP 58 (104)
.+.| ||+.||.+.+ ..+.+++.| + --|.+||....++
T Consensus 240 ~~~P~vvlsgG~~~~~f~~~l~~A~~aG-a~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 240 TDLPFIFLSAGVSPELFRRTLEFACEAG-ADFSGVLCGRATWQDG 283 (340)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcC-CCccchhhhHHHHhhh
Confidence 3556 5556777644 456666666 5 6899999887654
No 386
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=40.39 E-value=39 Score=26.03 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=33.1
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.++.+++..+.||++..|++++.+...++- +|-+.+|..+
T Consensus 195 ~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~--adG~IvgT~l 235 (263)
T COG0434 195 EELKLAKEAVDTPVLVGSGVNPENIEELLKI--ADGVIVGTSL 235 (263)
T ss_pred HHHHHHHhccCCCEEEecCCCHHHHHHHHHH--cCceEEEEEE
Confidence 4566788888899999999999999999974 6777777544
No 387
>PF08291 Peptidase_M15_3: Peptidase M15 ; InterPro: IPR013230 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents the C-terminal domain of zinc D-Ala-D-Ala carboxypeptidases from Streptomyces species and non-peptidase homologues that belong to MEROPS peptidase family M15 (subfamily M15A, clan MD) [].; PDB: 1LBU_A.
Probab=40.38 E-value=26 Score=22.94 Aligned_cols=50 Identities=26% Similarity=0.438 Sum_probs=24.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHH---------cCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIA---------EGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~---------~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
..++.+|+.++.|++++.|+ ++ .-+..+. ...+|+...+. ...++...++
T Consensus 32 ~~L~~lR~~~g~pi~ItSgyR~~-~~N~~vGGa~~S~H~~G~A~Di~~~~~---~~~~~~~~~~ 91 (110)
T PF08291_consen 32 NKLEKLRDHFGKPIIITSGYRCP-DHNRAVGGAPNSQHMKGRAADIVVSGM---SPEEVAQIAR 91 (110)
T ss_dssp HHHHHHHHHTTS---EEE----H-HHHHHHT--TT-GGGGT-EEEE--TTT----HHHHHHHGG
T ss_pred HHHHHHHHHHCCCeEEeeeecCh-hhchhhcCCCCCCCCCCEeEEEecCCC---CHHHHHHHHH
Confidence 46788999999999999999 55 3334432 13367777775 2334444444
No 388
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.33 E-value=1.1e+02 Score=20.63 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=29.8
Q ss_pred CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh----hCCcHHHHHhh
Q 046574 22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL----ANPDLPRRFEF 66 (104)
Q Consensus 22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l----anPdl~~ri~~ 66 (104)
+--|+-.|.. ++++.-++..+..+|+|+++-..= .-|.+..++++
T Consensus 30 GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 30 GFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDK 79 (132)
T ss_pred CcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHh
Confidence 3478888888 888765555555689999975443 34555555554
No 389
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=40.32 E-value=68 Score=25.50 Aligned_cols=39 Identities=31% Similarity=0.403 Sum_probs=28.2
Q ss_pred HHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHH
Q 046574 15 LLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 15 ~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
...|+..+ ..+|.....+++++.++...| +|.|++|--|
T Consensus 231 ~~aR~llg~~~iIG~S~Hs~~e~~~A~~~G-aDYI~lGPvf 270 (347)
T PRK02615 231 AVARQLLGPEKIIGRSTTNPEEMAKAIAEG-ADYIGVGPVF 270 (347)
T ss_pred HHHHHhcCCCCEEEEecCCHHHHHHHHHcC-CCEEEECCCc
Confidence 34566553 356666666999999999888 8999998443
No 390
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=40.30 E-value=55 Score=25.66 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=38.8
Q ss_pred CcchHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCC--cHHHHHhhC
Q 046574 9 ECPHSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANP--DLPRRFEFN 67 (104)
Q Consensus 9 ~~~~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanP--dl~~ri~~g 67 (104)
..+...+.|++.+++|||+-..+ -..+|+.+.+.| +|+|. +. ....| ++...+++.
T Consensus 61 ~~p~~I~aIk~~V~iPVigk~Righ~~Ea~~L~~~G-vDiID-~T-e~lrpad~~~~~~K~~ 119 (293)
T PRK04180 61 ADPKMIEEIMDAVSIPVMAKARIGHFVEAQILEALG-VDYID-ES-EVLTPADEEYHIDKWD 119 (293)
T ss_pred CCHHHHHHHHHhCCCCeEEeehhhHHHHHHHHHHcC-CCEEe-cc-CCCCchHHHHHHHHHH
Confidence 33456678999999999998888 488888888778 89995 21 11223 455555553
No 391
>cd00344 FBP_aldolase_I Fructose-bisphosphate aldolase class I. Fructose-1,6-bisphosphate aldolase is an enzyme of the glycolytic and gluconeogenic pathways found in vertebrates, plants, and bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=40.22 E-value=33 Score=27.31 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=24.6
Q ss_pred CeEEEeCCCCHHHHHHHHHcCCC--------cEEecchHHh
Q 046574 23 GTFLVAGGYDREDGNKAIAEGRA--------DLVVYGRFFL 55 (104)
Q Consensus 23 ~pvi~~Ggi~~~~ae~~l~~g~~--------DlVa~gR~~l 55 (104)
+.|+++||.|.++|..-|+.-.- =..+|||+|-
T Consensus 255 gVvfLSGGqS~eeAt~~Lna~n~~~~~~pW~lsfSfgRALq 295 (328)
T cd00344 255 GVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQ 295 (328)
T ss_pred eEEeccCCCCHHHHHHHHHHhcCCCCCCCceEEechHHHhC
Confidence 46999999999999888875221 2457788776
No 392
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=40.20 E-value=45 Score=24.27 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=17.9
Q ss_pred EEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 26 LVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 26 i~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+-..|+ ++++|+.+.+.| +|+++|
T Consensus 5 vKICGi~~~eda~~~~~~G-ad~iGf 29 (210)
T PRK01222 5 VKICGITTPEDAEAAAELG-ADAIGF 29 (210)
T ss_pred EEECCCCcHHHHHHHHHcC-CCEEEE
Confidence 445566 888888888777 788887
No 393
>PRK06852 aldolase; Validated
Probab=40.17 E-value=1.1e+02 Score=24.08 Aligned_cols=47 Identities=23% Similarity=0.140 Sum_probs=32.6
Q ss_pred HHHHHHHHc-CCeEEEeCCC--C----HHHHHHHHH-cCCCcEEecchHHhhCCcH
Q 046574 13 SLLLMRKAF-KGTFLVAGGY--D----REDGNKAIA-EGRADLVVYGRFFLANPDL 60 (104)
Q Consensus 13 ~~~~ir~~~-~~pvi~~Ggi--~----~~~ae~~l~-~g~~DlVa~gR~~lanPdl 60 (104)
..+.+-+.. ..||+.+||- + .+.++++++ .| +--|++||-..-.|+=
T Consensus 220 ~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~aG-a~Gv~~GRNIfQ~~~p 274 (304)
T PRK06852 220 LFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHISG-ASGNATGRNIHQKPLD 274 (304)
T ss_pred HHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHcC-CceeeechhhhcCCCc
Confidence 333444444 5688999987 3 345677777 55 7899999999988653
No 394
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=40.06 E-value=76 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=26.2
Q ss_pred HHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecch
Q 046574 14 LLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGR 52 (104)
Q Consensus 14 ~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR 52 (104)
+...|+... ..+|.+... +.+++.++.+.| +|.|+||-
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~g-aDYv~~Gp 139 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELR-PDYLFFGK 139 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcC-CCEEEECC
Confidence 445666663 356655534 788888877777 79999994
No 395
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=39.67 E-value=1e+02 Score=23.79 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=34.2
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.++.|++.+++||.+-||- +.++.+++++.| +--|=++..+
T Consensus 196 ~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~T~l 239 (288)
T TIGR00167 196 ERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLG-VVKVNIDTEL 239 (288)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEcChHH
Confidence 56778999999999999987 678899999998 5667666554
No 396
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=39.43 E-value=67 Score=25.91 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=31.7
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEe
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVV 49 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa 49 (104)
..+..|++..++||++---+++.-|.++++.| +|.|=
T Consensus 70 ~al~~I~~~~~iPlvADIHFd~~lAl~a~~~G-~~~iR 106 (360)
T PRK00366 70 AALPEIKKQLPVPLVADIHFDYRLALAAAEAG-ADALR 106 (360)
T ss_pred HhHHHHHHcCCCCEEEecCCCHHHHHHHHHhC-CCEEE
Confidence 45667888889999999888999999999998 68773
No 397
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=39.25 E-value=32 Score=25.01 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 33 REDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 33 ~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
............+|+|.+||+....+|=.+.++
T Consensus 192 ~~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~ 224 (226)
T PF00215_consen 192 RATTPAAAKQAGADIIIVGRAITKAEDPREAAE 224 (226)
T ss_dssp CHHHHHHHHHTTGSEEEESHHHHTSSSHHHHHH
T ss_pred ccccHHHHHhcCCEEEEEChHHhCCCCHHHHHh
Confidence 333444444344899999999999998766543
No 398
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=39.19 E-value=1e+02 Score=23.86 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=33.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.++.|++.+++||.+-||- +.++.+++++.| +--|-++..+
T Consensus 193 ~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~G-i~KiNi~T~l 236 (285)
T PRK07709 193 AEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLG-TSKINVNTEN 236 (285)
T ss_pred HHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEeChHH
Confidence 46677999999999999987 678899999998 5666665543
No 399
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=39.10 E-value=95 Score=20.99 Aligned_cols=43 Identities=16% Similarity=-0.010 Sum_probs=22.7
Q ss_pred HHHHHHHHc--CCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHh
Q 046574 13 SLLLMRKAF--KGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 13 ~~~~ir~~~--~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
..+.+++.- +.+||+.|.+..++.+++.+.|-..++..|.+..
