Query 046577
Match_columns 878
No_of_seqs 473 out of 4200
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 23:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-39 4.2E-44 390.2 33.7 567 207-842 77-724 (768)
2 1ziw_A TOLL-like receptor 3; i 100.0 5.4E-38 1.8E-42 373.1 38.6 580 193-855 12-618 (680)
3 3rgz_A Protein brassinosteroid 100.0 2.2E-38 7.6E-43 379.3 32.1 578 205-862 98-758 (768)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-37 9.8E-42 366.8 37.4 562 192-835 32-622 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 4E-38 1.4E-42 369.1 28.6 511 207-834 32-557 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.1E-36 3.9E-41 356.7 31.0 173 213-401 18-194 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 6.9E-36 2.4E-40 350.1 35.5 526 210-856 14-555 (606)
8 3t6q_A CD180 antigen; protein- 100.0 4.8E-36 1.6E-40 351.4 31.9 531 194-807 21-558 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-34 8.4E-39 347.9 37.6 525 192-807 11-558 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.9E-34 9.9E-39 347.3 31.6 527 210-834 7-559 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 7E-34 2.4E-38 329.0 30.5 488 213-809 11-510 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 6.1E-34 2.1E-38 331.3 29.0 186 195-397 17-211 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 6.5E-33 2.2E-37 322.6 29.3 502 211-833 11-529 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 5.5E-31 1.9E-35 304.7 31.9 494 228-856 4-507 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 4.7E-30 1.6E-34 302.9 31.4 162 602-781 396-558 (635)
16 2z7x_B TOLL-like receptor 1, v 100.0 4.7E-30 1.6E-34 294.5 30.3 177 603-807 302-479 (520)
17 4eco_A Uncharacterized protein 100.0 2.1E-31 7E-36 311.4 19.1 318 267-664 194-546 (636)
18 4eco_A Uncharacterized protein 100.0 1.1E-30 3.8E-35 305.1 24.2 418 229-774 81-597 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-30 9.7E-35 296.3 26.7 456 210-776 3-480 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 2.2E-30 7.4E-35 306.9 24.0 419 229-775 323-838 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 3.8E-30 1.3E-34 304.9 23.1 111 602-723 727-837 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 9.2E-29 3.1E-33 291.9 30.9 527 218-832 42-577 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-28 8.9E-33 282.3 30.1 462 228-807 30-508 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.2E-28 2.1E-32 279.1 23.4 459 209-777 33-510 (562)
25 1o6v_A Internalin A; bacterial 100.0 2.9E-27 1E-31 266.5 24.8 342 206-696 45-386 (466)
26 1o6v_A Internalin A; bacterial 100.0 1.1E-26 3.8E-31 261.8 27.5 345 256-729 46-390 (466)
27 1jl5_A Outer protein YOPM; leu 100.0 1E-27 3.5E-32 267.4 18.2 406 255-836 10-430 (454)
28 1jl5_A Outer protein YOPM; leu 99.9 4.1E-27 1.4E-31 262.5 18.3 264 228-568 10-287 (454)
29 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-25 4.3E-30 250.7 27.3 309 206-664 41-349 (457)
30 3v47_A TOLL-like receptor 5B a 99.9 2.2E-26 7.5E-31 259.3 21.1 147 212-364 15-167 (455)
31 3o6n_A APL1; leucine-rich repe 99.9 5.6E-26 1.9E-30 250.1 22.0 308 225-640 41-350 (390)
32 3v47_A TOLL-like receptor 5B a 99.9 1.2E-25 4E-30 253.4 25.1 377 192-616 17-408 (455)
33 4fmz_A Internalin; leucine ric 99.9 8.4E-25 2.9E-29 236.8 23.9 304 204-569 41-344 (347)
34 4fmz_A Internalin; leucine ric 99.9 9.2E-25 3.1E-29 236.5 23.7 147 227-397 42-188 (347)
35 3bz5_A Internalin-J, INLJ; leu 99.9 4.4E-25 1.5E-29 246.4 19.9 262 227-618 40-301 (457)
36 2id5_A Lingo-1, leucine rich r 99.9 1.2E-24 4E-29 246.5 23.6 148 211-363 15-164 (477)
37 3o6n_A APL1; leucine-rich repe 99.9 6.9E-25 2.3E-29 241.4 20.5 305 205-616 43-352 (390)
38 2id5_A Lingo-1, leucine rich r 99.9 2.7E-24 9.2E-29 243.6 25.6 155 206-364 31-189 (477)
39 3oja_B Anopheles plasmodium-re 99.9 1.1E-24 3.6E-29 253.3 22.8 307 225-639 47-355 (597)
40 3oja_B Anopheles plasmodium-re 99.9 5E-24 1.7E-28 247.6 20.0 305 205-616 49-358 (597)
41 2a5y_B CED-4; apoptosis; HET: 99.9 2E-25 6.9E-30 254.9 6.1 171 3-187 284-472 (549)
42 2ft3_A Biglycan; proteoglycan, 99.9 4E-23 1.4E-27 221.8 20.1 266 230-569 34-305 (332)
43 1xku_A Decorin; proteoglycan, 99.9 2.9E-22 1E-26 214.9 23.8 267 230-569 32-304 (330)
44 3ogk_B Coronatine-insensitive 99.9 9.8E-24 3.4E-28 246.3 9.8 156 227-395 71-252 (592)
45 3ogk_B Coronatine-insensitive 99.9 3.8E-23 1.3E-27 241.4 10.8 286 227-574 110-422 (592)
46 1xku_A Decorin; proteoglycan, 99.9 9.7E-21 3.3E-25 203.0 24.7 265 206-541 51-328 (330)
47 1ogq_A PGIP-2, polygalacturona 99.9 6.7E-22 2.3E-26 209.7 14.9 253 229-548 50-307 (313)
48 4fcg_A Uncharacterized protein 99.9 1.7E-21 5.8E-26 207.8 17.7 207 255-518 80-295 (328)
49 2z80_A TOLL-like receptor 2, v 99.9 6.9E-22 2.4E-26 214.1 14.2 271 211-542 35-311 (353)
50 1ogq_A PGIP-2, polygalacturona 99.9 1.7E-21 5.7E-26 206.7 16.8 246 207-513 50-304 (313)
51 2ft3_A Biglycan; proteoglycan, 99.9 8.9E-21 3E-25 203.4 21.5 283 208-542 34-330 (332)
52 4fcg_A Uncharacterized protein 99.9 4.5E-21 1.5E-25 204.6 17.7 222 207-511 81-312 (328)
53 3zyj_A Leucine-rich repeat-con 99.9 9.3E-21 3.2E-25 211.7 20.4 244 209-511 45-290 (440)
54 3zyi_A Leucine-rich repeat-con 99.9 1E-20 3.5E-25 212.2 20.1 244 209-511 56-301 (452)
55 1z7x_W Ribonuclease inhibitor; 99.8 5.1E-23 1.7E-27 232.3 0.2 160 229-398 3-182 (461)
56 2p1m_B Transport inhibitor res 99.8 3.3E-22 1.1E-26 233.5 6.4 63 653-725 455-518 (594)
57 2p1m_B Transport inhibitor res 99.8 8.7E-22 3E-26 230.0 9.5 211 251-510 100-324 (594)
58 2z66_A Variable lymphocyte rec 99.8 9.4E-21 3.2E-25 200.8 15.4 243 211-511 11-259 (306)
59 2z80_A TOLL-like receptor 2, v 99.8 1.8E-20 6.1E-25 202.9 15.8 278 227-573 29-316 (353)
60 1z7x_W Ribonuclease inhibitor; 99.8 1.2E-21 4.2E-26 221.0 4.4 269 206-516 2-299 (461)
61 3zyi_A Leucine-rich repeat-con 99.8 9.9E-20 3.4E-24 204.1 19.0 243 231-542 56-300 (452)
62 3g06_A SSPH2 (leucine-rich rep 99.8 2.1E-19 7.1E-24 206.2 21.9 255 208-569 41-295 (622)
63 3zyj_A Leucine-rich repeat-con 99.8 1.2E-19 4.2E-24 202.6 19.4 242 231-541 45-288 (440)
64 3o53_A Protein LRIM1, AGAP0063 99.8 7.9E-21 2.7E-25 202.1 8.4 247 227-550 32-280 (317)
65 3g06_A SSPH2 (leucine-rich rep 99.8 3.2E-19 1.1E-23 204.6 21.6 259 229-617 40-298 (622)
66 2z66_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 192.8 15.7 219 232-511 10-234 (306)
67 1ozn_A Reticulon 4 receptor; N 99.8 1.2E-19 4.1E-24 190.0 15.3 149 210-363 14-165 (285)
68 1ozn_A Reticulon 4 receptor; N 99.8 3.6E-19 1.2E-23 186.4 16.2 197 192-404 18-219 (285)
69 3o53_A Protein LRIM1, AGAP0063 99.8 2.2E-20 7.6E-25 198.6 2.7 264 231-573 12-277 (317)
70 3oja_A Leucine-rich immune mol 99.8 5.1E-19 1.8E-23 199.2 11.6 240 227-543 32-273 (487)
71 2o6q_A Variable lymphocyte rec 99.8 7.8E-18 2.7E-22 174.5 18.7 181 208-404 17-199 (270)
72 1p9a_G Platelet glycoprotein I 99.8 7.2E-18 2.5E-22 176.1 17.3 182 206-405 9-191 (290)
73 1wwl_A Monocyte differentiatio 99.7 3.1E-19 1.1E-23 189.3 4.7 154 229-399 43-214 (312)
74 2z62_A TOLL-like receptor 4, v 99.7 1E-17 3.5E-22 174.4 15.3 173 217-403 17-194 (276)
75 1h6u_A Internalin H; cell adhe 99.7 1.7E-17 5.7E-22 175.3 16.8 193 205-458 39-231 (308)
76 2o6q_A Variable lymphocyte rec 99.7 5.1E-17 1.7E-21 168.3 19.2 192 192-399 23-218 (270)
77 2xwt_C Thyrotropin receptor; s 99.7 1.7E-17 5.7E-22 168.7 14.3 187 197-403 23-222 (239)
78 1h6u_A Internalin H; cell adhe 99.7 3E-17 1E-21 173.3 16.6 124 228-363 40-163 (308)
79 3rfs_A Internalin B, repeat mo 99.7 4.4E-18 1.5E-22 176.5 9.7 152 206-363 40-193 (272)
80 1wwl_A Monocyte differentiatio 99.7 2.9E-18 9.9E-23 181.8 8.2 163 228-404 94-271 (312)
81 2z62_A TOLL-like receptor 4, v 99.7 2.3E-17 7.9E-22 171.7 14.8 212 196-458 18-238 (276)
82 1p9a_G Platelet glycoprotein I 99.7 4.9E-17 1.7E-21 169.8 17.0 153 228-400 9-162 (290)
83 2xwt_C Thyrotropin receptor; s 99.7 2.5E-17 8.4E-22 167.4 14.3 140 219-364 23-169 (239)
84 3sfz_A APAF-1, apoptotic pepti 99.7 2.4E-17 8.4E-22 209.8 17.3 169 2-186 275-452 (1249)
85 3rfs_A Internalin B, repeat mo 99.7 4.1E-17 1.4E-21 169.1 14.0 160 227-404 39-199 (272)
86 3m19_A Variable lymphocyte rec 99.7 1.1E-16 3.9E-21 163.7 16.7 178 208-401 15-194 (251)
87 3oja_A Leucine-rich immune mol 99.7 2.7E-17 9.3E-22 185.1 12.7 222 247-542 22-247 (487)
88 1vt4_I APAF-1 related killer D 99.7 2E-17 6.7E-22 190.8 9.2 142 5-180 285-437 (1221)
89 4ay9_X Follicle-stimulating ho 99.7 1.8E-16 6.2E-21 170.8 15.5 239 211-511 13-257 (350)
90 2ast_B S-phase kinase-associat 99.7 8.1E-17 2.8E-21 173.1 10.1 149 231-396 49-205 (336)
91 4ay9_X Follicle-stimulating ho 99.7 5.9E-16 2E-20 166.8 15.5 102 444-567 154-255 (350)
92 1h6t_A Internalin B; cell adhe 99.7 6.5E-16 2.2E-20 161.5 15.4 175 204-403 43-217 (291)
93 3goz_A Leucine-rich repeat-con 99.6 3.3E-16 1.1E-20 169.8 10.2 142 250-399 16-180 (362)
94 3m19_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 152.3 17.0 168 192-364 21-192 (251)
95 4glp_A Monocyte differentiatio 99.6 4.6E-16 1.6E-20 164.7 9.8 217 208-483 65-303 (310)
96 2ast_B S-phase kinase-associat 99.6 5.3E-16 1.8E-20 166.7 10.0 127 256-396 47-178 (336)
97 2ca6_A RAN GTPase-activating p 99.6 6E-17 2.1E-21 177.5 2.6 162 227-398 30-228 (386)
98 1h6t_A Internalin B; cell adhe 99.6 1.9E-15 6.4E-20 158.0 13.8 171 227-458 44-214 (291)
99 3e6j_A Variable lymphocyte rec 99.6 5.1E-15 1.8E-19 148.7 15.5 151 209-364 21-172 (229)
100 2ca6_A RAN GTPase-activating p 99.6 1.8E-16 6.3E-21 173.6 4.1 143 247-398 24-199 (386)
101 4ezg_A Putative uncharacterize 99.6 6.3E-15 2.2E-19 144.4 14.4 151 205-364 42-194 (197)
102 2o6s_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 147.7 12.1 164 211-397 11-176 (208)
103 2v9t_B SLIT homolog 2 protein 99.6 6E-15 2.1E-19 147.1 13.7 149 211-364 15-165 (220)
104 3goz_A Leucine-rich repeat-con 99.6 6.3E-16 2.2E-20 167.5 6.7 161 228-400 21-210 (362)
105 4ezg_A Putative uncharacterize 99.6 6.4E-15 2.2E-19 144.4 12.9 152 227-399 42-194 (197)
106 2v70_A SLIT-2, SLIT homolog 2 99.6 9.3E-15 3.2E-19 145.7 14.0 151 210-364 14-166 (220)
107 1m9s_A Internalin B; cell inva 99.6 6.9E-15 2.4E-19 168.6 12.9 175 204-403 40-214 (605)
108 1z6t_A APAF-1, apoptotic prote 99.6 1.6E-14 5.6E-19 167.6 16.0 163 5-183 276-449 (591)
109 1m9s_A Internalin B; cell inva 99.6 3.8E-15 1.3E-19 170.7 10.4 150 227-401 41-190 (605)
110 4glp_A Monocyte differentiatio 99.6 8.5E-15 2.9E-19 154.9 12.1 198 207-458 91-308 (310)
111 1xeu_A Internalin C; cellular 99.6 3E-15 1E-19 153.7 8.1 170 208-403 20-189 (263)
112 3cvr_A Invasion plasmid antige 99.5 4.6E-14 1.6E-18 159.8 16.8 160 208-405 60-226 (571)
113 2v9t_B SLIT homolog 2 protein 99.5 2.9E-14 1E-18 142.1 13.4 150 232-399 14-165 (220)
114 2xot_A Amphoterin-induced prot 99.5 2.1E-14 7.1E-19 155.3 12.2 173 210-398 21-201 (361)
115 1xeu_A Internalin C; cellular 99.5 6.4E-15 2.2E-19 151.3 7.6 170 227-458 17-186 (263)
116 3cvr_A Invasion plasmid antige 99.5 5.2E-14 1.8E-18 159.4 15.1 139 229-403 59-197 (571)
117 2xot_A Amphoterin-induced prot 99.5 3.8E-14 1.3E-18 153.2 13.4 169 191-364 24-202 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.5 6.6E-14 2.2E-18 139.6 14.0 150 232-399 14-166 (220)
119 2o6s_A Variable lymphocyte rec 99.5 6.7E-14 2.3E-18 138.5 12.4 159 194-364 16-178 (208)
120 3e6j_A Variable lymphocyte rec 99.5 1.4E-13 4.7E-18 138.2 13.8 151 231-400 21-173 (229)
121 2ell_A Acidic leucine-rich nuc 99.5 1.9E-13 6.4E-18 130.1 12.1 133 256-402 24-163 (168)
122 2ell_A Acidic leucine-rich nuc 99.5 2E-13 6.8E-18 129.9 10.5 133 228-364 23-160 (168)
123 2je0_A Acidic leucine-rich nuc 99.4 2.1E-13 7E-18 126.9 8.9 126 229-359 17-148 (149)
124 2wfh_A SLIT homolog 2 protein 99.4 1.1E-12 3.7E-17 127.6 13.5 126 232-364 13-139 (193)
125 1w8a_A SLIT protein; signaling 99.4 1E-12 3.4E-17 127.9 11.8 126 232-364 11-139 (192)
126 4b8c_D Glucose-repressible alc 99.4 4.9E-13 1.7E-17 157.4 11.0 152 206-364 172-329 (727)
127 1a9n_A U2A', U2A'; complex (nu 99.4 3.1E-13 1.1E-17 129.6 7.4 133 225-364 15-153 (176)
128 2je0_A Acidic leucine-rich nuc 99.4 1.2E-12 4.1E-17 121.7 9.6 125 206-335 16-149 (149)
129 1a9n_A U2A', U2A'; complex (nu 99.3 2E-12 6.9E-17 123.9 9.4 135 252-398 15-152 (176)
130 2wfh_A SLIT homolog 2 protein 99.3 6.6E-12 2.3E-16 122.0 12.8 123 210-337 13-137 (193)
131 1w8a_A SLIT protein; signaling 99.3 3.3E-12 1.1E-16 124.2 10.5 127 259-399 11-139 (192)
132 4b8c_D Glucose-repressible alc 99.3 7E-13 2.4E-17 156.1 4.7 132 227-364 222-354 (727)
133 2o6r_A Variable lymphocyte rec 99.3 2E-11 6.7E-16 117.1 13.0 108 256-364 28-137 (177)
134 2o6r_A Variable lymphocyte rec 99.3 2.1E-11 7.1E-16 117.0 12.7 124 210-337 10-135 (177)
135 1dce_A Protein (RAB geranylger 99.3 2E-11 6.7E-16 139.2 12.8 125 256-393 441-567 (567)
136 1dce_A Protein (RAB geranylger 99.2 2.9E-11 9.9E-16 137.8 12.9 188 207-413 349-565 (567)
137 1ds9_A Outer arm dynein; leuci 99.2 9.2E-13 3.1E-17 129.0 -1.6 140 247-392 40-180 (198)
138 2r9u_A Variable lymphocyte rec 99.2 8.3E-11 2.9E-15 111.9 11.0 103 259-364 15-118 (174)
139 3g39_A Variable lymphocyte rec 99.2 9.2E-11 3.1E-15 111.3 10.8 104 258-364 11-115 (170)
140 1ds9_A Outer arm dynein; leuci 99.1 1.3E-12 4.4E-17 128.0 -3.8 132 218-357 36-180 (198)
141 3sb4_A Hypothetical leucine ri 99.1 3.5E-10 1.2E-14 120.4 12.2 98 207-312 49-157 (329)
142 3sb4_A Hypothetical leucine ri 99.1 5.8E-10 2E-14 118.7 12.0 265 255-565 48-328 (329)
143 2r9u_A Variable lymphocyte rec 99.1 4.6E-10 1.6E-14 106.8 9.9 106 232-344 15-122 (174)
144 3g39_A Variable lymphocyte rec 99.0 5.3E-10 1.8E-14 106.0 10.1 104 231-341 11-116 (170)
145 4fdw_A Leucine rich hypothetic 99.0 1.7E-08 5.8E-13 109.6 21.2 261 228-567 112-379 (401)
146 4fdw_A Leucine rich hypothetic 98.9 1.8E-08 6.2E-13 109.4 18.3 226 218-511 123-356 (401)
147 3un9_A NLR family member X1; l 98.8 9.1E-10 3.1E-14 118.5 3.6 135 256-398 101-251 (372)
148 2ifg_A High affinity nerve gro 98.8 1.1E-08 3.9E-13 109.7 10.5 101 261-364 13-116 (347)
149 2ifg_A High affinity nerve gro 98.7 3.5E-08 1.2E-12 105.8 10.0 100 233-337 12-114 (347)
150 3un9_A NLR family member X1; l 98.6 8.5E-09 2.9E-13 110.9 2.5 137 255-399 71-224 (372)
151 4fs7_A Uncharacterized protein 98.6 9.3E-07 3.2E-11 96.4 17.8 36 650-693 339-374 (394)
152 4fs7_A Uncharacterized protein 98.5 4E-06 1.4E-10 91.3 19.2 133 219-361 59-195 (394)
153 3e4g_A ATP synthase subunit S, 98.5 8.2E-08 2.8E-12 89.2 4.7 91 713-811 61-154 (176)
154 3e4g_A ATP synthase subunit S, 98.4 1.5E-07 5E-12 87.5 3.6 69 710-779 82-154 (176)
155 2ra8_A Uncharacterized protein 98.3 1.2E-06 4E-11 93.3 8.8 160 227-398 137-319 (362)
156 4gt6_A Cell surface protein; l 98.1 0.00014 4.7E-09 79.1 19.4 36 322-359 133-168 (394)
157 4gt6_A Cell surface protein; l 98.1 0.00027 9.4E-09 76.7 21.7 310 219-614 51-368 (394)
158 1io0_A Tropomodulin; LRR prote 98.0 3.9E-06 1.3E-10 80.3 5.8 112 252-364 32-164 (185)
159 2ra8_A Uncharacterized protein 97.9 1.4E-05 4.9E-10 84.8 7.7 130 227-364 170-320 (362)
160 1io0_A Tropomodulin; LRR prote 97.8 1.2E-05 4.2E-10 76.8 4.9 119 272-399 29-164 (185)
161 3rw6_A Nuclear RNA export fact 97.6 1.2E-05 4.2E-10 80.7 1.2 15 255-269 169-183 (267)
162 3rw6_A Nuclear RNA export fact 97.6 6.6E-05 2.3E-09 75.4 6.3 97 261-358 148-258 (267)
163 4h09_A Hypothetical leucine ri 97.3 0.004 1.4E-07 67.0 16.6 103 442-565 238-340 (379)
164 4h09_A Hypothetical leucine ri 96.3 0.015 5E-07 62.5 10.7 107 249-359 210-318 (379)
165 3rfe_A Platelet glycoprotein I 94.3 0.059 2E-06 47.3 5.8 55 307-364 12-68 (130)
166 3rfe_A Platelet glycoprotein I 94.3 0.064 2.2E-06 47.1 6.0 13 281-293 33-45 (130)
167 1pgv_A TMD-1, tropomodulin TMD 94.2 0.055 1.9E-06 51.0 5.8 83 253-335 38-135 (197)
168 2qen_A Walker-type ATPase; unk 93.8 0.55 1.9E-05 49.2 13.6 149 5-178 196-347 (350)
169 1pgv_A TMD-1, tropomodulin TMD 93.5 0.15 5E-06 48.1 7.2 110 228-337 40-168 (197)
170 2fna_A Conserved hypothetical 92.7 0.58 2E-05 49.1 11.6 146 5-178 202-355 (357)
171 1w5s_A Origin recognition comp 88.4 0.77 2.6E-05 49.4 7.6 136 7-162 210-370 (412)
172 1hqc_A RUVB; extended AAA-ATPa 78.4 1.9 6.4E-05 44.5 5.0 54 5-59 161-214 (324)
173 1njg_A DNA polymerase III subu 65.4 11 0.00037 36.3 6.9 55 5-60 178-232 (250)
174 2qby_B CDC6 homolog 3, cell di 47.7 57 0.002 33.9 9.3 133 5-162 190-338 (384)
175 2vda_B Maltoporin; sugar trans 35.8 23 0.00078 19.9 1.9 18 45-62 8-25 (28)
176 1fnn_A CDC6P, cell division co 31.5 1.1E+02 0.0039 31.5 8.5 158 6-186 187-387 (389)
177 1sxj_B Activator 1 37 kDa subu 26.9 89 0.0031 31.3 6.4 52 6-59 160-213 (323)
178 2lz0_A Uncharacterized protein 23.9 69 0.0024 25.9 3.8 37 322-360 16-52 (100)
179 2v1u_A Cell division control p 21.1 2.5E+02 0.0085 28.7 8.7 134 5-162 194-350 (387)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-39 Score=390.17 Aligned_cols=567 Identities=14% Similarity=0.048 Sum_probs=333.5
Q ss_pred ccceEEEEeccccccCCCCC-CCCCccEEEcCCCCCccccCcCh-hhhhCCCCCcEEEeeCCCCC-CCcccc-ccccCcc
Q 046577 207 KKCYAISIRYCCIHELPNAL-ECPQLEFLCMSPEDSSLEVSIPE-NFFVGMRKLKVVDFTGMQLF-SLPSSI-DLLVKLK 282 (878)
Q Consensus 207 ~~~~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~-~~~~~l~~Lr~L~L~~~~i~-~lp~~~-~~l~~L~ 282 (878)
+.++.++++.+.+..++..+ .+++|++|++++|..... +|. ..++++++|++|++++|.+. .+|..+ .++++|+
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP--VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE--GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc--CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 34455555555554454554 677777777777765433 554 12577777788887777766 344443 6777777
Q ss_pred EEEecCccccccchhh---hcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcc
Q 046577 283 TLCLDESILRDIDIAI---IGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMC 359 (878)
Q Consensus 283 ~L~l~~~~~~~~~p~~---i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 359 (878)
+|++++|.+.+..|.. ++++++|++|++++|.+..... ++++++|++|++++|. +....+. ++++++|++|+++
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDIS 231 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECC
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCc-CCCCCcc-cccCCCCCEEECc
Confidence 7777777777755555 6777777777777776664332 3677777778777777 4443334 7777778888877
Q ss_pred cCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccc
Q 046577 360 NCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNE 439 (878)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~ 439 (878)
+|.+. +..+..++.+++|++|++++|..........+++|+.++++.+.+....... +..
T Consensus 232 ~n~l~-----------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~--------~~~- 291 (768)
T 3rgz_A 232 GNKLS-----------GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDF--------LSG- 291 (768)
T ss_dssp SSCCC-----------SCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCC--------SCT-
T ss_pred CCcCC-----------CcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHH--------HHh-
Confidence 77665 3345667777777777777776543222225566666666655544221110 001
Q ss_pred cccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhc
Q 046577 440 KVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISE 519 (878)
Q Consensus 440 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 519 (878)
.+++|++|++++|.++... |.+ +..+++|++|++++| .+....|...++.+++|++|++++|.....++..
