Query 046575
Match_columns 411
No_of_seqs 249 out of 748
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 13:32:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 2.9E-44 6.3E-49 368.3 20.5 246 137-405 76-362 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 1.1E-45 2.3E-50 352.4 9.1 225 141-369 1-244 (244)
3 KOG0799 Branching enzyme [Carb 99.9 9.8E-26 2.1E-30 233.9 13.4 214 141-359 105-349 (439)
4 PHA03093 EEV glycoprotein; Pro 41.7 39 0.00084 31.9 4.3 32 30-65 42-73 (185)
5 TIGR01310 L7 60S ribosomal pro 39.0 1.6E+02 0.0034 28.9 8.2 100 133-250 66-168 (235)
6 PF06365 CD34_antigen: CD34/Po 23.4 2.4E+02 0.0052 27.1 6.3 56 18-74 92-157 (202)
7 KOG0071 GTP-binding ADP-ribosy 20.1 3.7E+02 0.008 24.9 6.5 73 148-248 69-145 (180)
8 PF01102 Glycophorin_A: Glycop 19.2 66 0.0014 28.4 1.5 30 27-56 65-94 (122)
9 TIGR03469 HonB hopene-associat 18.8 9.9E+02 0.021 24.3 11.0 117 135-254 36-166 (384)
10 PRK01741 cell division protein 17.4 2.1E+02 0.0046 29.5 4.9 37 29-65 3-41 (332)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=368.31 Aligned_cols=246 Identities=17% Similarity=0.161 Sum_probs=185.6
Q ss_pred CCCcEEEEEEec-CC-CCchHHHHHHHccCCCceEEEEecCCCCCcccc-----------cccceeeeeee-CC-CCccc
Q 046575 137 RKPKVAFMFLIR-GI-LPLAPLWEKFFKGYEGLYSIYLHSSKPGFTQES-----------LNSSVFYNRRI-PS-KPAEW 201 (411)
Q Consensus 137 ~~pKIAFLfLa~-g~-l~L~~Lwe~ff~g~~~~ysIyVH~sdp~~~~~~-----------~~~svf~~r~I-ps-~~V~W 201 (411)
.+|||||||+++ |+ .++++|++++++++ + .+|||+ |++..... +.-.++.|.++ .+ ..|.|
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aLYhpr-N--~y~IHl-DkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~W 151 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRALYHPR-N--QYVVHL-DLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTY 151 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHhcCCC-c--eEEEEe-cCCCChHHHHHHHHHhhccchhhccCcEEEEecceeecc
Confidence 579999999995 66 68999999999754 3 459999 76544211 11133445443 43 56999
Q ss_pred CCccHHHHHHHHHHHHHhC-CCCCEEEEecCCccccCChHH-HHHHHhcC-CCCceeccCCCCCCcccccccc-------
Q 046575 202 GKASMIDAERRLLANALLD-FSNERFVLLSETCIPLFNFTT-VYNYLINS-RHSNQGSIDDPRPMGRGRYNKR------- 271 (411)
Q Consensus 202 G~~SlVeAelrLL~~AL~d-~~ndyFvLLSgsdiPL~s~~~-I~~~L~~~-~~sFIe~~~~p~~~~r~RY~~~------- 271 (411)
||+|||+||+++|+.+|+. .+|+|||||||+||||+++++ |+.|+..+ +++||++....+.....|+.+.
