Query 046577
Match_columns 878
No_of_seqs 473 out of 4200
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:34:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.8E-57 3.8E-62 525.6 21.5 522 1-575 306-846 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.8E-51 6E-56 502.8 39.0 551 1-702 340-910 (1153)
3 PLN00113 leucine-rich repeat r 100.0 5E-37 1.1E-41 378.7 30.0 534 207-836 69-608 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.2E-35 2.7E-40 366.4 28.3 517 229-842 69-591 (968)
5 KOG0472 Leucine-rich repeat pr 99.9 1.5E-29 3.3E-34 250.7 -11.3 479 209-776 47-540 (565)
6 KOG0472 Leucine-rich repeat pr 99.9 1.8E-29 3.9E-34 250.2 -13.0 487 229-833 45-539 (565)
7 KOG4194 Membrane glycoprotein 99.9 1.7E-26 3.7E-31 239.3 7.8 391 207-694 52-448 (873)
8 KOG4194 Membrane glycoprotein 99.9 1.3E-26 2.9E-31 240.2 5.6 377 206-653 77-468 (873)
9 KOG0618 Serine/threonine phosp 99.9 3.5E-27 7.6E-32 257.8 -0.7 418 215-693 6-438 (1081)
10 PLN03210 Resistant to P. syrin 99.9 1.2E-23 2.6E-28 259.3 23.0 317 443-836 610-944 (1153)
11 KOG0618 Serine/threonine phosp 99.9 6E-26 1.3E-30 248.3 -4.2 482 235-835 4-489 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 1.2E-25 2.6E-30 234.3 -4.1 366 206-668 6-376 (1255)
13 KOG0444 Cytoskeletal regulator 99.9 1.2E-25 2.7E-30 234.3 -5.7 337 193-576 40-380 (1255)
14 PF00931 NB-ARC: NB-ARC domain 99.8 4.2E-19 9.1E-24 187.2 5.8 131 4-136 149-284 (287)
15 KOG4237 Extracellular matrix p 99.7 7.9E-19 1.7E-23 175.0 -4.3 392 218-664 57-474 (498)
16 KOG4237 Extracellular matrix p 99.7 7.5E-18 1.6E-22 168.1 0.7 394 190-663 51-497 (498)
17 KOG0617 Ras suppressor protein 99.6 5.8E-18 1.3E-22 149.1 -4.1 168 219-405 23-192 (264)
18 PRK15387 E3 ubiquitin-protein 99.6 1.1E-14 2.4E-19 166.4 14.1 252 210-568 204-455 (788)
19 PRK15387 E3 ubiquitin-protein 99.6 2.2E-14 4.7E-19 164.0 16.4 252 189-511 205-456 (788)
20 KOG0617 Ras suppressor protein 99.6 7.1E-17 1.5E-21 142.3 -4.8 158 201-364 27-186 (264)
21 PRK15370 E3 ubiquitin-protein 99.6 1.6E-14 3.4E-19 166.5 12.2 180 208-420 179-358 (754)
22 PRK15370 E3 ubiquitin-protein 99.5 4.5E-14 9.7E-19 162.7 11.2 246 230-569 179-426 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.5 7.5E-14 1.6E-18 163.4 11.9 161 219-394 513-676 (889)
24 KOG4341 F-box protein containi 99.5 7.3E-16 1.6E-20 155.5 -7.8 141 710-854 317-460 (483)
25 KOG4341 F-box protein containi 99.3 1.1E-13 2.4E-18 140.0 -3.5 296 472-831 162-461 (483)
26 cd00116 LRR_RI Leucine-rich re 99.3 2.4E-12 5.3E-17 138.3 3.8 14 498-511 276-289 (319)
27 cd00116 LRR_RI Leucine-rich re 99.3 3.2E-12 6.8E-17 137.4 4.6 140 250-398 17-177 (319)
28 KOG0532 Leucine-rich repeat (L 99.1 6.3E-12 1.4E-16 132.0 -3.2 177 208-405 76-253 (722)
29 KOG0532 Leucine-rich repeat (L 99.0 8.6E-12 1.9E-16 131.0 -4.0 147 209-364 100-247 (722)
30 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.3E-14 102.8 4.9 107 254-364 17-126 (175)
31 PF14580 LRR_9: Leucine-rich r 98.9 1.8E-09 3.9E-14 101.3 6.1 132 219-358 9-147 (175)
32 KOG3207 Beta-tubulin folding c 98.8 2.5E-09 5.5E-14 109.5 3.1 63 253-315 118-184 (505)
33 COG4886 Leucine-rich repeat (L 98.8 5.5E-09 1.2E-13 115.6 5.6 176 207-402 116-293 (394)
34 KOG1259 Nischarin, modulator o 98.8 1.4E-09 3.1E-14 105.4 0.6 134 255-403 283-416 (490)
35 KOG1259 Nischarin, modulator o 98.7 1.5E-09 3.3E-14 105.2 0.0 129 228-364 283-412 (490)
36 COG4886 Leucine-rich repeat (L 98.7 1E-08 2.2E-13 113.5 5.5 127 229-362 116-243 (394)
37 KOG2120 SCF ubiquitin ligase, 98.5 2.8E-09 6E-14 103.5 -5.3 168 649-833 205-374 (419)
38 KOG3207 Beta-tubulin folding c 98.5 2.2E-08 4.7E-13 102.8 -0.0 204 205-415 119-333 (505)
39 KOG1909 Ran GTPase-activating 98.5 6.3E-08 1.4E-12 96.8 3.0 172 299-511 88-281 (382)
40 KOG2120 SCF ubiquitin ligase, 98.5 7.6E-09 1.7E-13 100.5 -3.7 59 281-339 187-247 (419)
41 PLN03150 hypothetical protein; 98.5 5E-07 1.1E-11 104.6 9.7 107 257-364 419-528 (623)
42 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 4.9E-12 71.3 4.3 57 257-313 2-59 (61)
43 PF13855 LRR_8: Leucine rich r 98.4 2.3E-07 5E-12 71.2 3.7 60 229-291 1-61 (61)
44 PLN03150 hypothetical protein; 98.4 5.8E-07 1.2E-11 104.1 8.4 107 280-398 419-527 (623)
45 PRK15386 type III secretion pr 98.4 7.4E-07 1.6E-11 94.0 8.1 139 650-833 48-188 (426)
46 PRK15386 type III secretion pr 98.3 2.4E-06 5.2E-11 90.2 9.2 160 628-836 51-214 (426)
47 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.4E-12 105.2 -0.8 129 255-401 71-201 (414)
48 KOG1909 Ran GTPase-activating 98.2 2.5E-07 5.4E-12 92.6 -1.2 196 277-511 90-309 (382)
49 KOG0531 Protein phosphatase 1, 98.0 5.6E-07 1.2E-11 99.6 -1.8 104 227-337 93-197 (414)
50 KOG2982 Uncharacterized conser 98.0 3.4E-06 7.4E-11 82.5 2.6 70 497-574 196-265 (418)
51 KOG1947 Leucine rich repeat pr 97.9 7.7E-07 1.7E-11 101.8 -3.6 41 798-838 403-443 (482)
52 KOG1859 Leucine-rich repeat pr 97.9 1.1E-06 2.3E-11 96.0 -2.3 131 256-402 164-295 (1096)
53 PF12799 LRR_4: Leucine Rich r 97.9 1.7E-05 3.7E-10 55.5 4.3 38 304-342 2-39 (44)
54 KOG3665 ZYG-1-like serine/thre 97.8 7.6E-06 1.7E-10 94.4 2.4 128 207-337 122-261 (699)
55 PF12799 LRR_4: Leucine Rich r 97.8 2.9E-05 6.4E-10 54.3 4.3 38 280-318 2-39 (44)
56 KOG4579 Leucine-rich repeat (L 97.8 2.7E-06 5.8E-11 73.5 -1.7 107 211-321 31-141 (177)
57 KOG2982 Uncharacterized conser 97.8 1.5E-05 3.3E-10 78.1 3.2 84 253-337 68-157 (418)
58 KOG1859 Leucine-rich repeat pr 97.8 6.9E-07 1.5E-11 97.4 -7.0 128 228-364 163-292 (1096)
59 COG5238 RNA1 Ran GTPase-activa 97.7 4E-05 8.7E-10 74.2 4.1 137 254-398 28-197 (388)
60 KOG1947 Leucine rich repeat pr 97.6 7.2E-06 1.6E-10 93.8 -2.6 214 628-854 187-409 (482)
61 KOG3665 ZYG-1-like serine/thre 97.5 6.4E-05 1.4E-09 86.9 3.9 107 228-337 121-231 (699)
62 KOG4579 Leucine-rich repeat (L 97.4 2.1E-05 4.5E-10 68.1 -1.6 90 253-344 50-140 (177)
63 KOG1644 U2-associated snRNP A' 97.1 0.00095 2.1E-08 62.3 5.5 41 252-292 60-101 (233)
64 KOG1644 U2-associated snRNP A' 96.9 0.0018 3.8E-08 60.6 5.6 83 208-293 43-127 (233)
65 PF13306 LRR_5: Leucine rich r 96.3 0.013 2.8E-07 52.9 7.5 117 227-353 10-128 (129)
66 KOG2739 Leucine-rich acidic nu 96.0 0.0025 5.5E-08 62.3 1.2 82 255-337 42-127 (260)
67 PF13306 LRR_5: Leucine rich r 96.0 0.019 4.2E-07 51.8 6.7 108 247-360 3-112 (129)
68 KOG2739 Leucine-rich acidic nu 95.7 0.008 1.7E-07 58.9 3.2 57 279-337 91-154 (260)
69 KOG3864 Uncharacterized conser 95.5 0.0018 4E-08 60.5 -1.9 43 473-515 124-166 (221)
70 KOG2123 Uncharacterized conser 95.5 0.0012 2.5E-08 64.6 -3.3 78 280-361 20-98 (388)
71 KOG3864 Uncharacterized conser 95.4 0.0041 8.8E-08 58.3 -0.1 46 496-547 121-166 (221)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0081 1.8E-07 34.8 0.9 17 305-321 2-18 (22)
73 COG5238 RNA1 Ran GTPase-activa 95.2 0.0048 1E-07 60.2 -0.2 63 301-364 155-227 (388)
74 PF00560 LRR_1: Leucine Rich R 95.1 0.0084 1.8E-07 34.7 0.6 19 281-300 2-20 (22)
75 PRK04841 transcriptional regul 94.2 0.79 1.7E-05 57.0 15.8 146 11-184 185-333 (903)
76 KOG2123 Uncharacterized conser 94.2 0.0024 5.2E-08 62.5 -5.0 81 250-332 35-123 (388)
77 KOG0473 Leucine-rich repeat pr 93.6 0.0035 7.7E-08 59.7 -5.0 84 253-337 39-122 (326)
78 PF13504 LRR_7: Leucine rich r 92.6 0.076 1.6E-06 28.4 1.4 16 257-272 2-17 (17)
79 PF13504 LRR_7: Leucine rich r 92.3 0.099 2.1E-06 28.0 1.6 15 304-318 2-16 (17)
80 KOG0473 Leucine-rich repeat pr 89.7 0.013 2.8E-07 56.0 -5.8 84 228-316 41-124 (326)
81 smart00369 LRR_TYP Leucine-ric 86.6 0.62 1.4E-05 28.1 2.2 19 303-321 2-20 (26)
82 smart00370 LRR Leucine-rich re 86.6 0.62 1.4E-05 28.1 2.2 19 303-321 2-20 (26)
83 smart00367 LRR_CC Leucine-rich 83.8 0.7 1.5E-05 27.9 1.4 17 821-837 1-17 (26)
84 smart00370 LRR Leucine-rich re 83.4 0.94 2E-05 27.3 1.9 23 325-348 1-23 (26)
85 smart00369 LRR_TYP Leucine-ric 83.4 0.94 2E-05 27.3 1.9 23 325-348 1-23 (26)
86 TIGR03015 pepcterm_ATPase puta 72.2 15 0.00032 37.9 8.2 56 4-59 184-242 (269)
87 PF13516 LRR_6: Leucine Rich r 70.6 1.5 3.3E-05 25.8 0.2 15 279-293 2-16 (24)
88 smart00364 LRR_BAC Leucine-ric 63.4 4.4 9.6E-05 24.4 1.1 17 257-273 3-19 (26)
89 PRK00080 ruvB Holliday junctio 63.1 1.5E+02 0.0033 31.5 13.8 134 5-162 173-309 (328)
90 smart00365 LRR_SD22 Leucine-ri 54.6 11 0.00023 22.9 1.8 14 303-316 2-15 (26)
91 KOG4308 LRR-containing protein 50.9 0.49 1.1E-05 52.8 -7.9 15 254-268 170-184 (478)
92 TIGR00635 ruvB Holliday juncti 47.7 3.1E+02 0.0067 28.7 13.0 52 5-57 152-203 (305)
93 smart00368 LRR_RI Leucine rich 39.6 20 0.00044 22.0 1.4 12 257-268 3-14 (28)
94 KOG4308 LRR-containing protein 36.0 2.3 5E-05 47.5 -5.6 13 228-240 171-183 (478)
95 KOG3763 mRNA export factor TAP 26.9 34 0.00074 38.1 1.5 63 442-511 216-281 (585)
96 PF14050 Nudc_N: N-terminal co 26.3 1.1E+02 0.0023 23.3 3.6 31 34-64 3-33 (62)
97 COG3899 Predicted ATPase [Gene 25.4 7E+02 0.015 30.7 12.4 116 5-129 212-334 (849)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-57 Score=525.62 Aligned_cols=522 Identities=28% Similarity=0.392 Sum_probs=363.1
Q ss_pred CCCCccEEccCCChHHHHHHHHHhcCCC--CCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCCch-hHHHHHHHhcCC
Q 046577 1 MGSEDNFLINNLNEEEAGRLFKMMAGDD--VENRELKSTAIDVARACGGLPIALTTVAKALRGKSLH-EWKNSLRELRTP 77 (878)
Q Consensus 1 m~~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k~~~-~W~~~l~~l~~~ 77 (878)
||++..+++++|+++|||+||+++||+. ...+.++++|++||++|+|+|||++|||+.|+.|.+. ||+++.+.+.+.
T Consensus 306 m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~ 385 (889)
T KOG4658|consen 306 MGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSS 385 (889)
T ss_pred ccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccccc
Confidence 7889999999999999999999999643 3445599999999999999999999999999999876 599999998877
Q ss_pred CCCCcCCchhhHHHHHHHHHhcCCCchhHHHHHHhccCCCC--CChhHHHHHHhhcccccCcchHHHHHHHHHHHHHHHH
Q 046577 78 SMVNFEGVSAETYSSIELSFKYLKGGQLKELFQLCSLMGNS--IPTLKLLKYSIGLGIFQGVNKMEDARNKLYALVHELR 155 (878)
Q Consensus 78 ~~~~~~~~~~~i~~~L~lSy~~L~~~~lk~cFly~~~fp~~--i~~~~li~~w~~~g~~~~~~~~e~~~~~~~~~l~~L~ 155 (878)
...+.++..+.|+++|++|||+||++ +|.||+|||+|||| |++++||.+|+||||+++.+..+.+.+.+++|+.+||
T Consensus 386 ~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV 464 (889)
T KOG4658|consen 386 LAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELV 464 (889)
T ss_pred ccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHH
Confidence 55566666788999999999999965 99999999999996 6789999999999999873333333444455699999
Q ss_pred hcccccccC---CCCcEEccHHHHHHHHHHhh-----cccceEEeeCCCCCCCCCccccccceEEEEeccccccCCCCCC
Q 046577 156 DSCLLLEGD---SNKLISMHDVVRDVARSIAC-----RDQHVFVVENEDVWELPDKESLKKCYAISIRYCCIHELPNALE 227 (878)
Q Consensus 156 ~r~l~~~~~---~~~~~~mHdl~~~l~~~~~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~ 227 (878)
+++|++..+ ...+|+|||+|||||.++++ +|+.++.. +......++......+|++++.++.+..++....
T Consensus 465 ~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~-~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~ 543 (889)
T KOG4658|consen 465 RASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSD-GVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE 543 (889)
T ss_pred HHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEEC-CcCccccccccchhheeEEEEeccchhhccCCCC
Confidence 999998654 34789999999999999999 66644422 2234446666667889999999999999999988
Q ss_pred CCCccEEEcCCCCC-ccccCcChhhhhCCCCCcEEEeeCC-CCCCCccccccccCccEEEecCccccccchhhhcCCCCC
Q 046577 228 CPQLEFLCMSPEDS-SLEVSIPENFFVGMRKLKVVDFTGM-QLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENL 305 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~-~~~~~l~~~~~~~l~~Lr~L~L~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L 305 (878)
+++|++|.+.+|.. ... ++..+|..+++||+|||++| .+..+|+.++.|.|||||+++++.+.. +|..+++|+.|
T Consensus 544 ~~~L~tLll~~n~~~l~~--is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L 620 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE--ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKL 620 (889)
T ss_pred CCccceEEEeecchhhhh--cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhh
Confidence 89999999999863 222 88888999999999999976 456888888888888888888888876 88888888888
Q ss_pred CEEEcCCCC-CcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcC
Q 046577 306 EILSFVRSD-TVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMH 384 (878)
Q Consensus 306 ~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 384 (878)
.+||+..+. +..+|.....|.+||+|.+.... . ......++.+.+|++|..-.+.... ......+..
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~-~~~~~~l~el~~Le~L~~ls~~~~s----------~~~~e~l~~ 688 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-L-SNDKLLLKELENLEHLENLSITISS----------VLLLEDLLG 688 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc-c-ccchhhHHhhhcccchhhheeecch----------hHhHhhhhh
Confidence 888887774 33444445557788877776543 1 1111113333333333222111110 001122222
Q ss_pred CCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCC
Q 046577 385 LRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQ 464 (878)
Q Consensus 385 l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~ 464 (878)
+..|+++...-. +.. ..... ....+..+.+|+.|.+.+|.+.++.....
T Consensus 689 ~~~L~~~~~~l~------------------~~~----------~~~~~---~~~~~~~l~~L~~L~i~~~~~~e~~~~~~ 737 (889)
T KOG4658|consen 689 MTRLRSLLQSLS------------------IEG----------CSKRT---LISSLGSLGNLEELSILDCGISEIVIEWE 737 (889)
T ss_pred hHHHHHHhHhhh------------------hcc----------cccce---eecccccccCcceEEEEcCCCchhhcccc
Confidence 222221111000 000 00000 11112268889999999886543211111
Q ss_pred CCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCC--CcccCccccee-cccc
Q 046577 465 IPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVI--PYFVFPQLTTL-RLQD 541 (878)
Q Consensus 465 ~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~--~~~~~p~L~~L-~l~~ 541 (878)
........|+++.++.+.+|...+...+ ..-.|+|+.|.+..|..++++.......... ....|+++..+ .+.+
T Consensus 738 ~~~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~ 814 (889)
T KOG4658|consen 738 ESLIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS 814 (889)
T ss_pred cccchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeec
Confidence 1111010267888888888888877644 4456899999999998776654432221110 01246666666 4666
Q ss_pred ccccccccCCCCcCCCCCccEEEEccCCCccchh
Q 046577 542 LPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFA 575 (878)
Q Consensus 542 c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp 575 (878)
.+.+..+.... -.++.|+.+.+..||++..+|
T Consensus 815 l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 815 LGGLPQLYWLP--LSFLKLEELIVEECPKLGKLP 846 (889)
T ss_pred CCCCceeEecc--cCccchhheehhcCcccccCc
Confidence 56666554433 236779999999999987764
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.8e-51 Score=502.76 Aligned_cols=551 Identities=23% Similarity=0.287 Sum_probs=340.0
Q ss_pred CCCCccEEccCCChHHHHHHHHHhcC-CCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCCchhHHHHHHHhcCCCC
Q 046577 1 MGSEDNFLINNLNEEEAGRLFKMMAG-DDVENRELKSTAIDVARACGGLPIALTTVAKALRGKSLHEWKNSLRELRTPSM 79 (878)
Q Consensus 1 m~~~~~~~l~~L~~~~~~~Lf~~~a~-~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k~~~~W~~~l~~l~~~~~ 79 (878)
+|++++|+|+.|+++|||+||+++|+ +..+++++++++++||++|+|+||||+++|++|++++..+|+++++++++.
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~-- 417 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNG-- 417 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhC--
Confidence 46789999999999999999999995 445667899999999999999999999999999999888899999998765
Q ss_pred CCcCCchhhHHHHHHHHHhcCCCchhHHHHHHhccCCCCCChhHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHhccc
Q 046577 80 VNFEGVSAETYSSIELSFKYLKGGQLKELFQLCSLMGNSIPTLKLLKYSIGLGIFQGVNKMEDARNKLYALVHELRDSCL 159 (878)
Q Consensus 80 ~~~~~~~~~i~~~L~lSy~~L~~~~lk~cFly~~~fp~~i~~~~li~~w~~~g~~~~~~~~e~~~~~~~~~l~~L~~r~l 159 (878)
.+.+|.++|++|||+|+++..|.||+|||.|+.+.+.+. +..|.+.+.++. +. .++.|+++||
T Consensus 418 -----~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~~--------~~---~l~~L~~ksL 480 (1153)
T PLN03210 418 -----LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLDV--------NI---GLKNLVDKSL 480 (1153)
T ss_pred -----ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCCc--------hh---ChHHHHhcCC
Confidence 456799999999999986436999999999988766644 566776655431 11 1889999999
Q ss_pred ccccCCCCcEEccHHHHHHHHHHhhcccceEEeeCCCCCCCCC---------ccccccceEEEEeccccccCCCCCCCCC
Q 046577 160 LLEGDSNKLISMHDVVRDVARSIACRDQHVFVVENEDVWELPD---------KESLKKCYAISIRYCCIHELPNALECPQ 230 (878)
Q Consensus 160 ~~~~~~~~~~~mHdl~~~l~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~~L~l~~~~~~~l~~~~~~~~ 230 (878)
++.. .++++|||++|+||+.+++++.. ..+.+..-|.. .....+++.+++....+.++.
T Consensus 481 i~~~--~~~~~MHdLl~~~~r~i~~~~~~---~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~------- 548 (1153)
T PLN03210 481 IHVR--EDIVEMHSLLQEMGKEIVRAQSN---EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELH------- 548 (1153)
T ss_pred EEEc--CCeEEhhhHHHHHHHHHHHhhcC---CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceee-------
Confidence 9653 46799999999999999987631 01111111111 112234555555433332211
Q ss_pred ccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC-------CCcccccccc-CccEEEecCccccccchhhhcCC
Q 046577 231 LEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF-------SLPSSIDLLV-KLKTLCLDESILRDIDIAIIGKL 302 (878)
Q Consensus 231 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-------~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~i~~L 302 (878)
+....|.++++|++|.+..+... .+|+.+..++ +||+|.+.++.+.. +|..+ .+
T Consensus 549 ----------------i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f-~~ 610 (1153)
T PLN03210 549 ----------------IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNF-RP 610 (1153)
T ss_pred ----------------ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcC-Cc
Confidence 33344555555555555433211 2344444432 35555555555444 44444 34
Q ss_pred CCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhh
Q 046577 303 ENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDEL 382 (878)
Q Consensus 303 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 382 (878)
.+|+.|++.++.+..+|.++..+++|+.|+++++..++.+|. ++.+++|++|++++|... ...+..+
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L-----------~~lp~si 677 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL-----------VELPSSI 677 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc-----------cccchhh
Confidence 555555555555555555555555555555555544455543 455555555555554432 1233444
Q ss_pred cCCCCCcEEEEEecC-CCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccc-cceeec
Q 046577 383 MHLRWLTTLEIDVKN-ESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEI-NVDKIW 460 (878)
Q Consensus 383 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~-~l~~~~ 460 (878)
+.+++|+.|++++|. ...+|... .+++|+.|++++| .+..