T Consensus 292 --~~~~L~~L~Ls~n~l~~~~-----p~~-~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 292 --ACDTLTGLDLSGNHFYGAV-----PPF-FGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp --TCTTCSEEECCSSEEEECC-----CGG-GGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred --hcCcCCEEECcCCcCCCcc-----chH-HhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 2366667777666555321 111 124566666666663 3332234344566666666666666521122221
Q ss_pred ccCCCCCCcccCc-ccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhh--hhhccccCCCCCCCCCC-CC
Q 046577 520 NRADQVIPYFVFP-QLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAA--DLLQKNENDQLGIPVQQ-PP 595 (878)
Q Consensus 520 ~~~~~~~~~~~~p-~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~--~~~~~~~~~~~~~~~~~-~~ 595 (878)
.. .++ +|++|+++++.--..++.......+++|++|++++|.--..+|. ..++.++.+........ .+
T Consensus 363 l~--------~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 363 LT--------NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp HH--------HHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred HH--------hhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 11 122 55555555532111111111111134455555554422112221 01111111111110000 00
Q ss_pred CCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCC-ccchhHHHHHcCCCceEEEeccCccceeeccc
Q 046577 596 LPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSA-GFPIWNVLERFHNLEILTLFNFSFHEEVFSME 674 (878)
Q Consensus 596 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 674 (878)
......+++|+.|++++|......+..+. .+++|++|++++|.+. .+|.+ +.++++|+.|++++|.-...+
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~~---- 506 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNNRLTGEI---- 506 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCCSCC----
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecCCcccCcCCHH--HhcCCCCCEEEccCCccCCcC----
Confidence 12235678888888888886655544432 3688889988665555 66665 888889999999877543333
Q ss_pred cccccccccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccc-------------------------
Q 046577 675 GCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLIL------------------------- 729 (878)
Q Consensus 675 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l------------------------- 729 (878)
|..++.+++|+.|++++|.-...++.. ...+++|+.|++++|+....+
T Consensus 507 ---p~~~~~l~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~ 579 (768)
T 3rgz_A 507 ---PKWIGRLENLAILKLSNNSFSGNIPAE----LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579 (768)
T ss_dssp ---CGGGGGCTTCCEEECCSSCCEEECCGG----GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEE
T ss_pred ---ChHHhcCCCCCEEECCCCcccCcCCHH----HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccc
Confidence 455668889999999888654455432 256788999999886433222
Q ss_pred --------------------------------------------cCCCcccccCccEEEecCCCCcccccchhHHhhccc
Q 046577 730 --------------------------------------------LPSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVR 765 (878)
Q Consensus 730 --------------------------------------------~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 765 (878)
.|..+..+++|+.|+++++.-...+ |..+.++++
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i--p~~l~~l~~ 657 (768)
T 3rgz_A 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI--PKEIGSMPY 657 (768)
T ss_dssp CCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC--CGGGGGCTT
T ss_pred cccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC--CHHHhcccc
Confidence 1112344677888998877433344 456788899
Q ss_pred ccEEEEcccccccceecccccccccceeeeccccceecccCCCcceeeccCceeecCCcceeecccCCCccccCCCC
Q 046577 766 LVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFPSLQELGVICCPKMKIFTTGE 842 (878)
Q Consensus 766 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp~~~ 842 (878)
|+.|++++|.-...+|..... +++|+.|+++++.--..+|... ..+++|++|++++|+--..+|.++
T Consensus 658 L~~L~Ls~N~l~g~ip~~l~~--------L~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 658 LFILNLGHNDISGSIPDEVGD--------LRGLNILDLSSNKLDGRIPQAM--SALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGG--------CTTCCEEECCSSCCEECCCGGG--GGCCCCSEEECCSSEEEEECCSSS
T ss_pred CCEEeCcCCccCCCCChHHhC--------CCCCCEEECCCCcccCcCChHH--hCCCCCCEEECcCCcccccCCCch
Confidence 999999998544466665554 8899999999876555666543 268899999999986555566543
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.4e-38 Score=373.06 Aligned_cols=580 Identities=15% Similarity=0.121 Sum_probs=363.4
Q ss_pred eCCCCCCCCCccccccceEEEEeccccccCCCC-C-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCC
Q 046577 193 ENEDVWELPDKESLKKCYAISIRYCCIHELPNA-L-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFS 270 (878)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~ 270 (878)
.+..+..+|.. ..+++++|++++|.+..++.. + .+++|++|++++|.... +++..|.++++|++|++++|.++.
T Consensus 12 s~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 12 SHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK---LEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp CSSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC---CCTTHHHHCTTCCEEECCSSCCCC
T ss_pred CCCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc---cCHHHHhcccCcCEEECCCCccCc
Confidence 34445555532 346777888887777777653 2 67778888887776654 555556778888888888887777
Q ss_pred Ccc-ccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCccc-chhhcCCCCccEEecCCCCCCCccCcchhc
Q 046577 271 LPS-SIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQL-PKALGQLTKLRLLDLTDCFHLKVIAPNVIS 348 (878)
Q Consensus 271 lp~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~~~ 348 (878)
+|. .|+++++|++|++++|.+.+..|..|+++++|++|++++|.+... |..++++++|++|++++|. +..++...++
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 166 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELD 166 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHG
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhh
Confidence 765 577778888888888877774456777788888888888777654 4447777888888887776 6666654333
Q ss_pred --CCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCC-----chhhhcccccccccccCcc
Q 046577 349 --SLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLP-----AGFLARKLERQVSQEESTT 421 (878)
Q Consensus 349 --~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~~L~~l~l~~~~l~ 421 (878)
.+++|++|++++|.+. +..+..+..+.+|+.|.+.++...... ......+|+.++++++.+.
T Consensus 167 ~~~~~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~ 235 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIK-----------EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235 (680)
T ss_dssp GGTTCEESEEECTTCCCC-----------CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred ccccccccEEECCCCccc-----------ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence 4577888887777654 233455666677777776655432100 0011245555655555544
Q ss_pred cccccccccccccccccccccC--CCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhccc
Q 046577 422 TYCSSEITLDTSTLLFNEKVAL--PNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSL 499 (878)
Q Consensus 422 ~~~~~~~~~~~~~~~l~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l 499 (878)
..... .+. .+ ++|++|++++|.++.+.... +..+++|++|++++ +.++...+ ..++.+
T Consensus 236 ~~~~~---------~~~---~l~~~~L~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~L~~-n~l~~~~~-~~~~~l 295 (680)
T 1ziw_A 236 TTSNT---------TFL---GLKWTNLTMLDLSYNNLNVVGNDS------FAWLPQLEYFFLEY-NNIQHLFS-HSLHGL 295 (680)
T ss_dssp EECTT---------TTG---GGGGSCCCEEECTTSCCCEECTTT------TTTCTTCCEEECCS-CCBSEECT-TTTTTC
T ss_pred ccChh---------Hhh---ccCcCCCCEEECCCCCcCccCccc------ccCcccccEeeCCC-CccCccCh-hhhcCC
Confidence 43322 111 23 45889999888776542222 22578899999988 45665533 447788
Q ss_pred CCcCEEEEeCCchhHHHhhcccC-CCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCC-Cccchhhh
Q 046577 500 KQLQHLDIRDCKDLQEIISENRA-DQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCD-KLKIFAAD 577 (878)
Q Consensus 500 ~~L~~L~l~~~~~l~~~~~~~~~-~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~-~L~~lp~~ 577 (878)
++|++|+++++..-..+...... ........+++|++|+++++ .++.+.... ...+++|++|++++|. .+..++..
T Consensus 296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~l~~~ 373 (680)
T 1ziw_A 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNE 373 (680)
T ss_dssp TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTT-TTTCTTCCEEECTTCBSCCCEECTT
T ss_pred CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhH-hccccCCcEEECCCCchhhhhcchh
Confidence 89999998876422111100000 00001114788888888884 455544332 3457889999988864 23333211
Q ss_pred hhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCC-ccchhHHHHHcCCC
Q 046577 578 LLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSA-GFPIWNVLERFHNL 656 (878)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~l~~l~~L 656 (878)
.. .....++|+.|++++|.+..+.+..+. .+++|+.|++++|.+. .++.. .+..+++|
T Consensus 374 ~f------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~~l~~L 432 (680)
T 1ziw_A 374 TF------------------VSLAHSPLHILNLTKNKISKIESDAFS--WLGHLEVLDLGLNEIGQELTGQ-EWRGLENI 432 (680)
T ss_dssp TT------------------GGGTTSCCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCEEECCSG-GGTTCTTC
T ss_pred hh------------------cccccCcCceEECCCCCCCeEChhhhh--CCCCCCEEeCCCCcCccccCcc-cccCcccc
Confidence 00 001235788888888887665554443 3688888888666654 45543 47778888
Q ss_pred ceEEEeccCccceeeccccccccccccccccceeecccccc--cccccccCCCCCCcccceeeEEeecccccccccCCCc
Q 046577 657 EILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYH--LKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSS 734 (878)
Q Consensus 657 ~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~--L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 734 (878)
+.|++++|. +..+. +..+..+++|+.|+++++.- +..++. ....+++|++|++++ +.++.+.+..+
T Consensus 433 ~~L~Ls~n~-l~~~~------~~~~~~~~~L~~L~l~~n~l~~~~~~p~----~~~~l~~L~~L~Ls~-N~l~~i~~~~~ 500 (680)
T 1ziw_A 433 FEIYLSYNK-YLQLT------RNSFALVPSLQRLMLRRVALKNVDSSPS----PFQPLRNLTILDLSN-NNIANINDDML 500 (680)
T ss_dssp CEEECCSCS-EEECC------TTTTTTCTTCCEEECTTSCCBCTTCSSC----TTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred cEEecCCCC-cceeC------hhhhhcCcccccchhccccccccccCCc----ccccCCCCCEEECCC-CCCCcCChhhh
Confidence 888888664 33332 33456778888888877542 112221 125678888888888 45777656667
Q ss_pred ccccCccEEEecCCCCcccccc-------hhHHhhcccccEEEEcccccccceecccccccccceeeeccccceecccCC
Q 046577 735 VSFGNLTKLVASGCKELMHLVT-------SSTAKTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLD 807 (878)
Q Consensus 735 ~~l~~L~~L~l~~c~~l~~l~~-------~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 807 (878)
..+++|++|+++++ .++.++. ...+.++++|++|++++| .++.++..... .+++|+.|++++ .
T Consensus 501 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~-------~l~~L~~L~Ls~-N 570 (680)
T 1ziw_A 501 EGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFK-------DLFELKIIDLGL-N 570 (680)
T ss_dssp TTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTT-------TCTTCCEEECCS-S
T ss_pred ccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcc-------cccCcceeECCC-C
Confidence 78888888888776 4554421 123567788888888886 66677664322 278888888866 4
Q ss_pred CcceeeccCceeecCCcceeecccCCCccccCCCCC--CCCCceEEEeec
Q 046577 808 SLTSFCSANYTFEFPSLQELGVICCPKMKIFTTGES--ITPPGVYVWYGE 855 (878)
Q Consensus 808 ~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp~~~~--~~p~L~~l~~~~ 855 (878)
+++.++... ...+++|++|++++| +++.++.... .+++|+.+.+.+
T Consensus 571 ~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 571 NLNTLPASV-FNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp CCCCCCTTT-TTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred CCCcCCHhH-hCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccC
Confidence 677777654 235788888888886 6666654422 357788888774
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-38 Score=379.32 Aligned_cols=578 Identities=16% Similarity=0.115 Sum_probs=351.2
Q ss_pred ccccceEEEEecccccc-CCC--CC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccc---cc
Q 046577 205 SLKKCYAISIRYCCIHE-LPN--AL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSS---ID 276 (878)
Q Consensus 205 ~~~~~~~L~l~~~~~~~-l~~--~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~---~~ 276 (878)
.++++++|++++|.+.. +|. .+ .+++|++|++++|..... +|..++.++++|++|++++|.+... |.. ++
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP--GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175 (768)
T ss_dssp CCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC--SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred cCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc--CCHHHhccCCCCCEEECCCCccCCcCChhhhhhc
Confidence 45678888888887753 444 33 788888888888866543 6665557788888888888887744 444 67
Q ss_pred cccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCC-ccCcchhcCCccccE
Q 046577 277 LLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLK-VIAPNVISSLIRLEE 355 (878)
Q Consensus 277 ~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~ 355 (878)
++++|++|++++|.+.+..| +..+++|++|++++|.+...++.++++++|++|++++|. +. .+|.. ++++++|++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~-l~~l~~L~~ 251 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK-LSGDFSRA-ISTCTELKL 251 (768)
T ss_dssp CCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC-CCSCHHHH-TTTCSSCCE
T ss_pred cCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc-CCCcccHH-HhcCCCCCE
Confidence 78888888888888776333 377888888888888777543347888888888888887 44 44444 788888888
Q ss_pred EEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCC-cCCchh-h-hcccccccccccCccccccccccccc
Q 046577 356 LYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNES-MLPAGF-L-ARKLERQVSQEESTTTYCSSEITLDT 432 (878)
Q Consensus 356 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~-~~~L~~l~l~~~~l~~~~~~~~~~~~ 432 (878)
|++++|.+. +..+. . .+++|++|++++|... .+|..+ . +++|+.++++.+.+......
T Consensus 252 L~Ls~n~l~-----------~~~~~-~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~------ 312 (768)
T 3rgz_A 252 LNISSNQFV-----------GPIPP-L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP------ 312 (768)
T ss_dssp EECCSSCCE-----------ESCCC-C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG------
T ss_pred EECCCCccc-----------CccCc-c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch------
Confidence 888887765 11111 1 5677778877777654 555554 2 36777777766655432221
Q ss_pred ccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccC-CcCEEEEeCCc
Q 046577 433 STLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLK-QLQHLDIRDCK 511 (878)
Q Consensus 433 ~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~ 511 (878)
.+. .+++|++|++++|.++.. + |...+..+++|++|++++| .++...|.. +..++ +|++|++++|.
T Consensus 313 ---~~~---~l~~L~~L~L~~n~l~~~----i-p~~~l~~l~~L~~L~Ls~n-~l~~~~p~~-l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 313 ---FFG---SCSLLESLALSSNNFSGE----L-PMDTLLKMRGLKVLDLSFN-EFSGELPES-LTNLSASLLTLDLSSNN 379 (768)
T ss_dssp ---GGG---GCTTCCEEECCSSEEEEE----C-CHHHHTTCTTCCEEECCSS-EEEECCCTT-HHHHTTTCSEEECCSSE
T ss_pred ---HHh---cCCCccEEECCCCcccCc----C-CHHHHhcCCCCCEEeCcCC-ccCccccHH-HHhhhcCCcEEEccCCC
Confidence 122 466666666666654411 1 1111113566666666663 333222222 34444 56666666655
Q ss_pred hhHHHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhh--hhhccccCCCCCC
Q 046577 512 DLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAA--DLLQKNENDQLGI 589 (878)
Q Consensus 512 ~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~--~~~~~~~~~~~~~ 589 (878)
....++..... ..+++|++|++++| .++..... ....+++|+.|++++|.--..+|. ..++.++.+....
T Consensus 380 l~~~~~~~~~~------~~~~~L~~L~L~~n-~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 380 FSGPILPNLCQ------NPKNTLQELYLQNN-GFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEEECCTTTTC------STTCCCCEEECCSS-EEEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred cCCCcChhhhh------cccCCccEEECCCC-ccccccCH-HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 21111111100 01445555555553 22211111 122345555555555421111211 1111222111111
Q ss_pred CCCC-CCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCC-ccchhHHHHHcCCCceEEEeccCcc
Q 046577 590 PVQQ-PPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSA-GFPIWNVLERFHNLEILTLFNFSFH 667 (878)
Q Consensus 590 ~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~c~~l 667 (878)
.... .+......+++|++|++++|......+..+ ..+++|++|++++|.+. .+|.+ ++.+++|+.|++++|.-.
T Consensus 452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFS 527 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCE
T ss_pred CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCcCChH--HhcCCCCCEEECCCCccc
Confidence 1111 011223557888888888888765554443 34688888888655555 67776 788888888888877543
Q ss_pred ceeeccccccccccccccccceeecccccccccccccC------------------------------------------
Q 046577 668 EEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQD------------------------------------------ 705 (878)
Q Consensus 668 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~------------------------------------------ 705 (878)
..+ |..+..+++|+.|++++|+-...++...
T Consensus 528 ~~~-------p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 528 GNI-------PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp EEC-------CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CcC-------CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 333 4456678888888888765432332211
Q ss_pred ------------------------CCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHHh
Q 046577 706 ------------------------SKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAK 761 (878)
Q Consensus 706 ------------------------~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 761 (878)
......+++|+.|++++ +.++...|..++.+++|+.|+++++.-...+ |..+.
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i--p~~l~ 677 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY-NMLSGYIPKEIGSMPYLFILNLGHNDISGSI--PDEVG 677 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS-SCCBSCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGG
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcC-CcccccCCHHHhccccCCEEeCcCCccCCCC--ChHHh
Confidence 00123467899999999 5566555888999999999999987544455 56788
Q ss_pred hcccccEEEEcccccccceecccccccccceeeeccccceecccCCCcceeeccCceeecCCcceeecccCCCccccCCC
Q 046577 762 TLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFPSLQELGVICCPKMKIFTTG 841 (878)
Q Consensus 762 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp~~ 841 (878)
.+++|+.|++++|.-...+|..... +++|++|++++++--..+|..+ ++.++....+.++|.+...|..
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~--------l~~L~~L~ls~N~l~g~iP~~~---~~~~~~~~~~~gN~~Lcg~~l~ 746 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSA--------LTMLTEIDLSNNNLSGPIPEMG---QFETFPPAKFLNNPGLCGYPLP 746 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGG--------CCCCSEEECCSSEEEEECCSSS---SGGGSCGGGGCSCTEEESTTSC
T ss_pred CCCCCCEEECCCCcccCcCChHHhC--------CCCCCEEECcCCcccccCCCch---hhccCCHHHhcCCchhcCCCCc
Confidence 9999999999998544566665554 8999999999987667788776 5677778888999988765522
Q ss_pred CCCCCCceEEEeeccCCcccc
Q 046577 842 ESITPPGVYVWYGETADQRCW 862 (878)
Q Consensus 842 ~~~~p~L~~l~~~~~~~~w~~ 862 (878)
-|-.+.+++|+.
T Consensus 747 ---------~C~~~~~~~~~~ 758 (768)
T 3rgz_A 747 ---------RCDPSNADGYAH 758 (768)
T ss_dssp ---------CCCSCC------
T ss_pred ---------CCCCCccCCCCC
Confidence 244567888876
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-37 Score=366.84 Aligned_cols=562 Identities=17% Similarity=0.151 Sum_probs=397.8
Q ss_pred eeCCCCCCCCC--ccccccceEEEEeccccccCCCCC--CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCC
Q 046577 192 VENEDVWELPD--KESLKKCYAISIRYCCIHELPNAL--ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQ 267 (878)
Q Consensus 192 ~~~~~~~~~~~--~~~~~~~~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~ 267 (878)
+.+..+...+. ....+++++|++++|.+..++... .+++|++|++++|.... +|...|.++++|++|++++|.
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ---LSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSC
T ss_pred CCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc---cChhhhccCCCCCEEECCCCc
Confidence 44444555543 345678999999999998876543 79999999999998765 888778999999999999999
Q ss_pred CCCCc-cccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-h--cCCCCccEEecCCCCCCCccC
Q 046577 268 LFSLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-L--GQLTKLRLLDLTDCFHLKVIA 343 (878)
Q Consensus 268 i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i--~~L~~L~~L~l~~~~~l~~~~ 343 (878)
+..+| ..|+++++|++|++++|.+.+..|..++++++|++|++++|.++.++.. + ..+++|++|++++|. +..++
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~ 187 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFS 187 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBC
T ss_pred cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccC
Confidence 99885 6799999999999999999987788899999999999999999877654 3 356899999999997 78877
Q ss_pred cchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCch-h-hh--cccccccccccC
Q 046577 344 PNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAG-F-LA--RKLERQVSQEES 419 (878)
Q Consensus 344 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~--~~L~~l~l~~~~ 419 (878)
+..++.+++|+.|++.++.+..... ......+ ..++|+.|+++++.....+.. + .+ ++|+.++++.+.
T Consensus 188 ~~~~~~l~~L~~L~l~~~~l~~~~~-------~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 188 PGCFHAIGRLFGLFLNNVQLGPSLT-------EKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TTGGGGSSEECEEECTTCCCHHHHH-------HHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred hhhhhhhhhhhhhhccccccChhhH-------HHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 7778999999999999887652211 0111222 357899999998886654433 2 33 348888887777
Q ss_pred cccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccc-----ccc--c
Q 046577 420 TTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLK-----YIF--S 492 (878)
Q Consensus 420 l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~-----~~~--~ 492 (878)
+...... .+. .+++|++|++++|.++.+.... +..+++|+.|+++++..-. .++ .
T Consensus 260 l~~~~~~---------~~~---~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 260 LNVVGND---------SFA---WLPQLEYFFLEYNNIQHLFSHS------LHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp CCEECTT---------TTT---TCTTCCEEECCSCCBSEECTTT------TTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred cCccCcc---------ccc---CcccccEeeCCCCccCccChhh------hcCCCCccEEeccchhhhcccccccccccC
Confidence 6654332 122 6889999999999877653222 2258899999998743211 110 1
Q ss_pred hhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceecccccc-ccccccCCCCc-CCCCCccEEEEccCCC
Q 046577 493 ASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLP-KLRCLYPGMHT-PEWLALEMLFVYRCDK 570 (878)
Q Consensus 493 ~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~-~L~~~~~~~~~-~~~~~L~~L~l~~C~~ 570 (878)
...++.+++|++|++++|. +..++..... .+++|++|+++++. .+..++..... ...++|+.|++++|.
T Consensus 322 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-------~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~- 392 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDND-IPGIKSNMFT-------GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK- 392 (680)
T ss_dssp TTTTTTCTTCCEEECCSCC-BCCCCTTTTT-------TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-
T ss_pred hhhcccCCCCCEEECCCCc-cCCCChhHhc-------cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-
Confidence 1236788999999999997 5544433222 48899999998853 23333222111 123689999999864
Q ss_pred ccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHH
Q 046577 571 LKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVL 650 (878)
Q Consensus 571 L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 650 (878)
+..++. .....+++|+.|++++|......+.. ....+++|++|++++|.+..++.. .+
T Consensus 393 l~~~~~--------------------~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~-~~ 450 (680)
T 1ziw_A 393 ISKIES--------------------DAFSWLGHLEVLDLGLNEIGQELTGQ-EWRGLENIFEIYLSYNKYLQLTRN-SF 450 (680)
T ss_dssp CCEECT--------------------TTTTTCTTCCEEECCSSCCEEECCSG-GGTTCTTCCEEECCSCSEEECCTT-TT
T ss_pred CCeECh--------------------hhhhCCCCCCEEeCCCCcCccccCcc-cccCcccccEEecCCCCcceeChh-hh
Confidence 444421 11256788999999998865433211 123468899999977776666554 57
Q ss_pred HHcCCCceEEEeccCccceeeccccccccccccccccceeecccccccccccccCCCCCCcccceeeEEeeccccccccc
Q 046577 651 ERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILL 730 (878)
Q Consensus 651 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 730 (878)
..+++|+.|++++|. +..+ +..|..+..+++|+.|+++++. ++.++...+ ..+++|++|++++ +.++.+.
T Consensus 451 ~~~~~L~~L~l~~n~-l~~~----~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~---~~l~~L~~L~Ls~-N~l~~~~ 520 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVA-LKNV----DSSPSPFQPLRNLTILDLSNNN-IANINDDML---EGLEKLEILDLQH-NNLARLW 520 (680)
T ss_dssp TTCTTCCEEECTTSC-CBCT----TCSSCTTTTCTTCCEEECCSSC-CCCCCTTTT---TTCTTCCEEECCS-SCCGGGG
T ss_pred hcCcccccchhcccc-cccc----ccCCcccccCCCCCEEECCCCC-CCcCChhhh---ccccccCEEeCCC-CCccccc
Confidence 788899999998664 2211 1124556788899999998864 555543322 5678899999998 4555542
Q ss_pred C--------CCcccccCccEEEecCCCCcccccchhHHhhcccccEEEEcccccccceecccccccccceeeecccccee
Q 046577 731 P--------SSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLE 802 (878)
Q Consensus 731 ~--------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~ 802 (878)
+ ..+..+++|+.|+++++ .++.++ +..+.++++|+.|+++++ .++.++..... .+++|++|+
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~-------~l~~L~~L~ 590 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESN-GFDEIP-VEVFKDLFELKIIDLGLN-NLNTLPASVFN-------NQVSLKSLN 590 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCTTTTT-------TCTTCCEEE
T ss_pred hhhccCCcchhhcCCCCCCEEECCCC-CCCCCC-HHHcccccCcceeECCCC-CCCcCCHhHhC-------CCCCCCEEE
Confidence 1 12577888999999776 566664 345778899999999886 77787776533 278899999
Q ss_pred cccCCCcceeeccCceeecCCcceeecccCCCc
Q 046577 803 LCDLDSLTSFCSANYTFEFPSLQELGVICCPKM 835 (878)
Q Consensus 803 l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 835 (878)
++++ .++.++.......+++|++|++.++|-.
T Consensus 591 L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 591 LQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 9886 6777775532114788999998876543
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4e-38 Score=369.11 Aligned_cols=511 Identities=16% Similarity=0.137 Sum_probs=258.4
Q ss_pred ccceEEEEeccccccCCCC-C-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccE
Q 046577 207 KKCYAISIRYCCIHELPNA-L-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKT 283 (878)
Q Consensus 207 ~~~~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~ 283 (878)
+++++|++++|.+..++.. + .+++|++|++++|.... +++..|.++++|++|++++|.+..+ |+.|+++++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET---IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc---cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 4555555555555555442 2 55555555555555443 4444455555555555555555544 555555555555
Q ss_pred EEecCccccccchhhhcCCCCCCEEEcCCCCCc--ccchhhcCCCCccEEecCCCCCCCccCcchhcCCcccc----EEE
Q 046577 284 LCLDESILRDIDIAIIGKLENLEILSFVRSDTV--QLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLE----ELY 357 (878)
Q Consensus 284 L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~----~L~ 357 (878)
|++++|.+.+..+..++++.+|++|++++|.+. .+|..++++++|++|++++|. +..++...++.+++|+ +|+
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceee
Confidence 555555555533345555555555555555554 345555555555555555555 4444443344444443 455
Q ss_pred cccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCC--cCCchhhhcccccccccccCcccccccccccccccc
Q 046577 358 MCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNES--MLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTL 435 (878)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~ 435 (878)
+++|.+. . .........+|+.|++++|... ..+..