T Consensus 73 ~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~ 117 (132)
T TIGR00640 73 LRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIP 117 (132)
T ss_pred HHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHH
Confidence 344455532 2244443444556666677777655666665444
No 400
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.01 E-value=79 Score=22.53 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=27.1
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
+..+.+++......+..|.+ +.++++.+++.| +|+|..+
T Consensus 52 e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~g-Adgv~~p 91 (187)
T PRK07455 52 ELISQLREKLPECIIGTGTILTLEDLEEAIAAG-AQFCFTP 91 (187)
T ss_pred HHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcC-CCEEECC
Confidence 45555666555444555666 889999999988 7999444
No 401
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=38.80 E-value=1e+02 Score=23.84 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=32.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.++.|++.+++||.+-||- ..++.+++++.| +--|-++..+
T Consensus 192 d~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~~G-I~KiNi~T~l 235 (286)
T PRK12738 192 QRLAEIREVVDVPLVLHGASDVPDEFVRRTIELG-VTKVNVATEL 235 (286)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEeCcHH
Confidence 46778899999999999887 788899999988 4566555443
No 402
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=38.26 E-value=99 Score=23.29 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=36.1
Q ss_pred hHHHHHHHHcC-CeEEEeCCCCH------H-H---HHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAFK-GTFLVAGGYDR------E-D---GNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi~~------~-~---ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+..+.+|+..+ .-+|++=||-+ + . ..++++.| +|++.+||+....+|=+..++
T Consensus 165 ~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~~~t~~~A~~~G-ad~ivVGR~I~~a~~p~~a~~ 228 (240)
T COG0284 165 EEVAAIREILGPDFLILTPGIGAGSQGGDQGRVMTPGEAVRAG-ADYIVVGRPITQAGDPVAAAR 228 (240)
T ss_pred HHHHHHHHhcCCCcEEECCCcCcCcCCCCcccccCHHHHHhcC-CCEEEEChhhhcCCChHHHHH
Confidence 45667888875 34666677733 1 1 45666666 799999999998877554443
No 403
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=37.61 E-value=49 Score=26.76 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=25.7
Q ss_pred hHHHHHHHHcCC-eEEEeCCC-CHHHHHHHHHc-CCCcEEecchHHhh
Q 046574 12 HSLLLMRKAFKG-TFLVAGGY-DREDGNKAIAE-GRADLVVYGRFFLA 56 (104)
Q Consensus 12 ~~~~~ir~~~~~-pvi~~Ggi-~~~~ae~~l~~-g~~DlVa~gR~~la 56 (104)
..++.+|+.... +|++.|.. |. ..++++.. ..+|+|..|=+=..
T Consensus 86 ~ia~~iK~~~p~~~vv~GG~h~t~-~pe~~l~~~~~vD~Vv~GEgE~~ 132 (472)
T TIGR03471 86 KTAEALKEQNPATKIGFVGAHVAV-LPEKTLKQGPAIDFVCRREFDYT 132 (472)
T ss_pred HHHHHHHHhCCCCEEEEECCCccc-CHHHHHhcCCCeeEEEeCchHHH
Confidence 456778887755 44444444 32 23345543 45899999865443
No 404
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=37.55 E-value=85 Score=23.91 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhh
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
..+.+|+..+...|.+--.|.+++.++++.| +|.|.+++.+..
T Consensus 173 av~~~R~~~~~~~IgVev~t~eea~~A~~~g-aD~I~ld~~~p~ 215 (272)
T cd01573 173 ALARLRATAPEKKIVVEVDSLEEALAAAEAG-ADILQLDKFSPE 215 (272)
T ss_pred HHHHHHHhCCCCeEEEEcCCHHHHHHHHHcC-CCEEEECCCCHH
Confidence 4556777665444544445899999999877 799999875443
No 405
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=37.53 E-value=1.1e+02 Score=23.75 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=34.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+.++.|++.+++||.+-||- +.++..++++.| +--|-++..+.
T Consensus 192 ~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~G-i~KiNi~T~l~ 236 (284)
T PRK09195 192 DRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLG-ICKVNVATELK 236 (284)
T ss_pred HHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcC-CeEEEeCcHHH
Confidence 46778999999999999887 788899999988 56777766554
No 406
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=37.43 E-value=1.2e+02 Score=22.39 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=32.3
Q ss_pred hHHHHHHHHcCC----eEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKG----TFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~----pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
..++.+.+..+| -|.-+|.+ +..++-+.|..|.+|+..+.-..+
T Consensus 17 ~fa~~v~e~t~G~v~i~v~~~g~lg~~~e~~~~v~~G~vdm~~~~~~~~ 65 (286)
T PF03480_consen 17 KFAEEVEERTGGRVKIEVFPAGQLGKEAEVLEAVQDGAVDMAVVSPSYL 65 (286)
T ss_dssp HHHHHHHHHTTTSEEEEEEETTSSSSHHHHHHHHHTTSSSEEEEEGGGG
T ss_pred HHHHHHHHHcCCeEEEEEecCcccCCHHHHHHHHhCCCccEEeecchhh
Confidence 456667777776 35556777 888899999999999877755444
No 407
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=37.09 E-value=1.1e+02 Score=23.63 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=33.4
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.++.|++.+++||.+-||- +.++..++++.| +--|-++..+
T Consensus 190 ~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~T~l 233 (282)
T TIGR01858 190 DRLAEIREVVDVPLVLHGASDVPDEDVRRTIELG-ICKVNVATEL 233 (282)
T ss_pred HHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcC-CeEEEeCcHH
Confidence 46778999999999999887 788899999988 5666665544
No 408
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=37.08 E-value=1.2e+02 Score=24.97 Aligned_cols=45 Identities=31% Similarity=0.322 Sum_probs=34.2
Q ss_pred chHHHHHHHHcCC---eEEEeCCC-C-----------HHHHHHHHHcCCCcEEecchHHhh
Q 046574 11 PHSLLLMRKAFKG---TFLVAGGY-D-----------REDGNKAIAEGRADLVVYGRFFLA 56 (104)
Q Consensus 11 ~~~~~~ir~~~~~---pvi~~Ggi-~-----------~~~ae~~l~~g~~DlVa~gR~~la 56 (104)
.-+++.+++..+. |+-+.||| + .|.|....++| +|-|++|.-.+.
T Consensus 302 ~PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFRSG-ADKvSIGsDAVy 361 (541)
T KOG0623|consen 302 LPMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFRSG-ADKVSIGSDAVY 361 (541)
T ss_pred ChHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHhcC-CceeeechhHHH
Confidence 3477888887763 88888887 2 56777888888 799999976664
No 409
>PRK03673 hypothetical protein; Provisional
Probab=36.68 E-value=37 Score=27.44 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=30.9
Q ss_pred HHHHHHcC--CeEEEeCCC--CHHH-HHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 15 LLMRKAFK--GTFLVAGGY--DRED-GNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 15 ~~ir~~~~--~pvi~~Ggi--~~~~-ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
..+++... ..||++||+ +.++ ..+++.+ ++|+++..||++.++++.
T Consensus 52 ~~l~~a~~~~DlVI~tGGlGpt~dD~t~~avA~------a~g~~L~~d~e~~~~i~~ 102 (396)
T PRK03673 52 AILRERSQHADVLIVNGGLGPTSDDLSALAAAT------AAGEGLVLHEEWLAEMER 102 (396)
T ss_pred HHHHHHhccCCEEEEcCCCCCCCcccHHHHHHH------HcCCCceeCHHHHHHHHH
Confidence 34444443 379999999 4443 4455532 378999999999987764
No 410
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=36.17 E-value=53 Score=23.89 Aligned_cols=38 Identities=11% Similarity=-0.030 Sum_probs=23.3
Q ss_pred eCCC-CHHHHHHHHHcCCCcEEecc----hHHhhCCcHHHHHhh
Q 046574 28 AGGY-DREDGNKAIAEGRADLVVYG----RFFLANPDLPRRFEF 66 (104)
Q Consensus 28 ~Ggi-~~~~ae~~l~~g~~DlVa~g----R~~lanPdl~~ri~~ 66 (104)
..|+ ++++|+.+.+.| +|+++|= .+--.+|+....+..
T Consensus 5 ICGit~~eda~~~~~~G-aD~iGfIf~~~SpR~V~~~~a~~i~~ 47 (207)
T PRK13958 5 FCGFTTIKDVTAASQLP-IDAIGFIHYEKSKRHQTITQIKKLAS 47 (207)
T ss_pred EcCCCcHHHHHHHHHcC-CCEEEEecCCCCcccCCHHHHHHHHH
Confidence 3456 788888887777 6888773 222244555555554
No 411
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=36.02 E-value=78 Score=24.51 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=31.9
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRF 53 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~ 53 (104)
+.++.|++.+++||.+-||- +.++.++++..| +--|-++..
T Consensus 193 ~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~G-I~KiNi~T~ 235 (286)
T PRK08610 193 KEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIPFG-TAKINVNTE 235 (286)
T ss_pred HHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHCC-CeEEEeccH
Confidence 46677888889999999987 678899999988 455555443
No 412
>PRK03670 competence damage-inducible protein A; Provisional
Probab=36.01 E-value=18 Score=27.42 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=26.7
Q ss_pred CeEEEeCCC--CHHH-HHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 23 GTFLVAGGY--DRED-GNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 23 ~pvi~~Ggi--~~~~-ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
..||++||+ |+++ ..+++.. ++++++..||+...+++.
T Consensus 62 DlVIttGGlGpt~dD~T~eava~------a~g~~l~~~~e~~~~i~~ 102 (252)
T PRK03670 62 EVLVISGGLGPTHDDVTMLAVAE------ALGRELVLCEDCLERIKE 102 (252)
T ss_pred CEEEECCCccCCCCCchHHHHHH------HhCCCCcCCHHHHHHHHH
Confidence 478888998 4443 3444432 378899999998888865
No 413
>COG4024 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.79 E-value=39 Score=25.07 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=20.8
Q ss_pred CCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCC
Q 046574 22 KGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNA 68 (104)
Q Consensus 22 ~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~ 68 (104)
+-|++++||. +++++.++ ||.+|.+..+|.