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i------------------------------------~l~sL~~L~Lsgc~~L~~-- 719 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGI------------------------------------NLKSLYRLNLSGCSRLKS-- 719 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcC------------------------------------CCCCCCEEeCCCCCCccc--
Confidence 555555555555432 22222211 2445555555555 3321
Q ss_pred ccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccc
Q 046577 461 HYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQ 540 (878)
Q Consensus 461 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~ 540 (878)
+|. ...+|+.|++.+ +.++.+ |. ...+++|++|.+.++.. ..+..............+++|+.|+++
T Consensus 720 ---~p~-----~~~nL~~L~L~~-n~i~~l-P~--~~~l~~L~~L~l~~~~~-~~l~~~~~~l~~~~~~~~~sL~~L~Ls 786 (1153)
T PLN03210 720 ---FPD-----ISTNISWLDLDE-TAIEEF-PS--NLRLENLDELILCEMKS-EKLWERVQPLTPLMTMLSPSLTRLFLS 786 (1153)
T ss_pred ---ccc-----ccCCcCeeecCC-Cccccc-cc--cccccccccccccccch-hhccccccccchhhhhccccchheeCC
Confidence 111 134555555555 334443 21 12455566665555441 111110000000000124677777777
Q ss_pred cccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCcccccc
Q 046577 541 DLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQ 620 (878)
Q Consensus 541 ~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 620 (878)
+|+.+..++.. ...+++|+.|++++|++++.+|.. ..+++|+.|++++|......+
T Consensus 787 ~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~----------------------~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 787 DIPSLVELPSS--IQNLHKLEHLEIENCINLETLPTG----------------------INLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred CCCCccccChh--hhCCCCCCEEECCCCCCcCeeCCC----------------------CCccccCEEECCCCCcccccc
Confidence 77766666543 345777888888888777776521 246777888888876543332
Q ss_pred ccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeeccccccccccccccccceeeccccccccc
Q 046577 621 ADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQ 700 (878)
Q Consensus 621 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 700 (878)
. ..++|+.|++.++.+..+|.+ +..+++|+.|++++|+++..++.. ...+++|+.+++++|++|+.
T Consensus 843 ~-----~~~nL~~L~Ls~n~i~~iP~s--i~~l~~L~~L~L~~C~~L~~l~~~-------~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 843 D-----ISTNISDLNLSRTGIEEVPWW--IEKFSNLSFLDMNGCNNLQRVSLN-------ISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred c-----cccccCEeECCCCCCccChHH--HhcCCCCCEEECCCCCCcCccCcc-------cccccCCCeeecCCCccccc
Confidence 2 136788888877788888886 888899999999999888877442 44678888889999988876
Q ss_pred cc
Q 046577 701 LC 702 (878)
Q Consensus 701 l~ 702 (878)
+.
T Consensus 909 ~~ 910 (1153)
T PLN03210 909 AS 910 (1153)
T ss_pred cc
Confidence 54
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5e-37 Score=378.73 Aligned_cols=534 Identities=18% Similarity=0.157 Sum_probs=345.6
Q ss_pred ccceEEEEeccccccCC-CCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC-CCccccccccCccE
Q 046577 207 KKCYAISIRYCCIHELP-NAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF-SLPSSIDLLVKLKT 283 (878)
Q Consensus 207 ~~~~~L~l~~~~~~~l~-~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L~~ 283 (878)
.+++.|+++++.+.... ..+ .+++|++|++++|..... +|.++|.++++||+|++++|.+. .+|. +.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~--ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP--IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCc--CChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 46889999988776443 333 789999999999987644 99998889999999999999987 4564 56899999
Q ss_pred EEecCccccccchhhhcCCCCCCEEEcCCCCCc-ccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCc
Q 046577 284 LCLDESILRDIDIAIIGKLENLEILSFVRSDTV-QLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCS 362 (878)
Q Consensus 284 L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 362 (878)
|++++|.+.+.+|..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc
Confidence 999999998778999999999999999999876 78889999999999999999844566766 8999999999999988
Q ss_pred chhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCC-cCCchh-hhcccccccccccCccccccccccccccccccccc
Q 046577 363 IEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNES-MLPAGF-LARKLERQVSQEESTTTYCSSEITLDTSTLLFNEK 440 (878)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~ 440 (878)
+. +..+..++.+++|++|++++|... .+|..+ .+.+|+.+.+..+.+...... .+.
T Consensus 224 l~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---------~l~-- 281 (968)
T PLN00113 224 LS-----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP---------SIF-- 281 (968)
T ss_pred cC-----------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch---------hHh--
Confidence 76 456778899999999999988754 455544 455666666655444322111 111
Q ss_pred ccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcc
Q 046577 441 VALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISEN 520 (878)
Q Consensus 441 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 520 (878)
.+++|++|++++|.+... + |.+ +..+++|+.|+++++. +....| ..++.+++|+.|++++|.....++...
T Consensus 282 -~l~~L~~L~Ls~n~l~~~----~-p~~-~~~l~~L~~L~l~~n~-~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 282 -SLQKLISLDLSDNSLSGE----I-PEL-VIQLQNLEILHLFSNN-FTGKIP-VALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred -hccCcCEEECcCCeeccC----C-Chh-HcCCCCCcEEECCCCc-cCCcCC-hhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 466777777777755421 1 111 1246677777777643 333222 335667777777777776322333222
Q ss_pred cCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccc
Q 046577 521 RADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEK 600 (878)
Q Consensus 521 ~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (878)
. .+++|+.|+++++ +++...... ...+++|+.|++.+|+--..+|. ...
T Consensus 353 ~--------~~~~L~~L~Ls~n-~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~~p~---------------------~~~ 401 (968)
T PLN00113 353 G--------KHNNLTVLDLSTN-NLTGEIPEG-LCSSGNLFKLILFSNSLEGEIPK---------------------SLG 401 (968)
T ss_pred h--------CCCCCcEEECCCC-eeEeeCChh-HhCcCCCCEEECcCCEecccCCH---------------------HHh
Confidence 2 3667777777764 232211111 22356677777776543223321 114
Q ss_pred cCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeeccccccccc
Q 046577 601 ILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKH 680 (878)
Q Consensus 601 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 680 (878)
.+++|+.|++++|......+..+ ..+++|+.|++++|.+...... .+..+++|+.|++++|.....++...
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~~~------ 472 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISNNNLQGRINS-RKWDMPSLQMLSLARNKFFGGLPDSF------ 472 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhH--hcCCCCCEEECcCCcccCccCh-hhccCCCCcEEECcCceeeeecCccc------
Confidence 46777777777777554444333 2357777777755544433222 35667777777777765444333211
Q ss_pred cccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHH
Q 046577 681 VGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTA 760 (878)
Q Consensus 681 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 760 (878)
..++|+.|++++|.-...++.. ...+++|+.|++++|. +....|..+..+++|++|+|++|.-...+ +..+
T Consensus 473 --~~~~L~~L~ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~ 543 (968)
T PLN00113 473 --GSKRLENLDLSRNQFSGAVPRK----LGSLSELMQLKLSENK-LSGEIPDELSSCKKLVSLDLSHNQLSGQI--PASF 543 (968)
T ss_pred --ccccceEEECcCCccCCccChh----hhhhhccCEEECcCCc-ceeeCChHHcCccCCCEEECCCCcccccC--ChhH
Confidence 2467777777776533332221 1456677777777743 33333655677777777777776433333 3456
Q ss_pred hhcccccEEEEcccccccceecccccccccceeeeccccceecccCCCcceeeccCceeecCCcceeecccCCCcc
Q 046577 761 KTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFPSLQELGVICCPKMK 836 (878)
Q Consensus 761 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 836 (878)
..+++|+.|++++|.....+|....+ +++|+.|++++|+-...+|..+ .+.++....+.+.+.+.
T Consensus 544 ~~l~~L~~L~Ls~N~l~~~~p~~l~~--------l~~L~~l~ls~N~l~~~~p~~~---~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 544 SEMPVLSQLDLSQNQLSGEIPKNLGN--------VESLVQVNISHNHLHGSLPSTG---AFLAINASAVAGNIDLC 608 (968)
T ss_pred hCcccCCEEECCCCcccccCChhHhc--------CcccCEEeccCCcceeeCCCcc---hhcccChhhhcCCcccc
Confidence 67777777777777544455554433 6777777777777666666554 33444444455555443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-35 Score=366.42 Aligned_cols=517 Identities=17% Similarity=0.130 Sum_probs=386.6
Q ss_pred CCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC-CCccccc-cccCccEEEecCccccccchhhhcCCCCCC
Q 046577 229 PQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF-SLPSSID-LLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~-~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+++.|+++++..... ++. .|..+++|++|+|++|.+. .+|..+. .+.+|++|++++|.+.+..|. +.+.+|+
T Consensus 69 ~~v~~L~L~~~~i~~~--~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 69 SRVVSIDLSGKNISGK--ISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143 (968)
T ss_pred CcEEEEEecCCCcccc--CCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence 5799999999876653 555 4789999999999999997 7887665 899999999999999875664 5789999
Q ss_pred EEEcCCCCCc-ccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCC
Q 046577 307 ILSFVRSDTV-QLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHL 385 (878)
Q Consensus 307 ~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (878)
+|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. +..+..++++
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l 211 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV-----------GQIPRELGQM 211 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc-----------CcCChHHcCc
Confidence 9999999887 78999999999999999999844566766 899999999999999876 4567889999
Q ss_pred CCCcEEEEEecCCC-cCCchh-hhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccC
Q 046577 386 RWLTTLEIDVKNES-MLPAGF-LARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYN 463 (878)
Q Consensus 386 ~~L~~L~l~~~~~~-~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~ 463 (878)
++|+.|++++|... .+|..+ .+.+|+.+++..+.+...... .+. .+++|+.|++++|.+...
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---------~l~---~l~~L~~L~L~~n~l~~~---- 275 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS---------SLG---NLKNLQYLFLYQNKLSGP---- 275 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh---------hHh---CCCCCCEEECcCCeeecc----
Confidence 99999999998865 566655 677888888876665432221 222 688999999999876532
Q ss_pred CCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceecccccc
Q 046577 464 QIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLP 543 (878)
Q Consensus 464 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 543 (878)
. |.++ ..+++|+.|++++|. +....| ..+..+++|++|++++|......+.... .+++|+.|+++++.
T Consensus 276 ~-p~~l-~~l~~L~~L~Ls~n~-l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~--------~l~~L~~L~L~~n~ 343 (968)
T PLN00113 276 I-PPSI-FSLQKLISLDLSDNS-LSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALT--------SLPRLQVLQLWSNK 343 (968)
T ss_pred C-chhH-hhccCcCEEECcCCe-eccCCC-hhHcCCCCCcEEECCCCccCCcCChhHh--------cCCCCCEEECcCCC
Confidence 2 2221 257899999999854 444333 4478899999999999873333333222 48899999999854
Q ss_pred ccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCccccccccC
Q 046577 544 KLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQADF 623 (878)
Q Consensus 544 ~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 623 (878)
-...++. ....+++|+.|++++|.--..+|. ....+++|+.|++++|......+..+
T Consensus 344 l~~~~p~--~l~~~~~L~~L~Ls~n~l~~~~p~---------------------~~~~~~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 344 FSGEIPK--NLGKHNNLTVLDLSTNNLTGEIPE---------------------GLCSSGNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred CcCcCCh--HHhCCCCCcEEECCCCeeEeeCCh---------------------hHhCcCCCCEEECcCCEecccCCHHH
Confidence 2222322 134578899999998643333331 11446789999999998665544433
Q ss_pred ccccccCCcEEEEecCCCC-ccchhHHHHHcCCCceEEEeccCccceeeccccccccccccccccceeeccccccccccc
Q 046577 624 PQHLFGSLKRLVIAEDDSA-GFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLC 702 (878)
Q Consensus 624 ~~~~~~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~ 702 (878)
..+++|+.|++.+|.+. .+|.. +..+++|+.|++++|. +.... +..+..+++|+.|++++|.-...++
T Consensus 401 --~~~~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~Ls~N~-l~~~~------~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 401 --GACRSLRRVRLQDNSFSGELPSE--FTKLPLVYFLDISNNN-LQGRI------NSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred --hCCCCCCEEECcCCEeeeECChh--HhcCCCCCEEECcCCc-ccCcc------ChhhccCCCCcEEECcCceeeeecC
Confidence 34789999999665554 56664 8999999999999765 33221 3334578999999999987655544
Q ss_pred ccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHHhhcccccEEEEcccccccceec
Q 046577 703 KQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLGVYGCRAMTEVVI 782 (878)
Q Consensus 703 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~ 782 (878)
.. ...++|+.|++++|. ++...|..+..+++|+.|++++|.-...+ +..+.++++|++|+|++|.-...+|.
T Consensus 470 ~~-----~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~ 541 (968)
T PLN00113 470 DS-----FGSKRLENLDLSRNQ-FSGAVPRKLGSLSELMQLKLSENKLSGEI--PDELSSCKKLVSLDLSHNQLSGQIPA 541 (968)
T ss_pred cc-----cccccceEEECcCCc-cCCccChhhhhhhccCEEECcCCcceeeC--ChHHcCccCCCEEECCCCcccccCCh
Confidence 32 245789999999965 44444777889999999999998544444 45678899999999999854445554
Q ss_pred ccccccccceeeeccccceecccCCCcceeeccCceeecCCcceeecccCCCccccCCCC
Q 046577 783 NDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFPSLQELGVICCPKMKIFTTGE 842 (878)
Q Consensus 783 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp~~~ 842 (878)
...+ +++|++|++++|.-...+|... ..+++|+.|++++|+-...+|..+
T Consensus 542 ~~~~--------l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~l~ls~N~l~~~~p~~~ 591 (968)
T PLN00113 542 SFSE--------MPVLSQLDLSQNQLSGEIPKNL--GNVESLVQVNISHNHLHGSLPSTG 591 (968)
T ss_pred hHhC--------cccCCEEECCCCcccccCChhH--hcCcccCEEeccCCcceeeCCCcc
Confidence 4433 8999999999988776777654 268899999999998877788654
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.5e-29 Score=250.73 Aligned_cols=479 Identities=20% Similarity=0.221 Sum_probs=283.0
Q ss_pred ceEEEEeccccccCCCCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEec
Q 046577 209 CYAISIRYCCIHELPNAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLD 287 (878)
Q Consensus 209 ~~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~ 287 (878)
+..+.+++|++..+.... .+..+.+|.+++|.... +|+++ +.+..+..|+.++|++..+|+.++.+..|+.|+.+
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~---lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQ---LPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhh---CCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 445566666666655544 56677777777776654 66664 67777777777777777777777777777777777
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHH
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEV 367 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 367 (878)
+|.... +|++|+.+..|+.++..+|++..+|.+++.+.+|..+++.+|. ++..|+..+. ++.|++|+...|-..
T Consensus 123 ~n~~~e-l~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~--- 196 (565)
T KOG0472|consen 123 SNELKE-LPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLE--- 196 (565)
T ss_pred ccceee-cCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhh---
Confidence 777776 7777777777777777777777777777777777777777776 6677766443 777777776555443
Q ss_pred hhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcc
Q 046577 368 ERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLE 447 (878)
Q Consensus 368 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~ 447 (878)
..+++++.+.+|..|++..|.+..+|..-..+.|..+....+.++-+..... ..++++.
T Consensus 197 ---------tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~------------~~L~~l~ 255 (565)
T KOG0472|consen 197 ---------TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHL------------KHLNSLL 255 (565)
T ss_pred ---------cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHh------------cccccce
Confidence 4566777777777777777777666633355556666555555444433211 1688999
Q ss_pred eeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCC
Q 046577 448 ALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIP 527 (878)
Q Consensus 448 ~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 527 (878)
.|++.+|+++++..+ ++ .+.+|++|++++ +.++.+++. ++++ +|+.|-+.|++ +..+-.+....++
T Consensus 256 vLDLRdNklke~Pde------~c-lLrsL~rLDlSN-N~is~Lp~s--Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT-- 321 (565)
T KOG0472|consen 256 VLDLRDNKLKEVPDE------IC-LLRSLERLDLSN-NDISSLPYS--LGNL-HLKFLALEGNP-LRTIRREIISKGT-- 321 (565)
T ss_pred eeeccccccccCchH------HH-HhhhhhhhcccC-CccccCCcc--cccc-eeeehhhcCCc-hHHHHHHHHcccH--
Confidence 999999998876332 22 478899999999 788887443 8898 99999999999 6665443222111
Q ss_pred cccCcccceecc-ccccccccccCCC------C------cCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCC
Q 046577 528 YFVFPQLTTLRL-QDLPKLRCLYPGM------H------TPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQP 594 (878)
Q Consensus 528 ~~~~p~L~~L~l-~~c~~L~~~~~~~------~------~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~ 594 (878)
-.-|++|.= ..|..+..-..+. . ....-+.+.|.+++ .+++.+|.........
T Consensus 322 ---~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~---------- 387 (565)
T KOG0472|consen 322 ---QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKS---------- 387 (565)
T ss_pred ---HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhh----------
Confidence 011222211 0011111100000 0 01134556677776 5666666532211111
Q ss_pred CCCccccCCCcceEEeccCCccccccccCccccccCC-cEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeecc
Q 046577 595 PLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSL-KRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSM 673 (878)
Q Consensus 595 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 673 (878)
.-....+++.|+..+.. ...+. +..+ +.+.++++.+..+|. .+..+++|..|+++ ++-+.++|..
T Consensus 388 --------~~Vt~VnfskNqL~elP-k~L~~--lkelvT~l~lsnn~isfv~~--~l~~l~kLt~L~L~-NN~Ln~LP~e 453 (565)
T KOG0472|consen 388 --------EIVTSVNFSKNQLCELP-KRLVE--LKELVTDLVLSNNKISFVPL--ELSQLQKLTFLDLS-NNLLNDLPEE 453 (565)
T ss_pred --------cceEEEecccchHhhhh-hhhHH--HHHHHHHHHhhcCccccchH--HHHhhhcceeeecc-cchhhhcchh
Confidence 11344555555543321 11100 1111 122224555555544 36666666666666 4445555332
Q ss_pred ccccccccccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCccc
Q 046577 674 EGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMH 753 (878)
Q Consensus 674 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~ 753 (878)
++.+..|+.|+|+.. .+..+|... -.+..|+.+-.++ +.+.++.|..+..+.+|.+|++.+ +.+..
T Consensus 454 -------~~~lv~Lq~LnlS~N-rFr~lP~~~----y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~ 519 (565)
T KOG0472|consen 454 -------MGSLVRLQTLNLSFN-RFRMLPECL----YELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQN-NDLQQ 519 (565)
T ss_pred -------hhhhhhhheeccccc-ccccchHHH----hhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCC-Cchhh
Confidence 335555666666654 233332211 1122333333333 666666555577778888888744 56777
Q ss_pred ccchhHHhhcccccEEEEccccc
Q 046577 754 LVTSSTAKTLVRLVSLGVYGCRA 776 (878)
Q Consensus 754 l~~~~~~~~l~~L~~L~i~~c~~ 776 (878)
+ |..++++++|++|+++++|.
T Consensus 520 I--Pp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 520 I--PPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred C--ChhhccccceeEEEecCCcc
Confidence 7 45677888888888888753
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.8e-29 Score=250.16 Aligned_cols=487 Identities=21% Similarity=0.216 Sum_probs=286.2
Q ss_pred CCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEE
Q 046577 229 PQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEIL 308 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 308 (878)
..+..+++++|.... +.++ ..++..|.+|++++|++..+|.+++.+..++.|+.+.|++.. +|+.++.+.+|+.|
T Consensus 45 v~l~~lils~N~l~~---l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV---LRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchhh---ccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhh
Confidence 457788899988765 5666 489999999999999999999999999999999999999998 99999999999999
Q ss_pred EcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCC
Q 046577 309 SFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWL 388 (878)
Q Consensus 309 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (878)
+.+++.+.++|++++.+..|..++..+|+ +.++|.+ ++++.+|..|++.+|... +.++..-.++.|
T Consensus 120 ~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~-~~~~~~l~~l~~~~n~l~------------~l~~~~i~m~~L 185 (565)
T KOG0472|consen 120 DCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPED-MVNLSKLSKLDLEGNKLK------------ALPENHIAMKRL 185 (565)
T ss_pred hccccceeecCchHHHHhhhhhhhccccc-cccCchH-HHHHHHHHHhhccccchh------------hCCHHHHHHHHH
Confidence 99999999999999999999999999998 9999988 899999999999988876 345555558899
Q ss_pred cEEEEEecCCCcCCchh-hhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCC
Q 046577 389 TTLEIDVKNESMLPAGF-LARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPA 467 (878)
Q Consensus 389 ~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 467 (878)
++|+...|-.+.+|..+ .+++|..++++.+.+..+.. |+ .+..|++|++..|.++.+ |.
T Consensus 186 ~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe-----------f~---gcs~L~Elh~g~N~i~~l------pa 245 (565)
T KOG0472|consen 186 KHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE-----------FP---GCSLLKELHVGENQIEML------PA 245 (565)
T ss_pred HhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC-----------CC---ccHHHHHHHhcccHHHhh------HH
Confidence 99999888888888877 55666666555555444321 11 455555555555544422 22
Q ss_pred cccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceecccccccccc
Q 046577 468 AVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRC 547 (878)
Q Consensus 468 ~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~ 547 (878)
.....++++..|++++ ++++.. | ..+..+.+|++|+++++. ++.++..-+. + .|+.|.+.+.| ++.
T Consensus 246 e~~~~L~~l~vLDLRd-Nklke~-P-de~clLrsL~rLDlSNN~-is~Lp~sLgn--------l-hL~~L~leGNP-lrT 311 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRD-NKLKEV-P-DEICLLRSLERLDLSNND-ISSLPYSLGN--------L-HLKFLALEGNP-LRT 311 (565)
T ss_pred HHhcccccceeeeccc-cccccC-c-hHHHHhhhhhhhcccCCc-cccCCccccc--------c-eeeehhhcCCc-hHH
Confidence 2222345555555555 555554 2 113445555555555555 4444433222 2 44444444421 111
Q ss_pred ccCCCCc----CCCCCccEEEEccCCCccchhhhhhccccCCCCCC-CCCCCCCCccccCCCcceEEeccCCcccccccc
Q 046577 548 LYPGMHT----PEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGI-PVQQPPLPLEKILPNLTELSLSGKDAKMILQAD 622 (878)
Q Consensus 548 ~~~~~~~----~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 622 (878)
+-..... .-+..|+. -..|..+.. -++...+. ...+..++....
