Query 046575
Match_columns 411
No_of_seqs 249 out of 748
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 23:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 8.5E-52 2.9E-56 421.3 15.3 270 114-407 50-381 (391)
2 2ks1_B Epidermal growth factor 13.1 76 0.0026 22.1 1.3 26 28-53 13-39 (44)
3 4a17_V RPL7, 60S ribosomal pro 10.2 3.4E+02 0.012 25.4 5.2 98 135-250 74-174 (239)
4 3ckj_A Putative uncharacterize 9.8 5.9E+02 0.02 23.6 7.0 110 137-254 46-166 (329)
5 3iz6_N 40S ribosomal protein S 7.9 3.5E+02 0.012 19.6 3.4 44 350-409 9-52 (56)
6 3j20_P 30S ribosomal protein S 7.1 5.7E+02 0.02 18.5 4.2 45 349-409 8-52 (56)
7 1iio_A Conserved hypothetical 6.9 1.1E+02 0.0038 24.2 0.3 21 228-248 60-80 (84)
8 3lqv_P Splicing factor 3B subu 6.5 1.8E+02 0.0063 19.8 1.2 9 113-121 21-29 (39)
9 3dl8_C SECE; RECA-type ATPase 6.4 2.2E+02 0.0076 20.9 1.7 36 5-40 3-41 (65)
10 2el8_A Signal-transducing adap 6.4 3E+02 0.01 22.2 2.7 37 193-232 17-53 (118)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=8.5e-52 Score=421.35 Aligned_cols=270 Identities=15% Similarity=0.153 Sum_probs=211.8
Q ss_pred CCChHHHHHHhhcccCcc---CC---CC---CCCCcEEEEEEecCCC-CchHHHHHHHccCCCceEEEEecCCCCCccc-
Q 046575 114 SMNDDELMWRASMVPKIE---EY---PY---NRKPKVAFMFLIRGIL-PLAPLWEKFFKGYEGLYSIYLHSSKPGFTQE- 182 (411)
Q Consensus 114 ~~~d~el~~~as~~~~~~---~~---p~---~~~pKIAFLfLa~g~l-~L~~Lwe~ff~g~~~~ysIyVH~sdp~~~~~- 182 (411)
.++|++++.....|+... .+ |. +..+||||||+++++. ++++|++.++ +..+.+|||+ |++....
T Consensus 50 ~~~~~~~~~~~~~C~~~~~~~~~~~~pl~~~e~~~kiAflil~h~d~~~l~rll~~ly---~p~n~y~IHv-D~ks~~~~ 125 (391)
T 2gak_A 50 RWTPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHKIEMLDRLLRAIY---MPQNFYCIHV-DRKAEESF 125 (391)
T ss_dssp CCCHHHHHHHTTSHHHHHHHHTCCCSCSCHHHHTSCEEEEEEECSCHHHHHHHHHHHC---CTTSEEEEEE-CTTSCHHH
T ss_pred ccCcchhccccCCchhhhhcccccCCCCCccccCCCEEEEEEecCCHHHHHHHHHHHh---CCCCeEEEEE-eCCCCHHH
Confidence 678999988876777632 22 32 2368999999997764 3444444443 2445679999 7664322
Q ss_pred ---cc-ccceeeeeeeC--CCCcccCCccHHHHHHHHHHHHHhC-CCCCEEEEecCCccccCChHHHHHHHhc-CCCCce
Q 046575 183 ---SL-NSSVFYNRRIP--SKPAEWGKASMIDAERRLLANALLD-FSNERFVLLSETCIPLFNFTTVYNYLIN-SRHSNQ 254 (411)
Q Consensus 183 ---~~-~~svf~~r~Ip--s~~V~WG~~SlVeAelrLL~~AL~d-~~ndyFvLLSgsdiPL~s~~~I~~~L~~-~~~sFI 254 (411)
++ ..++|.|++|. +..|.|||+|||+||++||++||++ .+|+|||||||+|+||+++++|++||+. +++|||
T Consensus 126 ~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFI 205 (391)
T 2gak_A 126 LAAVQGIASCFDNVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNL 205 (391)
T ss_dssp HHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBC
T ss_pred HHHHHHHHhcCCCEEEeccCcccccCCchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCcee
Confidence 22 35668888874 6899999999999999999999986 4999999999999999999999999997 689999
Q ss_pred eccCCCCC-Cccccccc--------------ccCCCcCccccccccceeeehHHHHHHHHhcccchhHHhhccCCCCCCc
Q 046575 255 GSIDDPRP-MGRGRYNK--------------RMLPSVSLSDWRKGSQWFEVHRKVAVEIISDVTYYPVLRDHCRPPCYMD 319 (411)
Q Consensus 255 e~~~~p~~-~~r~RY~~--------------~m~P~i~~~~~rkGSQWfsLtR~~A~~Il~d~~~~~~F~~~cr~t~~pD 319 (411)
++..+++. ..|.+|.+ ++.|. ..+|++|||||+|||++|++|++|.. .++|.+||+++|+||