T Consensus 123 ~a~~v~t~G~L~~eDmR~I-----------------np~~PEkaleGl 153 (218)
T COG4024 123 DAPIVQTGGPLVPEDMRKI-----------------NPNLPEKALEGL 153 (218)
T ss_pred CCceeeeCCCCCHHHHHHh-----------------CCCCcHHHHHHH
Confidence 4577777776 77777543 677777776664
No 414
>cd08451 PBP2_BudR The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of BudR regulator, which is responsible for induction of the butanediol formation pathway under fermentative growth conditions. Three enzymes are involved in the production of 1 mol of 2,3 butanediol from the condensation of 2 mol of pyruvate with acetolactate and acetoin as intermediates: acetolactate synthetase, acetolactate decarboxylase, and acetoin reductase. In Klebsiella terrigena, BudR regulates the expression of the budABC operon genes, encoding these three enzymes of the butanediol pathway. In many bacterial species, the use of this pathway can prevent intracellular acidification by diverting metabolism from acid production to the formation of neutral compounds (acetoin and butanediol). This substra
Probab=35.18 E-value=1.1e+02 Score=19.65 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=28.9
Q ss_pred chHHHHHHHHcCC-eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcH
Q 046574 11 PHSLLLMRKAFKG-TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDL 60 (104)
Q Consensus 11 ~~~~~~ir~~~~~-pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl 60 (104)
+...+.+++.... .|-... .+.++..+.+.+|.+|++....+...++++
T Consensus 17 ~~~l~~~~~~~P~i~l~i~~-~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~ 66 (199)
T cd08451 17 PGLIRRFREAYPDVELTLEE-ANTAELLEALREGRLDAAFVRPPVARSDGL 66 (199)
T ss_pred HHHHHHHHHHCCCcEEEEec-CChHHHHHHHHCCCccEEEEecCCCCCCce
Confidence 3455667777654 333322 245667777889999997754433324444
No 415
>PRK03094 hypothetical protein; Provisional
Probab=35.14 E-value=51 Score=20.93 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=18.8
Q ss_pred cCCeEEEeCCCCHHHHHHHHHc
Q 046574 21 FKGTFLVAGGYDREDGNKAIAE 42 (104)
Q Consensus 21 ~~~pvi~~Ggi~~~~ae~~l~~ 42 (104)
.+.|||-+-|.|+++..+.|++
T Consensus 56 t~~pVI~A~G~TaeEI~~~ve~ 77 (80)
T PRK03094 56 TKGSVITASGLTADEICQQVES 77 (80)
T ss_pred cCCcEEEcCCCCHHHHHHHHHH
Confidence 4579999999999999888864
No 416
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=35.05 E-value=1e+02 Score=24.60 Aligned_cols=39 Identities=18% Similarity=0.069 Sum_probs=29.8
Q ss_pred hHHHHHHHHcC-CeEEEeCCC--CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFK-GTFLVAGGY--DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~ 50 (104)
+..+.+|+.++ .||++=... +++++..+++.+.+|+|.+
T Consensus 203 ~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~V 244 (392)
T cd02808 203 QLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITI 244 (392)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 45677888888 787654433 7888889988887898877
No 417
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=34.50 E-value=27 Score=27.98 Aligned_cols=29 Identities=28% Similarity=0.365 Sum_probs=25.3
Q ss_pred HHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 38 KAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 38 ~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+-+.++.+|.+++.|+.|.|--|+.|+.+
T Consensus 112 en~ss~tADaLGLSRAILcND~Lvkrlee 140 (429)
T KOG3651|consen 112 ENVSSDTADALGLSRAILCNDPLVKRLEE 140 (429)
T ss_pred hhcccCchhhhcchhhhhcCcHHHHHHHH
Confidence 44567889999999999999999999875
No 418
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=34.49 E-value=79 Score=23.56 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=29.1
Q ss_pred eEEEeCCCCHHHHHHHHHcC----CCcEEecchHHhhCCcH
Q 046574 24 TFLVAGGYDREDGNKAIAEG----RADLVVYGRFFLANPDL 60 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g----~~DlVa~gR~~lanPdl 60 (104)
.+|.+++++.+.++++++.+ ..|..++|..++.+-+-
T Consensus 150 ~Ii~Sd~Lde~~i~~l~~~~~~~g~~~~fGVGT~L~t~~~~ 190 (245)
T PF04095_consen 150 KIIASDGLDEEKIEELLEQGAEKGFNDSFGVGTNLVTDFDR 190 (245)
T ss_dssp EEEEESS-SHHHHHHHHHHHCCTTSEEEEEESHHHHSSCTT
T ss_pred EEEEeCCCCHHHHHHHHHHhhcccceeEeecCchheeeCCC
Confidence 58888999999998888764 35799999999987643
No 419
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=34.43 E-value=1.3e+02 Score=23.17 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=33.3
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.++.|++.+++|+.+-||- +.++.+++++.| +--|-++..+
T Consensus 192 ~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~T~~ 235 (284)
T PRK12857 192 DRLAKIKELVNIPIVLHGSSGVPDEAIRKAISLG-VRKVNIDTNI 235 (284)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEeCcHH
Confidence 46778999999999999887 788899999988 5566665543
No 420
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=34.35 E-value=63 Score=26.62 Aligned_cols=54 Identities=20% Similarity=0.052 Sum_probs=33.7
Q ss_pred HHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecc----hHHhhCCcHHHHHhhCC
Q 046574 14 LLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG----RFFLANPDLPRRFEFNA 68 (104)
Q Consensus 14 ~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g----R~~lanPdl~~ri~~g~ 68 (104)
.+.+++.+.+.|=.||--++++|+.+.+.| +|+++|= .+--.+|+....+....
T Consensus 248 ~~~~~~L~~~~vKICGit~~eda~~a~~~G-aD~lGfIf~~~SpR~V~~~~a~~i~~~l 305 (454)
T PRK09427 248 ELAVRKLILGENKVCGLTRPQDAKAAYDAG-AVYGGLIFVEKSPRYVSLEQAQEIIAAA 305 (454)
T ss_pred HHHHHHHhccccccCCCCCHHHHHHHHhCC-CCEEeeEeCCCCCCCCCHHHHHHHHHhC
Confidence 344566555544444444999999999888 8999882 23333555556555433
No 421
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=34.31 E-value=1e+02 Score=23.37 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=34.0
Q ss_pred hHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 12 HSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 12 ~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
.....+|+.++ ...|.+---|.+++.++++.| +|.|.++... |+-.+++..
T Consensus 166 ~av~~~r~~~~~~~~Igvev~t~eea~~A~~~g-aDyI~ld~~~---~e~lk~~v~ 217 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVEVESLEEAEEAAEAG-ADIIMLDNMK---PEEIKEAVQ 217 (265)
T ss_pred HHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcC-CCEEEECCCC---HHHHHHHHH
Confidence 45567888775 334444434899999999888 7999997643 344444443
No 422
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=34.21 E-value=1.3e+02 Score=23.18 Aligned_cols=43 Identities=23% Similarity=0.185 Sum_probs=34.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+.++.|++.+++||.+-||- +.++..++++.| +--|-++..+-
T Consensus 192 ~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~~G-i~KiNi~T~l~ 236 (284)
T PRK12737 192 ERLAEIREKVSIPLVLHGASGVPDEDVKKAISLG-ICKVNVATELK 236 (284)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHCC-CeEEEeCcHHH
Confidence 46778999999999999887 788899999988 56777766553
No 423
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=34.20 E-value=60 Score=23.62 Aligned_cols=45 Identities=24% Similarity=0.385 Sum_probs=30.3
Q ss_pred eEEEeCCC-C--HHHHHHHHHc--CCCcEEecchHHhhCCcHHHHHhhCCCC
Q 046574 24 TFLVAGGY-D--REDGNKAIAE--GRADLVVYGRFFLANPDLPRRFEFNAPL 70 (104)
Q Consensus 24 pvi~~Ggi-~--~~~ae~~l~~--g~~DlVa~gR~~lanPdl~~ri~~g~~l 70 (104)
+++..||- | -.-||..+.+ +.+-.|+-||++ |+++-+||+.-+.-
T Consensus 2 ~ilvtGgaRSGKS~~AE~la~~~~~~v~YvAT~~a~--D~Em~~RI~~Hr~r 51 (175)
T COG2087 2 MILVTGGARSGKSSFAEALAGESGGQVLYVATGRAF--DDEMQERIAHHRAR 51 (175)
T ss_pred eEEEecCccCCchHHHHHHHHhhCCceEEEEecCCC--CHHHHHHHHHHHhc
Confidence 35667887 4 4457777765 444445556666 99999999986653
No 424
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=34.05 E-value=89 Score=19.92 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=29.8
Q ss_pred eEEEeCCC--CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 24 TFLVAGGY--DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 24 pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
.||=+++. -.+-+.++|+.| +++|..-+..++++.+-.++.
T Consensus 62 vvVE~t~~~~~~~~~~~~L~~G-~~VVt~nk~ala~~~~~~~L~ 104 (117)
T PF03447_consen 62 VVVECTSSEAVAEYYEKALERG-KHVVTANKGALADEALYEELR 104 (117)
T ss_dssp EEEE-SSCHHHHHHHHHHHHTT-CEEEES-HHHHHSHHHHHHHH
T ss_pred EEEECCCchHHHHHHHHHHHCC-CeEEEECHHHhhhHHHHHHHH
Confidence 45555666 456689999988 699999999999777666664
No 425
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=33.99 E-value=1.3e+02 Score=19.42 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecch
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGR 52 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR 52 (104)
.++.+.+..+..+-..-. +...+.+.+.+|.+|++..+.