T Consensus 312 iRr~ii~~gT~~vLKyLrs--~~~~dglS~--------se~~~e~~~t~~~~~~~~~~~--------------------- 360 (565)
T KOG0472|consen 312 IRREIISKGTQEVLKYLRS--KIKDDGLSQ--------SEGGTETAMTLPSESFPDIYA--------------------- 360 (565)
T ss_pred HHHHHHcccHHHHHHHHHH--hhccCCCCC--------CcccccccCCCCCCcccchhh---------------------
Confidence 1110000 00011110 000000000 00000000 000001111111
Q ss_pred CccccccCCcEEEEecCCCCccchhHHHHHcCC--CceEEEeccCccceeeccccccccccccccccceeeccccccccc
Q 046577 623 FPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHN--LEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQ 700 (878)
Q Consensus 623 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~--L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 700 (878)
..+.+.|+++....+.+|.+ ++..-.+ ....+++++ .+.++ |..+..+..+...-+.....+..
T Consensus 361 -----~i~tkiL~~s~~qlt~VPdE-Vfea~~~~~Vt~VnfskN-qL~el-------Pk~L~~lkelvT~l~lsnn~isf 426 (565)
T KOG0472|consen 361 -----IITTKILDVSDKQLTLVPDE-VFEAAKSEIVTSVNFSKN-QLCEL-------PKRLVELKELVTDLVLSNNKISF 426 (565)
T ss_pred -----hhhhhhhcccccccccCCHH-HHHHhhhcceEEEecccc-hHhhh-------hhhhHHHHHHHHHHHhhcCcccc
Confidence 23455555555556666665 4433321 444555532 33333 22233333333222222222222
Q ss_pred ccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHHhhcccccEEEEcccccccce
Q 046577 701 LCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLGVYGCRAMTEV 780 (878)
Q Consensus 701 l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~ 780 (878)
++.. +..+++|..|++++ +-+.++ |..++.+..|+.|+|+.+ ..+.+ |....-+..|+.+-+++ .++.++
T Consensus 427 v~~~----l~~l~kLt~L~L~N-N~Ln~L-P~e~~~lv~Lq~LnlS~N-rFr~l--P~~~y~lq~lEtllas~-nqi~~v 496 (565)
T KOG0472|consen 427 VPLE----LSQLQKLTFLDLSN-NLLNDL-PEEMGSLVRLQTLNLSFN-RFRML--PECLYELQTLETLLASN-NQIGSV 496 (565)
T ss_pred chHH----HHhhhcceeeeccc-chhhhc-chhhhhhhhhheeccccc-ccccc--hHHHhhHHHHHHHHhcc-cccccc
Confidence 2211 14456677777776 666666 555667777777777664 44544 23333333444444444 466666
Q ss_pred ecccccccccceeeeccccceecccCCCcceeeccCceeecCCcceeecccCC
Q 046577 781 VINDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFPSLQELGVICCP 833 (878)
Q Consensus 781 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 833 (878)
++.. ...+.+|++|++.+ ..++.+|.+.. ++++|++|+++|.|
T Consensus 497 d~~~-------l~nm~nL~tLDL~n-Ndlq~IPp~Lg--nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 497 DPSG-------LKNMRNLTTLDLQN-NDLQQIPPILG--NMTNLRHLELDGNP 539 (565)
T ss_pred ChHH-------hhhhhhcceeccCC-CchhhCChhhc--cccceeEEEecCCc
Confidence 6542 22367777777766 55777776543 67777777777754
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.7e-26 Score=239.31 Aligned_cols=391 Identities=17% Similarity=0.216 Sum_probs=292.8
Q ss_pred ccceEEEEeccccccCCCC----CCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCcc
Q 046577 207 KKCYAISIRYCCIHELPNA----LECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLK 282 (878)
Q Consensus 207 ~~~~~L~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~ 282 (878)
.+.+-++.+.+.+..+.+. .-.+..++|++++|.... +.-.+|.++++|+.+.+..|.++.+|...+...||+
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~---id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSH---IDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLE 128 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeecccccccc---CcHHHHhcCCcceeeeeccchhhhccccccccccee
Confidence 3455666666666554322 234567889999998765 777778999999999999999999998777778899
Q ss_pred EEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccC
Q 046577 283 TLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNC 361 (878)
Q Consensus 283 ~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 361 (878)
.|+|.+|.|.+.-.+.+..++.|+.|||+.|.++++|.. +.+-.++++|++++|. ++.+..+.|.++.+|-+|.++.|
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccC
Confidence 999999999887778889999999999999999988754 6666889999999998 88888888999999999999999
Q ss_pred cchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccc
Q 046577 362 SIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKV 441 (878)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 441 (878)
.+. --.+..+.++++|+.|++..|.+...... .|.
T Consensus 208 rit-----------tLp~r~Fk~L~~L~~LdLnrN~irive~l-------------------------------tFq--- 242 (873)
T KOG4194|consen 208 RIT-----------TLPQRSFKRLPKLESLDLNRNRIRIVEGL-------------------------------TFQ--- 242 (873)
T ss_pred ccc-----------ccCHHHhhhcchhhhhhccccceeeehhh-------------------------------hhc---
Confidence 887 23456778899999999987765322111 111
Q ss_pred cCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhccc
Q 046577 442 ALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENR 521 (878)
Q Consensus 442 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 521 (878)
.+++|+.|.+..|++..+.++.|- .+.+++.|+|.. ++++.+ ..+++-++..|+.|+++.+. ++.+.....
T Consensus 243 gL~Sl~nlklqrN~I~kL~DG~Fy------~l~kme~l~L~~-N~l~~v-n~g~lfgLt~L~~L~lS~Na-I~rih~d~W 313 (873)
T KOG4194|consen 243 GLPSLQNLKLQRNDISKLDDGAFY------GLEKMEHLNLET-NRLQAV-NEGWLFGLTSLEQLDLSYNA-IQRIHIDSW 313 (873)
T ss_pred CchhhhhhhhhhcCcccccCccee------eecccceeeccc-chhhhh-hcccccccchhhhhccchhh-hheeecchh
Confidence 577888888888877766555432 578888888887 677765 34567788889999998887 666543322
Q ss_pred CCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCcccc
Q 046577 522 ADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKI 601 (878)
Q Consensus 522 ~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (878)
. ..++|++|++++ ++++++..+.. ..+..|++|.+++ +.+..+..+ ....
T Consensus 314 s-------ftqkL~~LdLs~-N~i~~l~~~sf-~~L~~Le~LnLs~-Nsi~~l~e~--------------------af~~ 363 (873)
T KOG4194|consen 314 S-------FTQKLKELDLSS-NRITRLDEGSF-RVLSQLEELNLSH-NSIDHLAEG--------------------AFVG 363 (873)
T ss_pred h-------hcccceeEeccc-cccccCChhHH-HHHHHhhhhcccc-cchHHHHhh--------------------HHHH
Confidence 2 468899999988 77887766543 3367888888887 455555332 2256
Q ss_pred CCCcceEEeccCCccccccc-cCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeeccccccccc
Q 046577 602 LPNLTELSLSGKDAKMILQA-DFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKH 680 (878)
Q Consensus 602 l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 680 (878)
+.+|+.|++++|.+.....+ ..+...+++|++|.+.+|.+..+|.. .+..+++|++|++.++ -+.++. +..
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr-Afsgl~~LE~LdL~~N-aiaSIq------~nA 435 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR-AFSGLEALEHLDLGDN-AIASIQ------PNA 435 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh-hhccCcccceecCCCC-cceeec------ccc
Confidence 78999999999987644433 33445589999999999999999988 7899999999999854 455553 333
Q ss_pred cccccccceeeccc
Q 046577 681 VGKLATIKELELYR 694 (878)
Q Consensus 681 ~~~~~~L~~L~l~~ 694 (878)
+..+ .|++|.+..
T Consensus 436 Fe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 436 FEPM-ELKELVMNS 448 (873)
T ss_pred cccc-hhhhhhhcc
Confidence 4455 788887643
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-26 Score=240.17 Aligned_cols=377 Identities=18% Similarity=0.198 Sum_probs=300.0
Q ss_pred cccceEEEEeccccccCCCC--CCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCcc
Q 046577 206 LKKCYAISIRYCCIHELPNA--LECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLK 282 (878)
Q Consensus 206 ~~~~~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~ 282 (878)
+...+.|++++|.+..+... .++++|+.+.+..|.... +|... ....+|+.|+|.+|.|.++ .+++..++.||
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~---IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTR---IPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhh---ccccc-ccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 45678899999998877543 489999999999998876 88732 3455699999999999977 56788899999
Q ss_pred EEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccC
Q 046577 283 TLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNC 361 (878)
Q Consensus 283 ~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 361 (878)
.|||+.|.|+..--.+|..=.++++|+|++|+|+.+-.+ |..+.+|-.|.+++|+ ++.+|...|.+|++|+.|++..|
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhcccc
Confidence 999999999983335677778999999999999988554 8889999999999998 99999988999999999999999
Q ss_pred cchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchh--hhcccccccccccCcccccccccccccccccccc
Q 046577 362 SIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGF--LARKLERQVSQEESTTTYCSSEITLDTSTLLFNE 439 (878)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~ 439 (878)
.+. ....-.+..+++|+.|.+..|.+..+..++ .+.+++.+++..+++..+...++-
T Consensus 232 ~ir-----------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf---------- 290 (873)
T KOG4194|consen 232 RIR-----------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF---------- 290 (873)
T ss_pred cee-----------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc----------
Confidence 876 112345778899999999999998888877 788999999998988887776432
Q ss_pred cccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhc
Q 046577 440 KVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISE 519 (878)
Q Consensus 440 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 519 (878)
.++.|+.|+++.|.+..+. +..|-+ .++|+.|+|+. +.++.+ +++.+..+..|++|.++.+. +..+...
T Consensus 291 --gLt~L~~L~lS~NaI~rih----~d~Wsf--tqkL~~LdLs~-N~i~~l-~~~sf~~L~~Le~LnLs~Ns-i~~l~e~ 359 (873)
T KOG4194|consen 291 --GLTSLEQLDLSYNAIQRIH----IDSWSF--TQKLKELDLSS-NRITRL-DEGSFRVLSQLEELNLSHNS-IDHLAEG 359 (873)
T ss_pred --ccchhhhhccchhhhheee----cchhhh--cccceeEeccc-cccccC-ChhHHHHHHHhhhhcccccc-hHHHHhh
Confidence 5899999999999887652 234433 68999999999 888886 45668889999999999998 7777554
Q ss_pred ccCCCCCCcccCcccceeccccccccccccCCC---CcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCC
Q 046577 520 NRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGM---HTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPL 596 (878)
Q Consensus 520 ~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~---~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~ 596 (878)
.+. .+.+|++|++++ +.+. |..+. ....+++|++|.+.+ ++++++|..+
T Consensus 360 af~-------~lssL~~LdLr~-N~ls-~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krA------------------ 411 (873)
T KOG4194|consen 360 AFV-------GLSSLHKLDLRS-NELS-WCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRA------------------ 411 (873)
T ss_pred HHH-------HhhhhhhhcCcC-CeEE-EEEecchhhhccchhhhheeecC-ceeeecchhh------------------
Confidence 433 488999999998 3333 22211 223489999999999 7899887643
Q ss_pred CccccCCCcceEEeccCCccccccccCccccccCCcEEEE------ecCCCCccchhHHHHHc
Q 046577 597 PLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVI------AEDDSAGFPIWNVLERF 653 (878)
Q Consensus 597 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~l~~l 653 (878)
..++++|++|++.+|.+..+-+..|.. ..|++|.+ |.+.+..++.| +....
T Consensus 412 --fsgl~~LE~LdL~~NaiaSIq~nAFe~---m~Lk~Lv~nSssflCDCql~Wl~qW-l~~~~ 468 (873)
T KOG4194|consen 412 --FSGLEALEHLDLGDNAIASIQPNAFEP---MELKELVMNSSSFLCDCQLKWLAQW-LYRRK 468 (873)
T ss_pred --hccCcccceecCCCCcceeeccccccc---chhhhhhhcccceEEeccHHHHHHH-HHhcc
Confidence 267899999999999988877777765 26777766 66677777777 44433
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=3.5e-27 Score=257.79 Aligned_cols=418 Identities=19% Similarity=0.174 Sum_probs=230.9
Q ss_pred eccccccCCCCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccc
Q 046577 215 RYCCIHELPNAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRD 293 (878)
Q Consensus 215 ~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~ 293 (878)
+.+..+-||..+ ....+..|.+..|-... .|-++..+.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|..
T Consensus 6 s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~---~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~ 82 (1081)
T KOG0618|consen 6 SDEQLELIPEQILNNEALQILNLRRNSLLS---RPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS 82 (1081)
T ss_pred ccccCcccchhhccHHHHHhhhcccccccc---CchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhh
Confidence 333444444433 22224455555544322 34444455555666666666666666666666666666666666666
Q ss_pred cchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhh----
Q 046577 294 IDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVER---- 369 (878)
Q Consensus 294 ~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---- 369 (878)
.|.+++++.+|++|.|.+|.+..+|.++..+++|+.|+++.|. ...+|.- +..++.++.+..++|........
T Consensus 83 -vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik 159 (1081)
T KOG0618|consen 83 -VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIK 159 (1081)
T ss_pred -CchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcchhhhhhccccch
Confidence 6666666666666666666666666666666666666666665 5555544 45555555555554411000000
Q ss_pred ----hcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCC
Q 046577 370 ----ANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPN 445 (878)
Q Consensus 370 ----~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 445 (878)
........++.++..+++ .|+++.|... ...-..+.+|+.+....+.+..+.. .-++
T Consensus 160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~----------------~g~~ 220 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQLSELEI----------------SGPS 220 (1081)
T ss_pred hhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhhhhccchhhhhhhhcccceEEe----------------cCcc
Confidence 000011223344444444 5777766654 1111144555555554444444443 4578
Q ss_pred cceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCC
Q 046577 446 LEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQV 525 (878)
Q Consensus 446 L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 525 (878)
|+.|+...|.+....... .-.+|++++++. ++++.+ | .|++.+++|+.|....+. +..++.....
T Consensus 221 l~~L~a~~n~l~~~~~~p--------~p~nl~~~dis~-n~l~~l-p-~wi~~~~nle~l~~n~N~-l~~lp~ri~~--- 285 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVHP--------VPLNLQYLDISH-NNLSNL-P-EWIGACANLEALNANHNR-LVALPLRISR--- 285 (1081)
T ss_pred hheeeeccCcceeecccc--------ccccceeeecch-hhhhcc-h-HHHHhcccceEecccchh-HHhhHHHHhh---
Confidence 888888888555332221 136899999998 788887 3 789999999999999888 7777765543
Q ss_pred CCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhcccc----CCCCC--CCCCCCCCCcc
Q 046577 526 IPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNE----NDQLG--IPVQQPPLPLE 599 (878)
Q Consensus 526 ~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~----~~~~~--~~~~~~~~~~~ 599 (878)
..+|+.|.+.. ..++.++.. ...+.+|+.|++.. .+|..+|...+.... ..+.. .....+ ....
T Consensus 286 -----~~~L~~l~~~~-nel~yip~~--le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp-~~~e 355 (1081)
T KOG0618|consen 286 -----ITSLVSLSAAY-NELEYIPPF--LEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP-SYEE 355 (1081)
T ss_pred -----hhhHHHHHhhh-hhhhhCCCc--ccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccc-cccc
Confidence 67888888877 456655543 33478888898887 577777652111000 00000 000000 0111
Q ss_pred ccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeecccccccc
Q 046577 600 KILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEK 679 (878)
Q Consensus 600 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~ 679 (878)
...+.|+.|.+.+|......-. ....+.+|+.|++++|.+..+|.. .+.++..|++|+++|+ +++.++ .
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p--~l~~~~hLKVLhLsyNrL~~fpas-~~~kle~LeeL~LSGN-kL~~Lp-------~ 424 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFP--VLVNFKHLKVLHLSYNRLNSFPAS-KLRKLEELEELNLSGN-KLTTLP-------D 424 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchh--hhccccceeeeeecccccccCCHH-HHhchHHhHHHhcccc-hhhhhh-------H
Confidence 3345566666666654322111 122356666666666666666665 5666666666666643 454442 2
Q ss_pred ccccccccceeecc
Q 046577 680 HVGKLATIKELELY 693 (878)
Q Consensus 680 ~~~~~~~L~~L~l~ 693 (878)
.+..++.|+.|...
T Consensus 425 tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 425 TVANLGRLHTLRAH 438 (1081)
T ss_pred HHHhhhhhHHHhhc
Confidence 23345555555543
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.2e-23 Score=259.26 Aligned_cols=317 Identities=21% Similarity=0.308 Sum_probs=211.0
Q ss_pred CCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccC
Q 046577 443 LPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRA 522 (878)
Q Consensus 443 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~ 522 (878)
+.+|+.|++.++.++.+|.... .+++|+.|+|+++..++.++. ++.+++|+.|++++|..+..++....
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~-------~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~- 678 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVH-------SLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQ- 678 (1153)
T ss_pred ccCCcEEECcCccccccccccc-------cCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhh-
Confidence 5678888888887776654421 478888888888777776532 66788888888888887777765443
Q ss_pred CCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccC
Q 046577 523 DQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKIL 602 (878)
Q Consensus 523 ~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l 602 (878)
.+++|+.|++++|+.++.++.+. .+++|+.|.+++|..+..+| ...
T Consensus 679 -------~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p------------------------~~~ 724 (1153)
T PLN03210 679 -------YLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFP------------------------DIS 724 (1153)
T ss_pred -------ccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccc------------------------ccc
Confidence 37888888888888888776543 47788888888888777664 224
Q ss_pred CCcceEEeccCCccccccccCccccccCCcEEEEecCCC-------CccchhHHHHHcCCCceEEEeccCccceeecccc
Q 046577 603 PNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDS-------AGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEG 675 (878)
Q Consensus 603 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 675 (878)
++|+.|+++++.+..+ +..+ .+++|+.|.+++... ..++.. ....+++|+.|++++|+.+.++
T Consensus 725 ~nL~~L~L~~n~i~~l-P~~~---~l~~L~~L~l~~~~~~~l~~~~~~l~~~-~~~~~~sL~~L~Ls~n~~l~~l----- 794 (1153)
T PLN03210 725 TNISWLDLDETAIEEF-PSNL---RLENLDELILCEMKSEKLWERVQPLTPL-MTMLSPSLTRLFLSDIPSLVEL----- 794 (1153)
T ss_pred CCcCeeecCCCccccc-cccc---cccccccccccccchhhccccccccchh-hhhccccchheeCCCCCCcccc-----
Confidence 5677777777764332 2211 356677777743211 111111 1233567888888877766665
Q ss_pred ccccccccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCccccc
Q 046577 676 CLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLV 755 (878)
Q Consensus 676 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~ 755 (878)
|..++.+++|+.|+|++|++++.++.. ..+++|+.|++++|..+..+ |. ..++|+.|+++++ .++.+
T Consensus 795 --P~si~~L~~L~~L~Ls~C~~L~~LP~~-----~~L~sL~~L~Ls~c~~L~~~-p~---~~~nL~~L~Ls~n-~i~~i- 861 (1153)
T PLN03210 795 --PSSIQNLHKLEHLEIENCINLETLPTG-----INLESLESLDLSGCSRLRTF-PD---ISTNISDLNLSRT-GIEEV- 861 (1153)
T ss_pred --ChhhhCCCCCCEEECCCCCCcCeeCCC-----CCccccCEEECCCCCccccc-cc---cccccCEeECCCC-CCccC-
Confidence 344567778888888888777776643 24677888888888777766 44 2467778887664 56666
Q ss_pred chhHHhhcccccEEEEcccccccceecccccccccceeeeccccceecccCCCcceeeccCc-----------eeecCCc
Q 046577 756 TSSTAKTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANY-----------TFEFPSL 824 (878)
Q Consensus 756 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~-----------~~~l~~L 824 (878)
|..+..+++|+.|++++|++++.++..... +++|+.|++++|++|+.++.... ...+|+.
T Consensus 862 -P~si~~l~~L~~L~L~~C~~L~~l~~~~~~--------L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~ 932 (1153)
T PLN03210 862 -PWWIEKFSNLSFLDMNGCNNLQRVSLNISK--------LKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPST 932 (1153)
T ss_pred -hHHHhcCCCCCEEECCCCCCcCccCccccc--------ccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCch
Confidence 355677788888888888888777665544 67788888888887776543221 0123444
Q ss_pred ceeecccCCCcc
Q 046577 825 QELGVICCPKMK 836 (878)
Q Consensus 825 ~~L~i~~C~~l~ 836 (878)
..+.+.+|.++.
T Consensus 933 ~~l~f~nC~~L~ 944 (1153)
T PLN03210 933 VCINFINCFNLD 944 (1153)
T ss_pred hccccccccCCC
Confidence 556677777665
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=6e-26 Score=248.27 Aligned_cols=482 Identities=20% Similarity=0.176 Sum_probs=323.2
Q ss_pred EcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCC
Q 046577 235 CMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRS 313 (878)
Q Consensus 235 ~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~ 313 (878)
+.+.+.... ||..++..-. +..|++..|.+-..| +.+.+..+|+.|++++|.+.. .|..|..+.+|+.|+++.|
T Consensus 4 d~s~~~l~~---ip~~i~~~~~-~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 4 DASDEQLEL---IPEQILNNEA-LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRN 78 (1081)
T ss_pred ccccccCcc---cchhhccHHH-HHhhhccccccccCchHHhhheeeeEEeecccccccc-CCchhhhHHHHhhcccchh
Confidence 445555444 8887765444 899999999877655 334556679999999999988 9999999999999999999
Q ss_pred CCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEE
Q 046577 314 DTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEI 393 (878)
Q Consensus 314 ~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 393 (878)
.+..+|.+.+++.+|++|+|.+|. +...|.+ +..+++|+.|+++.|.+. ..+.-+..+..+..+..
T Consensus 79 ~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~-~~~lknl~~LdlS~N~f~------------~~Pl~i~~lt~~~~~~~ 144 (1081)
T KOG0618|consen 79 YIRSVPSSCSNMRNLQYLNLKNNR-LQSLPAS-ISELKNLQYLDLSFNHFG------------PIPLVIEVLTAEEELAA 144 (1081)
T ss_pred hHhhCchhhhhhhcchhheeccch-hhcCchh-HHhhhcccccccchhccC------------CCchhHHhhhHHHHHhh
Confidence 999999999999999999999998 8899988 899999999999999875 34444555566666666
Q ss_pred EecC-CCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcc-eeeeccccceeecccCCCCCcccc
Q 046577 394 DVKN-ESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLE-ALEISEINVDKIWHYNQIPAAVFP 471 (878)
Q Consensus 394 ~~~~-~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~ 471 (878)
++|. +..++.. .++.+.++.+.+...... ...+++ .|++..|.+..+ ...