T Consensus 188 l~~n~l~-----------~-~~~~~~~~~~L~~L~L~~n~~~~~~~~~~------------------------------- 224 (606)
T 3vq2_A 188 MSLNPID-----------F-IQDQAFQGIKLHELTLRGNFNSSNIMKTC------------------------------- 224 (606)
T ss_dssp CTTCCCC-----------E-ECTTTTTTCEEEEEEEESCCSCHHHHHHH-------------------------------
T ss_pred ccCCCcc-----------e-eCcccccCceeeeeeccCCccchhHHHHH-------------------------------
Confidence 5555443 0 1111112225555555555432 11111
Q ss_pred cccccccCCCcceeeeccccceeecccCCCCCcccccc--cCccEEeeccccccccccchhhhcccCCcCEEEEeCCchh
Q 046577 436 LFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHF--QSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDL 513 (878)
Q Consensus 436 ~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l 513 (878)
+. .+++|+.+.+....+.........+...+..+ -.++.+++..++.+....+. +..+++|+.|+++++. +
T Consensus 225 -~~---~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~-~ 297 (606)
T 3vq2_A 225 -LQ---NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVS-I 297 (606)
T ss_dssp -HH---TTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCC-C
T ss_pred -hc---cccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCcc-c
Confidence 11 34444444433221110000000000000001 13455555444555554333 5666777777777666 4
Q ss_pred HHHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCC
Q 046577 514 QEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQ 593 (878)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~ 593 (878)
+.++ .. . .+++|++|++++|.- ..++. . .+++|++|++++|..+..++
T Consensus 298 ~~l~-~l-~-------~~~~L~~L~l~~n~l-~~lp~---~-~l~~L~~L~l~~n~~~~~~~------------------ 345 (606)
T 3vq2_A 298 KYLE-DV-P-------KHFKWQSLSIIRCQL-KQFPT---L-DLPFLKSLTLTMNKGSISFK------------------ 345 (606)
T ss_dssp CCCC-CC-C-------TTCCCSEEEEESCCC-SSCCC---C-CCSSCCEEEEESCSSCEECC------------------
T ss_pred hhhh-hc-c-------ccccCCEEEcccccC-ccccc---C-CCCccceeeccCCcCccchh------------------
Confidence 4333 11 1 356677777766532 44441 1 46677777777664444321
Q ss_pred CCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeecc
Q 046577 594 PPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSM 673 (878)
Q Consensus 594 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~ 673 (878)
...+++|++|++++|..............+++|++|+++++.+..+|.. +..+++|+.|++++|. +....+.
T Consensus 346 -----~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~-l~~~~~~ 417 (606)
T 3vq2_A 346 -----KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN--FMGLEELQHLDFQHST-LKRVTEF 417 (606)
T ss_dssp -----CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCC--CTTCTTCCEEECTTSE-EESTTTT
T ss_pred -----hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhh--ccCCCCCCeeECCCCc-cCCccCh
Confidence 1346667777777766543311111122356667777766666666643 6666777777776543 2222110
Q ss_pred ccccccccccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCccc
Q 046577 674 EGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMH 753 (878)
Q Consensus 674 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~ 753 (878)
..+..+++|++|++++|.-....+. ....+++|++|++++|.--....|..+..+++|++|++++| .++.
T Consensus 418 -----~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~ 487 (606)
T 3vq2_A 418 -----SAFLSLEKLLYLDISYTNTKIDFDG----IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQ 487 (606)
T ss_dssp -----TTTTTCTTCCEEECTTSCCEECCTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCE
T ss_pred -----hhhhccccCCEEECcCCCCCccchh----hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCc
Confidence 2345666777777766653222211 12455677777777743333233555666777777777666 3444
Q ss_pred ccchhHHhhcccccEEEEcccccccceec-ccccccccceeeeccccceecccCCCcceeeccCceeecC-Ccceeeccc
Q 046577 754 LVTSSTAKTLVRLVSLGVYGCRAMTEVVI-NDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFP-SLQELGVIC 831 (878)
Q Consensus 754 l~~~~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~-~L~~L~i~~ 831 (878)
++ +..+.++++|++|++++| .++.+++ .... +++|++|++++|. ++.+|... ..++ +|++|++.+
T Consensus 488 ~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--------l~~L~~L~l~~N~-l~~~p~~~--~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 488 IS-WGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQ--------LYSLSTLDCSFNR-IETSKGIL--QHFPKSLAFFNLTN 554 (606)
T ss_dssp EC-TTTTTTCTTCCEEECCSS-CCSCEEGGGTTT--------CTTCCEEECTTSC-CCCEESCG--GGSCTTCCEEECCS
T ss_pred cC-hhhhcccccCCEEECCCC-cCCCcCHHHccC--------CCcCCEEECCCCc-CcccCHhH--hhhcccCcEEEccC
Confidence 43 344566677777777776 4444432 2222 6677777777654 66666542 2455 477777766
Q ss_pred CCC
Q 046577 832 CPK 834 (878)
Q Consensus 832 C~~ 834 (878)
+|-
T Consensus 555 N~~ 557 (606)
T 3vq2_A 555 NSV 557 (606)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-36 Score=356.74 Aligned_cols=173 Identities=19% Similarity=0.192 Sum_probs=86.8
Q ss_pred EEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccc
Q 046577 213 SIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESIL 291 (878)
Q Consensus 213 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~ 291 (878)
+.++..+..+|..+. +.+++|++++|.... +++..|.++++|++|++++|.+..+ |..|+++++|++|++++|.+
T Consensus 18 ~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 18 NCENLGLNEIPGTLP-NSTECLEFSFNVLPT---IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp ECTTSCCSSCCTTSC-TTCCEEECTTCCCSE---ECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ECCCCCcccCcCCCC-CcCcEEEccCCccCc---CChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 333334444444332 245555555555443 4333445555555555555555533 44555555555555555555
Q ss_pred cccchhhhcCCCCCCEEEcCCCCCccc-chhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhh
Q 046577 292 RDIDIAIIGKLENLEILSFVRSDTVQL-PKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERA 370 (878)
Q Consensus 292 ~~~~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 370 (878)
.+..|..|+++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~------ 166 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH------ 166 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC------
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc------
Confidence 554455555555555555555555544 3335555555555555555 44432111334555555555555443
Q ss_pred cccCCCCChhhhcCCCCCc--EEEEEecCCCcC
Q 046577 371 NSKRSNASLDELMHLRWLT--TLEIDVKNESML 401 (878)
Q Consensus 371 ~~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~ 401 (878)
...+..++.+++|+ +|++++|.....
T Consensus 167 -----~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 167 -----YLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp -----EECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred -----ccChhhhhhhcccceeEEecCCCccCcc
Confidence 22234455555555 455555544333
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.9e-36 Score=350.07 Aligned_cols=526 Identities=15% Similarity=0.151 Sum_probs=380.1
Q ss_pred eEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecC
Q 046577 210 YAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDE 288 (878)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~ 288 (878)
++++.+++.++.+|..+. +++++|++++|.... ++...|.++++|++|++++|.++.+ |..|+++++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKI---LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcCE---eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 467777788888888665 789999999998765 7776689999999999999999876 67789999999999999
Q ss_pred ccccccchhhhcCCCCCCEEEcCCCCCcccc-hhhcCCCCccEEecCCCCCCCc--cCcchhcCCccccEEEcccCcchh
Q 046577 289 SILRDIDIAIIGKLENLEILSFVRSDTVQLP-KALGQLTKLRLLDLTDCFHLKV--IAPNVISSLIRLEELYMCNCSIEW 365 (878)
Q Consensus 289 ~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~ 365 (878)
|.+.+..|..|+++++|++|++++|.+..+| ..++++++|++|++++|. +.. +|.. ++++++|++|++++|.+..
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCccee
Confidence 9998866889999999999999999998776 568999999999999998 653 5665 8999999999999987751
Q ss_pred HHhhhcccCCCCChhhhcCCCC-CcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCC
Q 046577 366 EVERANSKRSNASLDELMHLRW-LTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALP 444 (878)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 444 (878)
.....+..+.+++. +.+|++++|....++... + ...
T Consensus 168 --------~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~-------------------------------~----~~~ 204 (606)
T 3vq2_A 168 --------ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA-------------------------------F----QGI 204 (606)
T ss_dssp --------ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT-------------------------------T----TTC
T ss_pred --------cChhhhhhhhccccccceeeccCCCcceeCccc-------------------------------c----cCc
Confidence 11122344444443 557888877765544432 1 234
Q ss_pred CcceeeeccccceeecccCCCCCcccccccCccEEeeccc-----cccccccchhhhcccC--CcCEEEEeCCchhHHHh
Q 046577 445 NLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRC-----HKLKYIFSASMIGSLK--QLQHLDIRDCKDLQEII 517 (878)
Q Consensus 445 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c-----~~l~~~~~~~~l~~l~--~L~~L~l~~~~~l~~~~ 517 (878)
+|++|++++|.+... ..+.+ +..+++|+.+.+... ..+... +...+..+. .++.+.+..+..+....
T Consensus 205 ~L~~L~L~~n~~~~~----~~~~~-~~~l~~L~~l~l~~~~~~~~~~l~~~-~~~~~~~l~~l~l~~l~l~~~~~~~~~~ 278 (606)
T 3vq2_A 205 KLHELTLRGNFNSSN----IMKTC-LQNLAGLHVHRLILGEFKDERNLEIF-EPSIMEGLCDVTIDEFRLTYTNDFSDDI 278 (606)
T ss_dssp EEEEEEEESCCSCHH----HHHHH-HHTTTTCEEEEEEEECCTTSCCCSCC-CGGGGTTGGGSEEEEEEECCCTTCCGGG
T ss_pred eeeeeeccCCccchh----HHHHH-hccccccccccccccccccCCccccc-ChHHhhhhhhccHhheeccccccccccc
Confidence 799999998854310 01111 124677777766431 111111 111122222 46667775555455443
Q ss_pred hcccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCC
Q 046577 518 SENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLP 597 (878)
Q Consensus 518 ~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~ 597 (878)
.... .+++|++|++.++ .++.++ ....+++|++|++.+|.- ..+| .
T Consensus 279 ~~~~--------~l~~L~~L~l~~~-~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp---------------------~ 324 (606)
T 3vq2_A 279 VKFH--------CLANVSAMSLAGV-SIKYLE---DVPKHFKWQSLSIIRCQL-KQFP---------------------T 324 (606)
T ss_dssp GSCG--------GGTTCSEEEEESC-CCCCCC---CCCTTCCCSEEEEESCCC-SSCC---------------------C
T ss_pred cccc--------cCCCCCEEEecCc-cchhhh---hccccccCCEEEcccccC-cccc---------------------c
Confidence 3322 4899999999995 456554 345688999999999854 6663 1
Q ss_pred ccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCcc---chhHHHHHcCCCceEEEeccCccceeeccc
Q 046577 598 LEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGF---PIWNVLERFHNLEILTLFNFSFHEEVFSME 674 (878)
Q Consensus 598 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~ 674 (878)
..+++|+.|++++|..... ++...+++|+.|+++++.+..+ +. .+..+++|+.|++++|. +..++
T Consensus 325 --~~l~~L~~L~l~~n~~~~~----~~~~~l~~L~~L~ls~n~l~~~~~~~~--~~~~~~~L~~L~L~~n~-l~~~~--- 392 (606)
T 3vq2_A 325 --LDLPFLKSLTLTMNKGSIS----FKKVALPSLSYLDLSRNALSFSGCCSY--SDLGTNSLRHLDLSFNG-AIIMS--- 392 (606)
T ss_dssp --CCCSSCCEEEEESCSSCEE----CCCCCCTTCCEEECCSSCEEEEEECCH--HHHCCSCCCEEECCSCS-EEEEC---
T ss_pred --CCCCccceeeccCCcCccc----hhhccCCCCCEEECcCCccCCCcchhh--hhccCCcccEeECCCCc-cccch---
Confidence 1689999999999964332 2445689999999988877766 45 48999999999999775 55553
Q ss_pred cccccccccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccc
Q 046577 675 GCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHL 754 (878)
Q Consensus 675 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l 754 (878)
..+..+++|+.|+++++.-....+.. ....+++|++|++++|. ++...|..+..+++|++|++++|. +...
T Consensus 393 ----~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 463 (606)
T 3vq2_A 393 ----ANFMGLEELQHLDFQHSTLKRVTEFS---AFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNS-FKDN 463 (606)
T ss_dssp ----CCCTTCTTCCEEECTTSEEESTTTTT---TTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCE-EGGG
T ss_pred ----hhccCCCCCCeeECCCCccCCccChh---hhhccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCCc-CCCc
Confidence 34678999999999997633222211 23578999999999965 555557778999999999999884 4431
Q ss_pred cchhHHhhcccccEEEEcccccccceecccccccccceeeeccccceecccCCCcceeeccCceeecCCcceeecccCCC
Q 046577 755 VTSSTAKTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFPSLQELGVICCPK 834 (878)
Q Consensus 755 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 834 (878)
..+..+..+++|++|++++| .++.++..... .+++|++|++++|. ++.+.... ...+++|++|++++|.
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-------~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~l~~N~- 532 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKC-QLEQISWGVFD-------TLHRLQLLNMSHNN-LLFLDSSH-YNQLYSLSTLDCSFNR- 532 (606)
T ss_dssp EECSCCTTCTTCCEEECTTS-CCCEECTTTTT-------TCTTCCEEECCSSC-CSCEEGGG-TTTCTTCCEEECTTSC-
T ss_pred chHHhhccCCCCCEEECCCC-cCCccChhhhc-------ccccCCEEECCCCc-CCCcCHHH-ccCCCcCCEEECCCCc-
Confidence 12456788999999999998 66666544322 28999999999984 66664333 2368999999999985
Q ss_pred ccccCCCCCCCC-CceEEEeecc
Q 046577 835 MKIFTTGESITP-PGVYVWYGET 856 (878)
Q Consensus 835 l~~lp~~~~~~p-~L~~l~~~~~ 856 (878)
++.+|......| .|+.+.+.++
T Consensus 533 l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 533 IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CCCEESCGGGSCTTCCEEECCSC
T ss_pred CcccCHhHhhhcccCcEEEccCC
Confidence 889998765666 6999999953
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.8e-36 Score=351.44 Aligned_cols=531 Identities=17% Similarity=0.144 Sum_probs=328.3
Q ss_pred CCCCCCCCCccccccceEEEEeccccccCCC-CC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC
Q 046577 194 NEDVWELPDKESLKKCYAISIRYCCIHELPN-AL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL 271 (878)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l 271 (878)
+.++..+|. ..++.+++|++++|.+..++. .+ .+++|++|++++|.... +++..|.++++|++|++++|.+..+
T Consensus 21 ~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 21 NLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW---IHEDTFQSQHRLDTLVLTANPLIFM 96 (606)
T ss_dssp TSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCSEE
T ss_pred CCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce---eChhhccCccccCeeeCCCCccccc
Confidence 344555553 245689999999999998854 33 89999999999998765 6556689999999999999999865
Q ss_pred -ccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccc-hhhcCCCCccEEecCCCCCCCccCcchhcC
Q 046577 272 -PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLP-KALGQLTKLRLLDLTDCFHLKVIAPNVISS 349 (878)
Q Consensus 272 -p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~ 349 (878)
|..++++++|++|++++|.+.+..|..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..+++..++.
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 175 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSS 175 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHT
T ss_pred ChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhh
Confidence 788999999999999999999855788999999999999999998763 335559999999999998 88887777999
Q ss_pred Ccccc--EEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchh-hhcccccccccccCccccccc
Q 046577 350 LIRLE--ELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGF-LARKLERQVSQEESTTTYCSS 426 (878)
Q Consensus 350 l~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~ 426 (878)
+++|+ +|++++|.+. ...+. .....+|+.|+++++. ..+... .+.++....+....+......
T Consensus 176 l~~L~~l~L~l~~n~l~-----------~~~~~-~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~ 241 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIA-----------GIEPG-AFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDE 241 (606)
T ss_dssp TTTCCSEEEECTTCCCC-----------EECTT-TTTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred hcccceeEEecCCCccC-----------ccChh-HhhhccccccccCCch--hHHHHhhhccccchhheechhhcccccc
Confidence 99999 8999998876 11222 2334678899888765 111111 111111111111111111111
Q ss_pred ccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEE
Q 046577 427 EITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLD 506 (878)
Q Consensus 427 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~ 506 (878)
.+. ...+.++.. .+|+.|+++++.++.+... .+..+++|++|++++ +.++.++. .++.+++|++|+
T Consensus 242 ~i~----~~~~~~l~~-~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~-n~l~~lp~--~l~~l~~L~~L~ 307 (606)
T 3t6q_A 242 DIS----PAVFEGLCE-MSVESINLQKHYFFNISSN------TFHCFSGLQELDLTA-THLSELPS--GLVGLSTLKKLV 307 (606)
T ss_dssp CCC----GGGGGGGGG-SEEEEEECTTCCCSSCCTT------TTTTCTTCSEEECTT-SCCSCCCS--SCCSCTTCCEEE
T ss_pred ccC----hhHhchhhc-CceeEEEeecCccCccCHH------HhccccCCCEEeccC-CccCCCCh--hhcccccCCEEE
Confidence 110 011221111 2677888888766643222 122577888888887 45665522 267778888888
Q ss_pred EeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCC
Q 046577 507 IRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQ 586 (878)
Q Consensus 507 l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~ 586 (878)
+++|. ++.++..... .+++|++|+++++.....++.+. ...+++|++|++++|. +..++..
T Consensus 308 l~~n~-l~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~--------- 368 (606)
T 3t6q_A 308 LSANK-FENLCQISAS-------NFPSLTHLSIKGNTKRLELGTGC-LENLENLRELDLSHDD-IETSDCC--------- 368 (606)
T ss_dssp CTTCC-CSBGGGGCGG-------GCTTCSEEECCSCSSCCBCCSST-TTTCTTCCEEECCSSC-CCEEEES---------
T ss_pred CccCC-cCcCchhhhh-------ccCcCCEEECCCCCcccccchhh-hhccCcCCEEECCCCc-cccccCc---------
Confidence 88876 5444332222 47788888887754332333322 3456777777777753 3322100
Q ss_pred CCCCCCCCCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCc
Q 046577 587 LGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSF 666 (878)
Q Consensus 587 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~ 666 (878)
......+++|++|++++|......+..+. .+++|+.|+++++.+........+..+++|+.|++++|.
T Consensus 369 ---------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~- 436 (606)
T 3t6q_A 369 ---------NLQLRNLSHLQSLNLSYNEPLSLKTEAFK--ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL- 436 (606)
T ss_dssp ---------TTTTTTCTTCCEEECCSCSCEEECTTTTT--TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-
T ss_pred ---------chhcccCCCCCEEECCCCcCCcCCHHHhc--CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-
Confidence 01114567777777777765554443332 356777777755554433211135667777777777553
Q ss_pred cceeeccccccccccccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEec
Q 046577 667 HEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVAS 746 (878)
Q Consensus 667 l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~ 746 (878)
+.... +..+..+++|++|++++++- .............+++|++|++++| .++.+.|..+..+++|++|+++
T Consensus 437 l~~~~------~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 437 LDISS------EQLFDGLPALQHLNLQGNHF-PKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp CBTTC------TTTTTTCTTCCEEECTTCBC-GGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred cCCcC------HHHHhCCCCCCEEECCCCCC-CccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECC
Confidence 22221 33345667777777776642 2110000011245666777777774 4555545556666777777776
Q ss_pred CCCCcccccchhHHhhcccccEEEEcccccccceecccccccccceeeeccccceecccCC
Q 046577 747 GCKELMHLVTSSTAKTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLD 807 (878)
Q Consensus 747 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 807 (878)
+| .++... +..+.++++| .|++++| .++.++..... .+++|+.|+++++|
T Consensus 509 ~N-~l~~~~-~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~-------~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 509 HN-RLTSSS-IEALSHLKGI-YLNLASN-HISIILPSLLP-------ILSQQRTINLRQNP 558 (606)
T ss_dssp SS-CCCGGG-GGGGTTCCSC-EEECCSS-CCCCCCGGGHH-------HHHTSSEEECTTCC
T ss_pred CC-ccCcCC-hhHhCccccc-EEECcCC-cccccCHhhcc-------cCCCCCEEeCCCCC
Confidence 65 344432 3455666666 6777765 44444433211 25666667666655
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=347.94 Aligned_cols=525 Identities=17% Similarity=0.177 Sum_probs=372.6
Q ss_pred eeCCCCCCCCCccccccceEEEEeccccccCCC-CC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC
Q 046577 192 VENEDVWELPDKESLKKCYAISIRYCCIHELPN-AL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF 269 (878)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~ 269 (878)
..+..+..+|. .++++++|++++|.+..+.. .+ .+++|++|++++|..... +++..|.++++|++|+|++|.+.
T Consensus 11 cs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~--i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 11 YRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT--IDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp ESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE--ECTTTTSSCTTCCEEECTTCCCC
T ss_pred ccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc--cCHHHhcCCCCCCEEECCCCcCc
Confidence 44555667776 67889999999999987754 33 899999999999865443 76677899999999999999998
Q ss_pred CC-ccccccccCccEEEecCccccccchhh--hcCCCCCCEEEcCCCCCccc--chhhcCCCCccEEecCCCCCCCccCc
Q 046577 270 SL-PSSIDLLVKLKTLCLDESILRDIDIAI--IGKLENLEILSFVRSDTVQL--PKALGQLTKLRLLDLTDCFHLKVIAP 344 (878)
Q Consensus 270 ~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~--i~~L~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~~~~ 344 (878)
.+ |+.|+++++|++|++++|.+.+..|.. ++++++|++|++++|.+..+ +..++++++|++|++++|. +..+..
T Consensus 87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~ 165 (844)
T 3j0a_A 87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCE 165 (844)
T ss_dssp EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCS
T ss_pred ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCH
Confidence 66 889999999999999999988755655 89999999999999988865 3568999999999999988 666555
Q ss_pred chhcCC--ccccEEEcccCcchhHHhhhcccCCCCChhhhcCCC------CCcEEEEEecCCC-cCCchh----hhcccc
Q 046577 345 NVISSL--IRLEELYMCNCSIEWEVERANSKRSNASLDELMHLR------WLTTLEIDVKNES-MLPAGF----LARKLE 411 (878)
Q Consensus 345 ~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~----~~~~L~ 411 (878)
..++.+ ++|+.|++++|.+. ...+..++.+. .|+.|++++|... ..+..+ ....+.
T Consensus 166 ~~l~~l~~~~L~~L~L~~n~l~-----------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 166 HELEPLQGKTLSFFSLAANSLY-----------SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp GGGHHHHHCSSCCCEECCSBSC-----------CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred HHcccccCCccceEECCCCccc-----------cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 447777 88999999988776 22233333333 4899999988643 222222 112233
Q ss_pred cccccccCccc-ccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccc
Q 046577 412 RQVSQEESTTT-YCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYI 490 (878)
Q Consensus 412 ~l~l~~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~ 490 (878)
.+.+....... +....+... ....+.++ ..++|+.|++++|.+..+.... +..+++|+.|+|++ +.++.+
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~-~~~~f~~l-~~~~L~~L~Ls~n~l~~~~~~~------~~~l~~L~~L~L~~-n~i~~~ 305 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDP-DQNTFAGL-ARSSVRHLDLSHGFVFSLNSRV------FETLKDLKVLNLAY-NKINKI 305 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTG-GGTTTTTT-TTSCCCEEECTTCCCCEECSCC------SSSCCCCCEEEEES-CCCCEE
T ss_pred ceecccccccccccccccCCC-Chhhhhcc-ccCCccEEECCCCcccccChhh------hhcCCCCCEEECCC-CcCCCC
Confidence 33322111000 000000000 00112211 2478999999999877653222 23689999999999 567765
Q ss_pred cchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCC
Q 046577 491 FSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDK 570 (878)
Q Consensus 491 ~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~ 570 (878)
.+ ..+..+++|++|++++|. ++.+...... .+++|++|+++++ .++.+.... ...+++|+.|+++++ .
T Consensus 306 ~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~ 373 (844)
T 3j0a_A 306 AD-EAFYGLDNLQVLNLSYNL-LGELYSSNFY-------GLPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDN-A 373 (844)
T ss_dssp CT-TTTTTCSSCCEEEEESCC-CSCCCSCSCS-------SCTTCCEEECCSC-CCCCCCSSC-SCSCCCCCEEEEETC-C
T ss_pred Ch-HHhcCCCCCCEEECCCCC-CCccCHHHhc-------CCCCCCEEECCCC-CCCccChhh-hcCCCCCCEEECCCC-C
Confidence 43 447899999999999998 6554333222 4899999999995 666665443 355899999999995 4
Q ss_pred ccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHH
Q 046577 571 LKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVL 650 (878)
Q Consensus 571 L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 650 (878)
++.+ ..+++|+.|++++|....+. . ...+++.|++++|.+..++....+
T Consensus 374 l~~i-------------------------~~~~~L~~L~l~~N~l~~l~-----~-~~~~l~~L~ls~N~l~~l~~~~~~ 422 (844)
T 3j0a_A 374 LTTI-------------------------HFIPSIPDIFLSGNKLVTLP-----K-INLTANLIHLSENRLENLDILYFL 422 (844)
T ss_dssp SCCC-------------------------SSCCSCSEEEEESCCCCCCC-----C-CCTTCCEEECCSCCCCSSTTHHHH
T ss_pred CCcc-------------------------cCCCCcchhccCCCCccccc-----c-cccccceeecccCccccCchhhhh
Confidence 5554 33789999999999865431 1 247899999988888887764356
Q ss_pred HHcCCCceEEEeccCccceeeccccccccccccccccceeecccccccccccccCC--CCCCcccceeeEEeeccccccc
Q 046577 651 ERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDS--KLGPIFQYLEILKVYHCQSLLI 728 (878)
Q Consensus 651 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~--~~~~~~~~L~~L~l~~c~~l~~ 728 (878)
.++++|+.|++++| .+..++... .+..+++|+.|+++++. ++.++..+. .....+++|++|++++ +.++.