T Consensus 29 ~~~~~~~~~g~~~~~~~~-~~~~~~~~l~~g~~D~~~~~~ 67 (219)
T smart00062 29 LAKAIAKELGLKVEFVEV-SFDNLLTALKSGKIDVVAAGM 67 (219)
T ss_pred HHHHHHHHhCCeEEEEec-cHHHHHHHHHCCcccEEeccc
Confidence 456677776665444433 678899999999999987764
No 426
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=33.47 E-value=1e+02 Score=21.30 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=16.5
Q ss_pred EEEeCCC---CHHHHHHHHHcCCCcEEecchHH
Q 046574 25 FLVAGGY---DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 25 vi~~Ggi---~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
++.+||. ...-++.+++.|...+|.++|.-
T Consensus 3 ylitGG~gglg~~la~~La~~~~~~~il~~r~~ 35 (181)
T PF08659_consen 3 YLITGGLGGLGQSLARWLAERGARRLILLGRSG 35 (181)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG
T ss_pred EEEECCccHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 3444444 45556666666666666666663
No 427
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=33.36 E-value=80 Score=23.86 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=39.0
Q ss_pred HHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh-CCCC
Q 046574 14 LLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF-NAPL 70 (104)
Q Consensus 14 ~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~-g~~l 70 (104)
++.+.+.++.++++.- .++++++.+.+ - +|++-+|-..+.|++|...+.. |+|+
T Consensus 81 l~~~~~~~Gl~~~t~~-~d~~~~~~l~~-~-~d~lkI~s~~~~n~~LL~~~a~~gkPV 135 (260)
T TIGR01361 81 LRRAADEHGLPVVTEV-MDPRDVEIVAE-Y-ADILQIGARNMQNFELLKEVGKQGKPV 135 (260)
T ss_pred HHHHHHHhCCCEEEee-CChhhHHHHHh-h-CCEEEECcccccCHHHHHHHhcCCCcE
Confidence 3445555676777632 36777766654 3 7999999999999999988765 6666
No 428
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=33.24 E-value=1.2e+02 Score=23.54 Aligned_cols=44 Identities=30% Similarity=0.241 Sum_probs=30.4
Q ss_pred HHHHHHcCCeEEEeCCC-C------HHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 15 LLMRKAFKGTFLVAGGY-D------REDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 15 ~~ir~~~~~pvi~~Ggi-~------~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
+.+-+....||+.+||- + .+...+++++| +--+++||-..-.++
T Consensus 195 ~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aG-a~G~~~GRNifQ~~~ 245 (265)
T COG1830 195 RRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAG-AMGVAVGRNIFQHED 245 (265)
T ss_pred HHHHHhCCCCEEEeCCCCCCChHHHHHHHHHHHHcc-CcchhhhhhhhccCC
Confidence 33333345699999997 2 33456777787 578999998877664
No 429
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=33.07 E-value=1.1e+02 Score=23.46 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
....+++..++||++.=.+ ++.+...+++.+.+|++.+
T Consensus 214 ~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~ 252 (324)
T TIGR01928 214 MLDELAKGTITPICLDESITSLDDARNLIELGNVKVINI 252 (324)
T ss_pred HHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence 4567888888888775555 8999999999998998754
No 430
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=32.88 E-value=1.1e+02 Score=22.14 Aligned_cols=17 Identities=6% Similarity=0.129 Sum_probs=9.9
Q ss_pred HHHHHHcCCeEEEeCCC
Q 046574 15 LLMRKAFKGTFLVAGGY 31 (104)
Q Consensus 15 ~~ir~~~~~pvi~~Ggi 31 (104)
-.|++.+++|++++|+.
T Consensus 56 vKi~ekfnipivaTa~~ 72 (170)
T COG1880 56 VKIIEKFNIPIVATASS 72 (170)
T ss_pred HHHHHhcCCceEecchh
Confidence 34555566666666654
No 431
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=32.88 E-value=51 Score=23.25 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=28.2
Q ss_pred HHHHHHcC--CeEEEeCCC--C-HHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 15 LLMRKAFK--GTFLVAGGY--D-REDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 15 ~~ir~~~~--~pvi~~Ggi--~-~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+.+++..+ ..||++||+ + -+-..+++.+ ++++++.-|+++.++++.
T Consensus 50 ~~l~~~~~~~dlVIttGG~G~t~~D~t~ea~~~------~~~~~l~~~~e~~~~i~~ 100 (170)
T cd00885 50 EALRRASERADLVITTGGLGPTHDDLTREAVAK------AFGRPLVLDEEALERIEA 100 (170)
T ss_pred HHHHHHHhCCCEEEECCCCCCCCCChHHHHHHH------HhCCCcccCHHHHHHHHH
Confidence 34444333 378888998 3 3344555542 257788888888766654
No 432
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=32.46 E-value=95 Score=25.33 Aligned_cols=37 Identities=14% Similarity=-0.017 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
....+++..++||++.=.+ ++.++..+++.+.+|++.
T Consensus 270 ~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~ 307 (441)
T TIGR03247 270 VMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPL 307 (441)
T ss_pred HHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEe
Confidence 3557888888898775444 899999999999888854
No 433
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=31.92 E-value=57 Score=27.74 Aligned_cols=45 Identities=18% Similarity=0.176 Sum_probs=28.6
Q ss_pred CCeEEEeCCCCHHHHHHHHHcCCCc--EEecchHH-----hhCCcHHHHHhh
Q 046574 22 KGTFLVAGGYDREDGNKAIAEGRAD--LVVYGRFF-----LANPDLPRRFEF 66 (104)
Q Consensus 22 ~~pvi~~Ggi~~~~ae~~l~~g~~D--lVa~gR~~-----lanPdl~~ri~~ 66 (104)
..|+|++|||+++...++++..... .|=+...+ +.|++.+..+.+
T Consensus 159 ~~p~iLAGGL~peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~~ki~~fi~ 210 (610)
T PRK13803 159 KFPFFLSGGLSPTNFDRIINLTHPQILGIDVSSGFEDSPGNKKLTLLKSFIT 210 (610)
T ss_pred CCcEEEEeCCCHHHHHHHHhhhCCCceEEEccCcccCCCCCcCHHHHHHHHH
Confidence 4589999999999999999754333 33332222 456655544443
No 434
>PRK00208 thiG thiazole synthase; Reviewed
Probab=31.77 E-value=63 Score=24.77 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=24.4
Q ss_pred eEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 24 TFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 24 pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
.++.+|.+ +++.++++|....+++|-++
T Consensus 13 l~~Gtgky~s~~~~~~ai~asg~~ivTva 41 (250)
T PRK00208 13 LLLGTGKYPSPQVMQEAIEASGAEIVTVA 41 (250)
T ss_pred ceEecCCCCCHHHHHHHHHHhCCCeEEEE
Confidence 57888999 99999999998779997765
No 435
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=31.65 E-value=1.1e+02 Score=25.27 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=34.3
Q ss_pred hHHHHHHHHcC------CeEEEeCCCCHHHHHHHHHcCC-CcEEecchHHhh
Q 046574 12 HSLLLMRKAFK------GTFLVAGGYDREDGNKAIAEGR-ADLVVYGRFFLA 56 (104)
Q Consensus 12 ~~~~~ir~~~~------~pvi~~Ggi~~~~ae~~l~~g~-~DlVa~gR~~la 56 (104)
...+.+|++++ ..+|.++|++.+.+.++.++|. +|..++|..++.
T Consensus 261 ~l~~~vr~~ld~~G~~~vkIi~S~gLde~~i~~l~~~g~~~d~fGvGt~L~t 312 (443)
T TIGR01513 261 YLSKQARKQLDAAGLTQVKIVVSNDLDENSIAALKAEGAPIDVYGVGTSLVT 312 (443)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHCCCceeEEecCcceee
Confidence 45556666652 3689999999999998887653 689999999983
No 436
>PRK14017 galactonate dehydratase; Provisional
Probab=31.64 E-value=1.1e+02 Score=24.01 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=28.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+....+++....||++.=.+ ++.++..+++.+.+|+|-+
T Consensus 218 ~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~ 257 (382)
T PRK14017 218 EALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQP 257 (382)
T ss_pred HHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEec
Confidence 34556777777787765555 8888888888888887654
No 437
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=31.62 E-value=1e+02 Score=24.59 Aligned_cols=37 Identities=16% Similarity=0.044 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
....+++..+.||++.=.+ +.+++.++++.+.+|++-
T Consensus 252 ~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~ 289 (395)
T cd03323 252 GMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPL 289 (395)
T ss_pred HHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEe
Confidence 4456777777787664445 778888888888788753
No 438
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=31.56 E-value=64 Score=25.00 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=24.5
Q ss_pred eEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 24 TFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 24 pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
.++.+|.+ |++.++++|....+++|-++
T Consensus 19 L~lGTgky~s~~~~~~ai~aSg~evvTva 47 (267)
T CHL00162 19 LMLGTGKYKSLKDAIQSIEASGCEIVTVA 47 (267)
T ss_pred eEEecCCCCCHHHHHHHHHHhCCcEEEEE
Confidence 67888999 99999999998779997775
No 439
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=31.55 E-value=1.4e+02 Score=20.30 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=26.8
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
...+.+++....|+|+..+. +.+....+++.|..|++.