T Consensus 145 s~N~~~~~lg~~----~ik~~~l~~n~l~~~~~~---------------~i~~l~~~ldLr~N~~~~~-dls-------- 196 (1081)
T KOG0618|consen 145 SNNEKIQRLGQT----SIKKLDLRLNVLGGSFLI---------------DIYNLTHQLDLRYNEMEVL-DLS-------- 196 (1081)
T ss_pred hcchhhhhhccc----cchhhhhhhhhcccchhc---------------chhhhheeeecccchhhhh-hhh--------
Confidence 6651 1111111 122222222222221111 122333 488888755521 111
Q ss_pred cccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccccCC
Q 046577 472 HFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPG 551 (878)
Q Consensus 472 ~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~ 551 (878)
.+++|+.|.... +.+..+ --.-++|+.|+.+.|+ +..+...+ ...+|++++++. .+++.++
T Consensus 197 ~~~~l~~l~c~r-n~ls~l-----~~~g~~l~~L~a~~n~-l~~~~~~p---------~p~nl~~~dis~-n~l~~lp-- 257 (1081)
T KOG0618|consen 197 NLANLEVLHCER-NQLSEL-----EISGPSLTALYADHNP-LTTLDVHP---------VPLNLQYLDISH-NNLSNLP-- 257 (1081)
T ss_pred hccchhhhhhhh-cccceE-----EecCcchheeeeccCc-ceeecccc---------ccccceeeecch-hhhhcch--
Confidence 467777777765 566554 2345888999998888 44332211 245888898888 6777776
Q ss_pred CCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCccccccccCccccccCC
Q 046577 552 MHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSL 631 (878)
Q Consensus 552 ~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 631 (878)
.+...+++|+.+.+.+ +.+..+|... ...++|+.|.+..|....+.+. ...+.+|
T Consensus 258 ~wi~~~~nle~l~~n~-N~l~~lp~ri---------------------~~~~~L~~l~~~~nel~yip~~---le~~~sL 312 (1081)
T KOG0618|consen 258 EWIGACANLEALNANH-NRLVALPLRI---------------------SRITSLVSLSAAYNELEYIPPF---LEGLKSL 312 (1081)
T ss_pred HHHHhcccceEecccc-hhHHhhHHHH---------------------hhhhhHHHHHhhhhhhhhCCCc---cccccee
Confidence 4456788888888887 5666665321 3456788888888775433221 1226789
Q ss_pred cEEEEecCCCCccchhHHHHHcCC-CceEEEeccCccceeeccccccccccccccccceeecccccccccccccCCCCCC
Q 046577 632 KRLVIAEDDSAGFPIWNVLERFHN-LEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGP 710 (878)
Q Consensus 632 ~~L~l~~~~~~~~~~~~~l~~l~~-L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~ 710 (878)
++|++..|.+..+|.. ++..... |+.|+.+ +..+...+...+ ..++.|+.|++.+.. | .+.-++...
T Consensus 313 ~tLdL~~N~L~~lp~~-~l~v~~~~l~~ln~s-~n~l~~lp~~~e------~~~~~Lq~LylanN~-L---td~c~p~l~ 380 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDN-FLAVLNASLNTLNVS-SNKLSTLPSYEE------NNHAALQELYLANNH-L---TDSCFPVLV 380 (1081)
T ss_pred eeeeehhccccccchH-HHhhhhHHHHHHhhh-hccccccccccc------hhhHHHHHHHHhcCc-c---cccchhhhc
Confidence 9999988888888886 5555554 7778877 666766653222 356778888776633 2 222233346
Q ss_pred cccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHHhhcccccEEEEcccccccceeccccccccc
Q 046577 711 IFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLGVYGCRAMTEVVINDKDGVEK 790 (878)
Q Consensus 711 ~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 790 (878)
++..|+.|+++. +.+.+++...+.++..|++|.++|+ +|+.++ .....++.|++|...++ .+..+|. ...
T Consensus 381 ~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp--~tva~~~~L~tL~ahsN-~l~~fPe-~~~---- 450 (1081)
T KOG0618|consen 381 NFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-KLTTLP--DTVANLGRLHTLRAHSN-QLLSFPE-LAQ---- 450 (1081)
T ss_pred cccceeeeeecc-cccccCCHHHHhchHHhHHHhcccc-hhhhhh--HHHHhhhhhHHHhhcCC-ceeechh-hhh----
Confidence 778888888888 7777774445677788888888774 788773 55667788888877664 6777773 322
Q ss_pred ceeeeccccceecccCCCcceeeccCceeecCCcceeecccCCCc
Q 046577 791 EEIVFRKLKTLELCDLDSLTSFCSANYTFEFPSLQELGVICCPKM 835 (878)
Q Consensus 791 ~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 835 (878)
++.|+.++++ |++|+.+...... ..|.|++|+++|.+.+
T Consensus 451 ----l~qL~~lDlS-~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 451 ----LPQLKVLDLS-CNNLSEVTLPEAL-PSPNLKYLDLSGNTRL 489 (1081)
T ss_pred ----cCcceEEecc-cchhhhhhhhhhC-CCcccceeeccCCccc
Confidence 7888888874 4777765543311 2258888888887754
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.2e-25 Score=234.29 Aligned_cols=366 Identities=17% Similarity=0.231 Sum_probs=251.4
Q ss_pred cccceEEEEeccccc--cCCCCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCcc
Q 046577 206 LKKCYAISIRYCCIH--ELPNAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLK 282 (878)
Q Consensus 206 ~~~~~~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~ 282 (878)
++-+|.+++++|++. .+|.+. .+++++.|.+....... +|+++ +.+.+|..|.+++|++.++...++.++.||
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~---vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ---VPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh---ChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 345677777777765 466665 67777887777666544 77774 777888888888888777777777778888
Q ss_pred EEEecCcccc--ccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEccc
Q 046577 283 TLCLDESILR--DIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCN 360 (878)
Q Consensus 283 ~L~l~~~~~~--~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~ 360 (878)
.+.++.|.+. + +|..|..|..|.+||+++|++.+.|..+.+-+++-.|++++|+ +..||...+.+|+.|-.|++++
T Consensus 82 sv~~R~N~LKnsG-iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSG-IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCC-CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc
Confidence 8888777543 4 7777888888888888888888888877777888888888877 7888877777777777778777
Q ss_pred CcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCccccccccccccccccccccc
Q 046577 361 CSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEK 440 (878)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~ 440 (878)
|.+. ..+..+..+.+|++|.+++|....+ ... .+
T Consensus 160 NrLe------------~LPPQ~RRL~~LqtL~Ls~NPL~hf----------------------QLr------------QL 193 (1255)
T KOG0444|consen 160 NRLE------------MLPPQIRRLSMLQTLKLSNNPLNHF----------------------QLR------------QL 193 (1255)
T ss_pred chhh------------hcCHHHHHHhhhhhhhcCCChhhHH----------------------HHh------------cC
Confidence 7664 3556666777777777777653221 111 11
Q ss_pred ccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcc
Q 046577 441 VALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISEN 520 (878)
Q Consensus 441 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~ 520 (878)
..+++|++|++++.+=+ ...+|++ + ..+.||..++++. +++..+ +..+-.+++|+.|+++++. ++++....
T Consensus 194 PsmtsL~vLhms~TqRT---l~N~Pts-l-d~l~NL~dvDlS~-N~Lp~v--Pecly~l~~LrrLNLS~N~-iteL~~~~ 264 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRT---LDNIPTS-L-DDLHNLRDVDLSE-NNLPIV--PECLYKLRNLRRLNLSGNK-ITELNMTE 264 (1255)
T ss_pred ccchhhhhhhcccccch---hhcCCCc-h-hhhhhhhhccccc-cCCCcc--hHHHhhhhhhheeccCcCc-eeeeeccH
Confidence 14778888888887222 1134433 2 2578999999987 777776 3447788999999999998 77765443
Q ss_pred cCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccc
Q 046577 521 RADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEK 600 (878)
Q Consensus 521 ~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (878)
.. ..+|++|+++. ++|+.++... ..++.|++|.+.+ ++|+ |+|+..+ -+
T Consensus 265 ~~--------W~~lEtLNlSr-NQLt~LP~av--cKL~kL~kLy~n~-NkL~---------FeGiPSG----------IG 313 (1255)
T KOG0444|consen 265 GE--------WENLETLNLSR-NQLTVLPDAV--CKLTKLTKLYANN-NKLT---------FEGIPSG----------IG 313 (1255)
T ss_pred HH--------Hhhhhhhcccc-chhccchHHH--hhhHHHHHHHhcc-Cccc---------ccCCccc----------hh
Confidence 33 67889999888 7777776542 3367777777766 3332 1111111 14
Q ss_pred cCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccc
Q 046577 601 ILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHE 668 (878)
Q Consensus 601 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 668 (878)
.+.+|+.+...+|... ..+..+ ..++.|+.|.+++|.+..+|.. +.-++.|+.|++..++++.
T Consensus 314 KL~~Levf~aanN~LE-lVPEgl--cRC~kL~kL~L~~NrLiTLPea--IHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 314 KLIQLEVFHAANNKLE-LVPEGL--CRCVKLQKLKLDHNRLITLPEA--IHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhhHHHHhhccccc-cCchhh--hhhHHHHHhcccccceeechhh--hhhcCCcceeeccCCcCcc
Confidence 5667777777766532 233333 2367788888888888888875 7778888888888877775
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=1.2e-25 Score=234.25 Aligned_cols=337 Identities=21% Similarity=0.264 Sum_probs=270.1
Q ss_pred eCCCCCCCCC-ccccccceEEEEeccccccCCCCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCC
Q 046577 193 ENEDVWELPD-KESLKKCYAISIRYCCIHELPNAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFS 270 (878)
Q Consensus 193 ~~~~~~~~~~-~~~~~~~~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~ 270 (878)
++..+..+|. ....+++.||++.+|++.++...+ +++.||++++..|..... .+|.++| +++.|.+||||+|++.+
T Consensus 40 nrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns-GiP~diF-~l~dLt~lDLShNqL~E 117 (1255)
T KOG0444|consen 40 NRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS-GIPTDIF-RLKDLTILDLSHNQLRE 117 (1255)
T ss_pred chhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC-CCCchhc-ccccceeeecchhhhhh
Confidence 3444445543 235678999999999988876654 899999999998877554 3999986 79999999999999999
Q ss_pred CccccccccCccEEEecCccccccchhh-hcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcC
Q 046577 271 LPSSIDLLVKLKTLCLDESILRDIDIAI-IGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISS 349 (878)
Q Consensus 271 lp~~~~~l~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~ 349 (878)
.|..+.+-+++-+|+|++|.|.. +|.. +-+|..|-+||+++|++..+|+.+.+|.+|++|++++|. +....-..+-.
T Consensus 118 vP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPs 195 (1255)
T KOG0444|consen 118 VPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPS 195 (1255)
T ss_pred cchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCcc
Confidence 99999999999999999999999 7765 568999999999999999999999999999999999997 44433222556
Q ss_pred CccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchh-hhcccccccccccCccccccccc
Q 046577 350 LIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGF-LARKLERQVSQEESTTTYCSSEI 428 (878)
Q Consensus 350 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~ 428 (878)
|++|+.|.+++.+.+. ...+.++..+.+|+.++++.|....+|..+ .+.+|..++++++.++.+....
T Consensus 196 mtsL~vLhms~TqRTl----------~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~- 264 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTL----------DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE- 264 (1255)
T ss_pred chhhhhhhcccccchh----------hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH-
Confidence 7888899988877652 335777888899999999999999999887 8899999999998888875521
Q ss_pred ccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEe
Q 046577 429 TLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIR 508 (878)
Q Consensus 429 ~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~ 508 (878)
+...+|++|+++.|.++.+ |..++ .+++|++|.+.+ ++++.-..++.++++.+|+++...
T Consensus 265 ------------~~W~~lEtLNlSrNQLt~L------P~avc-KL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 265 ------------GEWENLETLNLSRNQLTVL------PDAVC-KLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred ------------HHHhhhhhhccccchhccc------hHHHh-hhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhh
Confidence 1467899999999987743 33333 578899998887 666654445668999999999988
Q ss_pred CCchhHHHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhh
Q 046577 509 DCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAA 576 (878)
Q Consensus 509 ~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~ 576 (878)
++. ++-+|...+. +++|+.|.+.. +.|..++.+.. -+|.|+.|++.+.|+|.--|.
T Consensus 325 nN~-LElVPEglcR--------C~kL~kL~L~~-NrLiTLPeaIH--lL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 325 NNK-LELVPEGLCR--------CVKLQKLKLDH-NRLITLPEAIH--LLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred ccc-cccCchhhhh--------hHHHHHhcccc-cceeechhhhh--hcCCcceeeccCCcCccCCCC
Confidence 887 7766665443 88999999876 77888876644 378999999999998876554
No 14
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.76 E-value=4.2e-19 Score=187.20 Aligned_cols=131 Identities=31% Similarity=0.530 Sum_probs=104.9
Q ss_pred CccEEccCCChHHHHHHHHHhcCCC--CCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCC-chhHHHHHHHhcCCCCC
Q 046577 4 EDNFLINNLNEEEAGRLFKMMAGDD--VENRELKSTAIDVARACGGLPIALTTVAKALRGKS-LHEWKNSLRELRTPSMV 80 (878)
Q Consensus 4 ~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k~-~~~W~~~l~~l~~~~~~ 80 (878)
...|+|++|+++||++||++.|+.. ..++.+++++++|+++|+|+||||+++|++|+.+. ..+|+++++++......
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~ 228 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE 228 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5689999999999999999999532 34567788999999999999999999999996654 44599999987766221
Q ss_pred CcCCchhhHHHHHHHHHhcCCCchhHHHHHHhccCCCC--CChhHHHHHHhhcccccC
Q 046577 81 NFEGVSAETYSSIELSFKYLKGGQLKELFQLCSLMGNS--IPTLKLLKYSIGLGIFQG 136 (878)
Q Consensus 81 ~~~~~~~~i~~~L~lSy~~L~~~~lk~cFly~~~fp~~--i~~~~li~~w~~~g~~~~ 136 (878)
..+....+..++.+||+.||++ +|+||+|||+||++ |+++.++++|+++|+|+.
T Consensus 229 -~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 229 -SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp -SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred -cccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 2223466999999999999997 89999999999985 678999999999999974
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=7.9e-19 Score=174.98 Aligned_cols=392 Identities=19% Similarity=0.198 Sum_probs=233.1
Q ss_pred ccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecC-ccccccc
Q 046577 218 CIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDE-SILRDID 295 (878)
Q Consensus 218 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~-~~~~~~~ 295 (878)
.+.++|..+. .....+.+..|.+.. ||+.+|+.+++||+|||++|+|+.| |++|..+..|-.|-+.+ |+|+. +
T Consensus 57 GL~eVP~~LP-~~tveirLdqN~I~~---iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l 131 (498)
T KOG4237|consen 57 GLTEVPANLP-PETVEIRLDQNQISS---IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-L 131 (498)
T ss_pred CcccCcccCC-CcceEEEeccCCccc---CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-h
Confidence 3556666553 355677788888766 8999999999999999999999987 88999999887777776 88888 5
Q ss_pred h-hhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcc------hhHH
Q 046577 296 I-AIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSI------EWEV 367 (878)
Q Consensus 296 p-~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~------~~~~ 367 (878)
| ..|++|..|+.|.+.-|++.-++.. +..|++|+.|.+..|. +..++.+.+..+..++++.+..|.+ .|..
T Consensus 132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla 210 (498)
T KOG4237|consen 132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA 210 (498)
T ss_pred hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhh
Confidence 5 4688999999999998888866544 8889999999999988 8888887788899999887765542 2211
Q ss_pred hhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccc--cccccccccCCC
Q 046577 368 ERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTS--TLLFNEKVALPN 445 (878)
Q Consensus 368 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~--~~~l~~~~~~~~ 445 (878)
.+ ....+-+++..+......+.+..+...+.......++.+. +-.......+.. ...|. .+++
T Consensus 211 ~~-----~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~-------s~~~~~d~~d~~cP~~cf~---~L~~ 275 (498)
T KOG4237|consen 211 DD-----LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLP-------SRLSSEDFPDSICPAKCFK---KLPN 275 (498)
T ss_pred hH-----HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHH-------HhhccccCcCCcChHHHHh---hccc
Confidence 10 0011112222222221112122111111111111111110 000000000011 11233 6889
Q ss_pred cceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCC
Q 046577 446 LEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQV 525 (878)
Q Consensus 446 L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 525 (878)
|++|++++|.++.+....|. ....++.|.|.+ +++..+ ...++.++..|+.|++.++. |+.+....+.
T Consensus 276 L~~lnlsnN~i~~i~~~aFe------~~a~l~eL~L~~-N~l~~v-~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~--- 343 (498)
T KOG4237|consen 276 LRKLNLSNNKITRIEDGAFE------GAAELQELYLTR-NKLEFV-SSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQ--- 343 (498)
T ss_pred ceEeccCCCccchhhhhhhc------chhhhhhhhcCc-chHHHH-HHHhhhccccceeeeecCCe-eEEEeccccc---
Confidence 99999999988876555443 467888888888 777765 44667888889999998888 6665444333
Q ss_pred CCcccCcccceecccccc--------ccccccCCCCc------CCCCCccEEEEccCCCccchhhhhhccccCCCCCCCC
Q 046577 526 IPYFVFPQLTTLRLQDLP--------KLRCLYPGMHT------PEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPV 591 (878)
Q Consensus 526 ~~~~~~p~L~~L~l~~c~--------~L~~~~~~~~~------~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~ 591 (878)
...+|.+|.+-..| -+.+|...... +....++.+.|++- ..+.++..+.+...
T Consensus 344 ----~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv---------~~~~~~c~~~ee~~ 410 (498)
T KOG4237|consen 344 ----TLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDV---------AFGDFRCGGPEELG 410 (498)
T ss_pred ----ccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhc---------cccccccCCccccC
Confidence 35566777664321 12223221110 01112333333331 11223322333333
Q ss_pred CCCCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEecc
Q 046577 592 QQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNF 664 (878)
Q Consensus 592 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c 664 (878)
+.+.-..+..++.+.+..-.++.....++..+| ....+|++.+|.++.+|.. .+.+| .++++++
T Consensus 411 ~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP----~d~telyl~gn~~~~vp~~----~~~~l-~~dls~n 474 (498)
T KOG4237|consen 411 CLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP----VDVTELYLDGNAITSVPDE----LLRSL-LLDLSNN 474 (498)
T ss_pred CCCCCCCCCCcchhhhhHhhcccchhhcCCCCC----chhHHHhcccchhcccCHH----HHhhh-hcccccC
Confidence 333334445566666655555554444554444 3467788888888888875 45566 7777743
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.67 E-value=7.5e-18 Score=168.10 Aligned_cols=394 Identities=18% Similarity=0.234 Sum_probs=233.9
Q ss_pred EEeeCCCCCCCCCccccccceEEEEeccccccCCCCC--CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeC-C
Q 046577 190 FVVENEDVWELPDKESLKKCYAISIRYCCIHELPNAL--ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTG-M 266 (878)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~-~ 266 (878)
+..++.++.++|. +.+.....|.+..|.|+.+|+.. .+++||.|++++|.+.. |-+++|.+++.|-.|-+.+ |
T Consensus 51 VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~---I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF---IAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhh---cChHhhhhhHhhhHHHhhcCC
Confidence 3345556666654 34667889999999999999875 89999999999999877 8888899999998877776 8
Q ss_pred CCCCCcc-ccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccch-hhcCCCCccEEecCCCCCC-----
Q 046577 267 QLFSLPS-SIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPK-ALGQLTKLRLLDLTDCFHL----- 339 (878)
Q Consensus 267 ~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l----- 339 (878)
+|+++|+ .|++|..|+-|.+.-|.+.-...+.+..|++|..|.+..|.+..++. .+..+..++++.+..|..+
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 9999974 68999999999999999988778899999999999999999999987 5889999999988776511
Q ss_pred -------CccCcchhcCCccccEEEcccCcch----------hHHhh---hccc--CCCCChhhhcCCCCCcEEEEEecC
Q 046577 340 -------KVIAPNVISSLIRLEELYMCNCSIE----------WEVER---ANSK--RSNASLDELMHLRWLTTLEIDVKN 397 (878)
Q Consensus 340 -------~~~~~~~~~~l~~L~~L~l~~~~~~----------~~~~~---~~~~--~~~~~~~~l~~l~~L~~L~l~~~~ 397 (878)
...|.. ++......-..+.+..+. ++... .... ....-...+.++++|++|++++|.
T Consensus 207 ~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 207 PWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred chhhhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 111111 222221111111111110 00000 0000 111223457788888888888887
Q ss_pred CCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCcc
Q 046577 398 ESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLT 477 (878)
Q Consensus 398 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~ 477 (878)
++.+.... |+ ....+++|.+.+|++..+.... |..+.+|+
T Consensus 286 i~~i~~~a-------------------------------Fe---~~a~l~eL~L~~N~l~~v~~~~------f~~ls~L~ 325 (498)
T KOG4237|consen 286 ITRIEDGA-------------------------------FE---GAAELQELYLTRNKLEFVSSGM------FQGLSGLK 325 (498)
T ss_pred cchhhhhh-------------------------------hc---chhhhhhhhcCcchHHHHHHHh------hhccccce
Confidence 76665443 22 3445555555555444332222 22455555
Q ss_pred EEeeccccccccccchhhhcccCCcCEEEEeCCch--------hHHHhhcccCCCCCCcccCcccceecccccccccccc
Q 046577 478 RLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKD--------LQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLY 549 (878)
Q Consensus 478 ~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~--------l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~ 549 (878)
.|+|.+ ++++.+.| ..+..+.+|..|.+-.++. +.+|.......+..+-...-.++.+.+++.. ..++.
T Consensus 326 tL~L~~-N~it~~~~-~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~-~~~~~ 402 (498)
T KOG4237|consen 326 TLSLYD-NQITTVAP-GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVA-FGDFR 402 (498)
T ss_pred eeeecC-CeeEEEec-ccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhcc-ccccc
Confidence 555555 44554433 2244455555555543331 2222222111111222223356666666521 11111
Q ss_pred CC-----------CCcCCCCCccEEEEccCC--CccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCcc
Q 046577 550 PG-----------MHTPEWLALEMLFVYRCD--KLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAK 616 (878)
Q Consensus 550 ~~-----------~~~~~~~~L~~L~l~~C~--~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 616 (878)
.+ .-+..++.+.. +..|. .++.+|. .......++.+.+|.+.