T Consensus 206 e~~~~~~~~~~R~~~~~~~~~~~l~~~~~~k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k~t~~pD 282 (391)
T 2gak_A 206 ETEKMPPNKEERWKKRYAVVDGKLTNTGIVKAPPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQDTYSPD 282 (391)
T ss_dssp CBEECCGGGSHHHHEEEEEETTEEEEEEEECCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHTTSSSGG
T ss_pred eccCCCcccccceEeeeeccccceeeecccccCCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHcCCcCCc
Confidence 99987643 22323321 12332 34799999999999999999999854 788999999999999
Q ss_pred hhHHHHHhhcCCC-CC----------CCCCceeEEeCC-------CCCCCCc----------ccccCCCCHHHHHHHHcc
Q 046575 320 EHYFATLVSKICP-EL----------NSNRSITWVDWS-------RGGSHPA----------TFVRKDVSEKFLNRIRHG 371 (411)
Q Consensus 320 Ehyf~TlL~n~~~-~~----------i~n~~lryIDWs-------~gg~hP~----------~~~~~Dvt~e~l~~lr~~ 371 (411)
||||||++.+.+. +. .+|+++|||+|+ +|++||. +|+.+| ++.|++
T Consensus 283 E~ffqTll~~~~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~D-----l~~l~~- 356 (391)
T 2gak_A 283 EFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGD-----LSWMLR- 356 (391)
T ss_dssp GTHHHHHTTSTTSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGG-----HHHHTT-
T ss_pred hhHHHHHhhccCCCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHH-----HHHHHh-
Confidence 9999999998653 22 247899999997 3556887 788888 688876
Q ss_pred CccccCCCCCCCCceeeecCCCCCchhHHHhchhhc
Q 046575 372 FNCSYNGFRTTMCFLFARKFHPNTLEPLLRIAPALL 407 (411)
Q Consensus 372 ~~C~yng~~~~~~~LFARKF~~~~~~~LL~l~~~~~ 407 (411)
+++||||||++++++++++.+++.+
T Consensus 357 -----------s~~lFARKF~~~~d~~~l~~l~~~l 381 (391)
T 2gak_A 357 -----------QHHLFANKFDMDVDPFAIQCLDEHL 381 (391)
T ss_dssp -----------SCCSEEECCCTTTCHHHHHHHHHHH
T ss_pred -----------CCCceEEccCCccCHHHHHHHHHHH
Confidence 6999999999999999999988754
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=13.09 E-value=76 Score=22.11 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=15.1
Q ss_pred EeehhHH-hhhhhHHHHHHHHHHHHHH
Q 046575 28 VTTTIIL-LLSMASFVVLLSMFVRERV 53 (411)
Q Consensus 28 ~~~~~~~-~~~~~~~~~~~~~~~~~~~ 53 (411)
|.++||- ++.++.++++..+|+|.|-
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 4455555 4445555566667777654
No 3
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=10.18 E-value=3.4e+02 Score=25.35 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=56.5
Q ss_pred CCCCCcEEEEEEecCCCCchHHHHHHHcc---CCCceEEEEecCCCCCcccccccceeeeeeeCCCCcccCCccHHHHHH
Q 046575 135 YNRKPKVAFMFLIRGILPLAPLWEKFFKG---YEGLYSIYLHSSKPGFTQESLNSSVFYNRRIPSKPAEWGKASMIDAER 211 (411)
Q Consensus 135 ~~~~pKIAFLfLa~g~l~L~~Lwe~ff~g---~~~~ysIyVH~sdp~~~~~~~~~svf~~r~Ips~~V~WG~~SlVeAel 211 (411)
....+|+||++.++|..-..+-..+-.+. .+-..++++-. .|+.. .+ - .+-..-|.||..++
T Consensus 74 ~~~e~kl~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~-npa~~-gM--L------r~V~pyV~~G~pnl----- 138 (239)
T 4a17_V 74 VPAEAKVAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRV-NKASL-NM--I------KRVLPFITFGYPTR----- 138 (239)
T ss_dssp ECCCCCEEEEEECSCSSSCCHHHHHHHHHTTCCBTTEEEEEEC-CHHHH-HT--T------GGGGGGEEEECCCH-----
