BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046575
         (411 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q60258|Y3534_METJA Uncharacterized protein MJECL34 OS=Methanocaldococcus jannaschii
           (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
           100440) GN=MJECL34 PE=4 SV=1
          Length = 295

 Score = 34.3 bits (77), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 24/153 (15%)

Query: 177 PGFTQESLNSSVFYNRRIP------------SKPAEWGKASMIDAE--RRLLANALLDFS 222
           PG T++ L   V+Y+ R P            SK  E     +IDA   +R+L     D +
Sbjct: 6   PGLTEKKL--YVYYDERYPYSWIPHNVAKHISKELEKYDFEVIDAPSLQRVLGEGSKDTN 63

Query: 223 NERFVLLSETCIPLFNFTTVYNYLINS---RHSNQGSI-----DDPRPMGRGRYNKRMLP 274
            E  V+ ++  +P        N   NS   R  N G I     D P+ +GR   N+++ P
Sbjct: 64  KEYVVVFAQDVVPDLVLDNPDNPTSNSLLRRFLNAGQIIVWMGDSPQYVGRADDNQKLNP 123

Query: 275 SVSLSDWRKGSQWFEVHRKVAVEIISDVTYYPV 307
            V  +       +   ++++++ I   V   P+
Sbjct: 124 PVMQNVLSMNPNYITTNKRISLTISGIVLSLPL 156


>sp|P33222|YJFC_ECOLI Uncharacterized protein YjfC OS=Escherichia coli (strain K12)
           GN=yjfC PE=4 SV=2
          Length = 387

 Score = 33.9 bits (76), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 148 RGILPLAPLWEKFFKGYEGLYSIYLHSSKPGFTQ-ESLNSSVFYNRRIPSKPAEWGKASM 206
           +G++PL  LW +FF G+  L + +    KP     ES      Y+R       E G  ++
Sbjct: 265 KGLMPL--LW-RFFPGHPNLLASWFDGEKPQIAAGESYVRKPIYSR-------EGGNVTI 314

Query: 207 IDAERRLLANALLDFSNERFVLLSETCIPLF--NFTTVYNYLINSRHSNQGSIDD 259
            D +  ++ +A  D+++E  +  +   +P F  ++T + +++++      G  +D
Sbjct: 315 FDGKNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIRED 369


>sp|P18294|KCRF_STRPU Creatine kinase, flagellar OS=Strongylocentrotus purpuratus PE=1
           SV=1
          Length = 1174

 Score = 32.3 bits (72), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 6/45 (13%)

Query: 78  SYFLFNSSSPLPLSRFQNGCRNLRDWISPPNKGVWHSMNDDELMW 122
            +FLF+     P+S      R  RDW  P  +G+WH+ N + L+W
Sbjct: 604 DHFLFDK----PVSPLLTAARMHRDW--PQGRGIWHNENKNFLVW 642


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,179,340
Number of Sequences: 539616
Number of extensions: 6564755
Number of successful extensions: 15124
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15122
Number of HSP's gapped (non-prelim): 5
length of query: 411
length of database: 191,569,459
effective HSP length: 120
effective length of query: 291
effective length of database: 126,815,539
effective search space: 36903321849
effective search space used: 36903321849
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)