T Consensus 423 ~~l~~L~~L~Ls~N-~l~~~~~~~-----~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~ 494 (844)
T 3j0a_A 423 LRVPHLQILILNQN-RFSSCSGDQ-----TPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNH-NYLNS 494 (844)
T ss_dssp TTCTTCCEEEEESC-CCCCCCSSS-----SSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTT
T ss_pred hcCCccceeeCCCC-ccccccccc-----ccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCC-Ccccc
Confidence 78999999999966 454443221 24457899999999865 343332111 1235689999999999 57888
Q ss_pred ccCCCcccccCccEEEecCCCCcccccchhHHhhcccccEEEEcccccccceecccccccccceeeeccccceecccCC
Q 046577 729 LLPSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLD 807 (878)
Q Consensus 729 l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 807 (878)
+.|..+..+++|++|+++++ +++.++.. .+. ++|+.|++++| .++.+++.. +++|+.|++++.|
T Consensus 495 ~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~-~~~--~~L~~L~Ls~N-~l~~~~~~~----------~~~L~~l~l~~Np 558 (844)
T 3j0a_A 495 LPPGVFSHLTALRGLSLNSN-RLTVLSHN-DLP--ANLEILDISRN-QLLAPNPDV----------FVSLSVLDITHNK 558 (844)
T ss_dssp CCTTSSSSCCSCSEEEEESC-CCSSCCCC-CCC--SCCCEEEEEEE-CCCCCCSCC----------CSSCCEEEEEEEC
T ss_pred cChhHccchhhhheeECCCC-CCCccChh-hhh--ccccEEECCCC-cCCCCChhH----------hCCcCEEEecCCC
Confidence 87777889999999999886 67777542 222 89999999997 676665544 6789999998754
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=347.34 Aligned_cols=527 Identities=16% Similarity=0.120 Sum_probs=375.3
Q ss_pred eEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCC-CCC-ccccccccCccEEEec
Q 046577 210 YAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQL-FSL-PSSIDLLVKLKTLCLD 287 (878)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i-~~l-p~~~~~l~~L~~L~l~ 287 (878)
+..+.++++++.+|. -.+++++|++++|.+.. ++...|.++++|++|+|++|.. ..+ |..|+++++|++|+++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~---i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRT---VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCE---ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCc---cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 356667788889998 56899999999998865 5555589999999999999954 466 7889999999999999
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcc-cchh--hcCCCCccEEecCCCCCCCccC-cchhcCCccccEEEcccCcc
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQ-LPKA--LGQLTKLRLLDLTDCFHLKVIA-PNVISSLIRLEELYMCNCSI 363 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~ 363 (878)
+|.+.+..|..|+++.+|++|++++|.+.. +|.. ++++++|++|++++|. +..++ ...++++++|++|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcC
Confidence 999999779999999999999999999885 5655 8999999999999998 66653 34489999999999999987
Q ss_pred hhHHhhhcccCCCCChhhhcCC--CCCcEEEEEecCCCc-CCchh-hhc------ccccccccccCcccccccccccccc
Q 046577 364 EWEVERANSKRSNASLDELMHL--RWLTTLEIDVKNESM-LPAGF-LAR------KLERQVSQEESTTTYCSSEITLDTS 433 (878)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~~-~~~------~L~~l~l~~~~l~~~~~~~~~~~~~ 433 (878)
. ......+..+ ++|+.|++++|.... .+..+ ... .|+.++++++.+.......
T Consensus 161 ~-----------~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~------ 223 (844)
T 3j0a_A 161 F-----------LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN------ 223 (844)
T ss_dssp C-----------CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG------
T ss_pred C-----------eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHH------
Confidence 6 2334555555 799999999887543 22221 111 3666666655443322211
Q ss_pred cccccccccCCCcceeeecccccee-ecccCCC--CCcccc--cccCccEEeeccccccccccchhhhcccCCcCEEEEe
Q 046577 434 TLLFNEKVALPNLEALEISEINVDK-IWHYNQI--PAAVFP--HFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIR 508 (878)
Q Consensus 434 ~~~l~~~~~~~~L~~L~l~~~~l~~-~~~~~~~--~~~~~~--~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~ 508 (878)
+......+.++.|.+..+.... .+...+. ....+. ..++|+.|++++ +.+..+. +..++.+++|+.|+++
T Consensus 224 ---~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~-n~l~~~~-~~~~~~l~~L~~L~L~ 298 (844)
T 3j0a_A 224 ---FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH-GFVFSLN-SRVFETLKDLKVLNLA 298 (844)
T ss_dssp ---GGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT-CCCCEEC-SCCSSSCCCCCEEEEE
T ss_pred ---HHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC-CcccccC-hhhhhcCCCCCEEECC
Confidence 1111123566677766331111 0000000 000011 237899999999 4566653 3457889999999999
Q ss_pred CCchhHHHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCC
Q 046577 509 DCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLG 588 (878)
Q Consensus 509 ~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~ 588 (878)
+|. ++.++..... .+++|++|+++++ .++.+.... ...+++|+.|+++++ .+..++.
T Consensus 299 ~n~-i~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~i~~~~~------------ 355 (844)
T 3j0a_A 299 YNK-INKIADEAFY-------GLDNLQVLNLSYN-LLGELYSSN-FYGLPKVAYIDLQKN-HIAIIQD------------ 355 (844)
T ss_dssp SCC-CCEECTTTTT-------TCSSCCEEEEESC-CCSCCCSCS-CSSCTTCCEEECCSC-CCCCCCS------------
T ss_pred CCc-CCCCChHHhc-------CCCCCCEEECCCC-CCCccCHHH-hcCCCCCCEEECCCC-CCCccCh------------
Confidence 998 6555433222 4899999999994 566554333 446899999999996 5555532
Q ss_pred CCCCCCCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccc
Q 046577 589 IPVQQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHE 668 (878)
Q Consensus 589 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~ 668 (878)
.....+++|+.|++++|....+. .+++|+.|++++|.+..+|.. ..+++.|+++++ .++
T Consensus 356 --------~~~~~l~~L~~L~Ls~N~l~~i~-------~~~~L~~L~l~~N~l~~l~~~-----~~~l~~L~ls~N-~l~ 414 (844)
T 3j0a_A 356 --------QTFKFLEKLQTLDLRDNALTTIH-------FIPSIPDIFLSGNKLVTLPKI-----NLTANLIHLSEN-RLE 414 (844)
T ss_dssp --------SCSCSCCCCCEEEEETCCSCCCS-------SCCSCSEEEEESCCCCCCCCC-----CTTCCEEECCSC-CCC
T ss_pred --------hhhcCCCCCCEEECCCCCCCccc-------CCCCcchhccCCCCccccccc-----ccccceeecccC-ccc
Confidence 11256899999999999865422 268999999988888888875 678999999954 555
Q ss_pred eeeccccccccccccccccceeecccccccccccccCCCCCCcccceeeEEeeccccccc-----ccCCCcccccCccEE
Q 046577 669 EVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLI-----LLPSSSVSFGNLTKL 743 (878)
Q Consensus 669 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~~l~~L~~L 743 (878)
.+.. +..+..+++|+.|+++++. ++.+..... ...+++|+.|+++++ .++. ..+..+..+++|+.|
T Consensus 415 ~l~~-----~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~--~~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L 485 (844)
T 3j0a_A 415 NLDI-----LYFLLRVPHLQILILNQNR-FSSCSGDQT--PSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVL 485 (844)
T ss_dssp SSTT-----HHHHTTCTTCCEEEEESCC-CCCCCSSSS--SCSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECC
T ss_pred cCch-----hhhhhcCCccceeeCCCCc-ccccccccc--cccCCccccccCCCC-ccccccccccchhhhcCcccccEE
Confidence 5432 1224578999999999875 343322211 145789999999994 4542 223447788999999
Q ss_pred EecCCCCcccccchhHHhhcccccEEEEcccccccceecccccccccceeeeccccceecccCCCcceeeccCceeecCC
Q 046577 744 VASGCKELMHLVTSSTAKTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFPS 823 (878)
Q Consensus 744 ~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~ 823 (878)
++++| +++.++ +..+.++++|+.|++++| .++.++.... .++|+.|+++++ +++.++.. .+++
T Consensus 486 ~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~---------~~~L~~L~Ls~N-~l~~~~~~----~~~~ 548 (844)
T 3j0a_A 486 YLNHN-YLNSLP-PGVFSHLTALRGLSLNSN-RLTVLSHNDL---------PANLEILDISRN-QLLAPNPD----VFVS 548 (844)
T ss_dssp CCCHH-HHTTCC-TTSSSSCCSCSEEEEESC-CCSSCCCCCC---------CSCCCEEEEEEE-CCCCCCSC----CCSS
T ss_pred ECCCC-cccccC-hhHccchhhhheeECCCC-CCCccChhhh---------hccccEEECCCC-cCCCCChh----HhCC
Confidence 99887 677765 456788999999999997 7888776553 388999999984 56666544 3678
Q ss_pred cceeecccCCC
Q 046577 824 LQELGVICCPK 834 (878)
Q Consensus 824 L~~L~i~~C~~ 834 (878)
|+.|++.++|-
T Consensus 549 L~~l~l~~Np~ 559 (844)
T 3j0a_A 549 LSVLDITHNKF 559 (844)
T ss_dssp CCEEEEEEECC
T ss_pred cCEEEecCCCc
Confidence 99999987553
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7e-34 Score=328.99 Aligned_cols=488 Identities=17% Similarity=0.162 Sum_probs=341.6
Q ss_pred EEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccc
Q 046577 213 SIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESIL 291 (878)
Q Consensus 213 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~ 291 (878)
+.+++.++.+|..+. ++|++|++++|.... ++...|.++++|++|++++|.+..+ |..|+.+++|++|++++|.+
T Consensus 11 ~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 11 DGRSRSFTSIPSGLT-AAMKSLDLSFNKITY---IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp ECTTSCCSSCCSCCC-TTCCEEECCSSCCCE---ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccccCC-CCccEEECcCCccCc---cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 445566778887654 789999999998765 5555579999999999999999976 47899999999999999999
Q ss_pred cccchhhhcCCCCCCEEEcCCCCCcc--cchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhh
Q 046577 292 RDIDIAIIGKLENLEILSFVRSDTVQ--LPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVER 369 (878)
Q Consensus 292 ~~~~p~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 369 (878)
.+..|..|+++++|++|++++|.++. .|..++++++|++|++++|..+..+|...++++++|++|++++|.+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~----- 161 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR----- 161 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-----
Confidence 98666679999999999999999884 46779999999999999998678888666899999999999998876
Q ss_pred hcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCccee
Q 046577 370 ANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEAL 449 (878)
Q Consensus 370 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L 449 (878)
+..+..++.+++|++|+++++....++.+. ++ .+++|++|
T Consensus 162 ------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-------------------------------~~---~l~~L~~L 201 (549)
T 2z81_A 162 ------NYQSQSLKSIRDIHHLTLHLSESAFLLEIF-------------------------------AD---ILSSVRYL 201 (549)
T ss_dssp ------EECTTTTTTCSEEEEEEEECSBSTTHHHHH-------------------------------HH---STTTBSEE
T ss_pred ------ccChhhhhccccCceEecccCcccccchhh-------------------------------Hh---hcccccEE
Confidence 345677888999999999988765444332 11 47788888
Q ss_pred eeccccceeecccCCCCCcccccccCccEEeeccccccccccch---hhhcccCCcCEEEEeCCchhHHHhhcccCCCCC
Q 046577 450 EISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSA---SMIGSLKQLQHLDIRDCKDLQEIISENRADQVI 526 (878)
Q Consensus 450 ~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~---~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 526 (878)
++++|.++... +.+.++...+++|+.|+++++ .+++..+. ..+..+++|+.|++++|. +..+...... ...
T Consensus 202 ~L~~n~l~~~~---~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~-~~~ 275 (549)
T 2z81_A 202 ELRDTNLARFQ---FSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFDDCT-LNGLGDFNPS-ESD 275 (549)
T ss_dssp EEESCBCTTCC---CCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEESCE-EECCSCCCCC-TTT
T ss_pred EccCCcccccc---ccccchhhhhhcccceecccc-ccchhHHHHHHHHhhhhcccccccccccc-cccccccccc-chh
Confidence 88888666431 122222234678999999884 44432221 224567889999999887 3322110000 000
Q ss_pred CcccCcccceeccccccccccccCCC----CcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccC
Q 046577 527 PYFVFPQLTTLRLQDLPKLRCLYPGM----HTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKIL 602 (878)
Q Consensus 527 ~~~~~p~L~~L~l~~c~~L~~~~~~~----~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l 602 (878)
....+++|+.|.+.++. +..+.... ....+++|++|++++| +++.+|... ...+
T Consensus 276 ~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~~~--------------------~~~l 333 (549)
T 2z81_A 276 VVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPCSF--------------------SQHL 333 (549)
T ss_dssp CCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCHHH--------------------HHHC
T ss_pred hhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccC-ccccCCHHH--------------------HhcC
Confidence 11247788888887742 22211000 0112468899999986 466665321 1357
Q ss_pred CCcceEEeccCCccccccc-cCccccccCCcEEEEecCCCCccch-hHHHHHcCCCceEEEeccCccceeeccccccccc
Q 046577 603 PNLTELSLSGKDAKMILQA-DFPQHLFGSLKRLVIAEDDSAGFPI-WNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKH 680 (878)
Q Consensus 603 ~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 680 (878)
++|++|++++|......+. ......+++|+.|++++|.++.++. ...+..+++|++|++++| .++.+ |..
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-------p~~ 405 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPM-------PDS 405 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCC-------CSC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccC-------Chh
Confidence 8999999999986653321 1112457889999998888887764 125788999999999976 55555 334
Q ss_pred cccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHH
Q 046577 681 VGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTA 760 (878)
Q Consensus 681 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 760 (878)
+..+++|++|+++++. ++.++. ..+++|++|++++| .++.+ ...+++|++|++++| +++.++. .
T Consensus 406 ~~~~~~L~~L~Ls~N~-l~~l~~------~~~~~L~~L~Ls~N-~l~~~----~~~l~~L~~L~Ls~N-~l~~ip~---~ 469 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTG-IRVVKT------CIPQTLEVLDVSNN-NLDSF----SLFLPRLQELYISRN-KLKTLPD---A 469 (549)
T ss_dssp CCCCTTCCEEECTTSC-CSCCCT------TSCTTCSEEECCSS-CCSCC----CCCCTTCCEEECCSS-CCSSCCC---G
T ss_pred hcccccccEEECCCCC-cccccc------hhcCCceEEECCCC-Chhhh----cccCChhcEEECCCC-ccCcCCC---c
Confidence 5577889999998875 454442 22368888888884 56655 246788888888776 5666643 2
Q ss_pred hhcccccEEEEcccccccceecccccccccceeeeccccceecccCCCc
Q 046577 761 KTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLDSL 809 (878)
Q Consensus 761 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 809 (878)
..+++|++|++++| .++.++..... .+++|+.|++++++-.
T Consensus 470 ~~l~~L~~L~Ls~N-~l~~~~~~~~~-------~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 470 SLFPVLLVMKISRN-QLKSVPDGIFD-------RLTSLQKIWLHTNPWD 510 (549)
T ss_dssp GGCTTCCEEECCSS-CCCCCCTTGGG-------GCTTCCEEECCSSCBC
T ss_pred ccCccCCEEecCCC-ccCCcCHHHHh-------cCcccCEEEecCCCcc
Confidence 46788888888886 66666554322 2788888888877743
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-34 Score=331.32 Aligned_cols=186 Identities=19% Similarity=0.257 Sum_probs=134.2
Q ss_pred CCCCCCCCccccccceEEEEeccccccCCCC--CCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc
Q 046577 195 EDVWELPDKESLKKCYAISIRYCCIHELPNA--LECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP 272 (878)
Q Consensus 195 ~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp 272 (878)
..+..+|. ..++++++|++++|.+..++.. ..+++|++|++++|.... ++...|.++++|++|++++|.+..+|
T Consensus 17 ~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~---i~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (570)
T 2z63_A 17 LNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGNPIQSLA 92 (570)
T ss_dssp SCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc---cCcccccCchhCCEEeCcCCcCCccC
Confidence 34455554 2356788888888888777643 278888888888887654 66666788888888888888887664
Q ss_pred -cccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcc--cchhhcCCCCccEEecCCCCCCCccCcchhcC
Q 046577 273 -SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQ--LPKALGQLTKLRLLDLTDCFHLKVIAPNVISS 349 (878)
Q Consensus 273 -~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~ 349 (878)
..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~ 171 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 171 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccc
Confidence 678888888888888888877333368888888888888887774 67788888888888888887 77776655777
Q ss_pred Cccc----cEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecC
Q 046577 350 LIRL----EELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKN 397 (878)
Q Consensus 350 l~~L----~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 397 (878)
+++| ++|++++|.+. ...+..+... +|++|+++++.
T Consensus 172 l~~L~~~~~~L~l~~n~l~-----------~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMN-----------FIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp HHTCTTCCCEEECTTCCCC-----------EECTTTTTTC-EEEEEEEESCC
T ss_pred hhccchhhhhcccCCCCce-----------ecCHHHhccC-cceeEeccccc
Confidence 7777 77888877665 1122333333 67888887663
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-33 Score=322.62 Aligned_cols=502 Identities=15% Similarity=0.164 Sum_probs=294.7
Q ss_pred EEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCc
Q 046577 211 AISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDES 289 (878)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~ 289 (878)
.++-++..+..+|..+. +++++|++++|.... ++...|.++++|++|++++|.+..+ |..|+++++|++|++++|
T Consensus 11 ~~~c~~~~l~~ip~~l~-~~l~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 11 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp EEECCSSCCSSCCSSSC-SSCCEEECCSCCCCE---ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEEeCCCCccccCCCcc-ccccEEEccCCccCc---cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 44555556778887653 689999999998865 6766789999999999999999977 567999999999999999
Q ss_pred cccccchhhhcCCCCCCEEEcCCCCCcccch-hhcCCCCccEEecCCCCCCCc--cCcchhcCCccccEEEcccCcchhH
Q 046577 290 ILRDIDIAIIGKLENLEILSFVRSDTVQLPK-ALGQLTKLRLLDLTDCFHLKV--IAPNVISSLIRLEELYMCNCSIEWE 366 (878)
Q Consensus 290 ~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~ 366 (878)
.+.+..|..|+++++|++|++++|.++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~-- 162 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ-- 162 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCC--
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccc--
Confidence 9998667899999999999999999998876 59999999999999998 665 5666 899999999999999875
Q ss_pred HhhhcccCCCCChhhhcCCCCC----cEEEEEecCCCcCCchh-hhcccccccccccCcccccccccccccccccccccc
Q 046577 367 VERANSKRSNASLDELMHLRWL----TTLEIDVKNESMLPAGF-LARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKV 441 (878)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 441 (878)
...+..++.+++| +.|++++|....++... ...+|+.+.++.+....-. ....+.
T Consensus 163 ---------~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~--------~~~~~~--- 222 (570)
T 2z63_A 163 ---------SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV--------MKTCIQ--- 222 (570)
T ss_dssp ---------EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTH--------HHHHHH---
T ss_pred ---------eecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccc--------hhhhhc---
Confidence 2233445555566 78999888876655443 2224444444322110000 000011
Q ss_pred cCCCcceeeeccccceeecc-cCCCCCccccccc--CccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhh
Q 046577 442 ALPNLEALEISEINVDKIWH-YNQIPAAVFPHFQ--SLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIIS 518 (878)
Q Consensus 442 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~l~--~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 518 (878)
.+++++.+.+....+..... ..++. +.+..++ .++.+++.++..+....+ ..++.+++|++|++++|. ++.++.
T Consensus 223 ~l~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-l~~l~~ 299 (570)
T 2z63_A 223 GLAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVT-IERVKD 299 (570)
T ss_dssp TTTTCEEEEEEEEECCCCSSCEECCT-TTTGGGGGSEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCE-ECSCCB
T ss_pred CccccceeeeccccccCchhhhhcch-hhhccccccchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCcc-chhhhh
Confidence 23333333222111000000 00000 0000111 233344443323332211 224445555555555554 332222
Q ss_pred cccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCc
Q 046577 519 ENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPL 598 (878)
Q Consensus 519 ~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~ 598 (878)
.. ..+ +|++|++.+|. +..+|.
T Consensus 300 ~~----------------------------------~~~-~L~~L~l~~n~-~~~l~~---------------------- 321 (570)
T 2z63_A 300 FS----------------------------------YNF-GWQHLELVNCK-FGQFPT---------------------- 321 (570)
T ss_dssp CC----------------------------------SCC-CCSEEEEESCB-CSSCCB----------------------
T ss_pred hh----------------------------------ccC-CccEEeeccCc-ccccCc----------------------
Confidence 11 122 45555555542 222221
Q ss_pred cccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCcc---chhHHHHHcCCCceEEEeccCccceeecccc
Q 046577 599 EKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGF---PIWNVLERFHNLEILTLFNFSFHEEVFSMEG 675 (878)
Q Consensus 599 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~ 675 (878)
..+++|+.|++++|..... ++...+++|++|+++++.+..+ +. .+..+++|++|++++|. +..+++
T Consensus 322 -~~l~~L~~L~l~~n~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~~~L~~L~l~~n~-l~~~~~--- 390 (570)
T 2z63_A 322 -LKLKSLKRLTFTSNKGGNA----FSEVDLPSLEFLDLSRNGLSFKGCCSQ--SDFGTTSLKYLDLSFNG-VITMSS--- 390 (570)
T ss_dssp -CBCSSCCEEEEESCBSCCB----CCCCBCTTCCEEECCSSCCBEEEEEEH--HHHTCSCCCEEECCSCS-EEEEEE---
T ss_pred -ccccccCEEeCcCCccccc----cccccCCCCCEEeCcCCccCccccccc--cccccCccCEEECCCCc-cccccc---
Confidence 2345555555555553221 1223456666666655555444 23 36677777777777553 333321
Q ss_pred ccccccccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCc-ccc
Q 046577 676 CLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKEL-MHL 754 (878)
Q Consensus 676 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l-~~l 754 (878)
.+..+++|+.|+++++.- ...... .....+++|++|++++|. ++...|..+..+++|++|++++|.-. ..+
T Consensus 391 ----~~~~l~~L~~L~l~~n~l-~~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 391 ----NFLGLEQLEHLDFQHSNL-KQMSEF--SVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp ----EEETCTTCCEEECTTSEE-ESCTTS--CTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred ----cccccCCCCEEEccCCcc-ccccch--hhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 244667777777776542 221110 112456777777777753 33333555667777777777776422 123
Q ss_pred cchhHHhhcccccEEEEcccccccceec-ccccccccceeeeccccceecccCCCcceeeccCceeecCCcceeecccCC
Q 046577 755 VTSSTAKTLVRLVSLGVYGCRAMTEVVI-NDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFPSLQELGVICCP 833 (878)
Q Consensus 755 ~~~~~~~~l~~L~~L~i~~c~~l~~~~~-~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~ 833 (878)
+..+..+++|++|++++| .++.++. .... +++|++|++++| +++.++... ...+++|++|++++++
T Consensus 463 --p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~--------l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 463 --PDIFTELRNLTFLDLSQC-QLEQLSPTAFNS--------LSSLQVLNMASN-QLKSVPDGI-FDRLTSLQKIWLHTNP 529 (570)
T ss_dssp --CSCCTTCTTCCEEECTTS-CCCEECTTTTTT--------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred --hhhhhcccCCCEEECCCC-ccccCChhhhhc--------ccCCCEEeCCCC-cCCCCCHHH-hhcccCCcEEEecCCc
Confidence 345566777777777776 4554432 2222 677777777775 456665433 2256777777777764
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.5e-31 Score=304.66 Aligned_cols=494 Identities=16% Similarity=0.164 Sum_probs=311.7
Q ss_pred CCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
|+...+.+.+++.... +|..+ .++|++|++++|.++.+ |..++++++|++|++++|.+.+..|..|+++++|+
T Consensus 4 C~~~~~c~~~~~~l~~---ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 4 CDASGVCDGRSRSFTS---IPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp ECTTSEEECTTSCCSS---CCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCceEECCCCcccc---ccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCC
Confidence 3444456666666654 88765 37899999999998866 67789999999999999999886668899999999
Q ss_pred EEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCcc--CcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhc
Q 046577 307 ILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVI--APNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELM 383 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 383 (878)
+|++++|.+..+|.. ++++++|++|++++|. +..+ |.. ++++++|++|++++|.... ......++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~----------~~~~~~~~ 145 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFS----------EIRRIDFA 145 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCC----------EECTTTTT
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhh-hhccCCccEEECCCCcccc----------ccCHhhhh
Confidence 999999998887765 8999999999999987 6643 444 7889999999998886330 11234677
Q ss_pred CCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccC
Q 046577 384 HLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYN 463 (878)
Q Consensus 384 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~ 463 (878)
.+++|++|++++|........ .+ ..+++|++|+++++.+..+
T Consensus 146 ~l~~L~~L~L~~n~l~~~~~~-------------------------------~l---~~l~~L~~L~l~~n~~~~~---- 187 (549)
T 2z81_A 146 GLTSLNELEIKALSLRNYQSQ-------------------------------SL---KSIRDIHHLTLHLSESAFL---- 187 (549)
T ss_dssp TCCEEEEEEEEETTCCEECTT-------------------------------TT---TTCSEEEEEEEECSBSTTH----
T ss_pred cccccCeeeccCCcccccChh-------------------------------hh---hccccCceEecccCccccc----
Confidence 788888888888765432111 01 1467777788777744321
Q ss_pred CCCCcccccccCccEEeecccccccccc--chhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceecccc
Q 046577 464 QIPAAVFPHFQSLTRLIVWRCHKLKYIF--SASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQD 541 (878)
Q Consensus 464 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~--~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 541 (878)
+.+.+..+++|+.|++++ +.++... +......+++|++|+++++..-...+..... ....+++|+.+++.+
T Consensus 188 --~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~----~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 188 --LEIFADILSSVRYLELRD-TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLK----LLRYILELSEVEFDD 260 (549)
T ss_dssp --HHHHHHSTTTBSEEEEES-CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHG----GGGGCTTCCEEEEES
T ss_pred --chhhHhhcccccEEEccC-CccccccccccchhhhhhcccceeccccccchhHHHHHHH----Hhhhhcccccccccc
Confidence 111122367777777777 3444321 1122345677777777777622111111000 000245555555555
Q ss_pred ccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCcccccc-
Q 046577 542 LPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQ- 620 (878)
Q Consensus 542 c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~- 620 (878)
|. +..+.. ++. . .......+++|+.|++.++.......