T Consensus 152 GG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~ 231 (421)
T PLN03183 152 RGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLY 231 (421)
T ss_pred CChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCcee
Confidence 9999999999999999984 689999999999999999999 56676654 7899997654322222222110
Q ss_pred ------c---CC--CcC-ccccccccceeeehHHHHHHHHhcccch-hHHhhccCCCCCCchhHHHHHhhcCC-C-CCCC
Q 046575 272 ------M---LP--SVS-LSDWRKGSQWFEVHRKVAVEIISDVTYY-PVLRDHCRPPCYMDEHYFATLVSKIC-P-ELNS 336 (411)
Q Consensus 272 ------m---~P--~i~-~~~~rkGSQWfsLtR~~A~~Il~d~~~~-~~F~~~cr~t~~pDEhyf~TlL~n~~-~-~~i~ 336 (411)
. .+ ..+ ..++++|||||+|||++|+||+...+.. ...+.|.+.+++|||+||||+++|++ + ++++
T Consensus 232 ~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~v 311 (421)
T PLN03183 232 STNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAV 311 (421)
T ss_pred ecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhccccccccc
Confidence 0 00 111 2368899999999999999999743322 33555666788999999999999997 5 6788
Q ss_pred CCceeEEeCCCCC-CCCcccccCCCCHHHHHHHHccCccccCCCCCCCCceeeecCCCCCchhHHHhchh
Q 046575 337 NRSITWVDWSRGG-SHPATFVRKDVSEKFLNRIRHGFNCSYNGFRTTMCFLFARKFHPNTLEPLLRIAPA 405 (411)
Q Consensus 337 n~~lryIDWs~gg-~hP~~~~~~Dvt~e~l~~lr~~~~C~yng~~~~~~~LFARKF~~~~~~~LL~l~~~ 405 (411)
|+++|||||.+++ .||++|+.+| +++|.+ ++++|||||+. ++++|+.+++
T Consensus 312 n~nLRyI~W~~~~~~~P~~l~~~D-----~~~l~~------------S~~lFARKFd~--d~~vl~~Id~ 362 (421)
T PLN03183 312 NHDLHYISWDNPPKQHPHTLSLND-----TEKMIA------------SGAAFARKFRR--DDPVLDKIDK 362 (421)
T ss_pred CCceeEEecCCCCCCCCcccCHHH-----HHHHHh------------CCCccccCCCC--ChHHHHHHHH
Confidence 9999999999764 4999999999 588876 68899999996 5678887765
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1.1e-45 Score=352.40 Aligned_cols=225 Identities=29% Similarity=0.457 Sum_probs=145.4
Q ss_pred EEEEEEe-cCCC-CchHHHHHHHccCCCceEEEEecCCCCCccc----ccc-cceee-eeeeC-CCCcccCCccHHHHHH
Q 046575 141 VAFMFLI-RGIL-PLAPLWEKFFKGYEGLYSIYLHSSKPGFTQE----SLN-SSVFY-NRRIP-SKPAEWGKASMIDAER 211 (411)
Q Consensus 141 IAFLfLa-~g~l-~L~~Lwe~ff~g~~~~ysIyVH~sdp~~~~~----~~~-~svf~-~r~Ip-s~~V~WG~~SlVeAel 211 (411)
|||||+| +++. ++++|.+.+. .+++.| |||+ |++.... +.. ...+. .++++ +.+|.||++|||+|++
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~-~~~~~f--~iHi-D~k~~~~~~~~~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l 76 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY-HPDNDF--YIHI-DKKSPDYFYEEIKKLISCFPNVHFVPKRVDVRWGGFSLVEATL 76 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH---TTSEE--EEEE--TTS-HHHHHHHHHHHCT-TTEEE-SS-----TTSHHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc-CCCCEE--EEEE-cCCCChHHHHHHHHhcccCCceeecccccccccCCccHHHHHH
Confidence 7999999 5355 5666666665 445665 5666 4432211 111 12232 34677 7899999999999999