T Consensus 403 c~~~ee~~~~~s~~cP~~c~c~~t--VvRcSnk~lk~lp~-----------------------~iP~d~telyl~gn~~~ 457 (498)
T KOG4237|consen 403 CGGPEELGCLTSSPCPPPCTCLDT--VVRCSNKLLKLLPR-----------------------GIPVDVTELYLDGNAIT 457 (498)
T ss_pred cCCccccCCCCCCCCCCCcchhhh--hHhhcccchhhcCC-----------------------CCCchhHHHhcccchhc
Confidence 11 01112223322 11221 2333331 11224567788888765
Q ss_pred ccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEec
Q 046577 617 MILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFN 663 (878)
Q Consensus 617 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 663 (878)
.+ |.+.+.+| .+++++|.+..+... .+.++++|.+|.|++
T Consensus 458 ~v-----p~~~~~~l-~~dls~n~i~~Lsn~-tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 458 SV-----PDELLRSL-LLDLSNNRISSLSNY-TFSNMTQLSTLILSY 497 (498)
T ss_pred cc-----CHHHHhhh-hcccccCceehhhcc-cccchhhhheeEEec
Confidence 43 33356777 778888888877776 677888888887764
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=5.8e-18 Score=149.13 Aligned_cols=168 Identities=25% Similarity=0.375 Sum_probs=141.5
Q ss_pred cccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhh
Q 046577 219 IHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAI 298 (878)
Q Consensus 219 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~ 298 (878)
+.+++.-+++++++.|.+++|.... +|+.+ ..+++|++|++++|++.++|.+++.++.||.|++.-|.+.. +|..
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~---vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~-lprg 97 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTV---VPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI-LPRG 97 (264)
T ss_pred HhhcccccchhhhhhhhcccCceee---cCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc-Cccc
Confidence 4555666677888888888888876 77775 78899999999999999999999999999999998888877 8999
Q ss_pred hcCCCCCCEEEcCCCCCc--ccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCC
Q 046577 299 IGKLENLEILSFVRSDTV--QLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSN 376 (878)
Q Consensus 299 i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 376 (878)
|+.++-|++||+.+|++. .+|..|..|+.|+.|.++.|. ..-+|++ ++++++||.|.+..|...
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------ 163 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------ 163 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------
Confidence 999999999999988765 678888888889999998887 8888887 899999999998887765
Q ss_pred CChhhhcCCCCCcEEEEEecCCCcCCchh
Q 046577 377 ASLDELMHLRWLTTLEIDVKNESMLPAGF 405 (878)
Q Consensus 377 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 405 (878)
..+.+++.++.|++|.+.+|..+.+|+.+
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence 46788888899999999998888887765
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=1.1e-14 Score=166.38 Aligned_cols=252 Identities=18% Similarity=0.154 Sum_probs=143.3
Q ss_pred eEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCc
Q 046577 210 YAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDES 289 (878)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~ 289 (878)
..|+++.+.+..+|..+. ++|+.|.+.+|.... +|. .+++|++|++++|+++.+|.. ..+|+.|++++|
T Consensus 204 ~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~---LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS---LPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred cEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCC---CCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 456666777777766553 467777777776554 553 246777777777777777643 346777777777
Q ss_pred cccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhh
Q 046577 290 ILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVER 369 (878)
Q Consensus 290 ~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 369 (878)
.+.. +|... .+|+.|++++|+++.+|.. +++|+.|++++|. +..+|.. . .+|+.|++++|.+.
T Consensus 273 ~L~~-Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~----- 335 (788)
T PRK15387 273 PLTH-LPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLT----- 335 (788)
T ss_pred chhh-hhhch---hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCccc-----
Confidence 7665 55432 4566777777777777652 4567777777775 6666542 2 34566666666554
Q ss_pred hcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCccee
Q 046577 370 ANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEAL 449 (878)
Q Consensus 370 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L 449 (878)
..+ .+ ..+|+.|++++|.+..+|.. .++|+.|
T Consensus 336 -------~LP-~l--p~~Lq~LdLS~N~Ls~LP~l--------------------------------------p~~L~~L 367 (788)
T PRK15387 336 -------SLP-TL--PSGLQELSVSDNQLASLPTL--------------------------------------PSELYKL 367 (788)
T ss_pred -------ccc-cc--ccccceEecCCCccCCCCCC--------------------------------------Cccccee
Confidence 011 11 13677777777666555432 2345555
Q ss_pred eeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcc
Q 046577 450 EISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYF 529 (878)
Q Consensus 450 ~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 529 (878)
++++|.++.+ |. ...+|+.|++++ +.++.+++ ..++|+.|++++|. ++.++.
T Consensus 368 ~Ls~N~L~~L-----P~-----l~~~L~~LdLs~-N~Lt~LP~-----l~s~L~~LdLS~N~-LssIP~----------- 419 (788)
T PRK15387 368 WAYNNRLTSL-----PA-----LPSGLKELIVSG-NRLTSLPV-----LPSELKELMVSGNR-LTSLPM----------- 419 (788)
T ss_pred hhhccccccC-----cc-----cccccceEEecC-CcccCCCC-----cccCCCEEEccCCc-CCCCCc-----------
Confidence 5555544421 11 123566666665 44554321 12456666666665 444332
Q ss_pred cCcccceeccccccccccccCCCCcCCCCCccEEEEccC
Q 046577 530 VFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRC 568 (878)
Q Consensus 530 ~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C 568 (878)
.+.+|+.|++++ ++++.++.. ...+++|+.|+++++
T Consensus 420 l~~~L~~L~Ls~-NqLt~LP~s--l~~L~~L~~LdLs~N 455 (788)
T PRK15387 420 LPSGLLSLSVYR-NQLTRLPES--LIHLSSETTVNLEGN 455 (788)
T ss_pred chhhhhhhhhcc-CcccccChH--HhhccCCCeEECCCC
Confidence 134566666665 455555432 223566666666664
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=2.2e-14 Score=164.04 Aligned_cols=252 Identities=19% Similarity=0.131 Sum_probs=175.3
Q ss_pred eEEeeCCCCCCCCCccccccceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCC
Q 046577 189 VFVVENEDVWELPDKESLKKCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQL 268 (878)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i 268 (878)
...+....+..+|. .....++.|.+.+|.++.+|.. .++|++|++++|.+.. +|. ..++|+.|++++|.+
T Consensus 205 ~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lts---LP~----lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 205 VLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTS---LPV----LPPGLLELSIFSNPL 274 (788)
T ss_pred EEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCc---ccC----cccccceeeccCCch
Confidence 33455556666665 2345789999999999998864 5799999999998765 774 247899999999999
Q ss_pred CCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhc
Q 046577 269 FSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVIS 348 (878)
Q Consensus 269 ~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~ 348 (878)
..+|... ..|+.|++++|.+.. +|.. +++|+.|++++|+++.+|... .+|+.|++++|. ++.+|.-
T Consensus 275 ~~Lp~lp---~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l--- 340 (788)
T PRK15387 275 THLPALP---SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL--- 340 (788)
T ss_pred hhhhhch---hhcCEEECcCCcccc-cccc---ccccceeECCCCccccCCCCc---ccccccccccCc-ccccccc---
Confidence 9888643 578899999999987 7763 478999999999999887633 457788899987 8888752
Q ss_pred CCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCccccccccc
Q 046577 349 SLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEI 428 (878)
Q Consensus 349 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~ 428 (878)
..+|+.|++++|.+. ..+ .+ ..+|+.|++++|....+|.. ..+|+.++++.+.+..+..
T Consensus 341 -p~~Lq~LdLS~N~Ls------------~LP-~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~--- 399 (788)
T PRK15387 341 -PSGLQELSVSDNQLA------------SLP-TL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPV--- 399 (788)
T ss_pred -ccccceEecCCCccC------------CCC-CC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCC---
Confidence 257999999999876 111 11 24788888888887766653 2355555555555543322
Q ss_pred ccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEe
Q 046577 429 TLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIR 508 (878)
Q Consensus 429 ~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~ 508 (878)
..++|+.|++++|.++.+ |. ...+|+.|++++ +.++.+ |. .+..+++|+.|+++
T Consensus 400 -------------l~s~L~~LdLS~N~LssI-----P~-----l~~~L~~L~Ls~-NqLt~L-P~-sl~~L~~L~~LdLs 453 (788)
T PRK15387 400 -------------LPSELKELMVSGNRLTSL-----PM-----LPSGLLSLSVYR-NQLTRL-PE-SLIHLSSETTVNLE 453 (788)
T ss_pred -------------cccCCCEEEccCCcCCCC-----Cc-----chhhhhhhhhcc-Cccccc-Ch-HHhhccCCCeEECC
Confidence 234566677777655532 21 134566666666 556654 22 25566677777776
Q ss_pred CCc
Q 046577 509 DCK 511 (878)
Q Consensus 509 ~~~ 511 (878)
+|+
T Consensus 454 ~N~ 456 (788)
T PRK15387 454 GNP 456 (788)
T ss_pred CCC
Confidence 666
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=7.1e-17 Score=142.32 Aligned_cols=158 Identities=23% Similarity=0.289 Sum_probs=140.1
Q ss_pred CCccccccceEEEEeccccccCCCCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCcccccccc
Q 046577 201 PDKESLKKCYAISIRYCCIHELPNAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLV 279 (878)
Q Consensus 201 ~~~~~~~~~~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~ 279 (878)
+..-....+.+|.+++|.+..+|.++ ++.+|++|.+.+|++.. +|.++ +.+++||.|+++-|++..+|..||.++
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~---lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE---LPTSI-SSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh---cChhh-hhchhhhheecchhhhhcCccccCCCc
Confidence 33334567888999999999999887 89999999999998865 88885 899999999999999999999999999
Q ss_pred CccEEEecCccccc-cchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEc
Q 046577 280 KLKTLCLDESILRD-IDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYM 358 (878)
Q Consensus 280 ~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 358 (878)
.|++||+++|.+.+ .+|..|..+..|+.|.++.|.++-+|..++++++|+.|.+..|. +-++|.+ ++.++.|++|.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhc
Confidence 99999999987654 58888888999999999999999999999999999999999998 7789988 899999999999
Q ss_pred ccCcch
Q 046577 359 CNCSIE 364 (878)
Q Consensus 359 ~~~~~~ 364 (878)
.+|...
T Consensus 181 qgnrl~ 186 (264)
T KOG0617|consen 181 QGNRLT 186 (264)
T ss_pred ccceee
Confidence 999876
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=1.6e-14 Score=166.50 Aligned_cols=180 Identities=18% Similarity=0.266 Sum_probs=120.5
Q ss_pred cceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEec
Q 046577 208 KCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLD 287 (878)
Q Consensus 208 ~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~ 287 (878)
+...|.++++.+..+|..+. ++++.|++++|.+.. +|..++ .+|++|++++|.++.+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~Lts---LP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP-EQITTLILDNNELKS---LPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCCc---CChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 45567777777777776542 578888888887664 777653 478888888888888876554 468888888
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHH
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEV 367 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 367 (878)
+|.+.. +|..+. .+|+.|++++|++..+|..+. .+|++|++++|. ++.+|.. +. ++|+.|++++|.+.
T Consensus 250 ~N~L~~-LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt--- 317 (754)
T PRK15370 250 INRITE-LPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT--- 317 (754)
T ss_pred CCccCc-CChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc---
Confidence 888776 777664 478888888888887777554 478888888876 7777754 32 46777777777664
Q ss_pred hhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCc
Q 046577 368 ERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEEST 420 (878)
Q Consensus 368 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l 420 (878)
..+..+ .++|+.|++++|....+|..+ .++|+.++++.+.+
T Consensus 318 ---------~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~L 358 (754)
T PRK15370 318 ---------ALPETL--PPGLKTLEAGENALTSLPASL-PPELQVLDVSKNQI 358 (754)
T ss_pred ---------cCCccc--cccceeccccCCccccCChhh-cCcccEEECCCCCC
Confidence 111112 257777888777766666543 13444444444333
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=4.5e-14 Score=162.73 Aligned_cols=246 Identities=18% Similarity=0.206 Sum_probs=143.0
Q ss_pred CccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEE
Q 046577 230 QLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILS 309 (878)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 309 (878)
+...|+++++.... +|..+ .++|+.|++++|.++.+|..+. .+|++|++++|.+.+ +|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~Lts---LP~~I---p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLTT---IPACI---PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcCc---CCccc---ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEE
Confidence 34566666655443 56543 2456777777777776666543 467777777776665 565443 3567777
Q ss_pred cCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCc
Q 046577 310 FVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLT 389 (878)
Q Consensus 310 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 389 (878)
+++|.+..+|..+. .+|+.|++++|. +..+|.. +. ++|+.|++++|.+. ..+..+. .+|+
T Consensus 248 Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l~--~sL~~L~Ls~N~Lt------------~LP~~lp--~sL~ 307 (754)
T PRK15370 248 LSINRITELPERLP--SALQSLDLFHNK-ISCLPEN-LP--EELRYLSVYDNSIR------------TLPAHLP--SGIT 307 (754)
T ss_pred CcCCccCcCChhHh--CCCCEEECcCCc-cCccccc-cC--CCCcEEECCCCccc------------cCcccch--hhHH
Confidence 77776666666543 366777776665 6666654 22 36666666666554 1111111 2455
Q ss_pred EEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcc
Q 046577 390 TLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAV 469 (878)
Q Consensus 390 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 469 (878)
.|++++|....+|.. ..++|+.|++++|.++.+ |..
T Consensus 308 ~L~Ls~N~Lt~LP~~-------------------------------------l~~sL~~L~Ls~N~Lt~L-----P~~-- 343 (754)
T PRK15370 308 HLNVQSNSLTALPET-------------------------------------LPPGLKTLEAGENALTSL-----PAS-- 343 (754)
T ss_pred HHHhcCCccccCCcc-------------------------------------ccccceeccccCCccccC-----Chh--
Confidence 555555544433322 245788888888766643 221
Q ss_pred cccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceecccccccccccc
Q 046577 470 FPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLY 549 (878)
Q Consensus 470 ~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~ 549 (878)
-.++|+.|++++| .++.+ |.. + .++|++|+|++|. +..++.. ..+.|+.|++++ ++++.++
T Consensus 344 --l~~sL~~L~Ls~N-~L~~L-P~~-l--p~~L~~LdLs~N~-Lt~LP~~----------l~~sL~~LdLs~-N~L~~LP 404 (754)
T PRK15370 344 --LPPELQVLDVSKN-QITVL-PET-L--PPTITTLDVSRNA-LTNLPEN----------LPAALQIMQASR-NNLVRLP 404 (754)
T ss_pred --hcCcccEEECCCC-CCCcC-Chh-h--cCCcCEEECCCCc-CCCCCHh----------HHHHHHHHhhcc-CCcccCc
Confidence 1357888888884 56654 322 2 3678888888886 6555442 134678888887 4566554
Q ss_pred CCC--CcCCCCCccEEEEccCC
Q 046577 550 PGM--HTPEWLALEMLFVYRCD 569 (878)
Q Consensus 550 ~~~--~~~~~~~L~~L~l~~C~ 569 (878)
... ....++++..|.+.+.+
T Consensus 405 ~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 405 ESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hhHHHHhhcCCCccEEEeeCCC
Confidence 321 12234677788887743
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.50 E-value=7.5e-14 Score=163.42 Aligned_cols=161 Identities=22% Similarity=0.271 Sum_probs=126.0
Q ss_pred cccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCC--CCCCcc-ccccccCccEEEecCccccccc
Q 046577 219 IHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQ--LFSLPS-SIDLLVKLKTLCLDESILRDID 295 (878)
Q Consensus 219 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~--i~~lp~-~~~~l~~L~~L~l~~~~~~~~~ 295 (878)
....|........|...+.++.... ++.+ ...+.|++|-+.++. +..++. .|..+++||+||+++|.-.+.+
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEH---IAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred ccccccccchhheeEEEEeccchhh---ccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 3445555566788888888877654 5554 356689999999986 566654 4788999999999998766669
Q ss_pred hhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCC
Q 046577 296 IAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRS 375 (878)
Q Consensus 296 p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 375 (878)
|..|++|.+||+|+++++.+..+|.++++|++|.+|++..+..+..+|. ....|++|++|.+...... .+
T Consensus 588 P~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~~~---------~~ 657 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSALS---------ND 657 (889)
T ss_pred ChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccccc---------cc
Confidence 9999999999999999999999999999999999999999886766654 3677999999998765421 22
Q ss_pred CCChhhhcCCCCCcEEEEE
Q 046577 376 NASLDELMHLRWLTTLEID 394 (878)
Q Consensus 376 ~~~~~~l~~l~~L~~L~l~ 394 (878)
.....++..+.+|+.+.+.
T Consensus 658 ~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 658 KLLLKELENLEHLENLSIT 676 (889)
T ss_pred hhhHHhhhcccchhhheee
Confidence 3456677777777777664
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.45 E-value=7.3e-16 Score=155.48 Aligned_cols=141 Identities=17% Similarity=0.160 Sum_probs=80.3
Q ss_pred CcccceeeEEeeccccccccc-CCCcccccCccEEEecCCCCcccccchhHHhhcccccEEEEcccccccceeccccccc
Q 046577 710 PIFQYLEILKVYHCQSLLILL-PSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLGVYGCRAMTEVVINDKDGV 788 (878)
Q Consensus 710 ~~~~~L~~L~l~~c~~l~~l~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 788 (878)
.++.+|+.|.++.|..+++.. .....+++.|+.+++.+|....+........++|.|+.|.+++|..+++--.- ..
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~---~l 393 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR---HL 393 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh---hh
Confidence 344666666666666655441 11133556677777777765554433344567777777777777665543000 00
Q ss_pred ccceeeeccccceecccCCCcceeeccCceeecCCcceeecccCCCccccCCCC--CCCCCceEEEee
Q 046577 789 EKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFPSLQELGVICCPKMKIFTTGE--SITPPGVYVWYG 854 (878)
Q Consensus 789 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp~~~--~~~p~L~~l~~~ 854 (878)
.........|..+.+.+||.+++-.... ...+++|+.+++.+|..+++=+... ..+|+++...+.
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~-l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEH-LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHH-HhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 1111225667788888888776555443 2367788888888887776533221 245665555444
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.30 E-value=1.1e-13 Score=139.95 Aligned_cols=296 Identities=19% Similarity=0.212 Sum_probs=147.2
Q ss_pred cccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccccCC
Q 046577 472 HFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPG 551 (878)
Q Consensus 472 ~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~ 551 (878)
.+|+++.|.+.+|.++++..-......++.|++|.+..|..+++........ .+|+|++|+++.|+.+++-...
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~------gC~kL~~lNlSwc~qi~~~gv~ 235 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE------GCRKLKYLNLSWCPQISGNGVQ 235 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH------hhhhHHHhhhccCchhhcCcch
Confidence 4666777777777666665444444566667777777666666554432111 3666666666666665552222
Q ss_pred CCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCccccccccCccccccCC
Q 046577 552 MHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSL 631 (878)
Q Consensus 552 ~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 631 (878)
.....+..++++...+|..+..-.. .......+.+..+++..|
T Consensus 236 ~~~rG~~~l~~~~~kGC~e~~le~l-------------------~~~~~~~~~i~~lnl~~c------------------ 278 (483)
T KOG4341|consen 236 ALQRGCKELEKLSLKGCLELELEAL-------------------LKAAAYCLEILKLNLQHC------------------ 278 (483)
T ss_pred HHhccchhhhhhhhcccccccHHHH-------------------HHHhccChHhhccchhhh------------------
Confidence 2223334444444444443321100 001122333333343344
Q ss_pred cEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeeccccccccccccccccceeecccccccccccccCCCCCCc
Q 046577 632 KRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPI 711 (878)
Q Consensus 632 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~ 711 (878)
+.++....|.+-..+..|+.|..++|..+++..-.. --+...+|+.|.++.|..++....... ..+
T Consensus 279 -------~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a-----Lg~~~~~L~~l~l~~c~~fsd~~ft~l--~rn 344 (483)
T KOG4341|consen 279 -------NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA-----LGQHCHNLQVLELSGCQQFSDRGFTML--GRN 344 (483)
T ss_pred -------ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH-----HhcCCCceEEEeccccchhhhhhhhhh--hcC
Confidence 333333333233345555666666555544321110 012345566666666655443221111 145
Q ss_pred ccceeeEEeecccccccc-cCCCcccccCccEEEecCCCCcccccc---hhHHhhcccccEEEEcccccccceecccccc
Q 046577 712 FQYLEILKVYHCQSLLIL-LPSSSVSFGNLTKLVASGCKELMHLVT---SSTAKTLVRLVSLGVYGCRAMTEVVINDKDG 787 (878)
Q Consensus 712 ~~~L~~L~l~~c~~l~~l-~~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 787 (878)
++.|+.+++.+|-..++- +-....+++.|+.|.++.|..+++... .....+...|+.+.+++||.+++-....
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~--- 421 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH--- 421 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH---
Confidence 566666666666554433 122234566666666666665554311 1112344567777777777665443222
Q ss_pred cccceeeeccccceecccCCCcceeeccCceeecCCcceeeccc
Q 046577 788 VEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFPSLQELGVIC 831 (878)
Q Consensus 788 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~ 831 (878)
+...++|+.+++.+|...+.-+......++|+++......
T Consensus 422 ----l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 422 ----LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred ----HhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 2235677777777777776665554444666665554443
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=2.4e-12 Score=138.28 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=6.9
Q ss_pred ccCCcCEEEEeCCc
Q 046577 498 SLKQLQHLDIRDCK 511 (878)
Q Consensus 498 ~l~~L~~L~l~~~~ 511 (878)
.+++|+++++++|.
T Consensus 276 ~~~~L~~l~l~~N~ 289 (319)
T cd00116 276 EKESLLELDLRGNK 289 (319)
T ss_pred cCCCccEEECCCCC
Confidence 33455555555544
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.26 E-value=3.2e-12 Score=137.41 Aligned_cols=140 Identities=22% Similarity=0.164 Sum_probs=86.0
Q ss_pred hhhhCCCCCcEEEeeCCCCC-----CCccccccccCccEEEecCccccc------cchhhhcCCCCCCEEEcCCCCCc-c
Q 046577 250 NFFVGMRKLKVVDFTGMQLF-----SLPSSIDLLVKLKTLCLDESILRD------IDIAIIGKLENLEILSFVRSDTV-Q 317 (878)
Q Consensus 250 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~------~~p~~i~~L~~L~~L~l~~~~l~-~ 317 (878)
.+|..+..|++|+++++.++ .++..+...+.|++|+++++.+.+ .++..+.++.+|+.|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 33566777888888888774 355566666778888887776551 23455667778888888777665 3
Q ss_pred cchhhcCCCC---ccEEecCCCCCCCc-----cCcchhcCC-ccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCC
Q 046577 318 LPKALGQLTK---LRLLDLTDCFHLKV-----IAPNVISSL-IRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWL 388 (878)
Q Consensus 318 lp~~i~~L~~---L~~L~l~~~~~l~~-----~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (878)
.+..+..+.+ |++|++++|. +.. +... +..+ ++|++|++++|.+..... ......+..+++|
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~-------~~~~~~~~~~~~L 167 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASC-------EALAKALRANRDL 167 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHH-------HHHHHHHHhCCCc
Confidence 3444444444 7778777776 432 1112 4455 677777777776652111 1223445566677
Q ss_pred cEEEEEecCC
Q 046577 389 TTLEIDVKNE 398 (878)
Q Consensus 389 ~~L~l~~~~~ 398 (878)
++|+++++..