T Consensus 261 ~~-~~~~~~-----------------------~~~-----~------------~~~~~~~l~~L~~L~l~~~~i~~~~~~ 299 (549)
T 2z81_A 261 CT-LNGLGD-----------------------FNP-----S------------ESDVVSELGKVETVTIRRLHIPQFYLF 299 (549)
T ss_dssp CE-EECCSC-----------------------CCC-----C------------TTTCCCCCTTCCEEEEESCBCSCGGGS
T ss_pred cc-cccccc-----------------------ccc-----c------------chhhhhhhcccccccccccccchhhhc
Confidence 42 111100 000 0 00011334555556655554221100
Q ss_pred ccCc--cccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeeccccccccccccccccceeeccccccc
Q 046577 621 ADFP--QHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHL 698 (878)
Q Consensus 621 ~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L 698 (878)
...+ ...+++|+.|++.++.+..+|.+ +++.+++|+.|++++|.-...++.. +..++.+++|+.|+++++. +
T Consensus 300 ~~l~~~~~~~~~L~~L~l~~n~l~~ip~~-~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~~~~l~~L~~L~Ls~N~-l 373 (549)
T 2z81_A 300 YDLSTVYSLLEKVKRITVENSKVFLVPCS-FSQHLKSLEFLDLSENLMVEEYLKN----SACKGAWPSLQTLVLSQNH-L 373 (549)
T ss_dssp CCCCHHHHHSTTCCEEEEESSCCCCCCHH-HHHHCTTCCEEECCSSCCCHHHHHH----HTCTTSSTTCCEEECTTSC-C
T ss_pred ccchhhhhhcccceEEEeccCccccCCHH-HHhcCccccEEEccCCccccccccc----hhhhhccccCcEEEccCCc-c
Confidence 0000 11246788888877777888876 5578888888888876533322211 1224567888888888864 4
Q ss_pred ccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHHhhcccccEEEEccccccc
Q 046577 699 KQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLGVYGCRAMT 778 (878)
Q Consensus 699 ~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~ 778 (878)
+.++..+ .....+++|++|++++| .++.+ |..+..+++|++|++++|. ++.++. ...++|++|++++| .++
T Consensus 374 ~~~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~~~~L~~L~Ls~N~-l~~l~~----~~~~~L~~L~Ls~N-~l~ 444 (549)
T 2z81_A 374 RSMQKTG-EILLTLKNLTSLDISRN-TFHPM-PDSCQWPEKMRFLNLSSTG-IRVVKT----CIPQTLEVLDVSNN-NLD 444 (549)
T ss_dssp CCHHHHH-HHGGGCTTCCEEECTTC-CCCCC-CSCCCCCTTCCEEECTTSC-CSCCCT----TSCTTCSEEECCSS-CCS
T ss_pred cccccch-hhhhcCCCCCEEECCCC-CCccC-ChhhcccccccEEECCCCC-cccccc----hhcCCceEEECCCC-Chh
Confidence 4433100 00145788888888885 67776 6667788889999988874 665532 11357888999887 566
Q ss_pred ceecccccccccceeeeccccceecccCCCcceeeccCceeecCCcceeecccCCCccccCCC-CCCCCCceEEEeecc
Q 046577 779 EVVINDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEFPSLQELGVICCPKMKIFTTG-ESITPPGVYVWYGET 856 (878)
Q Consensus 779 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~lp~~-~~~~p~L~~l~~~~~ 856 (878)
.++. . +++|++|+++++ +++.+|... .+++|++|++++| +++.++.+ ...++.|+.+++.++
T Consensus 445 ~~~~---~--------l~~L~~L~Ls~N-~l~~ip~~~---~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 445 SFSL---F--------LPRLQELYISRN-KLKTLPDAS---LFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp CCCC---C--------CTTCCEEECCSS-CCSSCCCGG---GCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSS
T ss_pred hhcc---c--------CChhcEEECCCC-ccCcCCCcc---cCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCC
Confidence 5541 2 788899998886 577887643 5788999999886 56666654 346788888888843
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=4.7e-30 Score=302.92 Aligned_cols=162 Identities=17% Similarity=0.112 Sum_probs=72.4
Q ss_pred CCCcceEEeccCCccccccccCccccccCCcEEEEe-cCCCCccchhHHHHHcCCCceEEEeccCccceeeccccccccc
Q 046577 602 LPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIA-EDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKH 680 (878)
Q Consensus 602 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 680 (878)
+.+|+.+++..+....... . ...+++|+.+++. ++.....+.. .+..+++++.++++++ .+..+. +..
T Consensus 396 ~~~L~~L~~~~~~~~~~~~-~--~~~l~~L~~l~l~~~~~~~~~~~~-~~~~l~~l~~l~ls~n-~l~~~~------~~~ 464 (635)
T 4g8a_A 396 TISLKYLDLSFNGVITMSS-N--FLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHT-HTRVAF------NGI 464 (635)
T ss_dssp CSCCCEEECCSCSEEEECS-C--CTTCTTCCEEECTTSEEESTTSSC-TTTTCTTCCEEECTTS-CCEECC------TTT
T ss_pred hhhhhhhhccccccccccc-c--ccccccccchhhhhcccccccccc-cccccccccccccccc-cccccc------ccc
Confidence 4455566655554332211 1 1224555555552 2222222222 3445555555555533 222221 222
Q ss_pred cccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHH
Q 046577 681 VGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTA 760 (878)
Q Consensus 681 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 760 (878)
+..+++|+.|+++++.....+....+ ..+++|++|++++| .++.+.|..+..+++|++|+|+++ +++.++ +..+
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~---~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~-~~~~ 538 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIF---TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLD-TFPY 538 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCC---TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCC-CGGG
T ss_pred cccchhhhhhhhhhcccccccCchhh---hhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCC-hhHH
Confidence 33455555555555543333222211 34455555555553 444444444555555555555553 344443 2334
Q ss_pred hhcccccEEEEccccccccee
Q 046577 761 KTLVRLVSLGVYGCRAMTEVV 781 (878)
Q Consensus 761 ~~l~~L~~L~i~~c~~l~~~~ 781 (878)
.++++|++|+++++ +++.++
T Consensus 539 ~~l~~L~~L~Ls~N-~l~~~~ 558 (635)
T 4g8a_A 539 KCLNSLQVLDYSLN-HIMTSK 558 (635)
T ss_dssp TTCTTCCEEECTTS-CCCBCC
T ss_pred hCCCCCCEEECCCC-cCCCCC
Confidence 45555555555554 344443
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.7e-30 Score=294.51 Aligned_cols=177 Identities=14% Similarity=0.073 Sum_probs=83.1
Q ss_pred CCcceEEeccCCccccccccCccccccCCcEEEEecCCCCc-cchhHHHHHcCCCceEEEeccCccceeecccccccccc
Q 046577 603 PNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAG-FPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKHV 681 (878)
Q Consensus 603 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 681 (878)
++|+.|++++|...... + ...+++|++|++++|.+.. +|.+ +..+++|+.|++++|. ++.++. ++..+
T Consensus 302 ~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~-l~~l~~----~~~~~ 370 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHML---C-PSKISPFLHLDFSNNLLTDTVFEN--CGHLTELETLILQMNQ-LKELSK----IAEMT 370 (520)
T ss_dssp CCCSEEEEESSCCCCCC---C-CSSCCCCCEEECCSSCCCTTTTTT--CCCCSSCCEEECCSSC-CCBHHH----HHHHH
T ss_pred CceeEEEcCCCcccccc---c-hhhCCcccEEEeECCccChhhhhh--hccCCCCCEEEccCCc-cCcccc----chHHH
Confidence 34666666666532211 0 1234566666664444443 3333 4556666666666442 332211 12224
Q ss_pred ccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHHh
Q 046577 682 GKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAK 761 (878)
Q Consensus 682 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 761 (878)
..+++|+.|+++++.--..++...+ ..+++|++|++++|. ++...|..+. ++|+.|++++| +++.++ ..+.
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip--~~~~ 441 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDC---SWTKSLLSLNMSSNI-LTDTIFRCLP--PRIKVLDLHSN-KIKSIP--KQVV 441 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSC---CCCTTCCEEECCSSC-CCGGGGGSCC--TTCCEEECCSS-CCCCCC--GGGG
T ss_pred hhCCCCCEEECCCCcCCcccccchh---ccCccCCEEECcCCC-CCcchhhhhc--ccCCEEECCCC-cccccc--hhhh
Confidence 4555666666655442221332211 334556666666633 3222222111 45666666555 444442 2233
Q ss_pred hcccccEEEEcccccccceecccccccccceeeeccccceecccCC
Q 046577 762 TLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLD 807 (878)
Q Consensus 762 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 807 (878)
.+++|++|++++| .++.+|..... .+++|++|++++++
T Consensus 442 ~l~~L~~L~L~~N-~l~~l~~~~~~-------~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 442 KLEALQELNVASN-QLKSVPDGIFD-------RLTSLQKIWLHTNP 479 (520)
T ss_dssp GCTTCCEEECCSS-CCCCCCTTTTT-------TCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCC-cCCccCHHHhc-------cCCcccEEECcCCC
Confidence 5666666666665 45555543111 15566666665544
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=2.1e-31 Score=311.39 Aligned_cols=318 Identities=16% Similarity=0.165 Sum_probs=162.0
Q ss_pred CCCCCccccccccCccEEEecCcccccc-----------------chhhhc--CCCCCCEEEcCCCCCc-ccchhhcCCC
Q 046577 267 QLFSLPSSIDLLVKLKTLCLDESILRDI-----------------DIAIIG--KLENLEILSFVRSDTV-QLPKALGQLT 326 (878)
Q Consensus 267 ~i~~lp~~~~~l~~L~~L~l~~~~~~~~-----------------~p~~i~--~L~~L~~L~l~~~~l~-~lp~~i~~L~ 326 (878)
+++.+|..++++++|++|++++|.+.+. +|..++ ++++|++|++++|.+. .+|..+++++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 3334566666666666666666666553 566666 6666666666666543 5566666666
Q ss_pred CccEEecCCCCCCC--ccCcchhcCC------ccccEEEcccCcchhHHhhhcccCCCCChh--hhcCCCCCcEEEEEec
Q 046577 327 KLRLLDLTDCFHLK--VIAPNVISSL------IRLEELYMCNCSIEWEVERANSKRSNASLD--ELMHLRWLTTLEIDVK 396 (878)
Q Consensus 327 ~L~~L~l~~~~~l~--~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~ 396 (878)
+|++|++++|..++ .+|.. ++++ ++|++|++++|.+. ..+. .++.+++|+.|++++|
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~------------~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK------------TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS------------SCCCHHHHTTCTTCCEEECCSC
T ss_pred CCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC------------ccCchhhhccCCCCCEEeCcCC
Confidence 66666666664233 35544 4444 66666666666543 2333 5666666666666655
Q ss_pred CCC-cCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccC
Q 046577 397 NES-MLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQS 475 (878)
Q Consensus 397 ~~~-~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~ 475 (878)
... .+| .+ ..+++|++|++++|.++.+ | .+ +..+++
T Consensus 341 ~l~g~ip-~~-----------------------------------~~l~~L~~L~L~~N~l~~l-----p-~~-l~~l~~ 377 (636)
T 4eco_A 341 QLEGKLP-AF-----------------------------------GSEIKLASLNLAYNQITEI-----P-AN-FCGFTE 377 (636)
T ss_dssp CCEEECC-CC-----------------------------------EEEEEESEEECCSSEEEEC-----C-TT-SEEECT
T ss_pred cCccchh-hh-----------------------------------CCCCCCCEEECCCCccccc-----c-Hh-hhhhcc
Confidence 543 333 11 0345555566655554422 1 11 113455
Q ss_pred -ccEEeeccccccccccchhhhcc--cCCcCEEEEeCCchhHH-HhhcccCCCCCCcccCcccceeccccccccccccCC
Q 046577 476 -LTRLIVWRCHKLKYIFSASMIGS--LKQLQHLDIRDCKDLQE-IISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPG 551 (878)
Q Consensus 476 -L~~L~L~~c~~l~~~~~~~~l~~--l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~ 551 (878)
|+.|++++ +.++.+ |. .+.. +++|++|++++|. +.. .+.... ........+++|++|+++++ .++.++..
T Consensus 378 ~L~~L~Ls~-N~l~~l-p~-~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~-~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~ 451 (636)
T 4eco_A 378 QVENLSFAH-NKLKYI-PN-IFDAKSVSVMSAIDFSYNE-IGSVDGKNFD-PLDPTPFKGINVSSINLSNN-QISKFPKE 451 (636)
T ss_dssp TCCEEECCS-SCCSSC-CS-CCCTTCSSCEEEEECCSSC-TTTTTTCSSC-TTCSSCCCCCCEEEEECCSS-CCCSCCTH
T ss_pred cCcEEEccC-CcCccc-ch-hhhhcccCccCEEECcCCc-CCCcchhhhc-ccccccccCCCCCEEECcCC-ccCcCCHH
Confidence 66666665 334443 21 1222 2356666666665 322 221111 00000112456777777663 44443322
Q ss_pred CCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCccccccccCccccccCC
Q 046577 552 MHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSL 631 (878)
Q Consensus 552 ~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 631 (878)
. ...+++|++|++++| .++.+|........ .....+++|+.|++++|.+.. ++..+....+++|
T Consensus 452 ~-~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L 515 (636)
T 4eco_A 452 L-FSTGSPLSSINLMGN-MLTEIPKNSLKDEN-------------ENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYL 515 (636)
T ss_dssp H-HHTTCCCSEEECCSS-CCSBCCSSSSEETT-------------EECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTC
T ss_pred H-HccCCCCCEEECCCC-CCCCcCHHHhcccc-------------ccccccCCccEEECcCCcCCc-cChhhhhccCCCc
Confidence 1 223566777777664 34444321100000 000123477777777776553 2222221245677
Q ss_pred cEEEEecCCCCccchhHHHHHcCCCceEEEecc
Q 046577 632 KRLVIAEDDSAGFPIWNVLERFHNLEILTLFNF 664 (878)
Q Consensus 632 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c 664 (878)
+.|++++|.+..+|.. +..+++|+.|++++|
T Consensus 516 ~~L~Ls~N~l~~ip~~--~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 516 VGIDLSYNSFSKFPTQ--PLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CEEECCSSCCSSCCCG--GGGCSSCCEEECCSC
T ss_pred CEEECCCCCCCCcChh--hhcCCCCCEEECCCC
Confidence 7777766666667665 667777777777643
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.1e-30 Score=305.14 Aligned_cols=418 Identities=13% Similarity=0.101 Sum_probs=257.8
Q ss_pred CCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC-------------CCcc---------------------c
Q 046577 229 PQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF-------------SLPS---------------------S 274 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-------------~lp~---------------------~ 274 (878)
.+++.|+++++..... +|+. |+++++|++|+|++|.+. .+|. .
T Consensus 81 ~~V~~L~L~~~~l~g~--lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR--VPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEE--ECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCc--CChH-HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhh
Confidence 5899999999987654 8876 699999999999999652 1111 1
Q ss_pred cc-------------------cccCccEEEe--cCccccccchhhhcCCCCCCEEEcCCCCCcc----------------
Q 046577 275 ID-------------------LLVKLKTLCL--DESILRDIDIAIIGKLENLEILSFVRSDTVQ---------------- 317 (878)
Q Consensus 275 ~~-------------------~l~~L~~L~l--~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~---------------- 317 (878)
++ ....++.+.+ ..|.+++ +|..++++++|++|++++|.++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 11 0011111111 1467777 88899999999999999998887
Q ss_pred --cchhhc--CCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCc-chhHHhhhcccCCCCChhhhcCC------C
Q 046577 318 --LPKALG--QLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCS-IEWEVERANSKRSNASLDELMHL------R 386 (878)
Q Consensus 318 --lp~~i~--~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l------~ 386 (878)
+|..++ ++++|++|++++|.....+|.. ++++++|++|++++|. +... ..+..++.+ +
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~----------~lp~~~~~L~~~~~l~ 305 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGE----------QLKDDWQALADAPVGE 305 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHH----------HHHHHHHHHHHSGGGG
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccc----------cchHHHHhhhccccCC
Confidence 899888 9999999999999866677766 8999999999999887 5410 134455544 8
Q ss_pred CCcEEEEEecCCCcCCc--hhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccce-eecccC
Q 046577 387 WLTTLEIDVKNESMLPA--GFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVD-KIWHYN 463 (878)
Q Consensus 387 ~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~-~~~~~~ 463 (878)
+|+.|++++|....+|. .+ ..+++|++|++++|.++ .+
T Consensus 306 ~L~~L~L~~n~l~~ip~~~~l-----------------------------------~~l~~L~~L~L~~N~l~g~i---- 346 (636)
T 4eco_A 306 KIQIIYIGYNNLKTFPVETSL-----------------------------------QKMKKLGMLECLYNQLEGKL---- 346 (636)
T ss_dssp TCCEEECCSSCCSSCCCHHHH-----------------------------------TTCTTCCEEECCSCCCEEEC----
T ss_pred CCCEEECCCCcCCccCchhhh-----------------------------------ccCCCCCEEeCcCCcCccch----
Confidence 89999998888766665 22 15788999999998776 43
Q ss_pred CCCCcccccccCccEEeeccccccccccchhhhcccCC-cCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccc
Q 046577 464 QIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQ-LQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDL 542 (878)
Q Consensus 464 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 542 (878)
| .+..+++|+.|++++ +.++.+ | ..+..+++ |++|++++|. ++.++..... ..+++|++|+++++
T Consensus 347 -p---~~~~l~~L~~L~L~~-N~l~~l-p-~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~------~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 347 -P---AFGSEIKLASLNLAY-NQITEI-P-ANFCGFTEQVENLSFAHNK-LKYIPNIFDA------KSVSVMSAIDFSYN 412 (636)
T ss_dssp -C---CCEEEEEESEEECCS-SEEEEC-C-TTSEEECTTCCEEECCSSC-CSSCCSCCCT------TCSSCEEEEECCSS
T ss_pred -h---hhCCCCCCCEEECCC-Cccccc-c-HhhhhhcccCcEEEccCCc-Ccccchhhhh------cccCccCEEECcCC
Confidence 2 122578999999998 456654 3 23788888 9999999888 5555543221 12457888888874
Q ss_pred cccccccCCCCc------CCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCcc
Q 046577 543 PKLRCLYPGMHT------PEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAK 616 (878)
Q Consensus 543 ~~L~~~~~~~~~------~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 616 (878)
.++........ -.+++|+.|++++| .++.+|.. ....+++|+.|++++|.+.
T Consensus 413 -~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~--------------------~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 413 -EIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKE--------------------LFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp -CTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTH--------------------HHHTTCCCSEEECCSSCCS
T ss_pred -cCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHH--------------------HHccCCCCCEEECCCCCCC
Confidence 34332211111 03457777777774 44444321 1133667777777777655
Q ss_pred ccccccCcc-----ccccCCcEEEEecCCCCccchhHHHH--HcCCCceEEEeccCccceeeccccccccccccccccce
Q 046577 617 MILQADFPQ-----HLFGSLKRLVIAEDDSAGFPIWNVLE--RFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKE 689 (878)
Q Consensus 617 ~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~ 689 (878)
.+....+.. ..+++|+.|++++|.+..+|.. +. .+++|+.|++++| .++.+ |..+..+++|+.
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~~~~~l~~L~~L~Ls~N-~l~~i-------p~~~~~l~~L~~ 540 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD--FRATTLPYLVGIDLSYN-SFSKF-------PTQPLNSSTLKG 540 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG--GSTTTCTTCCEEECCSS-CCSSC-------CCGGGGCSSCCE
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCCccChh--hhhccCCCcCEEECCCC-CCCCc-------ChhhhcCCCCCE
Confidence 322222211 0112566666655555566654 33 5666666666643 23322 222334445555
Q ss_pred eecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHHhhcccccEE
Q 046577 690 LELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSL 769 (878)
Q Consensus 690 L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 769 (878)
|++++++.+ ++ +.+....|..+..+++|++|++++|. ++.+|.. + .++|+.|
T Consensus 541 L~Ls~N~~l----------------------s~-N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~--~--~~~L~~L 592 (636)
T 4eco_A 541 FGIRNQRDA----------------------QG-NRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK--I--TPNISVL 592 (636)
T ss_dssp EECCSCBCT----------------------TC-CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC--C--CTTCCEE
T ss_pred EECCCCccc----------------------cc-CcccccChHHHhcCCCCCEEECCCCc-CCccCHh--H--hCcCCEE
Confidence 555433210 11 22232235556666666666666653 3555321 1 1566666
Q ss_pred EEccc
Q 046577 770 GVYGC 774 (878)
Q Consensus 770 ~i~~c 774 (878)
++++|
T Consensus 593 ~Ls~N 597 (636)
T 4eco_A 593 DIKDN 597 (636)
T ss_dssp ECCSC
T ss_pred ECcCC
Confidence 66665
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.8e-30 Score=296.34 Aligned_cols=456 Identities=12% Similarity=0.091 Sum_probs=275.2
Q ss_pred eEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecC
Q 046577 210 YAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDE 288 (878)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~ 288 (878)
++++++++.++.+|..+. ++|++|++++|.... ++...|.++++|++|++++|.++.+ |+.|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISE---LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCC---CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccc---cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 456777777777776554 677777777776654 5555567777777777777777755 56677777777777777
Q ss_pred ccccccchhhhcCCCCCCEEEcCCCCCcc--cchhhcCCCCccEEecCCCCCCCccCcchhcCCccc--cEEEcccCcch
Q 046577 289 SILRDIDIAIIGKLENLEILSFVRSDTVQ--LPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRL--EELYMCNCSIE 364 (878)
Q Consensus 289 ~~~~~~~p~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L--~~L~l~~~~~~ 364 (878)
|.+.. +|.. .+++|++|++++|.++. +|..++++++|++|++++|. +... .++.+++| ++|++++|.+.
T Consensus 79 N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 79 NKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTTT
T ss_pred Cceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeeccccc
Confidence 77765 6655 67777777777777664 45667777777777777766 4431 25566666 77777766551
Q ss_pred hHHhhhcccCCCCChhhhcCCCCCcEEEE--EecCCC-cCCchhhhcccccccccccCcccccccccccccccccccccc
Q 046577 365 WEVERANSKRSNASLDELMHLRWLTTLEI--DVKNES-MLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKV 441 (878)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l--~~~~~~-~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 441 (878)
. ....+..+..+.. +.+.+ +++... .++.. .+ .
T Consensus 152 ~---------~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~-------------------------------~~---~ 187 (520)
T 2z7x_B 152 G---------EKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDV-------------------------------SV---K 187 (520)
T ss_dssp T---------SSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCC-------------------------------CC---T
T ss_pred c---------ccccccccccccc-ceEEEEeccCcchhhhhhh-------------------------------hh---h
Confidence 0 0223334444332 23333 222211 01000 01 1
Q ss_pred cCCCcceeeecccc-------ceeecccCCCCCcccccccCccEEeeccccccccccchhhh--cccCCcCEEEEeCCch
Q 046577 442 ALPNLEALEISEIN-------VDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMI--GSLKQLQHLDIRDCKD 512 (878)
Q Consensus 442 ~~~~L~~L~l~~~~-------l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l--~~l~~L~~L~l~~~~~ 512 (878)
.+++|+.|++++|. +... ++ .+..+++|+.|+++++. +....+.... ...++|++|++++|.
T Consensus 188 ~l~~L~~L~l~~n~~~~~~~~~~~~----~~---~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~- 258 (520)
T 2z7x_B 188 TVANLELSNIKCVLEDNKCSYFLSI----LA---KLQTNPKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVK- 258 (520)
T ss_dssp TCSEEEECCEEECCSTTTTHHHHHH----HH---GGGGCTTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEE-
T ss_pred cccceeeccccccccccccceeecc----hh---hhccccchhhccccccc-cCHHHHHHHHHHhhhCcccEEEeeccc-
Confidence 46667777776653 1110 11 01246677777776632 2221111111 124577777777776
Q ss_pred hH-HHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCC--CCCccEEEEccCCCccchhhhhhccccCCCCCC
Q 046577 513 LQ-EIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPE--WLALEMLFVYRCDKLKIFAADLLQKNENDQLGI 589 (878)
Q Consensus 513 l~-~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~--~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~ 589 (878)
+. .++...... ....+++|+.++++++. + .++....... -++|+.|++++|. +..+
T Consensus 259 l~~~~p~~~~~~---~~~~l~~L~~l~l~~n~-~-~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~--------------- 317 (520)
T 2z7x_B 259 LQGQLDFRDFDY---SGTSLKALSIHQVVSDV-F-GFPQSYIYEIFSNMNIKNFTVSGTR-MVHM--------------- 317 (520)
T ss_dssp EESCCCCCCCCC---CSCCCCEEEEEEEEECC-C-CSCTHHHHHHHHTCCCSEEEEESSC-CCCC---------------
T ss_pred ccCccccchhhc---ccccCceeEeccccccc-e-ecchhhhhcccccCceeEEEcCCCc-cccc---------------
Confidence 33 333322100 00135666666666532 2 2221100000 1457888888763 2222
Q ss_pred CCCCCCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchh-HHHHHcCCCceEEEeccCccc
Q 046577 590 PVQQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIW-NVLERFHNLEILTLFNFSFHE 668 (878)
Q Consensus 590 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~c~~l~ 668 (878)
.....+++|++|++++|......+..+ ..+++|+.|++++|.+..++.. ..+..+++|+.|++++|. +.