Q ss_pred HHHHHHHh-CCCCCEEEEecCCccccCChHHHHHHHhcC--CCCceeccCCCCCCcccccccc----cCCCcCccccccc
Q 046575 212 RLLANALL-DFSNERFVLLSETCIPLFNFTTVYNYLINS--RHSNQGSIDDPRPMGRGRYNKR----MLPSVSLSDWRKG 284 (411)
Q Consensus 212 rLL~~AL~-d~~ndyFvLLSgsdiPL~s~~~I~~~L~~~--~~sFIe~~~~p~~~~r~RY~~~----m~P~i~~~~~rkG 284 (411)
+||++|++ +++|+|||||||+|+||+++++|+++|+.+ +.+|+++...++....+||... +.+.+...++++|
T Consensus 77 ~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~G 156 (244)
T PF02485_consen 77 NLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLYKG 156 (244)
T ss_dssp HHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--EEE
T ss_pred HHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccccc
Confidence 99999999 789999999999999999999999999987 5788998887655444666553 3344444589999
Q ss_pred cceeeehHHHHHHHHhcccchhHHhhccCCCCCCchhHHHHHhhcCC-C-CCCCCCceeEEeCC-CCCCCCcccccCCCC
Q 046575 285 SQWFEVHRKVAVEIISDVTYYPVLRDHCRPPCYMDEHYFATLVSKIC-P-ELNSNRSITWVDWS-RGGSHPATFVRKDVS 361 (411)
Q Consensus 285 SQWfsLtR~~A~~Il~d~~~~~~F~~~cr~t~~pDEhyf~TlL~n~~-~-~~i~n~~lryIDWs-~gg~hP~~~~~~Dvt 361 (411)
||||+|||++|++|++|....+.++.+|+.+++|||+||||+|+|++ + ..+.|+++|||||+ ++++||++++..|++
T Consensus 157 SqW~~Ltr~~v~~il~~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~~~~~~~ 236 (244)
T PF02485_consen 157 SQWFSLTRDFVEYILDDPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTLTICDLG 236 (244)
T ss_dssp -S--EEEHHHHHHHHH-HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SSEEEE--
T ss_pred ceeeEeeHHHHHHhhhhHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCeeeeeeeC
Confidence 99999999999999988888889999999999999999999999983 3 67889999999999 889999999999999
Q ss_pred HHHHHHHH
Q 046575 362 EKFLNRIR 369 (411)
Q Consensus 362 ~e~l~~lr 369 (411)
.+.|+.|+
T Consensus 237 ~~d~~~~~ 244 (244)
T PF02485_consen 237 PEDLPWLK 244 (244)
T ss_dssp GGGHHHH-
T ss_pred HHHHHhhC
Confidence 88888763
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.93 E-value=9.8e-26 Score=233.87 Aligned_cols=214 Identities=17% Similarity=0.180 Sum_probs=160.2
Q ss_pred EEEEEEecCC-CCchHHHHHHHccCCCceEEEEecCCCCCccc----c-cccceeeeeeeCC--CCcccCCccHHHHHHH
Q 046575 141 VAFMFLIRGI-LPLAPLWEKFFKGYEGLYSIYLHSSKPGFTQE----S-LNSSVFYNRRIPS--KPAEWGKASMIDAERR 212 (411)
Q Consensus 141 IAFLfLa~g~-l~L~~Lwe~ff~g~~~~ysIyVH~sdp~~~~~----~-~~~svf~~r~Ips--~~V~WG~~SlVeAelr 212 (411)
+||+.++++. .++++++.+.+++ +|.|+ ||+ |.+.... + +..++|.|.+|.+ ..|.|||.|++.|.++
T Consensus 105 ~a~~~~v~kd~~~verll~aiYhP-qN~yc--ihv-D~~s~~~fk~~~~~L~~cf~NV~v~~k~~~v~~~G~s~l~a~l~ 180 (439)
T KOG0799|consen 105 AAFLRVVYKDYEQVERLLQAIYHP-QNVYC--IHV-DAKSPPEFRVAMQQLASCFPNVIVLPKRESVTYGGHSILAAHLN 180 (439)
T ss_pred eEEEEeecccHHHHHHHHHHHhCC-cCcce--EEE-CCCCCHHHHHHHHHHHhcCCceEEeccccceecCCchhhHHHHH