T Consensus 63 ~~~~~lr~~~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~ 101 (221)
T PRK10766 63 MLTRELRSRSTVGIILVTGRTDSIDRIVGLEMGADDYVT 101 (221)
T ss_pred HHHHHHHhCCCCCEEEEECCCcHHHHHHHHHcCCCcEEe
Confidence 45566776555677776666 788888889999766654
No 440
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=31.46 E-value=1.2e+02 Score=23.59 Aligned_cols=39 Identities=10% Similarity=-0.032 Sum_probs=29.4
Q ss_pred hHHHHHHHH--cCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKA--FKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~--~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+....+++. .++||++.=.+ +..++.++++.+.+|+|-+
T Consensus 223 ~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~ 264 (352)
T cd03328 223 AGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQA 264 (352)
T ss_pred HHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEec
Confidence 345568888 77787775445 8999999999888887754
No 441
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=31.33 E-value=71 Score=24.48 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=23.1
Q ss_pred CeEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 23 GTFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
-.++.+|.+ |++.+++++....+++|-++
T Consensus 10 RL~lGTgky~s~~~m~~ai~aSg~evvTva 39 (247)
T PF05690_consen 10 RLILGTGKYPSPEVMREAIEASGAEVVTVA 39 (247)
T ss_dssp SEEEE-STSSSHHHHHHHHHHTT-SEEEEE
T ss_pred ceEEecCCCCCHHHHHHHHHHhCCcEEEEE
Confidence 368888999 99999999998889987665
No 442
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=31.03 E-value=46 Score=22.71 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=33.3
Q ss_pred EEeCCC--CHHHHHHHHHcCCCcEEec-chHHhhCCcHHHHHhhC
Q 046574 26 LVAGGY--DREDGNKAIAEGRADLVVY-GRFFLANPDLPRRFEFN 67 (104)
Q Consensus 26 i~~Ggi--~~~~ae~~l~~g~~DlVa~-gR~~lanPdl~~ri~~g 67 (104)
++.|+- |.++.+++++++ ..+|-+ ||....||+-+.++..-
T Consensus 77 lalGd~~Ls~eEf~~L~~~~-~~LV~~rg~WV~ld~~~l~~~~~~ 120 (141)
T PF12419_consen 77 LALGDEELSEEEFEQLVEQK-RPLVRFRGRWVELDPEELRRALAF 120 (141)
T ss_pred EEECCEECCHHHHHHHHHcC-CCeEEECCEEEEECHHHHHHHHHH
Confidence 444554 999999999877 588887 89999999999888763
No 443
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=30.95 E-value=1.3e+02 Score=23.10 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=31.5
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+....+++....||++.=.+ ++.+...+++.+.+|+|.+
T Consensus 207 ~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~i 246 (320)
T PRK02714 207 DEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVI 246 (320)
T ss_pred HHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEE
Confidence 34556888888898887666 9999999999999997754
No 444
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=30.88 E-value=78 Score=24.52 Aligned_cols=37 Identities=27% Similarity=0.251 Sum_probs=23.2
Q ss_pred HHHHHHHHcC--CeEEEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFK--GTFLVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~--~pvi~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
.++.+|+.++ .|+|.+|.=+.-.|..+...| +|||.+
T Consensus 3 il~~l~~~i~~~~pIig~gaGtGlsAk~ae~gG-aDlI~~ 41 (268)
T PF09370_consen 3 ILDRLRAQIKAGKPIIGAGAGTGLSAKCAEKGG-ADLILI 41 (268)
T ss_dssp HHHHHHHHHHTT--EEEEEESSHHHHHHHHHTT--SEEEE
T ss_pred HHHHHHHHHhCCCceEEEeeccchhhHHHHhcC-CCEEEE
Confidence 4566777764 488877655777776665544 899876
No 445
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=30.86 E-value=1.3e+02 Score=23.17 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=25.8
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
....+++..+.||++.=.+ ++++...+++.|.+|.|-+
T Consensus 219 ~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~i 257 (354)
T cd03317 219 DHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINI 257 (354)
T ss_pred HHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence 3455677777777665444 7777888887777776644
No 446
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=30.77 E-value=1.3e+02 Score=24.38 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=31.2
Q ss_pred HHHHHHHH-----cCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKA-----FKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~-----~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
....+++. .++||++.=.+ +++++..++..+.+|+|-+
T Consensus 283 ~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~i 326 (408)
T TIGR01502 283 AMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQI 326 (408)
T ss_pred HHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEe
Confidence 44567777 47798887666 8999999999999999876
No 447
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=30.55 E-value=1.2e+02 Score=23.43 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
....+++..++|+++.=.+ +..+..++++.+.+|+|-+
T Consensus 213 ~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~ 251 (341)
T cd03327 213 GYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQP 251 (341)
T ss_pred HHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEec
Confidence 4556788877887765455 8888888988888888754
No 448
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=30.44 E-value=1.2e+02 Score=24.10 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=27.3
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
....+++...+||++.=.+ ++.+++.+++.+.+|+|-+
T Consensus 248 ~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 248 AFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred HHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEec
Confidence 4456777777787665444 7888888888888887654
No 449
>PF13941 MutL: MutL protein
Probab=30.38 E-value=70 Score=26.51 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=38.8
Q ss_pred hHHHHHHHH-cCCeEEEeCCC-CHHHHHHHHHcCCCcEEec--------------chHHhhCCcHHHHHhhCCCC
Q 046574 12 HSLLLMRKA-FKGTFLVAGGY-DREDGNKAIAEGRADLVVY--------------GRFFLANPDLPRRFEFNAPL 70 (104)
Q Consensus 12 ~~~~~ir~~-~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~--------------gR~~lanPdl~~ri~~g~~l 70 (104)
+.++.+.+. ++.|||.+|+. -.++++++++++..+++.. +|..|.+= |.+++.+..-+
T Consensus 144 ~nA~~La~~~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~-F~~~Ii~akGl 217 (457)
T PF13941_consen 144 HNAEMLAEANLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREV-FLRHIIQAKGL 217 (457)
T ss_pred HHHHHHHhCCCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHH-HHHHHhcCCCH
Confidence 556666553 45699999999 6788899998666777665 56666554 44555554443
No 450
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=30.29 E-value=55 Score=25.61 Aligned_cols=53 Identities=25% Similarity=0.283 Sum_probs=38.1
Q ss_pred HHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhhCCC
Q 046574 17 MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEFNAP 69 (104)
Q Consensus 17 ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~g~~ 69 (104)
++.....++++.||. .....++++..+.+|+|.+|=+=..-+.+...+..+..
T Consensus 96 ~~~~~~~~~v~~GG~~~t~~~~~~~~~~~~D~iv~GeGE~~~~~~~~~~~~~~~ 149 (490)
T COG1032 96 ARGRRDKPLVVVGGPEATENPEPLLDFGPADIIVIGEGEETLPELLEALEEGED 149 (490)
T ss_pred HhcccCCCeEEecCCCcCCCcHHHHhhcCCCEEEEcCchHHHHHHHHHHhcccc
Confidence 333334477888888 44556677766657999999988888888888877653
No 451
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.00 E-value=85 Score=23.89 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=30.2
Q ss_pred hHHHHHHHHcC---CeEEEeCCC---CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFK---GTFLVAGGY---DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~---~pvi~~Ggi---~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
++....++.-+ ++.|.+|-- +-..+.+.+++|..|+|-+|-||
T Consensus 7 ~TFa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPf 55 (268)
T KOG4175|consen 7 ETFARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPF 55 (268)
T ss_pred HHHHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCcc
Confidence 34445555543 277887776 34567788889999999999876
No 452
>PF12728 HTH_17: Helix-turn-helix domain
Probab=29.94 E-value=49 Score=18.06 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 31 YDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 31 i~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
++...+.+.+.+|.+-.+..||.+..+.+-+.++.+
T Consensus 13 is~~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (51)
T PF12728_consen 13 ISRSTVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLE 48 (51)
T ss_pred cCHHHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHH
Confidence 355556666666665555566655555555555443
No 453
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=29.69 E-value=1.7e+02 Score=22.58 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=33.6
Q ss_pred hHHHHHHHHc-CCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAF-KGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~-~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.++.|++.+ ++|+.+-||- +.++.++++..| +--|=++..+
T Consensus 194 ~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~T~~ 238 (287)
T PF01116_consen 194 DRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNG-ISKINIGTEL 238 (287)
T ss_dssp HHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTT-EEEEEESHHH
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcC-ceEEEEehHH
Confidence 5778899999 9999999987 778899999988 5666666544
No 454
>PF00274 Glycolytic: Fructose-bisphosphate aldolase class-I; InterPro: IPR000741 Fructose-bisphosphate aldolase (4.1.2.13 from EC) [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms: class I enzymes [] do not require a metal ion, and are characterised by the formation of a Schiff base intermediate between a highly conserved active site lysine and a substrate carbonyl group, while the class II enzymes require an active-site divalent metal ion. This entry represents the class I enzymes. In vertebrates, three forms of this enzyme are found: aldolase A is expressed in muscle, aldolase B in liver, kidney, stomach and intestine, and aldolase C in brain, heart and ovary. The different isozymes have different catalytic functions: aldolases A and C are mainly involved in glycolysis, while aldolase B is involved in both glycolysis and gluconeogenesis. Defects in aldolase B result in hereditary fructose intolerance.; GO: 0004332 fructose-bisphosphate aldolase activity, 0006096 glycolysis; PDB: 1EX5_B 6ALD_D 2QUU_B 3DFN_B 1ADO_B 3DFO_A 1ZAL_A 1J4E_C 3DFP_A 1ZAJ_B ....
Probab=29.67 E-value=68 Score=25.74 Aligned_cols=45 Identities=16% Similarity=0.386 Sum_probs=29.7
Q ss_pred HHHHHHHHcC----CeEEEeCCCCHHHHHHHHHcC-CCc-------EEecchHHhhC
Q 046574 13 SLLLMRKAFK----GTFLVAGGYDREDGNKAIAEG-RAD-------LVVYGRFFLAN 57 (104)
Q Consensus 13 ~~~~ir~~~~----~pvi~~Ggi~~~~ae~~l~~g-~~D-------lVa~gR~~lan 57 (104)
++..++..+. +.|+++||.+.++|..-|+.- ..+ -.+|||.+-..
T Consensus 238 T~~~l~~~vP~aVpgIvFLSGGqs~e~At~~Lna~n~~~~~~PW~lsFSfgRALq~~ 294 (348)
T PF00274_consen 238 TVRALRRTVPAAVPGIVFLSGGQSEEEATANLNAINKMPGNKPWPLSFSFGRALQES 294 (348)
T ss_dssp HHHHHHHHSBTTSSEEEEB-TTS-HHHHHHHHHHHHHSSS--SSEEEEEESHHHHHH
T ss_pred HHHHHHHhcccccceeEecCCCCCHHHHHHHHHHhhCCCcCCChheeEEechhhhHH
Confidence 4455666653 369999999999888777642 111 57899998765
No 455
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=29.61 E-value=1.4e+02 Score=23.39 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
....+++....||++.=.+ ++..+..++..+.+|++-+
T Consensus 205 ~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~ 243 (361)
T cd03322 205 AFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRT 243 (361)
T ss_pred HHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEec
Confidence 4456777777776664444 7888888888877776654
No 456
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=29.48 E-value=1.1e+02 Score=23.52 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=31.4
Q ss_pred HHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 15 LLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 15 ~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+.+++.++.| |..-.+.++.|+.+|+.| +|+|-=-.++ .+|+....++.