T Consensus 168 ~~L~l~~n~l 177 (319)
T cd00116 168 KELNLANNGI 177 (319)
T ss_pred CEEECcCCCC
Confidence 7777766653
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.08 E-value=6.3e-12 Score=132.02 Aligned_cols=177 Identities=25% Similarity=0.298 Sum_probs=131.1
Q ss_pred cceEEEEeccccccCCCCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEe
Q 046577 208 KCYAISIRYCCIHELPNAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCL 286 (878)
Q Consensus 208 ~~~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l 286 (878)
.....+++.|.+.++|... .+-.|..+.++.|.+.. +|..+ .++..|.+|||+.|+++.+|..++.|+ |++|-+
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~---ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT---IPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcccee---cchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 3455667777777777665 56677777777776655 66664 677888888888888888887777664 788888
Q ss_pred cCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhH
Q 046577 287 DESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWE 366 (878)
Q Consensus 287 ~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 366 (878)
++|++.. +|..|+.+..|..||.+.|.+..+|..++.+.+|+.|++..|+ +..+|.+ +..| .|..|+++.|++.
T Consensus 151 sNNkl~~-lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis-- 224 (722)
T KOG0532|consen 151 SNNKLTS-LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS-- 224 (722)
T ss_pred ecCcccc-CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee--
Confidence 8888777 7888887778888888888888888888888888888888777 7777776 5533 4777888777765
Q ss_pred HhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchh
Q 046577 367 VERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGF 405 (878)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 405 (878)
..+..+.+|++|++|.|.+|....-|..+
T Consensus 225 ----------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 ----------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ----------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 45677778888888888877776666555
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.05 E-value=8.6e-12 Score=131.05 Aligned_cols=147 Identities=25% Similarity=0.348 Sum_probs=85.3
Q ss_pred ceEEEEeccccccCCCCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEec
Q 046577 209 CYAISIRYCCIHELPNAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLD 287 (878)
Q Consensus 209 ~~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~ 287 (878)
+..+.+..|.+..+|..+ .+..|..|+++.|+... +|..++ .--|++|-+++|+++.+|+.++.+.+|..||.+
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~---lp~~lC--~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH---LPDGLC--DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccchhhc---CChhhh--cCcceeEEEecCccccCCcccccchhHHHhhhh
Confidence 334444455555555554 55556666666665544 555542 234566666666666666666655666666666
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcch
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
.|.+.. +|..++.+..|+.|+++.|++..+|+++..| .|..||++.|+ +..+|.. |.+|+.||+|.+.+|.+.
T Consensus 175 ~nei~s-lpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iPv~-fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 175 KNEIQS-LPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhh-chHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecchh-hhhhhhheeeeeccCCCC
Confidence 666655 6666666666666666666666666665533 35566666655 6666655 566666666666665554
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.1e-09 Score=102.84 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=24.6
Q ss_pred CCCCCcEEEeeCCCCCCCccccc-cccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhh-cCCCCccEE
Q 046577 254 GMRKLKVVDFTGMQLFSLPSSID-LLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKAL-GQLTKLRLL 331 (878)
Q Consensus 254 ~l~~Lr~L~L~~~~i~~lp~~~~-~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L 331 (878)
+..++|.|+|+++.|+.+. .++ .+.+|+.|++++|.+.. + +.+..+++|++|++++|+++.++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 3334455555555554442 233 34455555555555543 2 23444555555555555555554333 235555555
Q ss_pred ecCCCCCCCccCc-chhcCCccccEEEcccCcch
Q 046577 332 DLTDCFHLKVIAP-NVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 332 ~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~ 364 (878)
++++|. +..+.. ..++.+++|+.|++.+|.+.
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeeccCCccc
Confidence 555554 333221 11444555555555555443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.8e-09 Score=101.32 Aligned_cols=132 Identities=27% Similarity=0.246 Sum_probs=41.9
Q ss_pred cccCCCCCCCCCccEEEcCCCCCccccCcChhhhh-CCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchh
Q 046577 219 IHELPNALECPQLEFLCMSPEDSSLEVSIPENFFV-GMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIA 297 (878)
Q Consensus 219 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~-~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~ 297 (878)
+++++....+.++|.|++.+|.+.. +. . ++ .+.+|++|++++|.|+.++ .+..+++|++|++++|.+.. +.+
T Consensus 9 i~~~~~~~n~~~~~~L~L~~n~I~~---Ie-~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~-i~~ 81 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNLRGNQIST---IE-N-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISS-ISE 81 (175)
T ss_dssp -------------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S--CH
T ss_pred ccccccccccccccccccccccccc---cc-c-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCc-ccc
Confidence 3444444445556666666665543 32 1 23 4566777777777777665 36667777777777777776 443
Q ss_pred hh-cCCCCCCEEEcCCCCCcccc--hhhcCCCCccEEecCCCCCCCccCc---chhcCCccccEEEc
Q 046577 298 II-GKLENLEILSFVRSDTVQLP--KALGQLTKLRLLDLTDCFHLKVIAP---NVISSLIRLEELYM 358 (878)
Q Consensus 298 ~i-~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~~~---~~~~~l~~L~~L~l 358 (878)
.+ ..+++|++|++++|++..+- ..+..+++|++|++.+|. +...+. .++..+++|+.|+-
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 34 35677777777777665432 335667777777777776 443332 24567777777764
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.5e-09 Score=109.45 Aligned_cols=63 Identities=16% Similarity=0.278 Sum_probs=29.4
Q ss_pred hCCCCCcEEEeeCCCCCCCc--cccccccCccEEEecCccccc--cchhhhcCCCCCCEEEcCCCCC
Q 046577 253 VGMRKLKVVDFTGMQLFSLP--SSIDLLVKLKTLCLDESILRD--IDIAIIGKLENLEILSFVRSDT 315 (878)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~l~~~~l 315 (878)
+++++||...|.++.+...+ +....|++++.|||+.|-+.. ...+....|++|+.|+++.|++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence 34555555555555554443 234455555555555553332 0122233444444444444443
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=5.5e-09 Score=115.56 Aligned_cols=176 Identities=24% Similarity=0.280 Sum_probs=126.0
Q ss_pred ccceEEEEeccccccCCCCCCCC--CccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEE
Q 046577 207 KKCYAISIRYCCIHELPNALECP--QLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTL 284 (878)
Q Consensus 207 ~~~~~L~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L 284 (878)
..+..+++.++.+.+++...... +|+.|++++|.... +|.. ...++.|+.|++++|++..+|...+.+..|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~---l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES---LPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhh---hhhh-hhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 45677777777777777766443 78888888777654 5433 467888888888888888887766677788888
Q ss_pred EecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcch
Q 046577 285 CLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 285 ~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
++++|.+.. +|..++.+.+|++|.+++|.+.+.+..+.++.++..+.+.++. +..++.. ++.+++++.|++++|.+.
T Consensus 192 ~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCcccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc
Confidence 888888777 7777777777888888887666666777777777777777666 5554444 677777888888777765
Q ss_pred hHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCC
Q 046577 365 WEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLP 402 (878)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 402 (878)
.+..++.+.+++.|+++++.....+
T Consensus 269 -------------~i~~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 269 -------------SISSLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred -------------ccccccccCccCEEeccCccccccc
Confidence 2333677778888888777654433
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=1.4e-09 Score=105.41 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=109.5
Q ss_pred CCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecC
Q 046577 255 MRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLT 334 (878)
Q Consensus 255 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 334 (878)
.+.|..|||++|.|+.+.+++.-.+.+|.|+++.|.+.. ...+..|++|+.||+++|.++++-.+-.+|-+.++|.++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 467889999999999988888888999999999999885 345888999999999999888776666778888999999
Q ss_pred CCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCc
Q 046577 335 DCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPA 403 (878)
Q Consensus 335 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (878)
+|. +.++.. ++++-+|..|++++|++.-- .....+++++.|+.|.+.+|....++.
T Consensus 361 ~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie~l----------deV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 361 QNK-IETLSG--LRKLYSLVNLDLSSNQIEEL----------DEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhh-Hhhhhh--hHhhhhheeccccccchhhH----------HHhcccccccHHHHHhhcCCCccccch
Confidence 987 777765 78888999999999887621 235677888889988888888765554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=1.5e-09 Score=105.18 Aligned_cols=129 Identities=22% Similarity=0.235 Sum_probs=110.3
Q ss_pred CCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCE
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEI 307 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 307 (878)
...|+.+++++|.+.. +.++. .-.+.+|+|++++|.+..+.. +..+++|+.||+++|.+.+ +..+-.+|-|.++
T Consensus 283 Wq~LtelDLS~N~I~~---iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQ---IDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKT 356 (490)
T ss_pred Hhhhhhccccccchhh---hhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHh-hhhhHhhhcCEee
Confidence 5568899999998765 66664 778999999999999987764 8889999999999999887 7777788999999
Q ss_pred EEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCc-chhcCCccccEEEcccCcch
Q 046577 308 LSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAP-NVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 308 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~ 364 (878)
|.+++|.++.+ .++++|.+|..||+++|+ +..+.. ..+++++.|+++.+.+|.+.
T Consensus 357 L~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 99999999888 578999999999999998 766542 22899999999999999875
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.72 E-value=1e-08 Score=113.48 Aligned_cols=127 Identities=27% Similarity=0.325 Sum_probs=60.5
Q ss_pred CCccEEEcCCCCCccccCcChhhhhCCC-CCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCE
Q 046577 229 PQLEFLCMSPEDSSLEVSIPENFFVGMR-KLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEI 307 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~-~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 307 (878)
+.++.|.+.++.... ++... ..+. +|+.|++++|++..+|..++.+++|+.|++++|.+.. +|...+.+.+|+.
T Consensus 116 ~~l~~L~l~~n~i~~---i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~ 190 (394)
T COG4886 116 TNLTSLDLDNNNITD---IPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNN 190 (394)
T ss_pred cceeEEecCCccccc---Ccccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhh
Confidence 445555555544433 44332 2232 4555555555555554445555555555555555554 4444445555555
Q ss_pred EEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCc
Q 046577 308 LSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCS 362 (878)
Q Consensus 308 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 362 (878)
|++++|++..+|..++.+..|++|.+++|. +...+.. +.+++++..|.+.++.
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNK 243 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCce
Confidence 555555555555544444445555555553 2222222 4444555544444443
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.8e-09 Score=103.53 Aligned_cols=168 Identities=18% Similarity=0.164 Sum_probs=94.4
Q ss_pred HHHHcCCCceEEEeccCccceeeccccccccccccccccceeecccccccccccccCCCCCCcccceeeEEeeccccccc
Q 046577 649 VLERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLI 728 (878)
Q Consensus 649 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~ 728 (878)
++..|.+|+.|.|.+..--..+ ...+....+|+.|+|+.|..++....... ...|++|..|+|+.|-..++
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I-------~~~iAkN~~L~~lnlsm~sG~t~n~~~ll--~~scs~L~~LNlsWc~l~~~ 275 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPI-------VNTIAKNSNLVRLNLSMCSGFTENALQLL--LSSCSRLDELNLSWCFLFTE 275 (419)
T ss_pred HHHHHHhhhhccccccccCcHH-------HHHHhccccceeeccccccccchhHHHHH--HHhhhhHhhcCchHhhccch
Confidence 4566666666666643211111 12234455666666666666554322111 14567777777777765554
Q ss_pred ccCCCcc-cccCccEEEecCCCC-cccccchhHHhhcccccEEEEcccccccceecccccccccceeeeccccceecccC
Q 046577 729 LLPSSSV-SFGNLTKLVASGCKE-LMHLVTSSTAKTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDL 806 (878)
Q Consensus 729 l~~~~~~-~l~~L~~L~l~~c~~-l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c 806 (878)
.....+. --++|+.|+|+||.+ +..-........+|+|.+|++++|..++.-.... +-.|+.|++|.++.|
T Consensus 276 ~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-------~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 276 KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-------FFKFNYLQHLSLSRC 348 (419)
T ss_pred hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-------HHhcchheeeehhhh
Confidence 4222122 234688888888763 3332224455678888888888887665422111 223788888888888
Q ss_pred CCcceeeccCceeecCCcceeecccCC
Q 046577 807 DSLTSFCSANYTFEFPSLQELGVICCP 833 (878)
Q Consensus 807 ~~L~~l~~~~~~~~l~~L~~L~i~~C~ 833 (878)
..+---... .....|+|.+|++.||-
T Consensus 349 Y~i~p~~~~-~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 349 YDIIPETLL-ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCCChHHee-eeccCcceEEEEecccc
Confidence 765210000 11256888888888873
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.2e-08 Score=102.77 Aligned_cols=204 Identities=21% Similarity=0.134 Sum_probs=125.7
Q ss_pred ccccceEEEEeccccccCCC--CC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccc--ccccc
Q 046577 205 SLKKCYAISIRYCCIHELPN--AL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSS--IDLLV 279 (878)
Q Consensus 205 ~~~~~~~L~l~~~~~~~l~~--~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~--~~~l~ 279 (878)
.++++|.++++++.+...+. .. .|+++|.|++++|-...-- .-..+...+++|+.|+|+.|.+....++ -..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~-~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF-PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH-HHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35677888888877766653 22 6888888888887432200 1124456788889999988877643221 23567
Q ss_pred CccEEEecCccccccchh-hhcCCCCCCEEEcCCCC-CcccchhhcCCCCccEEecCCCCCCCccC-cchhcCCccccEE
Q 046577 280 KLKTLCLDESILRDIDIA-IIGKLENLEILSFVRSD-TVQLPKALGQLTKLRLLDLTDCFHLKVIA-PNVISSLIRLEEL 356 (878)
Q Consensus 280 ~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L 356 (878)
+|+.|.+++|.++..... ....+++|+.|++.+|. +..-......+..|+.|+|++|. +...+ ....+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhh
Confidence 888888888887642222 23467888888888883 22222234556778888888887 44444 1226778888888
Q ss_pred EcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchh---hhcccccccc
Q 046577 357 YMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGF---LARKLERQVS 415 (878)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~l~l 415 (878)
+++.|.+.-- ...+.........+++|++|++..|.+...+.-- .+++|..+.+
T Consensus 277 nls~tgi~si-----~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 277 NLSSTGIASI-----AEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred hccccCcchh-----cCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 8887766510 1111222333455678888888887764433221 4445555544
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.49 E-value=6.3e-08 Score=96.82 Aligned_cols=172 Identities=15% Similarity=0.082 Sum_probs=86.5
Q ss_pred hcCCCCCCEEEcCCCCCc-ccch----hhcCCCCccEEecCCCCCCCccCcch-------------hcCCccccEEEccc
Q 046577 299 IGKLENLEILSFVRSDTV-QLPK----ALGQLTKLRLLDLTDCFHLKVIAPNV-------------ISSLIRLEELYMCN 360 (878)
Q Consensus 299 i~~L~~L~~L~l~~~~l~-~lp~----~i~~L~~L~~L~l~~~~~l~~~~~~~-------------~~~l~~L~~L~l~~ 360 (878)
+-..++|++||||.|-+. .-++ -+...+.|++|.+.+|. +.....+. ++.-++|+++....
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 334456666666666443 2222 24556677777777765 43322221 23345677777666
Q ss_pred CcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCccccccccccccccccccccc
Q 046577 361 CSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEK 440 (878)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~ 440 (878)
|...- .........+...+.|+.+.+..|++..--..+ ...++
T Consensus 167 Nrlen-------~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~a------------------------------l~eal 209 (382)
T KOG1909|consen 167 NRLEN-------GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTA------------------------------LAEAL 209 (382)
T ss_pred ccccc-------ccHHHHHHHHHhccccceEEEecccccCchhHH------------------------------HHHHH
Confidence 66541 111223344555667777777666542111111 11122
Q ss_pred ccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccch----hhhcccCCcCEEEEeCCc
Q 046577 441 VALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSA----SMIGSLKQLQHLDIRDCK 511 (878)
Q Consensus 441 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~----~~l~~l~~L~~L~l~~~~ 511 (878)
..+++|++|++.+|-++......+. -..+.+++|+.|++.+|.. ++-... ..-...|+|++|.+.+|.
T Consensus 210 ~~~~~LevLdl~DNtft~egs~~La--kaL~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 210 EHCPHLEVLDLRDNTFTLEGSVALA--KALSSWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HhCCcceeeecccchhhhHHHHHHH--HHhcccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcch
Confidence 2578888888888755432111110 0011356777777777642 221111 112346777777777776
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.6e-09 Score=100.51 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=24.4
Q ss_pred ccEEEecCcccccc-chhhhcCCCCCCEEEcCCCCCc-ccchhhcCCCCccEEecCCCCCC
Q 046577 281 LKTLCLDESILRDI-DIAIIGKLENLEILSFVRSDTV-QLPKALGQLTKLRLLDLTDCFHL 339 (878)
Q Consensus 281 L~~L~l~~~~~~~~-~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l 339 (878)
|++|||+...++.. +-..+..+.+|+.|.+.+.++. .+-..+.+=.+|+.|+++.|.++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc
Confidence 45555555444321 1222333444444444444443 22223344444444444444433
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=5e-07 Score=104.58 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=77.2
Q ss_pred CCcEEEeeCCCCC-CCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCc-ccchhhcCCCCccEEecC
Q 046577 257 KLKVVDFTGMQLF-SLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTV-QLPKALGQLTKLRLLDLT 334 (878)
Q Consensus 257 ~Lr~L~L~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~ 334 (878)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+.+.+|..++.+.+|+.|++++|++. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3667777777776 56777778888888888888777667777888888888888888776 677778888888888888
Q ss_pred CCCCCCccCcchhcC-CccccEEEcccCcch
Q 046577 335 DCFHLKVIAPNVISS-LIRLEELYMCNCSIE 364 (878)
Q Consensus 335 ~~~~l~~~~~~~~~~-l~~L~~L~l~~~~~~ 364 (878)
+|.....+|.. ++. ..++..+++.+|...
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCccc
Confidence 77744466655 444 345667777666543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=2.3e-07 Score=71.30 Aligned_cols=57 Identities=28% Similarity=0.394 Sum_probs=25.7
Q ss_pred CCcEEEeeCCCCCCCc-cccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCC
Q 046577 257 KLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRS 313 (878)
Q Consensus 257 ~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~ 313 (878)
+|++|++++|++..+| +.|..+++|++|++++|.+....|..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3444444444444443 23444444444444444444433334444444444444444
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=2.3e-07 Score=71.25 Aligned_cols=60 Identities=30% Similarity=0.447 Sum_probs=52.8
Q ss_pred CCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccc
Q 046577 229 PQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESIL 291 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~ 291 (878)
++|++|++++|.... +|.+.|.++++|++|++++|.++.+ |+.|..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~---i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE---IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE---ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc---cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 578899999987765 8988899999999999999999988 46889999999999999874
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=5.8e-07 Score=104.10 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=91.1
Q ss_pred CccEEEecCccccccchhhhcCCCCCCEEEcCCCCCc-ccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEc
Q 046577 280 KLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTV-QLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYM 358 (878)
Q Consensus 280 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l 358 (878)
.++.|+|++|.+.+.+|..|+++.+|+.|++++|.+. .+|..++++++|+.|++++|.....+|.. ++++++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4788999999999889999999999999999999987 88989999999999999999844467766 899999999999
Q ss_pred ccCcchhHHhhhcccCCCCChhhhcCC-CCCcEEEEEecCC
Q 046577 359 CNCSIEWEVERANSKRSNASLDELMHL-RWLTTLEIDVKNE 398 (878)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 398 (878)
++|.+. +..+..++.+ .++..+++.+|..
T Consensus 498 s~N~l~-----------g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLS-----------GRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCccc-----------ccCChHHhhccccCceEEecCCcc
Confidence 999876 4556666653 4677888888764
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=7.4e-07 Score=93.97 Aligned_cols=139 Identities=21% Similarity=0.213 Sum_probs=95.5
Q ss_pred HHHcCCCceEEEeccCccceeeccccccccccccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccc
Q 046577 650 LERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLIL 729 (878)
Q Consensus 650 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l 729 (878)
+..+.+++.|++++| .++++|. .+++|++|.+++|.+++.++. ..+++|+.|++++|..+..+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~----------LP~sLtsL~Lsnc~nLtsLP~------~LP~nLe~L~Ls~Cs~L~sL 110 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV----------LPNELTEITIENCNNLTTLPG------SIPEGLEKLTVCHCPEISGL 110 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC----------CCCCCcEEEccCCCCcccCCc------hhhhhhhheEccCccccccc
Confidence 556899999999988 7887752 345799999999999988774 22478999999999888876
Q ss_pred cCCCcccccCccEEEecC--CCCcccccchhHHhhcccccEEEEcccccccceecccccccccceeeeccccceecccCC
Q 046577 730 LPSSSVSFGNLTKLVASG--CKELMHLVTSSTAKTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLD 807 (878)
Q Consensus 730 ~~~~~~~l~~L~~L~l~~--c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 807 (878)
|. +|+.|++.. |..+..+| ++|+.|.+.++......... ...+++|++|.+.+|.
T Consensus 111 -P~------sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~~lp--------~~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 111 -PE------SVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQARID--------NLISPSLKTLSLTGCS 167 (426)
T ss_pred -cc------ccceEEeCCCCCcccccCc--------chHhheeccccccccccccc--------cccCCcccEEEecCCC
Confidence 54 477777753 22344443 36888888654322111100 1125789999999999
Q ss_pred CcceeeccCceeecCCcceeecccCC
Q 046577 808 SLTSFCSANYTFEFPSLQELGVICCP 833 (878)
Q Consensus 808 ~L~~l~~~~~~~~l~~L~~L~i~~C~ 833 (878)
.+. +|... -.+|+.|.+..+.