T Consensus 318 -------~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~ 387 (520)
T 2z7x_B 318 -------LCPSKISPFLHLDFSNNLLTDTVFENC--GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VS 387 (520)
T ss_dssp -------CCCSSCCCCCEEECCSSCCCTTTTTTC--CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CB
T ss_pred -------cchhhCCcccEEEeECCccChhhhhhh--ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CC
Confidence 111467889999999998766444443 3478999999988887754431 147899999999999764 44
Q ss_pred e-eeccccccccccccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecC
Q 046577 669 E-VFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASG 747 (878)
Q Consensus 669 ~-l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~ 747 (878)
. ++. ..+..+++|++|+++++.--..++.. ..++|++|++++| .++.+ |..+..+++|++|++++
T Consensus 388 ~~l~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~------l~~~L~~L~Ls~N-~l~~i-p~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 388 YDEKK------GDCSWTKSLLSLNMSSNILTDTIFRC------LPPRIKVLDLHSN-KIKSI-PKQVVKLEALQELNVAS 453 (520)
T ss_dssp CCGGG------CSCCCCTTCCEEECCSSCCCGGGGGS------CCTTCCEEECCSS-CCCCC-CGGGGGCTTCCEEECCS
T ss_pred ccccc------chhccCccCCEEECcCCCCCcchhhh------hcccCCEEECCCC-ccccc-chhhhcCCCCCEEECCC
Confidence 3 432 12567899999999998643333321 1279999999995 67777 66677999999999998
Q ss_pred CCCcccccchhHHhhcccccEEEEccccc
Q 046577 748 CKELMHLVTSSTAKTLVRLVSLGVYGCRA 776 (878)
Q Consensus 748 c~~l~~l~~~~~~~~l~~L~~L~i~~c~~ 776 (878)
| .++.++. ..+..+++|++|++++|+-
T Consensus 454 N-~l~~l~~-~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 454 N-QLKSVPD-GIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp S-CCCCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred C-cCCccCH-HHhccCCcccEEECcCCCC
Confidence 7 6777753 3578899999999999854
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2.2e-30 Score=306.90 Aligned_cols=419 Identities=14% Similarity=0.102 Sum_probs=234.7
Q ss_pred CCccEEEcCCCCCccccCcChhhhhCCCCCcEEEe-eCCCCCCC-ccc--------------------------------
Q 046577 229 PQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDF-TGMQLFSL-PSS-------------------------------- 274 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L-~~~~i~~l-p~~-------------------------------- 274 (878)
.+++.|+++++..... +|+. |+++++|++|+| ++|.+... |-.
T Consensus 323 ~~V~~L~Ls~~~L~G~--ip~~-l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~ 399 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR--VPDA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399 (876)
T ss_dssp SCEEEEECTTTCCEEE--ECGG-GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG
T ss_pred CCEEEEECccCCCCCc--CchH-HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchh
Confidence 5788999999887654 8876 589999999999 76644311 100
Q ss_pred -------------------cccccCccEEEec--CccccccchhhhcCCCCCCEEEcCCCCCcc----------------
Q 046577 275 -------------------IDLLVKLKTLCLD--ESILRDIDIAIIGKLENLEILSFVRSDTVQ---------------- 317 (878)
Q Consensus 275 -------------------~~~l~~L~~L~l~--~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~---------------- 317 (878)
......++.+.+. .|.+.+ +|..|+++++|++|++++|.++.
T Consensus 400 ~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~ 478 (876)
T 4ecn_A 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478 (876)
T ss_dssp SCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred hhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccc
Confidence 0111223333333 366777 88889999999999999988887
Q ss_pred --cchhhc--CCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCc-chhHHhhhcccCCCCChhhh-------cCC
Q 046577 318 --LPKALG--QLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCS-IEWEVERANSKRSNASLDEL-------MHL 385 (878)
Q Consensus 318 --lp~~i~--~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l-------~~l 385 (878)
+|..++ ++++|++|++++|.....+|.. ++++++|++|++++|. +... ..+..+ ..+
T Consensus 479 g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~----------~iP~~i~~L~~~~~~l 547 (876)
T 4ecn_A 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAA----------QLKADWTRLADDEDTG 547 (876)
T ss_dssp HHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHH----------HHHHHHHHHHHCTTTT
T ss_pred ccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccc----------cchHHHHhhhhccccc
Confidence 888877 8999999999888766777765 8889999999998886 5420 123333 344
Q ss_pred CCCcEEEEEecCCCcCCc--hhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccC
Q 046577 386 RWLTTLEIDVKNESMLPA--GFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYN 463 (878)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~--~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~ 463 (878)
++|+.|++++|....+|. .+ ..+++|+.|++++|.++.+
T Consensus 548 ~~L~~L~Ls~N~L~~ip~~~~l-----------------------------------~~L~~L~~L~Ls~N~l~~l---- 588 (876)
T 4ecn_A 548 PKIQIFYMGYNNLEEFPASASL-----------------------------------QKMVKLGLLDCVHNKVRHL---- 588 (876)
T ss_dssp TTCCEEECCSSCCCBCCCHHHH-----------------------------------TTCTTCCEEECTTSCCCBC----
T ss_pred CCccEEEeeCCcCCccCChhhh-----------------------------------hcCCCCCEEECCCCCcccc----
Confidence 588888888887666655 22 1567777777777766532
Q ss_pred CCCCcccccccCccEEeeccccccccccchhhhcccCC-cCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccc
Q 046577 464 QIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQ-LQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDL 542 (878)
Q Consensus 464 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 542 (878)
| .+..+++|+.|++++ +.++.+ | ..+..+++ |++|++++|. ++.++..... ...++|+.|+++++
T Consensus 589 -p---~~~~L~~L~~L~Ls~-N~l~~l-p-~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~------~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 589 -E---AFGTNVKLTDLKLDY-NQIEEI-P-EDFCAFTDQVEGLGFSHNK-LKYIPNIFNA------KSVYVMGSVDFSYN 654 (876)
T ss_dssp -C---CCCTTSEESEEECCS-SCCSCC-C-TTSCEECTTCCEEECCSSC-CCSCCSCCCT------TCSSCEEEEECCSS
T ss_pred -h---hhcCCCcceEEECcC-Cccccc-h-HHHhhccccCCEEECcCCC-CCcCchhhhc------cccCCCCEEECcCC
Confidence 2 122567778888877 445544 3 22667777 7778777776 5444432211 01234677777663
Q ss_pred cccccccC----CCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCcccc
Q 046577 543 PKLRCLYP----GMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMI 618 (878)
Q Consensus 543 ~~L~~~~~----~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 618 (878)
.+..... ......+++|+.|++++| .+..+|... ...+++|+.|++++|.+..+
T Consensus 655 -~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~--------------------~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 655 -KIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTEL--------------------FATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp -CTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHH--------------------HHTTCCCSEEECCSCCCSCC
T ss_pred -cCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHH--------------------HccCCCCCEEECCCCcCCcc
Confidence 2322111 000112345666666654 333443211 12355666666666654422
Q ss_pred ccccCcc-----ccccCCcEEEEecCCCCccchhHHHH--HcCCCceEEEeccCccceeeccccccccccccccccceee
Q 046577 619 LQADFPQ-----HLFGSLKRLVIAEDDSAGFPIWNVLE--RFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELE 691 (878)
Q Consensus 619 ~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~ 691 (878)
....+.. ..+++|+.|++++|.+..+|.. +. .+++|+.|+|++| .+..+ |..+..+++|+.|+
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~--l~~~~l~~L~~L~Ls~N-~L~~l-------p~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD--FRATTLPYLSNMDVSYN-CFSSF-------PTQPLNSSQLKAFG 782 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG--GSTTTCTTCCEEECCSS-CCSSC-------CCGGGGCTTCCEEE
T ss_pred ChHHhccccccccccCCccEEECCCCCCccchHH--hhhccCCCcCEEEeCCC-CCCcc-------chhhhcCCCCCEEE
Confidence 2211110 0122555555544444455543 32 4555555555533 22222 22233344444444
Q ss_pred cccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHHhhcccccEEEE
Q 046577 692 LYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLGV 771 (878)
Q Consensus 692 l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i 771 (878)
+++++.+ ++ +.+....|..+..+++|+.|+|++|. +..+|.. -.++|+.|+|
T Consensus 783 Ls~N~~l----------------------s~-N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~----l~~~L~~LdL 834 (876)
T 4ecn_A 783 IRHQRDA----------------------EG-NRILRQWPTGITTCPSLIQLQIGSND-IRKVDEK----LTPQLYILDI 834 (876)
T ss_dssp CCCCBCT----------------------TC-CBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC----CCSSSCEEEC
T ss_pred CCCCCCc----------------------cc-ccccccChHHHhcCCCCCEEECCCCC-CCccCHh----hcCCCCEEEC
Confidence 4433210 11 22332335556666666666666653 3555321 1246666666
Q ss_pred cccc
Q 046577 772 YGCR 775 (878)
Q Consensus 772 ~~c~ 775 (878)
++|+
T Consensus 835 s~N~ 838 (876)
T 4ecn_A 835 ADNP 838 (876)
T ss_dssp CSCT
T ss_pred CCCC
Confidence 6653
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=3.8e-30 Score=304.86 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=64.9
Q ss_pred CCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeecccccccccc
Q 046577 602 LPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKHV 681 (878)
Q Consensus 602 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 681 (878)
+++|+.|++++|.+.. ++..+....+++|+.|++++|.+..+|.. +..+++|+.|++++|..+..- ...+.+|..+
T Consensus 727 l~~L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~--l~~L~~L~~L~Ls~N~~ls~N-~l~~~ip~~l 802 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQ--PLNSSQLKAFGIRHQRDAEGN-RILRQWPTGI 802 (876)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSSCCCG--GGGCTTCCEEECCCCBCTTCC-BCCCCCCTTG
T ss_pred cCCccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCCCCCccchh--hhcCCCCCEEECCCCCCcccc-cccccChHHH
Confidence 4578888888887653 33333222468888888877777778876 778999999999875421110 0011124445
Q ss_pred ccccccceeecccccccccccccCCCCCCcccceeeEEeecc
Q 046577 682 GKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHC 723 (878)
Q Consensus 682 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c 723 (878)
..+++|+.|++++|.- ..++.. .+++|+.|+|++|
T Consensus 803 ~~L~~L~~L~Ls~N~L-~~Ip~~------l~~~L~~LdLs~N 837 (876)
T 4ecn_A 803 TTCPSLIQLQIGSNDI-RKVDEK------LTPQLYILDIADN 837 (876)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSC------CCSSSCEEECCSC
T ss_pred hcCCCCCEEECCCCCC-CccCHh------hcCCCCEEECCCC
Confidence 5566666666666542 444432 1134555555553
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=9.2e-29 Score=291.89 Aligned_cols=527 Identities=17% Similarity=0.147 Sum_probs=264.5
Q ss_pred ccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEecCccccccch
Q 046577 218 CIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDESILRDIDI 296 (878)
Q Consensus 218 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p 296 (878)
+++++|..+. +++++|++++|.+.. +|+..|.++++|++|+|++|+|+.+| .+|+++++|++|+|++|++.+..+
T Consensus 42 ~l~~vP~~lp-~~~~~LdLs~N~i~~---l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 42 NFYKIPDNLP-FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp CCSSCCSSSC-TTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CcCccCCCCC-cCCCEEEeeCCCCCC---CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 4566666553 467888888887765 77766788888888888888888774 467788888888888888877444
Q ss_pred hhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccC-cchhcCCccccEEEcccCcchhHHhhhcccC
Q 046577 297 AIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIA-PNVISSLIRLEELYMCNCSIEWEVERANSKR 374 (878)
Q Consensus 297 ~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 374 (878)
..|+++.+|++|++++|+++.+|.. |+++++|++|++++|. +..++ +..++++++|++|++++|.+.. .
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~--------~ 188 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQS--------I 188 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCE--------E
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccc--------c
Confidence 5678888888888888888777654 7788888888888876 55432 2236778888888888776641 0
Q ss_pred CCCChhhhcCCCC-CcEEEEEecCCCcCCchh-hhcccccccccccCcccccccccccccccccccccccCCCcceeeec
Q 046577 375 SNASLDELMHLRW-LTTLEIDVKNESMLPAGF-LARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEIS 452 (878)
Q Consensus 375 ~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 452 (878)
....+..+..++. +..++++.+....++... ....+..+.+..+.. .... ....+. .++.++...+.
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~-~~~~-------~~~~~~---~l~~l~~~~l~ 257 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD-SLNV-------MKTCIQ---GLAGLEVHRLV 257 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS-SHHH-------HHHHHH---TTTTCEEEEEE
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc-cccc-------cchhhc---CCccccccccc
Confidence 1112333333332 235666666554444332 111222222211100 0000 000011 23444443333
Q ss_pred cccceeecccCCCCCcccccccCccEEeeccccc---cccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcc
Q 046577 453 EINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHK---LKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYF 529 (878)
Q Consensus 453 ~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~---l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 529 (878)
.................+.....+....+..... .... ...+..+.+++.+.+.++. +..+... .
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~-~~~~~~~--~------- 325 (635)
T 4g8a_A 258 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGI--IDLFNCLTNVSSFSLVSVT-IERVKDF--S------- 325 (635)
T ss_dssp EECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEEC--TTTTGGGTTCSEEEEESCE-EEECGGG--G-------
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhcccccch--hhhhhhhcccccccccccc-ccccccc--c-------
Confidence 2211000000000000111234444444433111 1111 1224556677777777665 2222110 0
Q ss_pred cCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEE
Q 046577 530 VFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELS 609 (878)
Q Consensus 530 ~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 609 (878)
..+.|+.|++.++ .+..+. ...++.|+.+.+.+...-... ....+++|+.++
T Consensus 326 ~~~~L~~L~l~~~-~~~~~~----~~~l~~L~~l~l~~n~~~~~~-----------------------~~~~l~~L~~L~ 377 (635)
T 4g8a_A 326 YNFGWQHLELVNC-KFGQFP----TLKLKSLKRLTFTSNKGGNAF-----------------------SEVDLPSLEFLD 377 (635)
T ss_dssp SCCCCSEEEEESC-EESSCC----CCBCTTCCEEEEESCCSCCBC-----------------------CCCBCTTCCEEE
T ss_pred cchhhhhhhcccc-cccCcC----cccchhhhhcccccccCCCCc-----------------------ccccccccccch
Confidence 2456677776664 222222 123566666666653211111 113466777777
Q ss_pred eccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeeccccccccccccccccce
Q 046577 610 LSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKE 689 (878)
Q Consensus 610 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~ 689 (878)
+++|................+|+.+++..+....++.. +..+++|+.+++.+++..... + ...+..+++++.
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~--~~~l~~L~~l~l~~~~~~~~~-~-----~~~~~~l~~l~~ 449 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMS-E-----FSVFLSLRNLIY 449 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC--CTTCTTCCEEECTTSEEESTT-S-----SCTTTTCTTCCE
T ss_pred hhccccccccccccchhhhhhhhhhhcccccccccccc--ccccccccchhhhhccccccc-c-----cccccccccccc
Confidence 77766433222111122235566666644444444433 445566666666544332211 1 112344555566
Q ss_pred eecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHHhhcccccEE
Q 046577 690 LELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSL 769 (878)
Q Consensus 690 L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 769 (878)
++++.+. +..+.... ...+++|+.|+++++.....+.|..+..+++|++|++++| +++.++ +..+.++++|++|
T Consensus 450 l~ls~n~-l~~~~~~~---~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~-~~~f~~l~~L~~L 523 (635)
T 4g8a_A 450 LDISHTH-TRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLS-PTAFNSLSSLQVL 523 (635)
T ss_dssp EECTTSC-CEECCTTT---TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEE
T ss_pred ccccccc-cccccccc---cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcC-hHHHcCCCCCCEE
Confidence 6655433 22211111 1344556666666655555444555555666666666554 444443 2345555666666
Q ss_pred EEcccccccceecccccccccceeeeccccceecccCCCcceeeccCceeec-CCcceeecccC
Q 046577 770 GVYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLDSLTSFCSANYTFEF-PSLQELGVICC 832 (878)
Q Consensus 770 ~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l-~~L~~L~i~~C 832 (878)
++++| +++.++..... .+++|++|+++++ +++.++.... ..+ ++|++|+++++
T Consensus 524 ~Ls~N-~l~~l~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 524 NMSHN-NFFSLDTFPYK-------CLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQN 577 (635)
T ss_dssp ECTTS-CCCBCCCGGGT-------TCTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTC
T ss_pred ECCCC-cCCCCChhHHh-------CCCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCC
Confidence 66664 45554433221 1555666666553 3444443321 123 35555555543
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.6e-28 Score=282.27 Aligned_cols=462 Identities=14% Similarity=0.106 Sum_probs=237.3
Q ss_pred CCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
+...++++++++.... +|..+ .++|++|++++|.+..+| ..|+++++|++|++++|.+.+..|..|+++++|+
T Consensus 30 ~~~~~~l~ls~~~L~~---ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 30 NELESMVDYSNRNLTH---VPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp ---CCEEECTTSCCCS---CCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cCCCcEEEcCCCCCcc---CCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 3344667777766554 66654 267777777777777664 5677777777777777777775567777777777
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCc-chhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCC
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAP-NVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHL 385 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (878)
+|++++|.++.+|.. .+++|++|++++|. +..++. ..++++++|++|++++|.+. ...+..+..+
T Consensus 104 ~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~~~~~l~~L 169 (562)
T 3a79_B 104 YLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QLDLLPVAHL 169 (562)
T ss_dssp EEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC-----------TTTTGGGTTS
T ss_pred EEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc-----------cCchhhhhhc
Confidence 787777777777765 67778888887777 666542 33777778888887777665 1223333333
Q ss_pred CCCcEEEEEecCC--CcC-CchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeeccc
Q 046577 386 RWLTTLEIDVKNE--SML-PAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHY 462 (878)
Q Consensus 386 ~~L~~L~l~~~~~--~~~-~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~ 462 (878)
+|+.|++++|.. ... +..+ ..+. ...+ .++++++.+..
T Consensus 170 -~L~~L~L~~n~l~~~~~~~~~l--~~l~-------------------------------~~~l-~l~l~~n~~~~---- 210 (562)
T 3a79_B 170 -HLSCILLDLVSYHIKGGETESL--QIPN-------------------------------TTVL-HLVFHPNSLFS---- 210 (562)
T ss_dssp -CEEEEEEEESSCCCCSSSCCEE--EECC-------------------------------EEEE-EEEECSSSCCC----
T ss_pred -eeeEEEeecccccccccCcccc--cccC-------------------------------cceE-EEEecCccchh----
Confidence 347888877764 221 1111 0000 0011 22333332211
Q ss_pred CCCCCcccccccCccEEeeccc----cccccccchhhhcccCCcCEEEEeCCch----hHHHhhcccCCCCCCcccCccc
Q 046577 463 NQIPAAVFPHFQSLTRLIVWRC----HKLKYIFSASMIGSLKQLQHLDIRDCKD----LQEIISENRADQVIPYFVFPQL 534 (878)
Q Consensus 463 ~~~~~~~~~~l~~L~~L~L~~c----~~l~~~~~~~~l~~l~~L~~L~l~~~~~----l~~~~~~~~~~~~~~~~~~p~L 534 (878)
..+...+..+++|+.|+++++ ..+.... ..+..+++|+.|++.++.. +..++... ..++|
T Consensus 211 -~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~---------~~~~L 278 (562)
T 3a79_B 211 -VQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLLNVTLQHIETTWKCSVKLFQFF---------WPRPV 278 (562)
T ss_dssp -CCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCEEEEEEEEEECHHHHHHHHHHH---------TTSSE
T ss_pred -hhhhhcccccceEEEecccccccccchHHHHH--HHHhccCcceEEEecCCcCcHHHHHHHHHhh---------hcccc
Confidence 001111113556666666652 1222221 2245666666676665541 11111110 13467
Q ss_pred ceeccccccccc-cccCCCCcCCCCCccEEEEccCC--CccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEec
Q 046577 535 TTLRLQDLPKLR-CLYPGMHTPEWLALEMLFVYRCD--KLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLS 611 (878)
Q Consensus 535 ~~L~l~~c~~L~-~~~~~~~~~~~~~L~~L~l~~C~--~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 611 (878)
++|+++++. ++ .++........++|+.|.+.+.. .+ .+|...+..+ ...++|+.|+++
T Consensus 279 ~~L~l~~n~-l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~-----------------~~~~~L~~L~l~ 339 (562)
T 3a79_B 279 EYLNIYNLT-ITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSV-----------------FAEMNIKMLSIS 339 (562)
T ss_dssp EEEEEEEEE-ECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHH-----------------HHTCCCSEEEEE
T ss_pred cEEEEeccE-eeccccchhhhcccccchheehhhccccee-ecChhhhhhh-----------------hccCcceEEEcc
Confidence 777777643 33 33322111111334444333321 11 2221110000 012456666776
Q ss_pred cCCccccccccCccccccCCcEEEEecCCCCc-cchhHHHHHcCCCceEEEeccCccceeecccccccccccccccccee
Q 046577 612 GKDAKMILQADFPQHLFGSLKRLVIAEDDSAG-FPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKEL 690 (878)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L 690 (878)
+|...... + ...+++|++|++++|.+.. +|.. +..+++|+.|++++| .++.++. ++..+..+++|+.|
T Consensus 340 ~n~~~~~~---~-~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~----~~~~~~~l~~L~~L 408 (562)
T 3a79_B 340 DTPFIHMV---C-PPSPSSFTFLNFTQNVFTDSVFQG--CSTLKRLQTLILQRN-GLKNFFK----VALMTKNMSSLETL 408 (562)
T ss_dssp SSCCCCCC---C-CSSCCCCCEEECCSSCCCTTTTTT--CCSCSSCCEEECCSS-CCCBTTH----HHHTTTTCTTCCEE
T ss_pred CCCccccc---C-ccCCCCceEEECCCCccccchhhh--hcccCCCCEEECCCC-CcCCccc----chhhhcCCCCCCEE
Confidence 66542211 1 1235666777775554444 3433 566667777777654 3443221 12234456666666
Q ss_pred ecccccccccccccCCCCCCcccceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHHhhcccccEEE
Q 046577 691 ELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLG 770 (878)
Q Consensus 691 ~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~ 770 (878)
+++++.--..++...+ ..+++|++|++++|. ++...|..+. ++|++|++++| .++.++ ..+..+++|++|+
T Consensus 409 ~l~~N~l~~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~l~--~~L~~L~L~~N-~l~~ip--~~~~~l~~L~~L~ 479 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTC---AWAESILVLNLSSNM-LTGSVFRCLP--PKVKVLDLHNN-RIMSIP--KDVTHLQALQELN 479 (562)
T ss_dssp ECTTSCCBSCCSSCCC---CCCTTCCEEECCSSC-CCGGGGSSCC--TTCSEEECCSS-CCCCCC--TTTTSSCCCSEEE
T ss_pred ECCCCcCCCccChhhh---cCcccCCEEECCCCC-CCcchhhhhc--CcCCEEECCCC-cCcccC--hhhcCCCCCCEEE
Confidence 6666542222332211 345666667766643 3332233121 46677777665 555553 2223666777777
Q ss_pred EcccccccceecccccccccceeeeccccceecccCC
Q 046577 771 VYGCRAMTEVVINDKDGVEKEEIVFRKLKTLELCDLD 807 (878)
Q Consensus 771 i~~c~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 807 (878)
+++| .++.+|..... .+++|+.|++++++
T Consensus 480 L~~N-~l~~l~~~~~~-------~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 480 VASN-QLKSVPDGVFD-------RLTSLQYIWLHDNP 508 (562)
T ss_dssp CCSS-CCCCCCTTSTT-------TCTTCCCEECCSCC
T ss_pred CCCC-CCCCCCHHHHh-------cCCCCCEEEecCCC
Confidence 7665 55566554111 15666666666654
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=6.2e-28 Score=279.08 Aligned_cols=459 Identities=14% Similarity=0.121 Sum_probs=300.6
Q ss_pred ceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEec
Q 046577 209 CYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLD 287 (878)
Q Consensus 209 ~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~ 287 (878)
.++++++++.++.+|..+. ++|++|++++|.... ++...|.++++|++|++++|.++.+ |+.|+++++|++|+++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISE---LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCC---CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccc---cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 4789999999999998764 899999999999876 7777789999999999999999977 7889999999999999
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccc--hhhcCCCCccEEecCCCCCCCccCcchhcCCccc--cEEEcccCcc
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLP--KALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRL--EELYMCNCSI 363 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L--~~L~l~~~~~ 363 (878)
+|.+.. +|.. .+++|++|++++|.++.+| ..++++++|++|++++|. +.... +..+++| ++|++++|.+
T Consensus 109 ~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 109 HNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 999997 8877 8999999999999998764 789999999999999987 65533 5566666 9999999877
Q ss_pred --hhHHhhhcccCCCCChhhhcCCCCCcEEE--EEecCCCcCCchhhhcccccccccccCcccccccccccccccccccc
Q 046577 364 --EWEVERANSKRSNASLDELMHLRWLTTLE--IDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNE 439 (878)
Q Consensus 364 --~~~~~~~~~~~~~~~~~~l~~l~~L~~L~--l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~ 439 (878)
. ...+..+..+.. +.+. ++.|......... .+.
T Consensus 182 ~~~-----------~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~------------------------------~~~- 218 (562)
T 3a79_B 182 HIK-----------GGETESLQIPNT-TVLHLVFHPNSLFSVQVNM------------------------------SVN- 218 (562)
T ss_dssp CCC-----------SSSCCEEEECCE-EEEEEEECSSSCCCCCCEE------------------------------EES-
T ss_pred ccc-----------ccCcccccccCc-ceEEEEecCccchhhhhhh------------------------------ccc-
Confidence 3 223444554431 3333 3333322111100 011
Q ss_pred cccCCCcceeeecccc--ceeecccCCCCCcccccccCccEEeeccccccccccchhh--hcccCCcCEEEEeCCchhHH
Q 046577 440 KVALPNLEALEISEIN--VDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASM--IGSLKQLQHLDIRDCKDLQE 515 (878)
Q Consensus 440 ~~~~~~L~~L~l~~~~--l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~--l~~l~~L~~L~l~~~~~l~~ 515 (878)
.+++|+.|+++++. ...+. ... + .+..+++|+.|++.++. +........ ....++|++|++++|..-..