Confidence 5555555555 4789999988875 47774 666 4433322 2 3578999877664 5899999999999999
Q ss_pred HHHHHHhC-CCCCEEEEecCCccccCChHHHHHHHhc-CCCCceeccCCCCCCccccccc-----ccC--------CCcC
Q 046575 213 LLANALLD-FSNERFVLLSETCIPLFNFTTVYNYLIN-SRHSNQGSIDDPRPMGRGRYNK-----RML--------PSVS 277 (411)
Q Consensus 213 LL~~AL~d-~~ndyFvLLSgsdiPL~s~~~I~~~L~~-~~~sFIe~~~~p~~~~r~RY~~-----~m~--------P~i~ 277 (411)
||+.+++. .+|+||++|||+|+||+++.++.+.|.. ++.+||+....++.....+-.+ +++ +.++
T Consensus 181 c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~~lp 260 (439)
T KOG0799|consen 181 CLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWVILP 260 (439)
T ss_pred HHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccccCC
Confidence 99999996 4699999999999999999999999987 7999999765543211111110 011 0111
Q ss_pred -ccccccccceeeehHHHHHHHHhcccchhHHhhccCCCCCCchhHHHHHhhcCCCCCCCCCc--eeEEeCCC-----CC
Q 046575 278 -LSDWRKGSQWFEVHRKVAVEIISDVTYYPVLRDHCRPPCYMDEHYFATLVSKICPELNSNRS--ITWVDWSR-----GG 349 (411)
Q Consensus 278 -~~~~rkGSQWfsLtR~~A~~Il~d~~~~~~F~~~cr~t~~pDEhyf~TlL~n~~~~~i~n~~--lryIDWs~-----gg 349 (411)
...+++||.|++|+|.+|+|++.+ .....+.++.+++..|||+||+|+++|.......+.+ +|++.|.. .+
T Consensus 261 ~~~ki~~Gs~~~~LsR~fv~y~i~~-~~~~~ll~~~~~t~~~dE~f~~Tl~~n~~~~~g~~~~~~lr~~~W~~~~~~~~~ 339 (439)
T KOG0799|consen 261 TALKLFKGSAWVSLSRAFVEYLISG-NLPRTLLMYYNNTYSPDEGFFHTLQCNPFGMPGVFNDECLRYTNWDRKDVDPPK 339 (439)
T ss_pred CceEEEecceeEEEeHHHHHHHhcC-ccHHHHHHHHhCccCcchhhhHhhhccccCCCCcccchhhcceecccccccccc
Confidence 224789999999999999999988 4467788888899999999999999999223445555 99999986 24
Q ss_pred CCCcccccCC
Q 046575 350 SHPATFVRKD 359 (411)
Q Consensus 350 ~hP~~~~~~D 359 (411)
.||+.++..|
T Consensus 340 ~~c~~~~~~~ 349 (439)
T KOG0799|consen 340 QHCHSLTVRD 349 (439)
T ss_pred cCCccccccc
Confidence 4777777766
No 4
>PHA03093 EEV glycoprotein; Provisional
Probab=41.68 E-value=39 Score=31.88 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=23.6
Q ss_pred ehhHHhhhhhHHHHHHHHHHHHHHhhhcccceeeec
Q 046575 30 TTIILLLSMASFVVLLSMFVRERVRKFLVSEEIYFT 65 (411)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (411)
..||-++|++++|++|++-+++ |..-.|--.+
T Consensus 42 siiiSIlsL~~i~~~LAlqln~----Ck~~~e~~~~ 73 (185)
T PHA03093 42 SIIISILSLIAITATLALQLNK----CKSANESAIT 73 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhhhcccc
Confidence 4677788999999999998887 5544444444
No 5
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
Probab=39.03 E-value=1.6e+02 Score=28.95 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=61.1
Q ss_pred CCCCCCCcEEEEEEecCCCCchHHHHHHHcc---CCCceEEEEecCCCCCcccccccceeeeeeeCCCCcccCCccHHHH
Q 046575 133 YPYNRKPKVAFMFLIRGILPLAPLWEKFFKG---YEGLYSIYLHSSKPGFTQESLNSSVFYNRRIPSKPAEWGKASMIDA 209 (411)
Q Consensus 133 ~p~~~~pKIAFLfLa~g~l~L~~Lwe~ff~g---~~~~ysIyVH~sdp~~~~~~~~~svf~~r~Ips~~V~WG~~SlVeA 209 (411)