T Consensus 168 ~i~-LP~~L----P~SLk~L~ls~n~ 188 (426)
T PRK15386 168 NII-LPEKL----PESLQSITLHIEQ 188 (426)
T ss_pred ccc-Ccccc----cccCcEEEecccc
Confidence 763 34222 1489999997754
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.29 E-value=2.4e-06 Score=90.20 Aligned_cols=160 Identities=15% Similarity=0.145 Sum_probs=105.8
Q ss_pred ccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeeccccccccccccccccceeecccccccccccccCCC
Q 046577 628 FGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSK 707 (878)
Q Consensus 628 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~ 707 (878)
+.+++.|+++++.+..+|.- ..+|++|.+++|.+++.++. . .+++|+.|.+++|+++..++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L-----P~sLtsL~Lsnc~nLtsLP~-------~--LP~nLe~L~Ls~Cs~L~sLP----- 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL-----PNELTEITIENCNNLTTLPG-------S--IPEGLEKLTVCHCPEISGLP----- 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC-----CCCCcEEEccCCCCcccCCc-------h--hhhhhhheEccCcccccccc-----
Confidence 47899999977788888842 45799999999999987742 1 24689999999998887654
Q ss_pred CCCcccceeeEEeec--ccccccccCCCcccccCccEEEecCCCCcccccchhHHhhcccccEEEEcccccccceecccc
Q 046577 708 LGPIFQYLEILKVYH--CQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLGVYGCRAMTEVVINDK 785 (878)
Q Consensus 708 ~~~~~~~L~~L~l~~--c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 785 (878)
.+|+.|++.. |..+..+ |. +|++|.+.++........+. .--++|++|+|++|..+ .+|...
T Consensus 112 -----~sLe~L~L~~n~~~~L~~L-Ps------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~L- 175 (426)
T PRK15386 112 -----ESVRSLEIKGSATDSIKNV-PN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKL- 175 (426)
T ss_pred -----cccceEEeCCCCCcccccC-cc------hHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCcccc-
Confidence 5688888764 3334554 33 58888886543222111111 11268999999999755 344333
Q ss_pred cccccceeeeccccceecccCCCc-ceeeccCceeec-CCcceeecccCCCcc
Q 046577 786 DGVEKEEIVFRKLKTLELCDLDSL-TSFCSANYTFEF-PSLQELGVICCPKMK 836 (878)
Q Consensus 786 ~~~~~~~~~l~~L~~L~l~~c~~L-~~l~~~~~~~~l-~~L~~L~i~~C~~l~ 836 (878)
+.+|+.|.++.+..- ..++.. .+ +++ .|.+.+|-++.
T Consensus 176 ---------P~SLk~L~ls~n~~~sLeI~~~----sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 176 ---------PESLQSITLHIEQKTTWNISFE----GFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred ---------cccCcEEEecccccccccCccc----cccccc-EechhhhcccC
Confidence 579999999775311 122222 23 366 88888886553
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=1.1e-07 Score=105.19 Aligned_cols=129 Identities=21% Similarity=0.281 Sum_probs=76.7
Q ss_pred CCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecC
Q 046577 255 MRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLT 334 (878)
Q Consensus 255 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 334 (878)
+..+..+++..+.+..+-..++.+.+|.+|++.+|.+.+ +...+..+.+|++|++++|.|+.+. ++..++.|+.|++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 444445555555555543345566666666666666665 4333666667777777777666662 35666667777777
Q ss_pred CCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhh--hcCCCCCcEEEEEecCCCcC
Q 046577 335 DCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDE--LMHLRWLTTLEIDVKNESML 401 (878)
Q Consensus 335 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~ 401 (878)
+|. +..+.. +..+++|+.+++++|.+. .++. +..+..++.+.+.++.+..+
T Consensus 149 ~N~-i~~~~~--~~~l~~L~~l~l~~n~i~-------------~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 149 GNL-ISDISG--LESLKSLKLLDLSYNRIV-------------DIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred cCc-chhccC--CccchhhhcccCCcchhh-------------hhhhhhhhhccchHHHhccCCchhcc
Confidence 766 666654 555667777777666655 1222 35556666666666654433
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.17 E-value=2.5e-07 Score=92.64 Aligned_cols=196 Identities=18% Similarity=0.130 Sum_probs=102.5
Q ss_pred cccCccEEEecCccccccch----hhhcCCCCCCEEEcCCCCCcccc--------------hhhcCCCCccEEecCCCCC
Q 046577 277 LLVKLKTLCLDESILRDIDI----AIIGKLENLEILSFVRSDTVQLP--------------KALGQLTKLRLLDLTDCFH 338 (878)
Q Consensus 277 ~l~~L~~L~l~~~~~~~~~p----~~i~~L~~L~~L~l~~~~l~~lp--------------~~i~~L~~L~~L~l~~~~~ 338 (878)
.+++|++|+||+|-+....+ .-+..+..|++|.+.+|.+...- ..++.-++||.+...+|+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr- 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR- 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence 33455555555554432222 22334555666666665443211 112334667777777776
Q ss_pred CCccCcc----hhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhccccccc
Q 046577 339 LKVIAPN----VISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQV 414 (878)
Q Consensus 339 l~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~ 414 (878)
+..-+.. .+...+.|+++.+..|.+..++ .......+..+++|+.|++..|..+.--.....
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG-------~~al~eal~~~~~LevLdl~DNtft~egs~~La------- 234 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEG-------VTALAEALEHCPHLEVLDLRDNTFTLEGSVALA------- 234 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCch-------hHHHHHHHHhCCcceeeecccchhhhHHHHHHH-------
Confidence 5444421 2445567777777777665222 123456677778888888876654321111100
Q ss_pred ccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccc--cc
Q 046577 415 SQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYI--FS 492 (878)
Q Consensus 415 l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~--~~ 492 (878)
..+..+++|++|++.+|.++.-+...+... +-...|+|+.|.+.++..-.+- ..
T Consensus 235 -----------------------kaL~s~~~L~El~l~dcll~~~Ga~a~~~a-l~~~~p~L~vl~l~gNeIt~da~~~l 290 (382)
T KOG1909|consen 235 -----------------------KALSSWPHLRELNLGDCLLENEGAIAFVDA-LKESAPSLEVLELAGNEITRDAALAL 290 (382)
T ss_pred -----------------------HHhcccchheeecccccccccccHHHHHHH-HhccCCCCceeccCcchhHHHHHHHH
Confidence 001146778888888886664322211100 0113678888888874332221 00
Q ss_pred hhhhcccCCcCEEEEeCCc
Q 046577 493 ASMIGSLKQLQHLDIRDCK 511 (878)
Q Consensus 493 ~~~l~~l~~L~~L~l~~~~ 511 (878)
...+...|.|+.|+|++|.
T Consensus 291 a~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 291 AACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHhcchhhHHhcCCccc
Confidence 1123457888888888887
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.04 E-value=5.6e-07 Score=99.62 Aligned_cols=104 Identities=24% Similarity=0.319 Sum_probs=54.4
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+.++..|++..|.+.. +... +..+.+|++|++++|.|+.+.. +..+..|+.|++.+|.+.. ...+..+.+|+
T Consensus 93 ~~~~l~~l~l~~n~i~~---i~~~-l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~ 165 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK---IENL-LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISD--ISGLESLKSLK 165 (414)
T ss_pred cccceeeeeccccchhh---cccc-hhhhhcchheeccccccccccc-hhhccchhhheeccCcchh--ccCCccchhhh
Confidence 44555555555555433 2221 2445566666666666555532 4455556666666665553 23344455566
Q ss_pred EEEcCCCCCcccchh-hcCCCCccEEecCCCC
Q 046577 307 ILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCF 337 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 337 (878)
.+++++|.+..+... ...+.+++.+.+.+|.
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 666666655554332 3555555555555554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=3.4e-06 Score=82.47 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=38.0
Q ss_pred cccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccch
Q 046577 497 GSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIF 574 (878)
Q Consensus 497 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~l 574 (878)
.-+|++..+-+..|+ ++....+.... .||.+-.|.+.. .++.+|........||+|..|.+.+.|-...+
T Consensus 196 r~Fpnv~sv~v~e~P-lK~~s~ek~se------~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGP-LKTESSEKGSE------PFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccchheeeecCc-ccchhhcccCC------CCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 345666666666666 44443322211 366666666655 45555544333445777777777766544433
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.92 E-value=7.7e-07 Score=101.80 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=24.3
Q ss_pred ccceecccCCCcceeeccCceeecCCcceeecccCCCcccc
Q 046577 798 LKTLELCDLDSLTSFCSANYTFEFPSLQELGVICCPKMKIF 838 (878)
Q Consensus 798 L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~l 838 (878)
++.|++..|...+.-........+..++.+++.+|+.+..-
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 77777777776654443321111556677777777766543
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.92 E-value=1.1e-06 Score=95.97 Aligned_cols=131 Identities=23% Similarity=0.294 Sum_probs=94.5
Q ss_pred CCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecC
Q 046577 256 RKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLT 334 (878)
Q Consensus 256 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~ 334 (878)
..|.+-+.++|.+..+..++.-+++|+.|+|+.|++.. ...+..|++|++|||++|.+..+|.- ...+ +|+.|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhccccccchhhh-hheeeeec
Confidence 35666677777777777778888888888888888885 34788888888888888888877752 2222 38888888
Q ss_pred CCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCC
Q 046577 335 DCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLP 402 (878)
Q Consensus 335 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 402 (878)
+|. ++.+-. +.+|++|+.|+++.|-+. +...+.-|..+..|+.|.+.||.....|
T Consensus 241 nN~-l~tL~g--ie~LksL~~LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 241 NNA-LTTLRG--IENLKSLYGLDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred ccH-HHhhhh--HHhhhhhhccchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 887 777765 788888888888888665 1122444555667788888888754433
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.7e-05 Score=55.47 Aligned_cols=38 Identities=32% Similarity=0.466 Sum_probs=17.7
Q ss_pred CCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCcc
Q 046577 304 NLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVI 342 (878)
Q Consensus 304 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~ 342 (878)
+|++|++++|+++.+|..+++|++|++|++++|. ++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 4445555555555554445555555555555554 4433
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=7.6e-06 Score=94.36 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=82.8
Q ss_pred ccceEEEEecccc--ccCCCC--CCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCcc
Q 046577 207 KKCYAISIRYCCI--HELPNA--LECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLK 282 (878)
Q Consensus 207 ~~~~~L~l~~~~~--~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~ 282 (878)
+++++|++.+... ...+.. ..+|.||+|.+.+...... --..++.++++|++||+|+++++.+ ..+++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~--dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND--DFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch--hHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 3566666665321 122222 2688899998877654321 1123467889999999999988887 5688899999
Q ss_pred EEEecCccccc-cchhhhcCCCCCCEEEcCCCCCcccchh-------hcCCCCccEEecCCCC
Q 046577 283 TLCLDESILRD-IDIAIIGKLENLEILSFVRSDTVQLPKA-------LGQLTKLRLLDLTDCF 337 (878)
Q Consensus 283 ~L~l~~~~~~~-~~p~~i~~L~~L~~L~l~~~~l~~lp~~-------i~~L~~L~~L~l~~~~ 337 (878)
+|.+++=.+.. .....+.+|++|++||+|.......+.- -..|++||.||.++..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 99888776654 2445677888888888888644332211 1236677777766554
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=2.9e-05 Score=54.28 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=17.2
Q ss_pred CccEEEecCccccccchhhhcCCCCCCEEEcCCCCCccc
Q 046577 280 KLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQL 318 (878)
Q Consensus 280 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~l 318 (878)
+|++|++++|.+.. +|..+++|++|++|++++|+++.+
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 34444444444444 444444555555555555544443
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=2.7e-06 Score=73.45 Aligned_cols=107 Identities=14% Similarity=0.269 Sum_probs=72.7
Q ss_pred EEEEeccccccCCCC----CCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEe
Q 046577 211 AISIRYCCIHELPNA----LECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCL 286 (878)
Q Consensus 211 ~L~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l 286 (878)
.+++++|.+..+++. ....+|...++++|.... +|+.+-.+++.+..|++++|.+.++|..+..++.||.|++
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~---fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK---FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhh---CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 344555544433332 245667777777776654 7777666667777777777777777777777777777777
Q ss_pred cCccccccchhhhcCCCCCCEEEcCCCCCcccchh
Q 046577 287 DESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA 321 (878)
Q Consensus 287 ~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~ 321 (878)
+.|++.. .|..|..|.+|-.|+..++.+..+|..
T Consensus 108 ~~N~l~~-~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 108 RFNPLNA-EPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccCcccc-chHHHHHHHhHHHhcCCCCccccCcHH
Confidence 7777776 777777777777777777766666654
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=1.5e-05 Score=78.08 Aligned_cols=84 Identities=26% Similarity=0.328 Sum_probs=56.1
Q ss_pred hCCCCCcEEEeeCCCCCC---CccccccccCccEEEecCccccccchhhh-cCCCCCCEEEcCCCCCc--ccchhhcCCC
Q 046577 253 VGMRKLKVVDFTGMQLFS---LPSSIDLLVKLKTLCLDESILRDIDIAII-GKLENLEILSFVRSDTV--QLPKALGQLT 326 (878)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~---lp~~~~~l~~L~~L~l~~~~~~~~~p~~i-~~L~~L~~L~l~~~~l~--~lp~~i~~L~ 326 (878)
....+++.|||.+|.|+. +-..+.++++|++|+++.|++.. ...+. ..+.+|++|-+.++.+. .....+..++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 446777888888887763 34445677788888888877654 22333 35567888888877543 4545567777
Q ss_pred CccEEecCCCC
Q 046577 327 KLRLLDLTDCF 337 (878)
Q Consensus 327 ~L~~L~l~~~~ 337 (878)
.++.|+++.|.
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 77777777764
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=6.9e-07 Score=97.38 Aligned_cols=128 Identities=20% Similarity=0.191 Sum_probs=95.1
Q ss_pred CCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhh-hcCCCCCC
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAI-IGKLENLE 306 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-i~~L~~L~ 306 (878)
...|.+.++++|.... -+..+.-++.|+.|||++|++++.. .+..|.+|++|||++|.+.. +|.. ...+ +|+
T Consensus 163 Wn~L~~a~fsyN~L~~----mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~ 235 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVL----MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQ 235 (1096)
T ss_pred hhhHhhhhcchhhHHh----HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhcc-ccccchhhh-hhe
Confidence 3455556666665532 2334577889999999999998776 68889999999999998886 5542 2233 499
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccC-cchhcCCccccEEEcccCcch
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIA-PNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~ 364 (878)
.|.+++|.++++ .++.+|.+|+.||++.|- +.... -..++.|..|..|.+.+|.+-
T Consensus 236 ~L~lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999998888 578999999999999986 33222 112667788999999998775
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.66 E-value=4e-05 Score=74.19 Aligned_cols=137 Identities=20% Similarity=0.176 Sum_probs=78.2
Q ss_pred CCCCCcEEEeeCCCCC-----CCccccccccCccEEEecCcccc---c-------cchhhhcCCCCCCEEEcCCCCCc-c
Q 046577 254 GMRKLKVVDFTGMQLF-----SLPSSIDLLVKLKTLCLDESILR---D-------IDIAIIGKLENLEILSFVRSDTV-Q 317 (878)
Q Consensus 254 ~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~---~-------~~p~~i~~L~~L~~L~l~~~~l~-~ 317 (878)
.+..+..+|||+|.|. .+...+.+-.+|+..++++-... . .+.+.+-++++|+..+++.|-+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3566777777777665 23344555567777777653211 1 13345667888888888888654 4
Q ss_pred cchh----hcCCCCccEEecCCCCCCCccCcchhc-------------CCccccEEEcccCcchhHHhhhcccCCCCChh
Q 046577 318 LPKA----LGQLTKLRLLDLTDCFHLKVIAPNVIS-------------SLIRLEELYMCNCSIEWEVERANSKRSNASLD 380 (878)
Q Consensus 318 lp~~----i~~L~~L~~L~l~~~~~l~~~~~~~~~-------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 380 (878)
.|+. |++-+.|.||.+++|. +..+..+-++ +-+.|+...+..|.+.- ........
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-------gs~~~~a~ 179 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-------GSKELSAA 179 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-------CcHHHHHH
Confidence 4433 5677889999998887 5554433233 33456666665555430 00111122
Q ss_pred hhcCCCCCcEEEEEecCC
Q 046577 381 ELMHLRWLTTLEIDVKNE 398 (878)
Q Consensus 381 ~l~~l~~L~~L~l~~~~~ 398 (878)
.+....+|+.+.+..|++
T Consensus 180 ~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 180 LLESHENLKEVKIQQNGI 197 (388)
T ss_pred HHHhhcCceeEEeeecCc
Confidence 334445666666665554
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.58 E-value=7.2e-06 Score=93.77 Aligned_cols=214 Identities=18% Similarity=0.116 Sum_probs=116.9
Q ss_pred ccCCcEEEE-ecCCCCccchhHHHHHcCCCceEEEecc-CccceeeccccccccccccccccceeecccccccccccccC
Q 046577 628 FGSLKRLVI-AEDDSAGFPIWNVLERFHNLEILTLFNF-SFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQD 705 (878)
Q Consensus 628 ~~~L~~L~l-~~~~~~~~~~~~~l~~l~~L~~L~l~~c-~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 705 (878)
++.|+.|.+ .+..+.......+...++.|+.|++++| ......+... ......+++|+.|+++.|..++......
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL---LLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh---hhhhhhcCCcCccchhhhhccCchhHHH
Confidence 577788777 3434443221114677888888888773 3322221100 1123345777778887777544322111
Q ss_pred CCCCCcccceeeEEeeccccccccc-CCCcccccCccEEEecCCCCcccccchhHHhhcccccEEEEcccc---ccccee
Q 046577 706 SKLGPIFQYLEILKVYHCQSLLILL-PSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLGVYGCR---AMTEVV 781 (878)
Q Consensus 706 ~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~---~l~~~~ 781 (878)
.. ..+++|++|.+.+|..+++.. -.....+++|++|+|++|..+++........++++|+.|.+..+. .++...
T Consensus 264 l~--~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~ 341 (482)
T KOG1947|consen 264 LA--SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLS 341 (482)
T ss_pred HH--hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHH
Confidence 11 236778888877777654431 112456677888888888777654444556667776666555443 344432
Q ss_pred cccccccccceeee-ccccceecccCCCcceeeccCceeecCCcc-eeecccCCCc-cccCCCCCCCCCceEEEee
Q 046577 782 INDKDGVEKEEIVF-RKLKTLELCDLDSLTSFCSANYTFEFPSLQ-ELGVICCPKM-KIFTTGESITPPGVYVWYG 854 (878)
Q Consensus 782 ~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~-~L~i~~C~~l-~~lp~~~~~~p~L~~l~~~ 854 (878)
..... ... -.+..+.+.+|++++++..... ...... .+.+.+||.+ ..+......++.++.+.+.
T Consensus 342 l~~~~------~~~~d~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~ 409 (482)
T KOG1947|consen 342 LSGLL------TLTSDDLAELILRSCPKLTDLSLSYC--GISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLS 409 (482)
T ss_pred HHHhh------ccCchhHhHHHHhcCCCcchhhhhhh--hccCcchHHHhcCCcccchHHHHHhccCCccceEecc
Confidence 21110 001 2677777888888877765542 123333 5677888888 3332222233446777766
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=6.4e-05 Score=86.89 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=65.5
Q ss_pred CCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC--CCccccccccCccEEEecCccccccchhhhcCCCCC
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF--SLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENL 305 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L 305 (878)
-.+|+.|+++|...-.. ..|..+-..++.||.|.+++-.+. ++-.-..++++|+.||++++.+.. + ..++.|++|
T Consensus 121 r~nL~~LdI~G~~~~s~-~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSN-GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhc-cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccH
Confidence 35677777776543221 155555556777777777776554 233344566777777777777764 2 667777777
Q ss_pred CEEEcCCCCCccc--chhhcCCCCccEEecCCCC
Q 046577 306 EILSFVRSDTVQL--PKALGQLTKLRLLDLTDCF 337 (878)
Q Consensus 306 ~~L~l~~~~l~~l--p~~i~~L~~L~~L~l~~~~ 337 (878)
|+|.+.+=.+..- -..+.+|++|++||++...
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 7777666544421 1345667777777777654
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.39 E-value=2.1e-05 Score=68.08 Aligned_cols=90 Identities=17% Similarity=0.174 Sum_probs=56.5
Q ss_pred hCCCCCcEEEeeCCCCCCCccccccc-cCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEE
Q 046577 253 VGMRKLKVVDFTGMQLFSLPSSIDLL-VKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLL 331 (878)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~~~~l-~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 331 (878)
.+..+|...+|++|.++++|+.|... +.+..|++.+|.+.. +|..+..++.|+.|+++.|.+...|.-|..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 34455666667777766666655433 356666666666666 6666666666666666666666666666666666666
Q ss_pred ecCCCCCCCccCc
Q 046577 332 DLTDCFHLKVIAP 344 (878)
Q Consensus 332 ~l~~~~~l~~~~~ 344 (878)
+..++. ...+|.
T Consensus 129 ds~~na-~~eid~ 140 (177)
T KOG4579|consen 129 DSPENA-RAEIDV 140 (177)
T ss_pred cCCCCc-cccCcH
Confidence 666655 444443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.00095 Score=62.30 Aligned_cols=41 Identities=20% Similarity=0.339 Sum_probs=18.2
Q ss_pred hhCCCCCcEEEeeCCCCCCCcccccc-ccCccEEEecCcccc
Q 046577 252 FVGMRKLKVVDFTGMQLFSLPSSIDL-LVKLKTLCLDESILR 292 (878)
Q Consensus 252 ~~~l~~Lr~L~L~~~~i~~lp~~~~~-l~~L~~L~l~~~~~~ 292 (878)
|.+++.|..|.+.+|.|+.+...+.. +++|..|.+.+|.+.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 34445555555555555544222222 233444444444443
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.89 E-value=0.0018 Score=60.58 Aligned_cols=83 Identities=19% Similarity=0.164 Sum_probs=66.4
Q ss_pred cceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc--cccccccCccEEE
Q 046577 208 KCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP--SSIDLLVKLKTLC 285 (878)
Q Consensus 208 ~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~ 285 (878)
..-.+++++|++..++....++.|.+|.+..|++.. |.+.+-.-+++|..|.|.+|.|..+. +.+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~---I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITR---IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCccee---eccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455788889999888887789999999999999876 77766566788999999999988663 2355677888888
Q ss_pred ecCccccc
Q 046577 286 LDESILRD 293 (878)
Q Consensus 286 l~~~~~~~ 293 (878)
+-+|.+..