T Consensus 219 --~l~~L~~L~l~~n~~~~~~l~-~~~-~--~l~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 291 (562)
T 3a79_B 219 --ALGHLQLSNIKLNDENCQRLM-TFL-S--ELTRGPTLLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291 (562)
T ss_dssp --SEEEEEEEEEECCSTTHHHHH-HHH-H--HHHSCSSCEEEEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEEECSC
T ss_pred --ccceEEEecccccccccchHH-HHH-H--HHhccCcceEEEecCCc-CcHHHHHHHHHhhhcccccEEEEeccEeecc
Confidence 35566666666652 11000 000 0 01135566666666532 221100000 11234777888877762223
Q ss_pred HhhcccCCCCCCcccCcccceeccccccccc-cccCCCCcC--CCCCccEEEEccCCCccchhhhhhccccCCCCCCCCC
Q 046577 516 IISENRADQVIPYFVFPQLTTLRLQDLPKLR-CLYPGMHTP--EWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQ 592 (878)
Q Consensus 516 ~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~-~~~~~~~~~--~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~ 592 (878)
++...... ..++|+.|.+.++..-. .++...... ..++|++|++++|. +..+
T Consensus 292 ip~~~~~~------~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~------------------ 346 (562)
T 3a79_B 292 IDREEFTY------SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHM------------------ 346 (562)
T ss_dssp CCCCCCCC------CSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC-CCCC------------------
T ss_pred ccchhhhc------ccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC-cccc------------------
Confidence 33322110 02455555554432111 111000000 01458888888864 2222
Q ss_pred CCCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchh-HHHHHcCCCceEEEeccCccce-e
Q 046577 593 QPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIW-NVLERFHNLEILTLFNFSFHEE-V 670 (878)
Q Consensus 593 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~c~~l~~-l 670 (878)
.....+++|++|++++|......+..+ ..+++|+.|++++|.+..++.. ..+..+++|+.|++++|. ++. +
T Consensus 347 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~ 419 (562)
T 3a79_B 347 ----VCPPSPSSFTFLNFTQNVFTDSVFQGC--STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHA 419 (562)
T ss_dssp ----CCCSSCCCCCEEECCSSCCCTTTTTTC--CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCC
T ss_pred ----cCccCCCCceEEECCCCccccchhhhh--cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCcc
Confidence 111457889999999988665444433 3478899999988887766531 036788999999999765 433 4
Q ss_pred eccccccccccccccccceeecccccccccccccCCCCCCcc-cceeeEEeecccccccccCCCcccccCccEEEecCCC
Q 046577 671 FSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIF-QYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCK 749 (878)
Q Consensus 671 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~ 749 (878)
+. ..+..+++|++|+++++.--..++ ..+ ++|++|++++| .++.+ |..+..+++|++|+++++
T Consensus 420 ~~------~~~~~l~~L~~L~l~~n~l~~~~~-------~~l~~~L~~L~L~~N-~l~~i-p~~~~~l~~L~~L~L~~N- 483 (562)
T 3a79_B 420 YD------RTCAWAESILVLNLSSNMLTGSVF-------RCLPPKVKVLDLHNN-RIMSI-PKDVTHLQALQELNVASN- 483 (562)
T ss_dssp SS------CCCCCCTTCCEEECCSSCCCGGGG-------SSCCTTCSEEECCSS-CCCCC-CTTTTSSCCCSEEECCSS-
T ss_pred Ch------hhhcCcccCCEEECCCCCCCcchh-------hhhcCcCCEEECCCC-cCccc-ChhhcCCCCCCEEECCCC-
Confidence 32 225578899999999876322222 122 68999999995 78887 655779999999999886
Q ss_pred CcccccchhHHhhcccccEEEEcccccc
Q 046577 750 ELMHLVTSSTAKTLVRLVSLGVYGCRAM 777 (878)
Q Consensus 750 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l 777 (878)
.++.++. ..+..+++|+.|++++++-.
T Consensus 484 ~l~~l~~-~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 484 QLKSVPD-GVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCCCCT-TSTTTCTTCCCEECCSCCBC
T ss_pred CCCCCCH-HHHhcCCCCCEEEecCCCcC
Confidence 6777753 34788999999999998643
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.9e-27 Score=266.53 Aligned_cols=342 Identities=20% Similarity=0.229 Sum_probs=165.6
Q ss_pred cccceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEE
Q 046577 206 LKKCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLC 285 (878)
Q Consensus 206 ~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~ 285 (878)
+++++.|++.++.+..++....+++|++|++++|.... ++. |.++++|++|++++|.+..++. ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~---~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD---ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCC---chh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 34556666655555555433345555555555554432 333 4455555555555555554443 55555555555
Q ss_pred ecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchh
Q 046577 286 LDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEW 365 (878)
Q Consensus 286 l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 365 (878)
+++|.+.+ ++. +.++++|++|++++|.+..+| .++++++|++|++.++ +..++. ++++++|++|++++|.+.
T Consensus 119 L~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~- 190 (466)
T 1o6v_A 119 LFNNQITD-IDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVS- 190 (466)
T ss_dssp CCSSCCCC-CGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred CCCCCCCC-ChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCC-
Confidence 55555544 322 455555555555555544443 2455555555555321 233322 445555555555544433
Q ss_pred HHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCC
Q 046577 366 EVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPN 445 (878)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 445 (878)
.+..+..+++|++|++++|.....+.. ..+++
T Consensus 191 ------------~~~~l~~l~~L~~L~l~~n~l~~~~~~------------------------------------~~l~~ 222 (466)
T 1o6v_A 191 ------------DISVLAKLTNLESLIATNNQISDITPL------------------------------------GILTN 222 (466)
T ss_dssp ------------CCGGGGGCTTCSEEECCSSCCCCCGGG------------------------------------GGCTT
T ss_pred ------------CChhhccCCCCCEEEecCCcccccccc------------------------------------cccCC
Confidence 122344444445544444432221110 02344
Q ss_pred cceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCC
Q 046577 446 LEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQV 525 (878)
Q Consensus 446 L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 525 (878)
|+.|++++|.++ .+. .+..+++|++|++++|. +..++. . .
T Consensus 223 L~~L~l~~n~l~-------------------------------~~~---~l~~l~~L~~L~l~~n~-l~~~~~-~-~--- 262 (466)
T 1o6v_A 223 LDELSLNGNQLK-------------------------------DIG---TLASLTNLTDLDLANNQ-ISNLAP-L-S--- 262 (466)
T ss_dssp CCEEECCSSCCC-------------------------------CCG---GGGGCTTCSEEECCSSC-CCCCGG-G-T---
T ss_pred CCEEECCCCCcc-------------------------------cch---hhhcCCCCCEEECCCCc-cccchh-h-h---
Confidence 444444444333 321 13444445555554444 222211 0 0
Q ss_pred CCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCc
Q 046577 526 IPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNL 605 (878)
Q Consensus 526 ~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 605 (878)
.+++|++|+++++ .++.++. ...+++|+.|++++| +++.++. ...+++|
T Consensus 263 ----~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~----------------------~~~l~~L 311 (466)
T 1o6v_A 263 ----GLTKLTELKLGAN-QISNISP---LAGLTALTNLELNEN-QLEDISP----------------------ISNLKNL 311 (466)
T ss_dssp ----TCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCSCCGG----------------------GGGCTTC
T ss_pred ----cCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCC-cccCchh----------------------hcCCCCC
Confidence 2445555555442 2333222 223555666666554 2333321 1445666
Q ss_pred ceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEeccCccceeecccccccccccccc
Q 046577 606 TELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLA 685 (878)
Q Consensus 606 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~ 685 (878)
+.|++++|......+ ...+++|+.|++++|.+..++. +..+++|+.|++++|. +.+..+ +..++
T Consensus 312 ~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~--------~~~l~ 375 (466)
T 1o6v_A 312 TYLTLYFNNISDISP----VSSLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQ-ISDLTP--------LANLT 375 (466)
T ss_dssp SEEECCSSCCSCCGG----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCBCGG--------GTTCT
T ss_pred CEEECcCCcCCCchh----hccCccCCEeECCCCccCCchh---hccCCCCCEEeCCCCc-cCccch--------hhcCC
Confidence 667776666443322 3346677777776666665532 6677788888887653 443322 44677
Q ss_pred ccceeeccccc
Q 046577 686 TIKELELYRHY 696 (878)
Q Consensus 686 ~L~~L~l~~c~ 696 (878)
+|+.|++++|+
T Consensus 376 ~L~~L~l~~n~ 386 (466)
T 1o6v_A 376 RITQLGLNDQA 386 (466)
T ss_dssp TCCEEECCCEE
T ss_pred CCCEEeccCCc
Confidence 78888887765
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.1e-26 Score=261.80 Aligned_cols=345 Identities=19% Similarity=0.218 Sum_probs=213.6
Q ss_pred CCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCC
Q 046577 256 RKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTD 335 (878)
Q Consensus 256 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 335 (878)
++++.|+++++.+..+|. +..+++|++|++++|.+.+ +|. ++++++|++|++++|.+..++. ++++++|++|++++
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 344444444444444442 4444555555555554444 333 4455555555555555544443 45555555555555
Q ss_pred CCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccc
Q 046577 336 CFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVS 415 (878)
Q Consensus 336 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l 415 (878)
|. +..++. ++++++|++|++++|.+. ....+..+++|+.|+++++ ....+.
T Consensus 122 n~-l~~~~~--~~~l~~L~~L~l~~n~l~-------------~~~~~~~l~~L~~L~l~~~-~~~~~~------------ 172 (466)
T 1o6v_A 122 NQ-ITDIDP--LKNLTNLNRLELSSNTIS-------------DISALSGLTSLQQLSFGNQ-VTDLKP------------ 172 (466)
T ss_dssp SC-CCCCGG--GTTCTTCSEEEEEEEEEC-------------CCGGGTTCTTCSEEEEEES-CCCCGG------------
T ss_pred CC-CCCChH--HcCCCCCCEEECCCCccC-------------CChhhccCCcccEeecCCc-ccCchh------------
Confidence 54 444443 455555555555555443 1223455555555555421 111000
Q ss_pred cccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhh
Q 046577 416 QEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASM 495 (878)
Q Consensus 416 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~ 495 (878)
+..+++|+.|++++|.++.+. . +..+++|+.|++++| .+....+
T Consensus 173 ------------------------~~~l~~L~~L~l~~n~l~~~~-----~---l~~l~~L~~L~l~~n-~l~~~~~--- 216 (466)
T 1o6v_A 173 ------------------------LANLTTLERLDISSNKVSDIS-----V---LAKLTNLESLIATNN-QISDITP--- 216 (466)
T ss_dssp ------------------------GTTCTTCCEEECCSSCCCCCG-----G---GGGCTTCSEEECCSS-CCCCCGG---
T ss_pred ------------------------hccCCCCCEEECcCCcCCCCh-----h---hccCCCCCEEEecCC-ccccccc---
Confidence 014566666666666554321 1 124678888888874 4555544
Q ss_pred hcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchh
Q 046577 496 IGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFA 575 (878)
Q Consensus 496 l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp 575 (878)
++.+++|++|++++|. ++.++. . ..+++|++|+++++ .++.... ...+++|++|++++| .+..++
T Consensus 217 ~~~l~~L~~L~l~~n~-l~~~~~-l--------~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~ 281 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQ-LKDIGT-L--------ASLTNLTDLDLANN-QISNLAP---LSGLTKLTELKLGAN-QISNIS 281 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-G--------GGCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCCCCG
T ss_pred ccccCCCCEEECCCCC-cccchh-h--------hcCCCCCEEECCCC-ccccchh---hhcCCCCCEEECCCC-ccCccc
Confidence 6778999999999987 554421 1 14899999999995 4555433 456899999999996 455443
Q ss_pred hhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCC
Q 046577 576 ADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHN 655 (878)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 655 (878)
. ...+++|+.|++++|......+ ...+++|+.|++++|.+..++. +..+++
T Consensus 282 ~----------------------~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~---~~~l~~ 332 (466)
T 1o6v_A 282 P----------------------LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP---VSSLTK 332 (466)
T ss_dssp G----------------------GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGG---GGGCTT
T ss_pred c----------------------ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchh---hccCcc
Confidence 1 2568999999999998655432 4568999999998887777665 578999
Q ss_pred CceEEEeccCccceeeccccccccccccccccceeecccccccccccccCCCCCCcccceeeEEeecccccccc
Q 046577 656 LEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQSLLIL 729 (878)
Q Consensus 656 L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~l 729 (878)
|+.|++++| .+..++ .+..+++|+.|++++|+- ..+.. ...+++|+.|++++|+ ++.+
T Consensus 333 L~~L~l~~n-~l~~~~--------~l~~l~~L~~L~l~~n~l-~~~~~-----~~~l~~L~~L~l~~n~-~~~~ 390 (466)
T 1o6v_A 333 LQRLFFYNN-KVSDVS--------SLANLTNINWLSAGHNQI-SDLTP-----LANLTRITQLGLNDQA-WTNA 390 (466)
T ss_dssp CCEEECCSS-CCCCCG--------GGTTCTTCCEEECCSSCC-CBCGG-----GTTCTTCCEEECCCEE-EECC
T ss_pred CCEeECCCC-ccCCch--------hhccCCCCCEEeCCCCcc-Cccch-----hhcCCCCCEEeccCCc-ccCC
Confidence 999999977 555542 266799999999999863 33322 3678999999999954 5554
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1e-27 Score=267.41 Aligned_cols=406 Identities=17% Similarity=0.106 Sum_probs=178.9
Q ss_pred CCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCC-------------CCEEEcCCCCCcccchh
Q 046577 255 MRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLEN-------------LEILSFVRSDTVQLPKA 321 (878)
Q Consensus 255 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~-------------L~~L~l~~~~l~~lp~~ 321 (878)
..+|++|++++|.+..+|++++++++|++|++++|.+.+.+|..++++.+ +++|++++|.++.+|..
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 45566666666666556666666666666666666655555666655554 37777777777766652
Q ss_pred hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCC-CCCcEEEEEecCCCc
Q 046577 322 LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHL-RWLTTLEIDVKNESM 400 (878)
Q Consensus 322 i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 400 (878)
.++|++|++++|. ++.+|.. +++|++|++++|.+. . +... ++|++|++++|....
T Consensus 90 ---~~~L~~L~l~~n~-l~~lp~~----~~~L~~L~l~~n~l~-------------~---l~~~~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 90 ---PPHLESLVASCNS-LTELPEL----PQSLKSLLVDNNNLK-------------A---LSDLPPLLEYLGVSNNQLEK 145 (454)
T ss_dssp ---CTTCSEEECCSSC-CSSCCCC----CTTCCEEECCSSCCS-------------C---CCSCCTTCCEEECCSSCCSS
T ss_pred ---cCCCCEEEccCCc-CCccccc----cCCCcEEECCCCccC-------------c---ccCCCCCCCEEECcCCCCCC
Confidence 3567777777776 6666642 366777777776554 0 1111 467777777665544
Q ss_pred CCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEe
Q 046577 401 LPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLI 480 (878)
Q Consensus 401 ~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~ 480 (878)
+|. + ..+++|++|++++|.++.+ |. ..++|++|+
T Consensus 146 lp~-~-----------------------------------~~l~~L~~L~l~~N~l~~l-----p~-----~~~~L~~L~ 179 (454)
T 1jl5_A 146 LPE-L-----------------------------------QNSSFLKIIDVDNNSLKKL-----PD-----LPPSLEFIA 179 (454)
T ss_dssp CCC-C-----------------------------------TTCTTCCEEECCSSCCSCC-----CC-----CCTTCCEEE
T ss_pred Ccc-c-----------------------------------CCCCCCCEEECCCCcCccc-----CC-----CcccccEEE
Confidence 331 1 1466777777777655532 21 135677777
Q ss_pred eccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCc
Q 046577 481 VWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLAL 560 (878)
Q Consensus 481 L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L 560 (878)
+++ +.++.+ |. ++.+++|++|++++|. ++.++. ..++|++|+++++ .++.++. ...+++|
T Consensus 180 L~~-n~l~~l-~~--~~~l~~L~~L~l~~N~-l~~l~~-----------~~~~L~~L~l~~n-~l~~lp~---~~~l~~L 239 (454)
T 1jl5_A 180 AGN-NQLEEL-PE--LQNLPFLTAIYADNNS-LKKLPD-----------LPLSLESIVAGNN-ILEELPE---LQNLPFL 239 (454)
T ss_dssp CCS-SCCSSC-CC--CTTCTTCCEEECCSSC-CSSCCC-----------CCTTCCEEECCSS-CCSSCCC---CTTCTTC
T ss_pred CcC-CcCCcC-cc--ccCCCCCCEEECCCCc-CCcCCC-----------CcCcccEEECcCC-cCCcccc---cCCCCCC
Confidence 776 355554 21 5667777777777765 333221 2346677777664 4444432 3346666
Q ss_pred cEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCccccccccCccccccCCcEEEEecCC
Q 046577 561 EMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDD 640 (878)
Q Consensus 561 ~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 640 (878)
++|++++| +++.+| ..+++|+.|++++|....+ + . .+++|+.|++++|.
T Consensus 240 ~~L~l~~N-~l~~l~------------------------~~~~~L~~L~l~~N~l~~l-~----~-~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 240 TTIYADNN-LLKTLP------------------------DLPPSLEALNVRDNYLTDL-P----E-LPQSLTFLDVSENI 288 (454)
T ss_dssp CEEECCSS-CCSSCC------------------------SCCTTCCEEECCSSCCSCC-C----C-CCTTCCEEECCSSC
T ss_pred CEEECCCC-cCCccc------------------------ccccccCEEECCCCccccc-C----c-ccCcCCEEECcCCc
Confidence 66666664 344332 2235666666666654331 1 1 13556666665555
Q ss_pred CCccchhHHHHHcCCCceEEEeccCccceeeccccccccccccccccceeecccccccccccccCCCCCCcccceeeEEe
Q 046577 641 SAGFPIWNVLERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKV 720 (878)
Q Consensus 641 ~~~~~~~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l 720 (878)
+..++.. .++|+.|++++| .++.++. ..++|+.|+++++. ++.++. .+++|++|++
T Consensus 289 l~~l~~~-----~~~L~~L~l~~N-~l~~i~~----------~~~~L~~L~Ls~N~-l~~lp~-------~~~~L~~L~L 344 (454)
T 1jl5_A 289 FSGLSEL-----PPNLYYLNASSN-EIRSLCD----------LPPSLEELNVSNNK-LIELPA-------LPPRLERLIA 344 (454)
T ss_dssp CSEESCC-----CTTCCEEECCSS-CCSEECC----------CCTTCCEEECCSSC-CSCCCC-------CCTTCCEEEC
T ss_pred cCcccCc-----CCcCCEEECcCC-cCCcccC----------CcCcCCEEECCCCc-cccccc-------cCCcCCEEEC
Confidence 5555432 246666666644 3333211 12356666665532 333321 2356666666
Q ss_pred ecccccccccCCCcccccCccEEEecCCCCcccccc-hhHHhhcccccEEEEcccccccceecccccccccceeeecccc
Q 046577 721 YHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVT-SSTAKTLVRLVSLGVYGCRAMTEVVINDKDGVEKEEIVFRKLK 799 (878)
Q Consensus 721 ~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~l~~L~ 799 (878)
++| .++.+ |. .+++|++|+++++ .++.++. +. ++..|. .+.....+|. .+++|+
T Consensus 345 ~~N-~l~~l-p~---~l~~L~~L~L~~N-~l~~l~~ip~------~l~~L~--~n~~~~~i~~-----------~~~~L~ 399 (454)
T 1jl5_A 345 SFN-HLAEV-PE---LPQNLKQLHVEYN-PLREFPDIPE------SVEDLR--MNSHLAEVPE-----------LPQNLK 399 (454)
T ss_dssp CSS-CCSCC-CC---CCTTCCEEECCSS-CCSSCCCCCT------TCCEEE--CCC------------------------
T ss_pred CCC-ccccc-cc---hhhhccEEECCCC-CCCcCCCChH------HHHhhh--hccccccccc-----------ccCcCC
Confidence 653 44444 33 3456666666554 3333210 11 122221 1222222221 147788
Q ss_pred ceecccCCCcceeeccCceeecCCcceeecccCCCcc
Q 046577 800 TLELCDLDSLTSFCSANYTFEFPSLQELGVICCPKMK 836 (878)
Q Consensus 800 ~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 836 (878)
+|++++++ ++.++.. -++|+.|.+.+|.-..
T Consensus 400 ~L~ls~N~-l~~~~~i-----P~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 400 QLHVETNP-LREFPDI-----PESVEDLRMNSERVVD 430 (454)
T ss_dssp -------------------------------------
T ss_pred EEECCCCc-CCccccc-----hhhHhheeCcCcccCC
Confidence 88888754 4433221 1456777777765433
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=4.1e-27 Score=262.51 Aligned_cols=264 Identities=18% Similarity=0.109 Sum_probs=112.2
Q ss_pred CCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC-CCccccccccCc-------------cEEEecCccccc
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF-SLPSSIDLLVKL-------------KTLCLDESILRD 293 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~L-------------~~L~l~~~~~~~ 293 (878)
.++||+|++++|.... +|.+ |+++++|++|++++|.+. .+|.+++.+.+| ++|++++|.+.+
T Consensus 10 ~~~L~~L~l~~n~l~~---iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTE---MPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccchhhhcccCchhh---CChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 3445555555554421 5544 355555555555555544 445555554443 555555555554
Q ss_pred cchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhccc
Q 046577 294 IDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSK 373 (878)
Q Consensus 294 ~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 373 (878)
+|.. .++|++|++++|.++.+|.. +++|++|++++|. +..++.. .++|++|++++|.+.
T Consensus 86 -lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l~--------- 144 (454)
T 1jl5_A 86 -LPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQLE--------- 144 (454)
T ss_dssp -CCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCCS---------
T ss_pred -CCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCCC---------
Confidence 4431 24555555555555555532 2455555555554 4444321 145555555555443
Q ss_pred CCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeecc
Q 046577 374 RSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISE 453 (878)
Q Consensus 374 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~ 453 (878)
+ .+ +++.+++|++|++++|....+|... .+|+.++++.+.++.+. .+ ..+++|++|++++
T Consensus 145 --~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~-----------~~---~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 145 --K-LP-ELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELP-----------EL---QNLPFLTAIYADN 204 (454)
T ss_dssp --S-CC-CCTTCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-----------CC---TTCTTCCEEECCS
T ss_pred --C-Cc-ccCCCCCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCc-----------cc---cCCCCCCEEECCC
Confidence 1 11 3555555555555555544333221 12222222222222110 01 1466666666666
Q ss_pred ccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcc
Q 046577 454 INVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQ 533 (878)
Q Consensus 454 ~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~ 533 (878)
|.++.+ |. ..++|+.|++++| .++.+ |. ++.+++|++|++++|. ++.++. .+++
T Consensus 205 N~l~~l-----~~-----~~~~L~~L~l~~n-~l~~l-p~--~~~l~~L~~L~l~~N~-l~~l~~-----------~~~~ 258 (454)
T 1jl5_A 205 NSLKKL-----PD-----LPLSLESIVAGNN-ILEEL-PE--LQNLPFLTTIYADNNL-LKTLPD-----------LPPS 258 (454)
T ss_dssp SCCSSC-----CC-----CCTTCCEEECCSS-CCSSC-CC--CTTCTTCCEEECCSSC-CSSCCS-----------CCTT
T ss_pred CcCCcC-----CC-----CcCcccEEECcCC-cCCcc-cc--cCCCCCCCEEECCCCc-CCcccc-----------cccc
Confidence 654421 11 1345666666663 44443 21 4566666666666655 332221 2455
Q ss_pred cceeccccccccccccCCCCcCCCCCccEEEEccC
Q 046577 534 LTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRC 568 (878)
Q Consensus 534 L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C 568 (878)
|++|+++++ .++.++. .+++|+.|++++|
T Consensus 259 L~~L~l~~N-~l~~l~~-----~~~~L~~L~ls~N 287 (454)
T 1jl5_A 259 LEALNVRDN-YLTDLPE-----LPQSLTFLDVSEN 287 (454)
T ss_dssp CCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred cCEEECCCC-cccccCc-----ccCcCCEEECcCC
Confidence 666666553 3333321 1345555555553
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.3e-25 Score=250.72 Aligned_cols=309 Identities=18% Similarity=0.178 Sum_probs=184.0
Q ss_pred cccceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEE
Q 046577 206 LKKCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLC 285 (878)
Q Consensus 206 ~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~ 285 (878)
++++++|+++++.+..+|....+++|++|++++|.... +| +..+++|++|++++|.++.+| ++.+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~---~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT---LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC---CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe---Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 45666666666666665533356666666666665543 43 456666666666666666654 56666666666
Q ss_pred ecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchh
Q 046577 286 LDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEW 365 (878)
Q Consensus 286 l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 365 (878)
+++|.+.+ +| ++.+++|++|++++|.++.++ ++++++|++|++++|..++.++ ++.+++|++|++++|.+.