.+.+..+|++|+|=.+|...+.+-.+..++- ++-...++|-. .+++..-+. +-.--|.||..|+-
T Consensus 66 ~~~~~e~kl~fVIRirG~~~v~p~v~k~L~lLRL~~in~~Vfvk~-~~~~~~ML~---------~VepYVt~G~p~l~-- 133 (235)
T TIGR01310 66 FYVPAEHKLLFVIRIKGINGIPPKPRKVLRLLRLKQVHNGVFVKV-NKATLQMLR---------IVEPYVAYGYPNLK-- 133 (235)
T ss_pred cCCCCCCeEEEEEEeCCCCCCCHHHHHHHHHhCCCccceEEEEEC-CHHHHHHHH---------hcCCeEEEecCCHH--
Confidence 4456788999999998876555656555441 33344666766 432211001 11235899999953
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCccccCChHHHHHHHhcCC
Q 046575 210 ERRLLANALLDFSNERFVLLSETCIPLFNFTTVYNYLINSR 250 (411)
Q Consensus 210 elrLL~~AL~d~~ndyFvLLSgsdiPL~s~~~I~~~L~~~~ 250 (411)
.+++++.... +.-+.|+-+||-++.-+.+.|-..+
T Consensus 134 ---tvr~Li~KRG---~~k~~~~~v~Ltdn~iiE~~lg~~g 168 (235)
T TIGR01310 134 ---SVRELIYKRG---FAKINGQRVPLTDNTIIEQHLGKYG 168 (235)
T ss_pred ---HHHHHHHHhC---ceeeCCCeeeCChhHHHHHhhccCC
Confidence 4444444322 4567888899999988888875444
No 6
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=23.36 E-value=2.4e+02 Score=27.11 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=29.2
Q ss_pred ccccccceeEEeehhHHhh--hhhHHHHHHHHHHHHHHhh----hcccceeeec--c--CCCCCCCC
Q 046575 18 KREVGKGSFHVTTTIILLL--SMASFVVLLSMFVRERVRK----FLVSEEIYFT--S--QLPKLSPL 74 (411)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~--~~~~~~~~ 74 (411)
.++.+.+|- ++.++|... -+++++++..+|+.+|-.. --.-+|.+|. . .+|.+|+-
T Consensus 92 ~~~~~~r~~-~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~~~rl~Ee~~~vEng~h~n~~l~v~ 157 (202)
T PF06365_consen 92 HQSSSDRYP-TLIALVTSGSFLLLAILLGAGYCCHQRRSWSKKGQRLGEELYTVENGYHDNPTLSVA 157 (202)
T ss_pred CCCcCccce-EEEehHHhhHHHHHHHHHHHHHHhhhhccCCcchhhhccCceecccCccCCcccccC
Confidence 556666633 444444444 2234444445588887653 2345666663 2 35656554
No 7
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.14 E-value=3.7e+02 Score=24.91 Aligned_cols=73 Identities=21% Similarity=0.381 Sum_probs=51.0
Q ss_pred cCCCCchHHHHHHHccCCCceEEEEecCCCCCcccccccceeeeeeeCCCCcccCCccHHHHHHHHHHHHHhCC---CCC
Q 046575 148 RGILPLAPLWEKFFKGYEGLYSIYLHSSKPGFTQESLNSSVFYNRRIPSKPAEWGKASMIDAERRLLANALLDF---SNE 224 (411)
Q Consensus 148 ~g~l~L~~Lwe~ff~g~~~~ysIyVH~sdp~~~~~~~~~svf~~r~Ips~~V~WG~~SlVeAelrLL~~AL~d~---~nd 224 (411)
-|...+.+||+++|.|.+++ |||-- ..+. ..+++.++=|..++.+. +.-
T Consensus 69 GGqd~iRplWrhYy~gtqgl--IFV~D-sa~~-------------------------dr~eeAr~ELh~ii~~~em~~~~ 120 (180)
T KOG0071|consen 69 GGQDKIRPLWRHYYTGTQGL--IFVVD-SADR-------------------------DRIEEARNELHRIINDREMRDAI 120 (180)
T ss_pred cCchhhhHHHHhhccCCceE--EEEEe-ccch-------------------------hhHHHHHHHHHHHhCCHhhhcce
Confidence 35566999999999998775 55532 1100 13567777777778774 234
Q ss_pred EEEEecCCccc-cCChHHHHHHHhc
Q 046575 225 RFVLLSETCIP-LFNFTTVYNYLIN 248 (411)
Q Consensus 225 yFvLLSgsdiP-L~s~~~I~~~L~~ 248 (411)