T Consensus 83 ~~l~~~~~~~-ISIDT~~~~va~~AL~~G-adiINDI~g~-~d~~~~~~~a~ 131 (282)
T PRK11613 83 EAIAQRFEVW-ISVDTSKPEVIRESAKAG-AHIINDIRSL-SEPGALEAAAE 131 (282)
T ss_pred HHHHhcCCCe-EEEECCCHHHHHHHHHcC-CCEEEECCCC-CCHHHHHHHHH
Confidence 3344444444 566667999999999998 7998211122 47776665544
No 457
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=29.42 E-value=75 Score=20.10 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=18.8
Q ss_pred cCCeEEEeCCCCHHHHHHHHHc
Q 046574 21 FKGTFLVAGGYDREDGNKAIAE 42 (104)
Q Consensus 21 ~~~pvi~~Ggi~~~~ae~~l~~ 42 (104)
.+.|||-+-|.|+++..+.|++
T Consensus 56 ~~~pVInA~G~T~eEI~~~v~~ 77 (80)
T PF03698_consen 56 TKVPVINASGLTAEEIVQEVEE 77 (80)
T ss_pred cCceEEecCCCCHHHHHHHHHH
Confidence 4579999999999999888864
No 458
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=29.30 E-value=74 Score=24.37 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=25.0
Q ss_pred CeEEEeCCC-CHHHHHHHHHcCCCcEEecch
Q 046574 23 GTFLVAGGY-DREDGNKAIAEGRADLVVYGR 52 (104)
Q Consensus 23 ~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR 52 (104)
-.++.+|.+ +++.+.++|....+++|-++-
T Consensus 11 Rl~~Gtgky~s~~~~~~ai~aSg~~ivTva~ 41 (248)
T cd04728 11 RLLLGTGKYPSPAIMKEAIEASGAEIVTVAL 41 (248)
T ss_pred ceEEecCCCCCHHHHHHHHHHhCCCEEEEEE
Confidence 357888999 999999999877789977763
No 459
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=29.30 E-value=1e+02 Score=24.12 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=42.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh-hCCCC
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE-FNAPL 70 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~-~g~~l 70 (104)
..++.+++.++.||++ .+ ++++++.+.+- +|++-+|--+..|-||...+. .|+++
T Consensus 77 ~iL~~vk~~~glpvvT--eV~~~~q~~~vae~--~DilQIgAr~~rqtdLL~a~~~tgkpV 133 (290)
T PLN03033 77 KILEKVKVAYDLPIVT--DVHESSQCEAVGKV--ADIIQIPAFLCRQTDLLVAAAKTGKII 133 (290)
T ss_pred HHHHHHHHHHCCceEE--eeCCHHHHHHHHhh--CcEEeeCcHHHHHHHHHHHHHccCCeE
Confidence 3567788888888876 45 88888777653 799999999999999986654 36666
No 460
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=28.80 E-value=1.6e+02 Score=22.75 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=38.2
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
+.++.+++..+..+.+--|+ +.+.++++-.++ +|.|++- |+.|.|...++-
T Consensus 78 d~lK~lke~~~l~inaHvGfvdE~~~eklk~~~-vdvvsLD--fvgDn~vIk~vy 129 (275)
T COG1856 78 DELKALKERTGLLINAHVGFVDESDLEKLKEEL-VDVVSLD--FVGDNDVIKRVY 129 (275)
T ss_pred HHHHHHHHhhCeEEEEEeeeccHHHHHHHHHhc-CcEEEEe--ecCChHHHHHHH
Confidence 35566777777677777787 867777776665 8999987 888988887764
No 461
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=28.75 E-value=1.4e+02 Score=22.81 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=29.9
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+....+++....||++.=.+ ++.+...+++.+.+|+|.+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~i 235 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVI 235 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEE
Confidence 34556788888888776666 8899999998888887755
No 462
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=28.65 E-value=1.7e+02 Score=21.67 Aligned_cols=42 Identities=12% Similarity=0.032 Sum_probs=26.6
Q ss_pred cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
++..+.++-|. +.+.++.+-+.| +|.|.++-- .+|+.-.++.
T Consensus 110 ~~i~~~~~~g~~~~e~l~~Lk~aG-~~~v~i~~E--~~~~~~~~i~ 152 (296)
T TIGR00433 110 MGLKTCATLGLLDPEQAKRLKDAG-LDYYNHNLD--TSQEFYSNII 152 (296)
T ss_pred CCCeEEecCCCCCHHHHHHHHHcC-CCEEEEccc--CCHHHHhhcc
Confidence 44444444334 888877777777 688888755 4666666554
No 463
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=28.53 E-value=1.8e+02 Score=20.20 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=25.7
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
..++.+++..+.|+|...+. +.+....+++.|..|++.
T Consensus 62 ~~~~~ir~~~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~ 100 (240)
T PRK10701 62 TICRDLRPKWQGPIVLLTSLDSDMNHILALEMGACDYIL 100 (240)
T ss_pred HHHHHHHhcCCCCEEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 45566777556676665554 777777888888766654
No 464
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.38 E-value=1.1e+02 Score=23.58 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=31.8
Q ss_pred chHHHHHHHHcCC-eEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHh
Q 046574 11 PHSLLLMRKAFKG-TFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFE 65 (104)
Q Consensus 11 ~~~~~~ir~~~~~-pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~ 65 (104)
......+|+..+- .-|.+---|.++++++++.| +|.|.+.. -.|+-++++.
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~G-aD~I~LDn---~~~e~l~~av 234 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEYG-ADIIMLDN---MPVDLMQQAV 234 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcC-CCEEEECC---CCHHHHHHHH
Confidence 3445567776652 22333323899999999888 79999982 3344444433
No 465
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.25 E-value=1.3e+02 Score=22.84 Aligned_cols=43 Identities=28% Similarity=0.148 Sum_probs=33.6
Q ss_pred chHHHHHHHHcC-CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHh
Q 046574 11 PHSLLLMRKAFK-GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFL 55 (104)
Q Consensus 11 ~~~~~~ir~~~~-~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~l 55 (104)
+...+++|+..+ .||.+.=|+ ++|...++- .++|-|.+|...+
T Consensus 195 ~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVg--svaDGVvvGSkiv 239 (268)
T KOG4175|consen 195 QSLLQRVRKATGDTPLAVGFGVSTPEHFKQVG--SVADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHHhcCCCceeEeeccCCHHHHHhhh--hhccceEecHHHH
Confidence 457788999984 588887788 888887764 3589999998765
No 466
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=27.83 E-value=2.1e+02 Score=22.01 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=33.9
Q ss_pred hHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+.++.|++.+++|+.+-||- +.++.+++++.| +--|-++..+
T Consensus 186 ~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~G-i~KiNi~T~l 229 (276)
T cd00947 186 DRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLG-VCKININTDL 229 (276)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcC-CeEEEeChHH
Confidence 46678999999999999887 678899999988 5677776654
No 467
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial homologs of mammalian GDE4, a transmembrane protein whose cellular function has not been elucidated yet.
Probab=27.82 E-value=1.3e+02 Score=23.66 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=28.1
Q ss_pred cCCeEEEeC---------CC-CHHHHHHHHHcCCCcEEecchHHhhCC
Q 046574 21 FKGTFLVAG---------GY-DREDGNKAIAEGRADLVVYGRFFLANP 58 (104)
Q Consensus 21 ~~~pvi~~G---------gi-~~~~ae~~l~~g~~DlVa~gR~~lanP 58 (104)
.+..|++.| +| ++++++++++.| .|.|.--|+-+..|
T Consensus 263 ~g~~V~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~gi~T~r~~~l~~ 309 (309)
T cd08613 263 AGTRVILVGPYTGGEFSEGFDTPEDLKRLPEGF-TGYIWTNKIEALAP 309 (309)
T ss_pred cCCeEEEEecccCCcccCCCCCHHHHHHHHhhC-CCeEEeCCHhhcCC
Confidence 466888886 57 899999999877 68887777655443
No 468
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=27.77 E-value=2e+02 Score=20.41 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=26.4
Q ss_pred HHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecch
Q 046574 13 SLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYGR 52 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR 52 (104)
.++.+.+..+..|-..-+-+..+..+.+.+|.+|++..+-
T Consensus 54 l~~~l~~~~g~~v~~~~~~~~~~~~~~l~~g~~Di~~~~~ 93 (254)
T TIGR01098 54 LADYLEKKLGIKVQLFVATDYSAVIEAMRFGRVDIAWFGP 93 (254)
T ss_pred HHHHHHHHhCCcEEEEeCCCHHHHHHHHHcCCccEEEECc
Confidence 3445566666665554333566777888999999987653
No 469
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.73 E-value=1.8e+02 Score=22.26 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=36.1
Q ss_pred cchHHHHHHHHcC-CeEEEeCCCCHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 10 CPHSLLLMRKAFK-GTFLVAGGYDREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 10 ~~~~~~~ir~~~~-~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
+....+.+|+.++ ...|.+---+.++++++++.| +|.|++.. ..|+-..++..
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~g-aDyI~lD~---~~~e~l~~~~~ 227 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAG-ADIIMFDN---RTPDEIREFVK 227 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcC-CCEEEECC---CCHHHHHHHHH
Confidence 3445567788775 334444444899999999877 79999953 45566666665
No 470
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.63 E-value=1.7e+02 Score=22.87 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=29.1
Q ss_pred chHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCC
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGR 44 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~ 44 (104)
...++.|++.++.|+..-||- +.++.+++|+-|.
T Consensus 193 ~~~L~~i~~~~~~PlVlHGgSGip~~eI~~aI~~GV 228 (286)
T COG0191 193 FDRLKEIQEAVSLPLVLHGGSGIPDEEIREAIKLGV 228 (286)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHhCc
Confidence 356788999999999998886 8889999999884
No 471
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=27.55 E-value=1.3e+02 Score=24.15 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCeEEEeCCC--C----HHHHHHH---HHcCCCcEEecchHHhhCCc
Q 046574 22 KGTFLVAGGY--D----REDGNKA---IAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 22 ~~pvi~~Ggi--~----~~~ae~~---l~~g~~DlVa~gR~~lanPd 59 (104)
..||+.+||- + .+.++++ ++.| +--|++||-..-.|+
T Consensus 281 ~vpVviAGG~k~~~~e~L~~v~~a~~~i~aG-a~Gv~iGRNIfQ~~~ 326 (348)
T PRK09250 281 RRGLINSGGASKGEDDLLDAVRTAVINKRAG-GMGLIIGRKAFQRPM 326 (348)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHhhhcC-CcchhhchhhhcCCc
Confidence 3589999997 3 3456777 7766 689999999888774
No 472
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=27.54 E-value=1.6e+02 Score=23.85 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=28.9
Q ss_pred hHHHHHHHHcCCeEEEeCCCCHHHHHHHHHcCCCcEEecc
Q 046574 12 HSLLLMRKAFKGTFLVAGGYDREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi~~~~ae~~l~~g~~DlVa~g 51 (104)
+.++.|.+..+..+-..--.+.+++...|++|.+|+++.+
T Consensus 69 DLl~~ia~~LGv~~e~v~~~~~~~ll~aL~~G~iDi~~~~ 108 (482)
T PRK10859 69 ELAKRFADYLGVKLEIKVRDNISQLFDALDKGKADLAAAG 108 (482)
T ss_pred HHHHHHHHHhCCcEEEEecCCHHHHHHHHhCCCCCEEecc
Confidence 4667777777765544422267889999999999987654
No 473
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=27.42 E-value=1.7e+02 Score=19.90 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=26.1
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
...+.+++.-..|+|...+. +.+....+++.|..|++.