T ss_pred CCCCceEEEEEEecccCCCCHHHHHHHHHcCCCccCCeEEEeC-CHHHH-HH--H------HHhhhceeeecCCH-----
Confidence 35679999999999887666666665542 11122333333 33211 00 0 01123589999984
Q ss_pred HHHHHHHhCCCCCEEEEecCCccccCChHHHHHHHhcCC
Q 046575 212 RLLANALLDFSNERFVLLSETCIPLFNFTTVYNYLINSR 250 (411)
Q Consensus 212 rLL~~AL~d~~ndyFvLLSgsdiPL~s~~~I~~~L~~~~ 250 (411)
..+++++..-. +..+.++.+||-++.-|.+.|-.-|
T Consensus 139 ksv~eLi~KRG---~~k~~~~~i~Ltdn~~ie~~lGk~g 174 (239)
T 4a17_V 139 NTISKLIYKRG---FAKVNGQRIPLTDNTIVEKSLGKFG 174 (239)
T ss_dssp HHHHHHHHHSC---EEEETTEEEECCCSHHHHHHHGGGT
T ss_pred HHHHHHHHhhC---ccccCCceecCChhHHHHHhCCcCC
Confidence 34455544211 4556677888888888888775433
No 4
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=9.78 E-value=5.9e+02 Score=23.55 Aligned_cols=110 Identities=9% Similarity=0.039 Sum_probs=55.2
Q ss_pred CCCcEEEEEEecCC-CCchHHHHHHHccC-CCceEEEEecCCCCCcccccc-----cceeee-eeeCCCCcccCCccHHH
Q 046575 137 RKPKVAFMFLIRGI-LPLAPLWEKFFKGY-EGLYSIYLHSSKPGFTQESLN-----SSVFYN-RRIPSKPAEWGKASMID 208 (411)
Q Consensus 137 ~~pKIAFLfLa~g~-l~L~~Lwe~ff~g~-~~~ysIyVH~sdp~~~~~~~~-----~svf~~-r~Ips~~V~WG~~SlVe 208 (411)
..|+|..+|-++|. ..+.+.++.+.... .+.+.|.| +||.+....... ..+... +.+..... -+ +...
T Consensus 46 ~~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiiv-VDdgS~D~t~~~~~~~~~~~~~~~~~~~~~~~-n~--G~~~ 121 (329)
T 3ckj_A 46 AGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIV-LDSGSTDDTEIRAVAAGARVVSREQALPEVPI-RP--GKGE 121 (329)
T ss_dssp TTCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEE-EECSCCSSHHHHHHHTTCEEEEHHHHCTTSCC-CC--SHHH
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEE-EeCCCCchHHHHHHHhhhhhccceeeeccCCC-CC--CHHH
Confidence 45789999999554 45888888887642 23366666 424332211110 111110 11111112 22 3445
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCccccCC--hHHHHHHHhc-CCCCce
Q 046575 209 AERRLLANALLDFSNERFVLLSETCIPLFN--FTTVYNYLIN-SRHSNQ 254 (411)
Q Consensus 209 AelrLL~~AL~d~~ndyFvLLSgsdiPL~s--~~~I~~~L~~-~~~sFI 254 (411)
|-...++.| ..+|++++-+.|+.+.+ ...+.+.+.+ .+...+
T Consensus 122 a~n~g~~~a----~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v 166 (329)
T 3ckj_A 122 ALWRSLAAS----RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLV 166 (329)
T ss_dssp HHHHHHHHC----CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEE
T ss_pred HHHHHHHhC----CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEE
Confidence 555555544 45777777777663322 3455666544 344444
No 5
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=7.86 E-value=3.5e+02 Score=19.63 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=31.9
Q ss_pred CCCcccccCCCCHHHHHHHHccCccccCCCCCCCCceeeecCCCCCchhHHHhchhhcCC
Q 046575 350 SHPATFVRKDVSEKFLNRIRHGFNCSYNGFRTTMCFLFARKFHPNTLEPLLRIAPALLGF 409 (411)
Q Consensus 350 ~hP~~~~~~Dvt~e~l~~lr~~~~C~yng~~~~~~~LFARKF~~~~~~~LL~l~~~~~~~ 409 (411)
.||+.|+..- ..|..-|.+ .+ .-|||.......-++....-+||
T Consensus 9 sh~r~~G~g~------------~rC~vcGr~--~g--~iRkfGL~~cR~cfRe~A~~iGF 52 (56)
T 3iz6_N 9 SHPKNYGAGS------------RVCRVCGNS--HG--LIRKYGLMCCRQCFRSDAKDIGF 52 (56)
T ss_dssp CCCCCCCCCC------------CCCSSCCCS--CC--CTTTTSCTTHHHHHHTTCCSTTC