..|+---||.| -.+..+|.+||.-
T Consensus 121 ~LvlANkQDlp~A~~pqei~d~leL 145 (180)
T KOG0071|consen 121 ILILANKQDLPDAMKPQEIQDKLEL 145 (180)
T ss_pred EEEEecCcccccccCHHHHHHHhcc
Confidence 56666789999 6889999999864
No 8
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=19.18 E-value=66 Score=28.42 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=15.6
Q ss_pred EEeehhHHhhhhhHHHHHHHHHHHHHHhhh
Q 046575 27 HVTTTIILLLSMASFVVLLSMFVRERVRKF 56 (411)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (411)
++++.|+-...++..++||..|+-.|++|-
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444445555555566666666666553
No 9
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=18.83 E-value=9.9e+02 Score=24.31 Aligned_cols=117 Identities=9% Similarity=-0.018 Sum_probs=58.6
Q ss_pred CCCCCcEEEEEEecCCC-CchHHHHHHHccCC-CceEEEEecCCCCCcccccc----ccee----eeeeeCC--CCcccC
Q 046575 135 YNRKPKVAFMFLIRGIL-PLAPLWEKFFKGYE-GLYSIYLHSSKPGFTQESLN----SSVF----YNRRIPS--KPAEWG 202 (411)
Q Consensus 135 ~~~~pKIAFLfLa~g~l-~L~~Lwe~ff~g~~-~~ysIyVH~sdp~~~~~~~~----~svf----~~r~Ips--~~V~WG 202 (411)
.+..|+++.++-++|.. .+.+.++.+.+... +.+.|.|=- |.+....... ..-. .-+.+.. .+..|+
T Consensus 36 ~~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVD-d~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~ 114 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVD-DHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWS 114 (384)
T ss_pred CCCCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEe-CCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCc
Confidence 34568899999996655 58889888876322 235655432 4332211100 0000 1122332 234565
Q ss_pred CccHHHHHHHHHHHHHhC-CCCCEEEEecCCccccCCh-HHHHHHHhcCCCCce
Q 046575 203 KASMIDAERRLLANALLD-FSNERFVLLSETCIPLFNF-TTVYNYLINSRHSNQ 254 (411)
Q Consensus 203 ~~SlVeAelrLL~~AL~d-~~ndyFvLLSgsdiPL~s~-~~I~~~L~~~~~sFI 254 (411)
| ...|--..++.|-.. .+.|+++++-..+.+-.+. ..+.+.+..++...+
T Consensus 115 G--k~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 115 G--KLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred c--hHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 4 345555666666533 2357776666666542221 334444444454444
No 10
>PRK01741 cell division protein ZipA; Provisional
Probab=17.40 E-value=2.1e+02 Score=29.47 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=31.5
Q ss_pred eehhHHhhhhhHHHHHHHH--HHHHHHhhhcccceeeec
Q 046575 29 TTTIILLLSMASFVVLLSM--FVRERVRKFLVSEEIYFT 65 (411)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 65 (411)
|-||.++|+++++|+|.++ +-+.|+..-.|+-...|+
T Consensus 3 Ln~iliILg~lal~~Lv~hgiWsnRrEKSqyF~n~~tf~ 41 (332)
T PRK01741 3 LNTILIILGILALVALVAHGIWSNRREKSQYFSNANTFT 41 (332)
T ss_pred ceehHHHHHHHHHHHHHHhhhhhhhhHHHHhhhcccccc
Confidence 3578888999999988865 668999999999999996
Done!