T Consensus 62 ~~~~~lr~~~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~ 100 (225)
T PRK10529 62 EFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLS 100 (225)
T ss_pred HHHHHHHcCCCCCEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 45566766445677666665 788888899999766553
No 474
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=27.12 E-value=1.2e+02 Score=23.66 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=27.3
Q ss_pred CcchHHHHHHHHcCCeE-EEeCCCCHHHHHHHHHcCCCcEEec
Q 046574 9 ECPHSLLLMRKAFKGTF-LVAGGYDREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 9 ~~~~~~~~ir~~~~~pv-i~~Ggi~~~~ae~~l~~g~~DlVa~ 50 (104)
++.+-.++.|+..+-.. |-+=-=|.++++++++.| +|.|.+
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag-aDiImL 214 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAG-ADIIML 214 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcC-CCEEEe
Confidence 34445566777665423 443323899999999998 799876
No 475
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=27.11 E-value=69 Score=21.36 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=25.7
Q ss_pred eEEEeCCCCHHHHHHHHHc--CCCcEEecchHHhhCCcHHHHHhh
Q 046574 24 TFLVAGGYDREDGNKAIAE--GRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~--g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
|+.+..|...++..+.+++ ...+-|.+|+|++.+++...++..
T Consensus 77 Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~pLl~~~~d~~~v~~ 121 (127)
T cd03412 77 SLHIIPGEEYEKLKREVDAFKKGFKKIKLGRPLLYSPEDYEEVAA 121 (127)
T ss_pred eCeeECcHHHHHHHHHHHHHhCCCceEEEccCCCCCHHHHHHHHH
Confidence 5555555533444444432 224567888888888887776654
No 476
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=26.95 E-value=1.5e+02 Score=24.65 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=33.9
Q ss_pred chHHHHHHHHcCCeEEEeCCC--CHHHHHHHHHcCC-----CcEEecchHHhhCCcHHH
Q 046574 11 PHSLLLMRKAFKGTFLVAGGY--DREDGNKAIAEGR-----ADLVVYGRFFLANPDLPR 62 (104)
Q Consensus 11 ~~~~~~ir~~~~~pvi~~Ggi--~~~~ae~~l~~g~-----~DlVa~gR~~lanPdl~~ 62 (104)
++....+|+......|++=|+ -...+++++..|. --+|-++|..+..++-.+
T Consensus 191 p~~~~~iR~~~p~~~iL~PGiGAQGg~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~ 249 (477)
T PRK05500 191 PEVLAKIRQIAPERLILLRSIWAEKGNLNQILTAGLNSNGDGLLIPVPQDLLGAANLKE 249 (477)
T ss_pred hHHHHHHHHhCCCCEEEccccccCCCCHHHHHHhhcccCcCceEEEeCHHHhcCCCHHH
Confidence 345677888765556777777 2223555555542 239999999998887443
No 477
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=26.52 E-value=2.3e+02 Score=21.59 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=17.1
Q ss_pred eEEEeCCCCHHHHHHHHHcCCCcE
Q 046574 24 TFLVAGGYDREDGNKAIAEGRADL 47 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g~~Dl 47 (104)
.+|..||++++.+++++..|.-++
T Consensus 172 ~Im~GgGV~~~Nv~~l~~tG~~~~ 195 (248)
T PRK11572 172 IIMAGAGVRLSNLHKFLDAGVREV 195 (248)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEE
Confidence 367778888888888877674333
No 478
>PLN02885 nicotinate phosphoribosyltransferase
Probab=26.46 E-value=94 Score=26.36 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=29.6
Q ss_pred eEEEeCCCCHHHHHHHHHcC-CCcEEecchHHhhC
Q 046574 24 TFLVAGGYDREDGNKAIAEG-RADLVVYGRFFLAN 57 (104)
Q Consensus 24 pvi~~Ggi~~~~ae~~l~~g-~~DlVa~gR~~lan 57 (104)
.++++++++.+.+.++.++| .+|..++|.-++.+
T Consensus 350 kIv~Sn~Lde~~i~~L~~~g~~id~fGVGT~LvT~ 384 (545)
T PLN02885 350 SITASNDINEETLDALNKQGHEIDAFGIGTHLVTC 384 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCccEEecCCccccC
Confidence 48999999999999998775 37999999999887
No 479
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=26.41 E-value=43 Score=24.64 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=6.5
Q ss_pred HHHHHcCCeEE-EeCC
Q 046574 16 LMRKAFKGTFL-VAGG 30 (104)
Q Consensus 16 ~ir~~~~~pvi-~~Gg 30 (104)
.+.+.+++|+| ++++
T Consensus 122 ~ilr~vdIP~IiVcq~ 137 (194)
T TIGR03264 122 LILKHVDIPAIIVCQA 137 (194)
T ss_pred HHHhcCCCCEEEEeCC
Confidence 34444455544 3343
No 480
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=26.32 E-value=2e+02 Score=22.17 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=30.7
Q ss_pred eEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHH
Q 046574 24 TFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPR 62 (104)
Q Consensus 24 pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ 62 (104)
.|++-.|| ||+++...-.+| +..|.+|-.++...|--.
T Consensus 239 ilva~SGi~tpdDia~~q~~G-V~avLVGEslmk~sDp~k 277 (289)
T KOG4201|consen 239 ILVALSGIFTPDDIAKYQKAG-VKAVLVGESLMKQSDPKK 277 (289)
T ss_pred EEEeccCCCCHHHHHHHHHcC-ceEEEecHHHHhccCHHH
Confidence 45666778 999999998888 799999999998777533
No 481
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=26.28 E-value=1.7e+02 Score=22.77 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
....+++....||++.=.+ ++.+...+++.+.+|+|-+
T Consensus 229 ~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~ 267 (368)
T TIGR02534 229 ALARLTRRFNVPIMADESVTGPADALAIAKASAADVFAL 267 (368)
T ss_pred HHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEE
Confidence 3445777777777775555 7888888888777787655
No 482
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=26.19 E-value=1.3e+02 Score=24.04 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCeEEEe-CCC--CHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVA-GGY--DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~-Ggi--~~~~ae~~l~~g~~DlVa~ 50 (104)
....+++..+.|+.++ |-- +..++.++++.+.+|+|-+
T Consensus 250 ~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~ 290 (394)
T PRK15440 250 GYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQP 290 (394)
T ss_pred HHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeC
Confidence 4556777776555444 322 7888888988888887654
No 483
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=26.17 E-value=2e+02 Score=21.83 Aligned_cols=47 Identities=28% Similarity=0.173 Sum_probs=33.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCc
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPD 59 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPd 59 (104)
..+..+++.++.|+..--=| ++-+..++-..| +|.|.+=-.+|.+-.
T Consensus 99 ~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~G-ADaVLLI~~~L~~~~ 146 (254)
T PF00218_consen 99 EDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAG-ADAVLLIAAILSDDQ 146 (254)
T ss_dssp HHHHHHHHHSSS-EEEES---SHHHHHHHHHTT--SEEEEEGGGSGHHH
T ss_pred HHHHHHHHHhCCCcccccCCCCHHHHHHHHHcC-CCEeehhHHhCCHHH
Confidence 35567888889999998888 999999998888 788777555554433
No 484
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=25.74 E-value=1.8e+02 Score=19.60 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=26.7
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
...+.+++....|+|...+. +.+....+++.|..|++.-
T Consensus 61 ~~~~~l~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~k 100 (223)
T PRK11517 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVK 100 (223)
T ss_pred HHHHHHHcCCCCCEEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 34555665445677766666 8888889999997666544
No 485
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=25.40 E-value=1.8e+02 Score=22.65 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=27.4
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
....+++.+++||.+.=.+ +.++...++..+.+|+|.+
T Consensus 175 ~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~i 213 (327)
T PRK02901 175 ELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVL 213 (327)
T ss_pred HHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 4456777777787665455 7888888888888887654
No 486
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=25.39 E-value=1.4e+02 Score=23.99 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=20.5
Q ss_pred HHHHHHHHcCC---eEEEeCCCC----------HHHHHHHHHcCCCcEEe
Q 046574 13 SLLLMRKAFKG---TFLVAGGYD----------REDGNKAIAEGRADLVV 49 (104)
Q Consensus 13 ~~~~ir~~~~~---pvi~~Ggi~----------~~~ae~~l~~g~~DlVa 49 (104)
..+.+|+.++. .++.+|.+. -..|+.+|..| +|+|.
T Consensus 20 ~i~~~k~~~~ad~ii~vMSGnFvQRGEPAi~dKw~RA~~AL~~G-aDLVi 68 (388)
T PF05636_consen 20 QIEQAKKITGADVIIAVMSGNFVQRGEPAIIDKWTRAEMALKNG-ADLVI 68 (388)
T ss_dssp HHHHHH---TSSEEEEEE--TTSBTSSB-SS-HHHHHHHHHHHT--SEEE
T ss_pred HHHHHhccCCCCEEEEEECCCcccCCCeeeCCHHHHHHHHHHcC-CCEEE
Confidence 35667877763 455558861 45789999988 79874
No 487
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=25.25 E-value=1.7e+02 Score=23.45 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=39.8
Q ss_pred HHHHHHHHcC------CeEEEeCCCCHHHHHHHHHcCCCcEEecchHH----------hhCCcHHHHHhhCC
Q 046574 13 SLLLMRKAFK------GTFLVAGGYDREDGNKAIAEGRADLVVYGRFF----------LANPDLPRRFEFNA 68 (104)
Q Consensus 13 ~~~~ir~~~~------~pvi~~Ggi~~~~ae~~l~~g~~DlVa~gR~~----------lanPdl~~ri~~g~ 68 (104)
.+..|.++|+ +.+..+.|=|..+|..+++.=.+|+|-|+-.. +.+|||-.|+-+|.