T ss_pred CCccccCCCc------------ceeecCCCC--cc--cccccCCcHHHHHHHHHHHhcCc
Confidence 5899998764 467777765 23 46999998777777776666777
No 6
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=7.08 E-value=5.7e+02 Score=18.51 Aligned_cols=45 Identities=20% Similarity=0.148 Sum_probs=32.1
Q ss_pred CCCCcccccCCCCHHHHHHHHccCccccCCCCCCCCceeeecCCCCCchhHHHhchhhcCC
Q 046575 349 GSHPATFVRKDVSEKFLNRIRHGFNCSYNGFRTTMCFLFARKFHPNTLEPLLRIAPALLGF 409 (411)
Q Consensus 349 g~hP~~~~~~Dvt~e~l~~lr~~~~C~yng~~~~~~~LFARKF~~~~~~~LL~l~~~~~~~ 409 (411)
..||+.|+..- ..|..-|.+ .+ .-|||.......-++....-+||
T Consensus 8 ~~~~r~~grg~------------~rC~vcGr~--~g--~iRkfGL~~cR~cfRe~A~~iGF 52 (56)
T 3j20_P 8 KRKPRKFGKGA------------RRCIRCGQY--GP--IIRIQGLMLCRHCFREVAPKLGF 52 (56)
T ss_dssp CCSCCSSSSTT------------CCCSSSCCS--SS--CCCTTTCCCCHHHHHHHHHHHTC
T ss_pred CCCCcccCCCc------------eEeecCCCC--cc--cccccCChHHHHHHHHHHHhcCc
Confidence 46888888763 468877765 23 46999998777666666666777
No 7
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=6.89 E-value=1.1e+02 Score=24.21 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=17.4
Q ss_pred EecCCccccCChHHHHHHHhc
Q 046575 228 LLSETCIPLFNFTTVYNYLIN 248 (411)
Q Consensus 228 LLSgsdiPL~s~~~I~~~L~~ 248 (411)
+|..+|+|+++.+++.+-+..
T Consensus 60 ll~~~DFP~ksA~~lAd~iv~ 80 (84)
T 1iio_A 60 VLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHHH
T ss_pred hCCcccCCCCCHHHHHHHHHH
Confidence 567899999999999887653
No 8
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=6.54 E-value=1.8e+02 Score=19.75 Aligned_cols=9 Identities=33% Similarity=0.619 Sum_probs=7.3
Q ss_pred CCCChHHHH
Q 046575 113 HSMNDDELM 121 (411)
Q Consensus 113 ~~~~d~el~ 121 (411)
+.+|||||=
T Consensus 21 rpltDEeLD 29 (39)
T 3lqv_P 21 RPLSDEELD 29 (39)
T ss_dssp CCCCHHHHH
T ss_pred CCCCHHHHH
Confidence 478999984
No 9
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=6.43 E-value=2.2e+02 Score=20.93 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=5.6
Q ss_pred eeeeehhhhhhhhcc---ccccceeEEeehhHHhhhhhH
Q 046575 5 KIIVFAKELTIQFKR---EVGKGSFHVTTTIILLLSMAS 40 (411)
Q Consensus 5 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 40 (411)
|+..|.||..-.+|+ |-.+.-.+-+..|+.++...+
T Consensus 3 k~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~v~i~~ 41 (65)
T 3dl8_C 3 KLKEFLKGVRDELKRVVWPSRELVVKATISVIIFSLAIG 41 (65)
T ss_dssp -------------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCcCHHHHHHHHHHHHHHHHHHH
Confidence 588899988888864 333334444444444433333
No 10
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=6.42 E-value=3e+02 Score=22.15 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=25.7
Q ss_pred eeCCCCcccCCccHHHHHHHHHHHHHhCCCCCEEEEecCC
Q 046575 193 RIPSKPAEWGKASMIDAERRLLANALLDFSNERFVLLSET 232 (411)
Q Consensus 193 ~Ips~~V~WG~~SlVeAelrLL~~AL~d~~ndyFvLLSgs 232 (411)
.+....-.||.+|.-+||..|++.. .+ -.+.|=-|++
T Consensus 17 ~~~~~~WyhG~isR~eAe~lL~~~~-~~--G~FLVR~S~~ 53 (118)
T 2el8_A 17 RALETPSCFLKVSRLEAQLLLERYP-EC--GNLLLRPSGD 53 (118)
T ss_dssp CCSSSCTTCCCCCHHHHHHHHHHSS-TT--CSBEEEECCS
T ss_pred cccCCCceecCCCHHHHHHHHhhCC-CC--cEEEEeeCCC
Confidence 3455688899999999998887654 32 3445555554
Done!