T Consensus 120 ll~Npv~~ 127 (233)
T KOG1644|consen 120 LLGNPVEH 127 (233)
T ss_pred ecCCchhc
Confidence 88777654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.33 E-value=0.013 Score=52.90 Aligned_cols=117 Identities=18% Similarity=0.305 Sum_probs=41.7
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEecCccccccchhhhcCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLENL 305 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L 305 (878)
.+++|+.+.+... ... ++...|.++..|+.+++..+ +..++ ..+.++..|+.+.+.+ .+.......+..+.+|
T Consensus 10 ~~~~l~~i~~~~~-~~~---I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 10 NCSNLESITFPNT-IKK---IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp T-TT--EEEETST---E---E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCCCEEEECCC-eeE---eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 3445555555432 211 55555666666666666553 44432 2344555566666644 2222123344445555
Q ss_pred CEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccc
Q 046577 306 EILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRL 353 (878)
Q Consensus 306 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L 353 (878)
+.+++..+ +..++.. +.+. +|+.+.+..+ +..++...+.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 55555443 3333322 4443 5555554431 344444444444443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0025 Score=62.32 Aligned_cols=82 Identities=26% Similarity=0.365 Sum_probs=39.4
Q ss_pred CCCCcEEEeeCCCCCCCccccccccCccEEEecCc--cccccchhhhcCCCCCCEEEcCCCCCcccc--hhhcCCCCccE
Q 046577 255 MRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDES--ILRDIDIAIIGKLENLEILSFVRSDTVQLP--KALGQLTKLRL 330 (878)
Q Consensus 255 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~--~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~ 330 (878)
+..|..|++.+..++++- .+..|++|++|.++.| .+.+-++-...++++|++|++++|++..+- ....++.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 344444444444444322 1234556666666666 443333334444566666666666544210 11344555555
Q ss_pred EecCCCC
Q 046577 331 LDLTDCF 337 (878)
Q Consensus 331 L~l~~~~ 337 (878)
|++.+|.
T Consensus 121 Ldl~n~~ 127 (260)
T KOG2739|consen 121 LDLFNCS 127 (260)
T ss_pred hhcccCC
Confidence 5555554
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.95 E-value=0.019 Score=51.78 Aligned_cols=108 Identities=18% Similarity=0.307 Sum_probs=64.5
Q ss_pred cChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcC
Q 046577 247 IPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQ 324 (878)
Q Consensus 247 l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~ 324 (878)
+++.+|.++.+|+.+.+.. .+..+ ...|..+.+|+.+.+.++ +.......+.++.+|+.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 6777889999999999875 56666 456778888999998875 5553445677777888888865 55555443 666
Q ss_pred CCCccEEecCCCCCCCccCcchhcCCccccEEEccc
Q 046577 325 LTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCN 360 (878)
Q Consensus 325 L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~ 360 (878)
+++|+.+.+..+ +..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 888888888653 567777767777 888887654
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.73 E-value=0.008 Score=58.90 Aligned_cols=57 Identities=30% Similarity=0.398 Sum_probs=28.7
Q ss_pred cCccEEEecCccccccchhh---hcCCCCCCEEEcCCCCCcccc----hhhcCCCCccEEecCCCC
Q 046577 279 VKLKTLCLDESILRDIDIAI---IGKLENLEILSFVRSDTVQLP----KALGQLTKLRLLDLTDCF 337 (878)
Q Consensus 279 ~~L~~L~l~~~~~~~~~p~~---i~~L~~L~~L~l~~~~l~~lp----~~i~~L~~L~~L~l~~~~ 337 (878)
++|++|++++|++. +++. ...+.+|..|++..|..+.+- ..+..+++|.+|+-....
T Consensus 91 P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred CceeEEeecCCccc--cccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 44444444444443 1222 223445555566555444331 125556778887766654
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.51 E-value=0.0018 Score=60.54 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=17.7
Q ss_pred ccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHH
Q 046577 473 FQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQE 515 (878)
Q Consensus 473 l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 515 (878)
++.++.|.+.+|..+.+..-...-+-.++|+.|+|++|+.|++
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 3444444444444444432111112234444444444444443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.0012 Score=64.62 Aligned_cols=78 Identities=26% Similarity=0.304 Sum_probs=38.1
Q ss_pred CccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCc-chhcCCccccEEEc
Q 046577 280 KLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAP-NVISSLIRLEELYM 358 (878)
Q Consensus 280 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l 358 (878)
+.+.|+..+|.+. ......+|+.|++|.|+-|+|+.+. .+..+++|++|.|..|. |.++.. ..+.++++|+.|.+
T Consensus 20 ~vkKLNcwg~~L~--DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD--DISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCcc--HHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 3444555555544 2333445555555555555555552 24555555555555554 444332 11334555555555
Q ss_pred ccC
Q 046577 359 CNC 361 (878)
Q Consensus 359 ~~~ 361 (878)
..|
T Consensus 96 ~EN 98 (388)
T KOG2123|consen 96 DEN 98 (388)
T ss_pred ccC
Confidence 444
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.0041 Score=58.32 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=21.3
Q ss_pred hcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceecccccccccc
Q 046577 496 IGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRC 547 (878)
Q Consensus 496 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~ 547 (878)
+..++.++.|.+.+|..+.++..+..+. .+|+|+.|+|++|+.+++
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~------~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGG------LAPSLQDLDLSGCPRITD 166 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcc------cccchheeeccCCCeech
Confidence 4445555555555555554443332221 244455555554444443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.24 E-value=0.0081 Score=34.76 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=6.9
Q ss_pred CCEEEcCCCCCcccchh
Q 046577 305 LEILSFVRSDTVQLPKA 321 (878)
Q Consensus 305 L~~L~l~~~~l~~lp~~ 321 (878)
|++||+++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 33444444444444433
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.22 E-value=0.0048 Score=60.25 Aligned_cols=63 Identities=16% Similarity=0.052 Sum_probs=32.0
Q ss_pred CCCCCCEEEcCCCCCcccchhh-----cCCCCccEEecCCCCCCCcc-----CcchhcCCccccEEEcccCcch
Q 046577 301 KLENLEILSFVRSDTVQLPKAL-----GQLTKLRLLDLTDCFHLKVI-----APNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 301 ~L~~L~~L~l~~~~l~~lp~~i-----~~L~~L~~L~l~~~~~l~~~-----~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
+-+.|++.....|++...|... ..-.+|+++.+..|. +..- ....+..+.+|+.|++..|.++
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 4456677766666665544321 112456666666654 2211 0001234456666666666655
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.06 E-value=0.0084 Score=34.70 Aligned_cols=19 Identities=21% Similarity=0.081 Sum_probs=8.4
Q ss_pred ccEEEecCccccccchhhhc
Q 046577 281 LKTLCLDESILRDIDIAIIG 300 (878)
Q Consensus 281 L~~L~l~~~~~~~~~p~~i~ 300 (878)
|++|++++|.++. +|.+|+
T Consensus 2 L~~Ldls~n~l~~-ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTS-IPSSFS 20 (22)
T ss_dssp ESEEEETSSEESE-EGTTTT
T ss_pred ccEEECCCCcCEe-CChhhc
Confidence 4444444444443 444433
No 75
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.23 E-value=0.79 Score=57.02 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=92.8
Q ss_pred CCChHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCCchhHHHHHHHhcCCCCCCcCCchhhHH
Q 046577 11 NLNEEEAGRLFKMMAGDDVENRELKSTAIDVARACGGLPIALTTVAKALRGKSLHEWKNSLRELRTPSMVNFEGVSAETY 90 (878)
Q Consensus 11 ~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k~~~~W~~~l~~l~~~~~~~~~~~~~~i~ 90 (878)
+|+.+|+-++|....|..-. .+...++.+.|+|.|+++..++..+.+..... ......+... ...++.
T Consensus 185 ~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~ 252 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL-HDSARRLAGI-------NASHLS 252 (903)
T ss_pred CCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch-hhhhHhhcCC-------CchhHH
Confidence 89999999999887764222 35567899999999999999988775442110 1111111100 012244
Q ss_pred HHHH-HHHhcCCCchhHHHHHHhccCCCCCChhHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHhccccc-ccC-CCC
Q 046577 91 SSIE-LSFKYLKGGQLKELFQLCSLMGNSIPTLKLLKYSIGLGIFQGVNKMEDARNKLYALVHELRDSCLLL-EGD-SNK 167 (878)
Q Consensus 91 ~~L~-lSy~~L~~~~lk~cFly~~~fp~~i~~~~li~~w~~~g~~~~~~~~e~~~~~~~~~l~~L~~r~l~~-~~~-~~~ 167 (878)
..+. --|+.||++ .+..+...|+++ .+.. .+...- . +..+.+ ..+++|.+++++. +.+ ...
T Consensus 253 ~~l~~~v~~~l~~~-~~~~l~~~a~~~-~~~~-~l~~~l-----~-~~~~~~-------~~L~~l~~~~l~~~~~~~~~~ 316 (903)
T PRK04841 253 DYLVEEVLDNVDLE-TRHFLLRCSVLR-SMND-ALIVRV-----T-GEENGQ-------MRLEELERQGLFIQRMDDSGE 316 (903)
T ss_pred HHHHHHHHhcCCHH-HHHHHHHhcccc-cCCH-HHHHHH-----c-CCCcHH-------HHHHHHHHCCCeeEeecCCCC
Confidence 4433 347899997 899999999987 5543 222221 1 111111 2388999999875 333 334
Q ss_pred cEEccHHHHHHHHHHhh
Q 046577 168 LISMHDVVRDVARSIAC 184 (878)
Q Consensus 168 ~~~mHdl~~~l~~~~~~ 184 (878)
.|+.|++++++......
T Consensus 317 ~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 317 WFRYHPLFASFLRHRCQ 333 (903)
T ss_pred EEehhHHHHHHHHHHHH
Confidence 79999999999887653
No 76
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.0024 Score=62.53 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=57.5
Q ss_pred hhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccch--hhhcCCCCCCEEEcCCCCCc-ccc-----hh
Q 046577 250 NFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDI--AIIGKLENLEILSFVRSDTV-QLP-----KA 321 (878)
Q Consensus 250 ~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L~l~~~~l~-~lp-----~~ 321 (878)
++..+++.|.||.|+-|.|+++.. +..|++|+.|.|+.|.|.. +- .-+.++++|++|-|..|.-. .-+ .-
T Consensus 35 sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~V 112 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKV 112 (388)
T ss_pred HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHhhccCCcccccchhHHHHH
Confidence 446788888888888888888743 7788888888888888775 32 34567888888888776321 111 12
Q ss_pred hcCCCCccEEe
Q 046577 322 LGQLTKLRLLD 332 (878)
Q Consensus 322 i~~L~~L~~L~ 332 (878)
+..|++|+.||
T Consensus 113 LR~LPnLkKLD 123 (388)
T KOG2123|consen 113 LRVLPNLKKLD 123 (388)
T ss_pred HHHcccchhcc
Confidence 55678888775
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.56 E-value=0.0035 Score=59.70 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=51.1
Q ss_pred hCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEe
Q 046577 253 VGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLD 332 (878)
Q Consensus 253 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 332 (878)
..++...+||++.|++..+-..|+.++.|..|+++.+.+.. +|+.++.+..++++++..|..+..|.++++++.+++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 34555566666666655555555556666666666666555 66666666666666666666666666666666666666
Q ss_pred cCCCC
Q 046577 333 LTDCF 337 (878)
Q Consensus 333 l~~~~ 337 (878)
+.++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 55554
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.63 E-value=0.076 Score=28.41 Aligned_cols=16 Identities=38% Similarity=0.683 Sum_probs=6.2
Q ss_pred CCcEEEeeCCCCCCCc
Q 046577 257 KLKVVDFTGMQLFSLP 272 (878)
Q Consensus 257 ~Lr~L~L~~~~i~~lp 272 (878)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.33 E-value=0.099 Score=27.96 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=5.4
Q ss_pred CCCEEEcCCCCCccc
Q 046577 304 NLEILSFVRSDTVQL 318 (878)
Q Consensus 304 ~L~~L~l~~~~l~~l 318 (878)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.73 E-value=0.013 Score=56.00 Aligned_cols=84 Identities=12% Similarity=0.049 Sum_probs=65.3
Q ss_pred CCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCE
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEI 307 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 307 (878)
....++||++.|+... +... |+.+..|..||++.+++..+|+.++.+..++.+++..|.... .|.+++.++++++
T Consensus 41 ~kr~tvld~~s~r~vn---~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~-~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN---LGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ-QPKSQKKEPHPKK 115 (326)
T ss_pred cceeeeehhhhhHHHh---hccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh-CCccccccCCcch
Confidence 4556667776665432 3333 577788888899988888889888888888888888887777 8999999999999
Q ss_pred EEcCCCCCc
Q 046577 308 LSFVRSDTV 316 (878)
Q Consensus 308 L~l~~~~l~ 316 (878)
+++.+|.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 998888654
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.65 E-value=0.62 Score=28.08 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=10.6
Q ss_pred CCCCEEEcCCCCCcccchh
Q 046577 303 ENLEILSFVRSDTVQLPKA 321 (878)
Q Consensus 303 ~~L~~L~l~~~~l~~lp~~ 321 (878)
.+|++|++++|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555555555555555544
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.65 E-value=0.62 Score=28.08 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=10.6
Q ss_pred CCCCEEEcCCCCCcccchh
Q 046577 303 ENLEILSFVRSDTVQLPKA 321 (878)
Q Consensus 303 ~~L~~L~l~~~~l~~lp~~ 321 (878)
.+|++|++++|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555555555555555544
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.85 E-value=0.7 Score=27.91 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=13.6
Q ss_pred cCCcceeecccCCCccc
Q 046577 821 FPSLQELGVICCPKMKI 837 (878)
Q Consensus 821 l~~L~~L~i~~C~~l~~ 837 (878)
+|+|++|+|++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47888888888888864
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.44 E-value=0.94 Score=27.27 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=18.2
Q ss_pred CCCccEEecCCCCCCCccCcchhc
Q 046577 325 LTKLRLLDLTDCFHLKVIAPNVIS 348 (878)
Q Consensus 325 L~~L~~L~l~~~~~l~~~~~~~~~ 348 (878)
|++|++|++++|. ++.+|.+.+.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHcc
Confidence 5678999999987 8888877543
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.44 E-value=0.94 Score=27.27 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=18.2
Q ss_pred CCCccEEecCCCCCCCccCcchhc
Q 046577 325 LTKLRLLDLTDCFHLKVIAPNVIS 348 (878)
Q Consensus 325 L~~L~~L~l~~~~~l~~~~~~~~~ 348 (878)
|++|++|++++|. ++.+|.+.+.
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHcc
Confidence 5678999999987 8888877543
No 86
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=72.17 E-value=15 Score=37.87 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=43.8
Q ss_pred CccEEccCCChHHHHHHHHHhc---CCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHh
Q 046577 4 EDNFLINNLNEEEAGRLFKMMA---GDDVENRELKSTAIDVARACGGLPIALTTVAKAL 59 (878)
Q Consensus 4 ~~~~~l~~L~~~~~~~Lf~~~a---~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L 59 (878)
...+++++++.+|..+++...+ |......=-.+..+.|++.++|.|..|..++..+
T Consensus 184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 3467899999999999998877 3211111224789999999999999999998887
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.59 E-value=1.5 Score=25.77 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=6.5
Q ss_pred cCccEEEecCccccc
Q 046577 279 VKLKTLCLDESILRD 293 (878)
Q Consensus 279 ~~L~~L~l~~~~~~~ 293 (878)
++|++|++++|.+..
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555443
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.35 E-value=4.4 Score=24.41 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=12.6
Q ss_pred CCcEEEeeCCCCCCCcc
Q 046577 257 KLKVVDFTGMQLFSLPS 273 (878)
Q Consensus 257 ~Lr~L~L~~~~i~~lp~ 273 (878)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56777777777777775
No 89
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=63.11 E-value=1.5e+02 Score=31.52 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=73.2
Q ss_pred ccEEccCCChHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCCchhHHHHHHHhcCCCCCCcCC
Q 046577 5 DNFLINNLNEEEAGRLFKMMAGDDVENRELKSTAIDVARACGGLPIALTTVAKALRGKSLHEWKNSLRELRTPSMVNFEG 84 (878)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k~~~~W~~~l~~l~~~~~~~~~~ 84 (878)
..++++++++++..+++.+.++..... --++....|++.|+|.|=.+..+...+. .|..+.+ .. .....
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~---~~-~I~~~- 241 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG---DG-VITKE- 241 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC---CC-CCCHH-
Confidence 468999999999999999998422111 1136789999999999955444443321 1221110 01 00001
Q ss_pred chhhHHHHHHHHHhcCCCchhHHHHH-HhccCCC-CCChhHHHHHHhhcccccCcchHHHHHHHHHHHHH-HHHhccccc
Q 046577 85 VSAETYSSIELSFKYLKGGQLKELFQ-LCSLMGN-SIPTLKLLKYSIGLGIFQGVNKMEDARNKLYALVH-ELRDSCLLL 161 (878)
Q Consensus 85 ~~~~i~~~L~lSy~~L~~~~lk~cFl-y~~~fp~-~i~~~~li~~w~~~g~~~~~~~~e~~~~~~~~~l~-~L~~r~l~~ 161 (878)
.-......+...|..|+..+ +.-+. ....|+. .+..+.+-... -.+..+.+++ ++ .|++.+|++
T Consensus 242 ~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~a~~l-----g~~~~~~~~~-------~e~~Li~~~li~ 308 (328)
T PRK00080 242 IADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGGPVGLDTLAAAL-----GEERDTIEDV-------YEPYLIQQGFIQ 308 (328)
T ss_pred HHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCCceeHHHHHHHH-----CCCcchHHHH-------hhHHHHHcCCcc
Confidence 11234455566677787663 44443 4445654 34444443222 1122334444 34 578888885
Q ss_pred c
Q 046577 162 E 162 (878)
Q Consensus 162 ~ 162 (878)
.
T Consensus 309 ~ 309 (328)
T PRK00080 309 R 309 (328)
T ss_pred c
Confidence 3
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=54.58 E-value=11 Score=22.87 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=7.3
Q ss_pred CCCCEEEcCCCCCc
Q 046577 303 ENLEILSFVRSDTV 316 (878)
Q Consensus 303 ~~L~~L~l~~~~l~ 316 (878)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555544
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=50.87 E-value=0.49 Score=52.79 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=8.3
Q ss_pred CCCCCcEEEeeCCCC
Q 046577 254 GMRKLKVVDFTGMQL 268 (878)
Q Consensus 254 ~l~~Lr~L~L~~~~i 268 (878)
...+++.+|++.|.+
T Consensus 170 ~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 170 KNEHLTELDLSLNGL 184 (478)
T ss_pred cccchhHHHHHhccc
Confidence 355555666655544
No 92
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=47.65 E-value=3.1e+02 Score=28.69 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=38.5
Q ss_pred ccEEccCCChHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHH
Q 046577 5 DNFLINNLNEEEAGRLFKMMAGDDVENRELKSTAIDVARACGGLPIALTTVAK 57 (878)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~ 57 (878)
..+++++++.+|..+++.+.++..... --.+....|++.|+|.|-.+..++.
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~-~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVE-IEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHhCCCcchHHHHHH
Confidence 467999999999999999998421111 1145678899999999966655544
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=39.62 E-value=20 Score=21.98 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=5.9
Q ss_pred CCcEEEeeCCCC
Q 046577 257 KLKVVDFTGMQL 268 (878)
Q Consensus 257 ~Lr~L~L~~~~i 268 (878)
+|++|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 445555555544
No 94
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=35.96 E-value=2.3 Score=47.55 Aligned_cols=13 Identities=23% Similarity=0.089 Sum_probs=6.4
Q ss_pred CCCccEEEcCCCC
Q 046577 228 CPQLEFLCMSPED 240 (878)
Q Consensus 228 ~~~Lr~L~l~~~~ 240 (878)
...++.++++.|.
T Consensus 171 ~~~l~~l~l~~n~ 183 (478)
T KOG4308|consen 171 NEHLTELDLSLNG 183 (478)
T ss_pred ccchhHHHHHhcc
Confidence 3445555555443
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.89 E-value=34 Score=38.09 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=37.4
Q ss_pred cCCCcceeeeccccceeecccCCCCCcccccccCccEEeecccc-ccccccchhhhc--ccCCcCEEEEeCCc
Q 046577 442 ALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCH-KLKYIFSASMIG--SLKQLQHLDIRDCK 511 (878)
Q Consensus 442 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~-~l~~~~~~~~l~--~l~~L~~L~l~~~~ 511 (878)
+.+.+..+.+++|++..+.... .+....|+|+.|+|++.. .+... +. +. +..-|++|.+.|++
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~s----slsq~apklk~L~LS~N~~~~~~~-~e--l~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALS----SLSQIAPKLKTLDLSHNHSKISSE-SE--LDKLKGLPLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhhhh----HHHHhcchhheeecccchhhhcch-hh--hhhhcCCCHHHeeecCCc
Confidence 5778888888888665442211 112246888888888831 22221 11 22 23457888888887
No 96
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=26.30 E-value=1.1e+02 Score=23.34 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHhcCCCc
Q 046577 34 LKSTAIDVARACGGLPIALTTVAKALRGKSL 64 (878)
Q Consensus 34 ~~~~~~~i~~~c~GlPLai~~lg~~L~~k~~ 64 (878)
+..+--.|++.|+|++=-+-++-|+|++|++
T Consensus 3 ~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkTD 33 (62)
T PF14050_consen 3 FDNMLLSIAQQCGGIEDFLDTFFSFLRRKTD 33 (62)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCc
Confidence 4567788999999999999999999998873
No 97
>COG3899 Predicted ATPase [General function prediction only]
Probab=25.41 E-value=7e+02 Score=30.68 Aligned_cols=116 Identities=16% Similarity=0.193 Sum_probs=81.9
Q ss_pred ccEEccCCChHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCC------ch-hHHHHHHHhcCC
Q 046577 5 DNFLINNLNEEEAGRLFKMMAGDDVENRELKSTAIDVARACGGLPIALTTVAKALRGKS------LH-EWKNSLRELRTP 77 (878)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k~------~~-~W~~~l~~l~~~ 77 (878)
+.+.|.||+..|.-.|-....+.. .....+....|++|.+|.|+-+.=+=..|.... .. .|..=..++..
T Consensus 212 ~~I~L~PL~~~d~~~lV~~~l~~~--~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~- 288 (849)
T COG3899 212 TTITLAPLSRADTNQLVAATLGCT--KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI- 288 (849)
T ss_pred eEEecCcCchhhHHHHHHHHhCCc--ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-
Confidence 689999999999999998888642 223356788999999999999876666665431 11 25432222211
Q ss_pred CCCCcCCchhhHHHHHHHHHhcCCCchhHHHHHHhccCCCCCChhHHHHHHh
Q 046577 78 SMVNFEGVSAETYSSIELSFKYLKGGQLKELFQLCSLMGNSIPTLKLLKYSI 129 (878)
Q Consensus 78 ~~~~~~~~~~~i~~~L~lSy~~L~~~~lk~cFly~~~fp~~i~~~~li~~w~ 129 (878)
....++ +.+.+..--+.||.. -|...-..|++...|+.+.|-..|.
T Consensus 289 ----~~~~~~-vv~~l~~rl~kL~~~-t~~Vl~~AA~iG~~F~l~~La~l~~ 334 (849)
T COG3899 289 ----LATTDA-VVEFLAARLQKLPGT-TREVLKAAACIGNRFDLDTLAALAE 334 (849)
T ss_pred ----chhhHH-HHHHHHHHHhcCCHH-HHHHHHHHHHhCccCCHHHHHHHHh
Confidence 122233 666788889999997 6999999998888887776666653
Done!