T Consensus 55 ~n~aF~~~WkaetG~~Vti~qShGGSgkQaRsViDGl~ADVVtlal~~Did~i~~~g~li~~dW~~rlp~ns 126 (348)
T COG1613 55 YNPAFAKYWKAETGETVTIQQSHGGSGKQARSVIDGLEADVVTLALAYDIDAIAKAGGLIDKDWQKRLPNNS 126 (348)
T ss_pred HHHHHHHHHHHhcCCceEEEecCCCcchhhHhhccCcccceeeeehhhhHHHHHHhcCCCCcchHhhCcCCC
Confidence 4445555552 24556666689999999987789998886322 67889988888874
No 488
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=25.00 E-value=1e+02 Score=23.02 Aligned_cols=45 Identities=18% Similarity=0.081 Sum_probs=29.8
Q ss_pred cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHHhh
Q 046574 21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRFEF 66 (104)
Q Consensus 21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~ 66 (104)
.+..+++++.- -.+.+.++++.| .|++.+.-..+.++++.+++..
T Consensus 62 ~DvVvi~a~~~~~~~~~~~al~~G-k~Vvv~s~gAl~d~~~~~~L~~ 107 (265)
T PRK13304 62 VDLVVECASVNAVEEVVPKSLENG-KDVIIMSVGALADKELFLKLYK 107 (265)
T ss_pred CCEEEEcCChHHHHHHHHHHHHcC-CCEEEEchHHhcCHHHHHHHHH
Confidence 33344444332 466778888887 5888888888888887666543
No 489
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=24.93 E-value=90 Score=23.36 Aligned_cols=43 Identities=23% Similarity=0.110 Sum_probs=30.2
Q ss_pred cCCeEEEeCCC-CHHHHHHHHHcCCCcEEecchHHhhCCcHHHHH
Q 046574 21 FKGTFLVAGGY-DREDGNKAIAEGRADLVVYGRFFLANPDLPRRF 64 (104)
Q Consensus 21 ~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~lanPdl~~ri 64 (104)
.+..+++++.- -.+.++++|+.| .++|...-..++++++..++
T Consensus 62 ~DvVve~t~~~~~~e~~~~aL~aG-k~Vvi~s~~Al~d~~~~~~L 105 (265)
T PRK13303 62 PDLVVECAGHAALKEHVVPILKAG-IDCAVISVGALADEALRERL 105 (265)
T ss_pred CCEEEECCCHHHHHHHHHHHHHcC-CCEEEeChHHhcCHHHHHHH
Confidence 34445555544 567889999988 58888777778888775543
No 490
>PRK06256 biotin synthase; Validated
Probab=24.86 E-value=1.8e+02 Score=22.21 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=15.9
Q ss_pred HHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 17 MRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 17 ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
+++..+..+.++.|+ +.+.++.+-+.| ++.+.+
T Consensus 135 i~~~~~i~~~~~~g~l~~e~l~~LkeaG-~~~v~~ 168 (336)
T PRK06256 135 IKEETDLEICACLGLLTEEQAERLKEAG-VDRYNH 168 (336)
T ss_pred HHhcCCCcEEecCCcCCHHHHHHHHHhC-CCEEec
Confidence 333333344444444 555555555555 455544
No 491
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=24.83 E-value=2.2e+02 Score=20.44 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
....+++..+.|+++.=.+ +.++...++..+.+|.+-+
T Consensus 136 ~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 136 GYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred HHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEec
Confidence 4566888888898874445 8888888999998998865
No 492
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=24.80 E-value=2.4e+02 Score=19.55 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=24.5
Q ss_pred hHHHHHHHHcCCeEEEe-CCCCHHHHHHHHHcCCCcEEe
Q 046574 12 HSLLLMRKAFKGTFLVA-GGYDREDGNKAIAEGRADLVV 49 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~-Ggi~~~~ae~~l~~g~~DlVa 49 (104)
+.++.|.+..+..+-.+ ...........+++|++|+++
T Consensus 24 el~~~i~~~~g~~i~~~~~~~~~~~~~~~l~~g~~Di~~ 62 (232)
T TIGR03871 24 KIAQLLADDLGLPLEYTWFPQRRGFVRNTLNAGRCDVVI 62 (232)
T ss_pred HHHHHHHHHcCCceEEEecCcchhhHHHHHhcCCccEEE
Confidence 56667777777654333 333344455678899999974
No 493
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=24.51 E-value=2.2e+02 Score=19.37 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=26.0
Q ss_pred hHHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 12 HSLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
+..+.+++....|+|...+. +.+....+++.|..|++.
T Consensus 61 ~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~ 99 (232)
T PRK10955 61 DTLKELRQTHQTPVIMLTARGSELDRVLGLELGADDYLP 99 (232)
T ss_pred HHHHHHHhcCCCcEEEEECCCCHHHHHHHHHcCCCEEEc
Confidence 45566776555676666666 777788888888666554
No 494
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=24.31 E-value=1.1e+02 Score=23.24 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=31.5
Q ss_pred hHHHHHHHHcC--CeEEEeCCC-CHHHHHHHHHcCCCcEEecchHH
Q 046574 12 HSLLLMRKAFK--GTFLVAGGY-DREDGNKAIAEGRADLVVYGRFF 54 (104)
Q Consensus 12 ~~~~~ir~~~~--~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~gR~~ 54 (104)
+..+.+++.++ +-|=++||| |.++|...++.| +.-|+.....
T Consensus 171 edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~ag-a~RiGtSs~v 215 (228)
T COG0274 171 EDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAG-ATRIGTSSGV 215 (228)
T ss_pred HHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHh-HHHhccccHH
Confidence 34566777776 357889999 999999999998 5666665443
No 495
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=23.98 E-value=1e+02 Score=19.32 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=24.1
Q ss_pred HHHHHHcCCCcEEecchHHhhCCcHHHHHhh-CC
Q 046574 36 GNKAIAEGRADLVVYGRFFLANPDLPRRFEF-NA 68 (104)
Q Consensus 36 ae~~l~~g~~DlVa~gR~~lanPdl~~ri~~-g~ 68 (104)
.+++++....|+|.++-+--.+.+++.++.+ |.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~ 87 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGK 87 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTS
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCC
Confidence 5566766678888888888888888777654 44
No 496
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=23.90 E-value=1e+02 Score=24.57 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=23.9
Q ss_pred eEEEeCCC-CHHHHHHHHHcCCCcEEecc
Q 046574 24 TFLVAGGY-DREDGNKAIAEGRADLVVYG 51 (104)
Q Consensus 24 pvi~~Ggi-~~~~ae~~l~~g~~DlVa~g 51 (104)
.++.+|.+ +++.+++++....+++|-++
T Consensus 86 l~~Gtg~y~s~~~~~~a~~asg~e~vTva 114 (326)
T PRK11840 86 LLVGTGKYKDFEETAAAVEASGAEIVTVA 114 (326)
T ss_pred eeEecCCCCCHHHHHHHHHHhCCCEEEEE
Confidence 57888999 99999999998779987554
No 497
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.54 E-value=1.9e+02 Score=22.43 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCeEEEeCCC-CHHHHHHHHHcCCCcEEec
Q 046574 13 SLLLMRKAFKGTFLVAGGY-DREDGNKAIAEGRADLVVY 50 (104)
Q Consensus 13 ~~~~ir~~~~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa~ 50 (104)
....+++...+||++.=.+ ++++...++..+.+|+|-+
T Consensus 218 ~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~ 256 (352)
T cd03325 218 ALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQP 256 (352)
T ss_pred HHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEec
Confidence 4456777777786665444 8888888888877887644
No 498
>PRK10693 response regulator of RpoS; Provisional
Probab=23.53 E-value=2.1e+02 Score=21.63 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=27.8
Q ss_pred hHHHHHHHHc-CCeEEEeCCC-CHHHHHHHHHcCCCcEEe
Q 046574 12 HSLLLMRKAF-KGTFLVAGGY-DREDGNKAIAEGRADLVV 49 (104)
Q Consensus 12 ~~~~~ir~~~-~~pvi~~Ggi-~~~~ae~~l~~g~~DlVa 49 (104)
+..+.+++.. ..|+|...+. +.+.+.++++.|..|++.
T Consensus 34 e~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~ 73 (303)
T PRK10693 34 EFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLL 73 (303)
T ss_pred HHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEE
Confidence 4556666653 3587777777 888888999999877764
No 499
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=23.50 E-value=2.1e+02 Score=24.56 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=32.6
Q ss_pred hHHHHHHHHcCCeEEEeCCC---------CHHHHHHHHHcCCCcEEecch
Q 046574 12 HSLLLMRKAFKGTFLVAGGY---------DREDGNKAIAEGRADLVVYGR 52 (104)
Q Consensus 12 ~~~~~ir~~~~~pvi~~Ggi---------~~~~ae~~l~~g~~DlVa~gR 52 (104)
..++.+++.++.||++|-++ ||++|-.......+|.+.++.
T Consensus 499 ~ll~aF~~~TG~gvllNTSFN~~GEPIVcsp~DA~~~f~~t~~d~Lvi~~ 548 (555)
T COG2192 499 GLLRAFKERTGVGVLLNTSFNVHGEPIVCSPADAIRTFLSTGLDALVLED 548 (555)
T ss_pred HHHHHHHHhcCCcEEEecccccCCCceecCHHHHHHHHHhCCCcEEEEcC
Confidence 35677888888899999874 588887777777799988875
No 500
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=23.34 E-value=22 Score=26.66 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=19.3
Q ss_pred EEecchHHhhCCcHHHHHhhCCCCCCCCcc
Q 046574 47 LVVYGRFFLANPDLPRRFEFNAPLNKYNRE 76 (104)
Q Consensus 47 lVa~gR~~lanPdl~~ri~~g~~l~~~d~~ 76 (104)
=|++||+++.+|++ +..+.|.-+.|..
T Consensus 150 RVAIARAL~~~P~i---ilADEPTgnLD~~ 176 (226)
T COG1136 150 RVAIARALINNPKI---ILADEPTGNLDSK 176 (226)
T ss_pred HHHHHHHHhcCCCe---EEeeCccccCChH
Confidence 48899999999987 4556665444443
Done!