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~- 183 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT- 183 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC-
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc-
Confidence 66666665 43 566666666666666666553 5666666666666665455442 556666666666666554
Q ss_pred HHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCC
Q 046577 366 EVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPN 445 (878)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 445 (878)
+ +. ++.+++|+.|++++|....++ +..+++
T Consensus 184 ----------~--l~-l~~l~~L~~L~l~~N~l~~~~-------------------------------------l~~l~~ 213 (457)
T 3bz5_A 184 ----------E--LD-VSQNKLLNRLNCDTNNITKLD-------------------------------------LNQNIQ 213 (457)
T ss_dssp ----------C--CC-CTTCTTCCEEECCSSCCSCCC-------------------------------------CTTCTT
T ss_pred ----------e--ec-cccCCCCCEEECcCCcCCeec-------------------------------------cccCCC
Confidence 1 11 455566666666655443221 014677
Q ss_pred cceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCC
Q 046577 446 LEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQV 525 (878)
Q Consensus 446 L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 525 (878)
|+.|++++|.++.+ | . ..+++|+.|++++ +.++.+ + .+.+++|+.|++++
T Consensus 214 L~~L~Ls~N~l~~i-----p-~---~~l~~L~~L~l~~-N~l~~~-~---~~~l~~L~~L~l~~---------------- 263 (457)
T 3bz5_A 214 LTFLDCSSNKLTEI-----D-V---TPLTQLTYFDCSV-NPLTEL-D---VSTLSKLTTLHCIQ---------------- 263 (457)
T ss_dssp CSEEECCSSCCSCC-----C-C---TTCTTCSEEECCS-SCCSCC-C---CTTCTTCCEEECTT----------------
T ss_pred CCEEECcCCccccc-----C-c---cccCCCCEEEeeC-CcCCCc-C---HHHCCCCCEEeccC----------------
Confidence 77777777766542 2 1 1467777777777 455554 2 35566777766532
Q ss_pred CCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCc
Q 046577 526 IPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNL 605 (878)
Q Consensus 526 ~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 605 (878)
.+|+.|++++|..+..++. ..+++|+.|++++|+.+..+|. ..++|
T Consensus 264 ------n~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~------------------------~~~~L 309 (457)
T 3bz5_A 264 ------TDLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDC------------------------QAAGI 309 (457)
T ss_dssp ------CCCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEEC------------------------TTCCC
T ss_pred ------CCCCEEECCCCccCCcccc----cccccCCEEECCCCcccceecc------------------------CCCcc
Confidence 3466677777665555542 3468888888888877776652 23445
Q ss_pred ceEEeccCCccccccccCccccccCCcEEEEecCCCCccchhHHHHHcCCCceEEEecc
Q 046577 606 TELSLSGKDAKMILQADFPQHLFGSLKRLVIAEDDSAGFPIWNVLERFHNLEILTLFNF 664 (878)
Q Consensus 606 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c 664 (878)
+.|++++| ++|+.|++++|.++.++ +..+++|+.|+++++
T Consensus 310 ~~L~l~~~---------------~~L~~L~L~~N~l~~l~----l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 310 TELDLSQN---------------PKLVYLYLNNTELTELD----VSHNTKLKSLSCVNA 349 (457)
T ss_dssp SCCCCTTC---------------TTCCEEECTTCCCSCCC----CTTCTTCSEEECCSS
T ss_pred eEechhhc---------------ccCCEEECCCCcccccc----cccCCcCcEEECCCC
Confidence 55544443 45666666666655553 446777777777743
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.2e-26 Score=259.35 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=92.9
Q ss_pred EEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC-CC-ccccccccCccEEEecCc
Q 046577 212 ISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF-SL-PSSIDLLVKLKTLCLDES 289 (878)
Q Consensus 212 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~l-p~~~~~l~~L~~L~l~~~ 289 (878)
+..+++.++.+|. -.++|++|++++|.... ++...|.++++|++|++++|.+. .+ |..|+++++|++|++++|
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIAE---LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCCE---ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccCc---CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 3444445555555 22567777777766544 44444567777777777777665 33 455677777777777777
Q ss_pred cccccchhhhcCCCCCCEEEcCCCCCcc-cchh--hcCCCCccEEecCCCCCCCcc-CcchhcCCccccEEEcccCcch
Q 046577 290 ILRDIDIAIIGKLENLEILSFVRSDTVQ-LPKA--LGQLTKLRLLDLTDCFHLKVI-APNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 290 ~~~~~~p~~i~~L~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
.+.+..|..|+++++|++|++++|.++. +|.. ++++++|++|++++|. +..+ |...++++++|++|++++|.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCccc
Confidence 7766556677777777777777776663 3333 6667777777777776 5554 3333566777777777776654
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=5.6e-26 Score=250.08 Aligned_cols=308 Identities=15% Similarity=0.211 Sum_probs=223.4
Q ss_pred CCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEecCccccccchhhhcCCC
Q 046577 225 ALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLE 303 (878)
Q Consensus 225 ~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~ 303 (878)
...++++++|++.++.... +|..+|..+++|++|++++|.+..++ ..++.+++|++|++++|.+.+..|..+++++
T Consensus 41 ~~~l~~l~~l~l~~~~l~~---l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp SGGGCCCSEEEEESCEESE---ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccccCCceEEEecCCchhh---CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 3467889999998887655 89888899999999999999998775 5889999999999999999986677789999
Q ss_pred CCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhh
Q 046577 304 NLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDEL 382 (878)
Q Consensus 304 ~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 382 (878)
+|++|++++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+. .. .+
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~---~~ 182 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------HV---DL 182 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS-----------BC---CG
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC-----------cc---cc
Confidence 999999999999999887 5889999999999998 78887766899999999999998876 11 35
Q ss_pred cCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeeccc
Q 046577 383 MHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHY 462 (878)
Q Consensus 383 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~ 462 (878)
+.+++|+.|+++++....++ ..++|++|++++|.++.+..
T Consensus 183 ~~l~~L~~L~l~~n~l~~~~---------------------------------------~~~~L~~L~l~~n~l~~~~~- 222 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTLA---------------------------------------IPIAVEELDASHNSINVVRG- 222 (390)
T ss_dssp GGCTTCSEEECCSSCCSEEE---------------------------------------CCSSCSEEECCSSCCCEEEC-
T ss_pred ccccccceeecccccccccC---------------------------------------CCCcceEEECCCCeeeeccc-
Confidence 66788999988876543221 35678888998887765421
Q ss_pred CCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccc
Q 046577 463 NQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDL 542 (878)
Q Consensus 463 ~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 542 (878)
. .+++|+.|++++ +.++.. ..++.+++|++|++++|. ++.++..... .+++|++|++++
T Consensus 223 ----~----~~~~L~~L~l~~-n~l~~~---~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~L~~- 281 (390)
T 3o6n_A 223 ----P----VNVELTILKLQH-NNLTDT---AWLLNYPGLVEVDLSYNE-LEKIMYHPFV-------KMQRLERLYISN- 281 (390)
T ss_dssp ----C----CCSSCCEEECCS-SCCCCC---GGGGGCTTCSEEECCSSC-CCEEESGGGT-------TCSSCCEEECCS-
T ss_pred ----c----ccccccEEECCC-CCCccc---HHHcCCCCccEEECCCCc-CCCcChhHcc-------ccccCCEEECCC-
Confidence 1 257899999988 456654 237888899999998887 5544322222 377888888877
Q ss_pred cccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCcccccccc
Q 046577 543 PKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQAD 622 (878)
Q Consensus 543 ~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 622 (878)
++++.++.. ...+++|++|++++| .++.+|.. ...+++|+.|++++|.+..+
T Consensus 282 n~l~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~---------------------~~~l~~L~~L~L~~N~i~~~---- 333 (390)
T 3o6n_A 282 NRLVALNLY--GQPIPTLKVLDLSHN-HLLHVERN---------------------QPQFDRLENLYLDHNSIVTL---- 333 (390)
T ss_dssp SCCCEEECS--SSCCTTCCEEECCSS-CCCCCGGG---------------------HHHHTTCSEEECCSSCCCCC----
T ss_pred CcCcccCcc--cCCCCCCCEEECCCC-cceecCcc---------------------ccccCcCCEEECCCCcccee----
Confidence 355555432 234677777777775 45544321 13456667777766664332
Q ss_pred CccccccCCcEEEEecCC
Q 046577 623 FPQHLFGSLKRLVIAEDD 640 (878)
Q Consensus 623 ~~~~~~~~L~~L~l~~~~ 640 (878)
+...+++|+.|++++|.
T Consensus 334 -~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 334 -KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCTTCCCSEEECCSSC
T ss_pred -CchhhccCCEEEcCCCC
Confidence 12234455555554443
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.2e-25 Score=253.38 Aligned_cols=377 Identities=17% Similarity=0.202 Sum_probs=260.5
Q ss_pred eeCCCCCCCCCccccccceEEEEeccccccCCC-CC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC
Q 046577 192 VENEDVWELPDKESLKKCYAISIRYCCIHELPN-AL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF 269 (878)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~ 269 (878)
..+.++..+|. .++++++|++++|.+..++. .+ .+++|++|++++|..... ++...|.++++|++|++++|.+.
T Consensus 17 c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~--i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 17 CINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV--IRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp CCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE--ECTTTTTTCTTCCEEECTTCTTC
T ss_pred cCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce--ECcccccccccCCEEeCCCCccC
Confidence 34445666665 45789999999999988744 34 899999999999987544 77777899999999999999999
Q ss_pred CC-ccccccccCccEEEecCccccccchhh--hcCCCCCCEEEcCCCCCccc-chh-hcCCCCccEEecCCCCCCCccCc
Q 046577 270 SL-PSSIDLLVKLKTLCLDESILRDIDIAI--IGKLENLEILSFVRSDTVQL-PKA-LGQLTKLRLLDLTDCFHLKVIAP 344 (878)
Q Consensus 270 ~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~--i~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~l~~~~~ 344 (878)
.+ |..++++++|++|++++|.+.+..|.. ++++++|++|++++|.+..+ |.. ++++++|++|++++|. +..++.
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 171 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICE 171 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccCh
Confidence 66 889999999999999999998755665 99999999999999999877 555 8999999999999998 776665
Q ss_pred chhcCC--ccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcC-Cchh----hhcccccccccc
Q 046577 345 NVISSL--IRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESML-PAGF----LARKLERQVSQE 417 (878)
Q Consensus 345 ~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~----~~~~L~~l~l~~ 417 (878)
..+..+ .+|+.|++++|.+...... .........+..+++|++|++++|..... +..+ ...+++.+.+..
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEY---WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTT---CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred hhhhccccccccccccccCcccccchh---hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 557766 7899999998877510000 00000011234567899999998875432 2222 125666666654
Q ss_pred cCcccccccccccccccc-cccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhh
Q 046577 418 ESTTTYCSSEITLDTSTL-LFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMI 496 (878)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~-~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l 496 (878)
+................+ .+.+ ...++|+.|++++|.++.+.... +..+++|+.|++++ +.++.+.+ ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~L~Ls~-n~l~~~~~-~~~ 319 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFALLKSV------FSHFTDLEQLTLAQ-NEINKIDD-NAF 319 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEECTTT------TTTCTTCCEEECTT-SCCCEECT-TTT
T ss_pred ccccccccchhhhccCccccccc-ccccCceEEEecCccccccchhh------cccCCCCCEEECCC-CcccccCh-hHh
Confidence 432221111000000000 0110 12468999999998777542222 22578899999988 45666533 347
Q ss_pred cccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhh
Q 046577 497 GSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAA 576 (878)
Q Consensus 497 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~ 576 (878)
+.+++|++|++++|. ++.++..... .+++|++|+++++ .++.+.... ...+++|++|+++++ +++.+|.
T Consensus 320 ~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 320 WGLTHLLKLNLSQNF-LGSIDSRMFE-------NLDKLEVLDLSYN-HIRALGDQS-FLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEECGGGGT-------TCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCSCCCT
T ss_pred cCcccCCEEECCCCc-cCCcChhHhc-------CcccCCEEECCCC-cccccChhh-ccccccccEEECCCC-ccccCCH
Confidence 788999999999887 5555333322 4888999999884 566554332 345788999999884 5666542
Q ss_pred hhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCcc
Q 046577 577 DLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAK 616 (878)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 616 (878)
. ....+++|+.|++++|+..
T Consensus 389 ~--------------------~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 389 G--------------------IFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp T--------------------TTTTCTTCCEEECCSSCBC
T ss_pred h--------------------HhccCCcccEEEccCCCcc
Confidence 1 1245778888888888743
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=8.4e-25 Score=236.78 Aligned_cols=304 Identities=19% Similarity=0.193 Sum_probs=233.9
Q ss_pred cccccceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccE
Q 046577 204 ESLKKCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKT 283 (878)
Q Consensus 204 ~~~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~ 283 (878)
..++++++|+++++.+..++....+++|++|++++|.... ++. |.++++|++|++++|.+..+| .+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~---~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD---ISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCcccc---chh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 3467888999999888888765578999999999987754 655 788999999999999988876 5889999999
Q ss_pred EEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcc
Q 046577 284 LCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSI 363 (878)
Q Consensus 284 L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 363 (878)
|++++|.+.. ++. +..+++|++|++++|.....+..+..+++|++|++++|. +..++. ++.+++|++|++++|.+
T Consensus 115 L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcc
Confidence 9999999887 555 889999999999999554444558899999999999987 777765 78899999999998876
Q ss_pred hhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccC
Q 046577 364 EWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVAL 443 (878)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 443 (878)
. ....+..+++|+.|+++++.....+....+++|+.++++++.+..... + ..+
T Consensus 190 ~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-----------~---~~l 242 (347)
T 4fmz_A 190 E-------------DISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-----------L---ANL 242 (347)
T ss_dssp C-------------CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-----------G---TTC
T ss_pred c-------------ccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-----------h---hcC
Confidence 5 233377888999999998887766654466778888777766655422 1 268
Q ss_pred CCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCC
Q 046577 444 PNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRAD 523 (878)
Q Consensus 444 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 523 (878)
++|++|++++|.++.+. . +..+++|+.|++++| .++.+ + .+..+++|++|++++|. +...+.....
T Consensus 243 ~~L~~L~l~~n~l~~~~--~------~~~l~~L~~L~l~~n-~l~~~-~--~~~~l~~L~~L~L~~n~-l~~~~~~~l~- 308 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDIN--A------VKDLTKLKMLNVGSN-QISDI-S--VLNNLSQLNSLFLNNNQ-LGNEDMEVIG- 308 (347)
T ss_dssp TTCCEEECCSSCCCCCG--G------GTTCTTCCEEECCSS-CCCCC-G--GGGGCTTCSEEECCSSC-CCGGGHHHHH-
T ss_pred CCCCEEECCCCccCCCh--h------HhcCCCcCEEEccCC-ccCCC-h--hhcCCCCCCEEECcCCc-CCCcChhHhh-
Confidence 89999999999777541 1 125789999999984 66665 2 27888999999999997 5444333222
Q ss_pred CCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCC
Q 046577 524 QVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCD 569 (878)
Q Consensus 524 ~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~ 569 (878)
.+++|++|++++|+ ++..+. ...+++|++|++++|+
T Consensus 309 ------~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 309 ------GLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp ------TCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred ------ccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 48899999999964 665544 3458899999998864
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=9.2e-25 Score=236.50 Aligned_cols=147 Identities=21% Similarity=0.324 Sum_probs=90.3
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+++|++|+++++.... ++. |..+++|++|++++|.++.+|. +..+++|++|++++|.+.. ++ .+.++++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~---~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS---IQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCCC---CTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred hcccccEEEEeCCcccc---chh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 45666777776665543 443 5666777777777776666655 6666777777777776665 33 466667777
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCC
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLR 386 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (878)
+|++++|.+..+|. +.++++|++|++++|..+..++. +..+++|++|++++|.+. ....+..++
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~-------------~~~~~~~l~ 177 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK-------------DVTPIANLT 177 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC-------------CCGGGGGCT
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC-------------CchhhccCC
Confidence 77777766666655 66666677777766654444443 566666666666666543 112245555
Q ss_pred CCcEEEEEecC
Q 046577 387 WLTTLEIDVKN 397 (878)
Q Consensus 387 ~L~~L~l~~~~ 397 (878)
+|++|++++|.
T Consensus 178 ~L~~L~l~~n~ 188 (347)
T 4fmz_A 178 DLYSLSLNYNQ 188 (347)
T ss_dssp TCSEEECTTSC
T ss_pred CCCEEEccCCc
Confidence 55555555544
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=4.4e-25 Score=246.38 Aligned_cols=262 Identities=20% Similarity=0.141 Sum_probs=196.0
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+++|++|++++|.... +| . |..+++|++|++++|.++.+| ++.+++|++|++++|.+.+ ++ ++++++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~---~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD---MT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCSSCCCC---CT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCC
T ss_pred HcCCCCEEEccCCCccc---Ch-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCC
Confidence 46788999999887764 66 3 688999999999999988886 8888999999999999887 54 88899999
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCC
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLR 386 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (878)
+|++++|+++.+| ++++++|++|++++|. ++.++ ++++++|++|++++|... +.. .++.++
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~-----------~~~--~~~~l~ 170 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKI-----------TKL--DVTPQT 170 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCC-----------CCC--CCTTCT
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcc-----------ccc--ccccCC
Confidence 9999999888876 7889999999999987 77764 678899999999888543 111 467788
Q ss_pred CCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCC
Q 046577 387 WLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIP 466 (878)
Q Consensus 387 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 466 (878)
+|+.|++++|....++. ..+++|+.|++++|.++.+.
T Consensus 171 ~L~~L~ls~n~l~~l~l-------------------------------------~~l~~L~~L~l~~N~l~~~~------ 207 (457)
T 3bz5_A 171 QLTTLDCSFNKITELDV-------------------------------------SQNKLLNRLNCDTNNITKLD------ 207 (457)
T ss_dssp TCCEEECCSSCCCCCCC-------------------------------------TTCTTCCEEECCSSCCSCCC------
T ss_pred cCCEEECCCCccceecc-------------------------------------ccCCCCCEEECcCCcCCeec------
Confidence 88888888876554331 15788888999888776541
Q ss_pred CcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccc
Q 046577 467 AAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLR 546 (878)
Q Consensus 467 ~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 546 (878)
+..+++|+.|++++ +.++.+ | ++.+++|++|++++|. ++.++. ..+++|+.|+++.
T Consensus 208 ---l~~l~~L~~L~Ls~-N~l~~i-p---~~~l~~L~~L~l~~N~-l~~~~~----------~~l~~L~~L~l~~----- 263 (457)
T 3bz5_A 208 ---LNQNIQLTFLDCSS-NKLTEI-D---VTPLTQLTYFDCSVNP-LTELDV----------STLSKLTTLHCIQ----- 263 (457)
T ss_dssp ---CTTCTTCSEEECCS-SCCSCC-C---CTTCTTCSEEECCSSC-CSCCCC----------TTCTTCCEEECTT-----
T ss_pred ---cccCCCCCEEECcC-Cccccc-C---ccccCCCCEEEeeCCc-CCCcCH----------HHCCCCCEEeccC-----
Confidence 11578888999888 566664 4 5778888888888887 544321 1477777776654
Q ss_pred cccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCcccc
Q 046577 547 CLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMI 618 (878)
Q Consensus 547 ~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 618 (878)
.+|+.|++++|+.+..+|. ..+++|+.|++++|...+.
T Consensus 264 -----------n~L~~L~l~~n~~~~~~~~-----------------------~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 264 -----------TDLLEIDLTHNTQLIYFQA-----------------------EGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp -----------CCCSCCCCTTCTTCCEEEC-----------------------TTCTTCCCCCCTTCTTCCE
T ss_pred -----------CCCCEEECCCCccCCcccc-----------------------cccccCCEEECCCCcccce
Confidence 3566677777766655532 4567888888888875443
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=246.54 Aligned_cols=148 Identities=21% Similarity=0.315 Sum_probs=72.1
Q ss_pred EEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCc
Q 046577 211 AISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDES 289 (878)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~ 289 (878)
.+..+++.+..+|..+. +++++|++++|.... ++...|.++++|++|+|++|.+..+ |..|+++++|++|++++|
T Consensus 15 ~v~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIP-TETRLLDLGKNRIKT---LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCSSCCSCCC-TTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCcCCCCCC-CCCcEEECCCCccce---ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 34444444555554332 345555555555433 3333445555555555555555543 445555555555555555
Q ss_pred cccccchhhhcCCCCCCEEEcCCCCCccc-chhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcc
Q 046577 290 ILRDIDIAIIGKLENLEILSFVRSDTVQL-PKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSI 363 (878)
Q Consensus 290 ~~~~~~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 363 (878)
.+....+..|.++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCC
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcC
Confidence 55542223345555555555555555433 2334555555555555554 4444433345555555555554443
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=6.9e-25 Score=241.39 Aligned_cols=305 Identities=17% Similarity=0.180 Sum_probs=238.8
Q ss_pred ccccceEEEEeccccccCCCCC--CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCc
Q 046577 205 SLKKCYAISIRYCCIHELPNAL--ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKL 281 (878)
Q Consensus 205 ~~~~~~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L 281 (878)
...+++++++.++.+..+|... .+++|++|++++|.... ++...|..+++|++|++++|.+..+ |..++.+++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc---cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 3578999999999999999864 78999999999998765 7776789999999999999999977 5668999999
Q ss_pred cEEEecCccccccchhh-hcCCCCCCEEEcCCCCCcccch-hhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcc
Q 046577 282 KTLCLDESILRDIDIAI-IGKLENLEILSFVRSDTVQLPK-ALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMC 359 (878)
Q Consensus 282 ~~L~l~~~~~~~~~p~~-i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 359 (878)
++|++++|.+.. +|.. ++++++|++|++++|.+..++. .++++++|++|++++|. ++.++ ++.+++|++|+++
T Consensus 120 ~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 120 TVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVS 194 (390)
T ss_dssp CEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECC
T ss_pred CEEECCCCccCc-CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecc
Confidence 999999999998 6655 6999999999999999997754 59999999999999998 77775 5788999999999
Q ss_pred cCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccc
Q 046577 360 NCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNE 439 (878)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~ 439 (878)
+|.+. .+....+|++|++++|....++..
T Consensus 195 ~n~l~----------------~~~~~~~L~~L~l~~n~l~~~~~~----------------------------------- 223 (390)
T 3o6n_A 195 YNLLS----------------TLAIPIAVEELDASHNSINVVRGP----------------------------------- 223 (390)
T ss_dssp SSCCS----------------EEECCSSCSEEECCSSCCCEEECC-----------------------------------
T ss_pred ccccc----------------ccCCCCcceEEECCCCeeeecccc-----------------------------------
Confidence 88764 234556899999998876554432
Q ss_pred cccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhc
Q 046577 440 KVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISE 519 (878)
Q Consensus 440 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 519 (878)
.+++|+.|++++|.++.. + .+..+++|+.|++++ +.++...+ ..+..+++|++|++++|. ++.++..
T Consensus 224 --~~~~L~~L~l~~n~l~~~-----~---~l~~l~~L~~L~Ls~-n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~ 290 (390)
T 3o6n_A 224 --VNVELTILKLQHNNLTDT-----A---WLLNYPGLVEVDLSY-NELEKIMY-HPFVKMQRLERLYISNNR-LVALNLY 290 (390)
T ss_dssp --CCSSCCEEECCSSCCCCC-----G---GGGGCTTCSEEECCS-SCCCEEES-GGGTTCSSCCEEECCSSC-CCEEECS
T ss_pred --ccccccEEECCCCCCccc-----H---HHcCCCCccEEECCC-CcCCCcCh-hHccccccCCEEECCCCc-CcccCcc
Confidence 356788888888876643 1 122578888888888 45665533 446788888888888887 6555433
Q ss_pred ccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCcc
Q 046577 520 NRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLE 599 (878)
Q Consensus 520 ~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 599 (878)
.. .+|+|++|+++++ .++.++.. ...+++|++|++++|+ ++.++ .
T Consensus 291 ~~--------~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~-----------------------~ 335 (390)
T 3o6n_A 291 GQ--------PIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTLK-----------------------L 335 (390)
T ss_dssp SS--------CCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCCC-----------------------C
T ss_pred cC--------CCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCCc-cceeC-----------------------c
Confidence 22 4788889888885 56655433 2347889999998864 55442 1
Q ss_pred ccCCCcceEEeccCCcc
Q 046577 600 KILPNLTELSLSGKDAK 616 (878)
Q Consensus 600 ~~l~~L~~L~l~~~~~~ 616 (878)
..+++|+.|++++|+..
T Consensus 336 ~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 336 STHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CTTCCCSEEECCSSCEE
T ss_pred hhhccCCEEEcCCCCcc
Confidence 55788999999998854
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=2.7e-24 Score=243.60 Aligned_cols=155 Identities=22% Similarity=0.244 Sum_probs=93.7
Q ss_pred cccceEEEEeccccccCCCC-C-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCcc-ccccccCcc
Q 046577 206 LKKCYAISIRYCCIHELPNA-L-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPS-SIDLLVKLK 282 (878)
Q Consensus 206 ~~~~~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~ 282 (878)
+..++.|++++|.+..++.. + .+++|++|++++|.... ++...|.++++|++|+|++|.+..+|. .|+++++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA---VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE---eChhhhhCCccCCEEECCCCcCCccCcccccCCCCCC
Confidence 44566666666666655432 2 56666666666665543 433445666666666666666666643 356666666
Q ss_pred EEEecCccccccchhhhcCCCCCCEEEcCCCCCccc-chhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccC
Q 046577 283 TLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQL-PKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNC 361 (878)
Q Consensus 283 ~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 361 (878)
+|++++|.+....|..|.++++|++|++++|.+..+ |..++.+++|++|++++|. +..++...++++++|+.|++++|
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCC
Confidence 666666666665555666666666666666666544 3346666666666666665 55666555666666666666665
Q ss_pred cch
Q 046577 362 SIE 364 (878)
Q Consensus 362 ~~~ 364 (878)
.+.
T Consensus 187 ~i~ 189 (477)
T 2id5_A 187 NIN 189 (477)
T ss_dssp CCC
T ss_pred cCc
Confidence 543
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.1e-24 Score=253.27 Aligned_cols=307 Identities=15% Similarity=0.203 Sum_probs=224.3
Q ss_pred CCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEecCccccccchhhhcCCC
Q 046577 225 ALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLE 303 (878)
Q Consensus 225 ~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~ 303 (878)
.+.+++++.++++++.... +|..+|.++++|++|+|++|.+..+| ..|+.+++|++|++++|.+.+..|..|++++
T Consensus 47 ~l~l~~l~~l~l~~~~l~~---lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 47 DITLNNQKIVTFKNSTMRK---LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp SGGGCCCSEEEESSCEESE---ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccCCCceEEEeeCCCCCC---cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 3467899999999987755 89999999999999999999999774 5899999999999999999996677789999
Q ss_pred CCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhh
Q 046577 304 NLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDEL 382 (878)
Q Consensus 304 ~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 382 (878)
+|++|++++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+. .. .+
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~---~~ 188 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------HV---DL 188 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS-----------BC---CG
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC-----------Cc---Ch
Confidence 999999999999999887 5899999999999998 88887766899999999999999876 11 35
Q ss_pred cCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeeccc
Q 046577 383 MHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHY 462 (878)
Q Consensus 383 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~ 462 (878)
+.+++|+.|++++|....++ ..++|+.|++++|.++.+...
T Consensus 189 ~~l~~L~~L~l~~n~l~~l~---------------------------------------~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTLA---------------------------------------IPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp GGCTTCSEEECCSSCCSEEE---------------------------------------CCTTCSEEECCSSCCCEEECS
T ss_pred hhhhhhhhhhcccCcccccc---------------------------------------CCchhheeeccCCcccccccc
Confidence 66788999998877543221 356788889988877654221
Q ss_pred CCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccc
Q 046577 463 NQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDL 542 (878)
Q Consensus 463 ~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 542 (878)
..++|+.|++++ +.++.. ..++.+++|++|++++|. +..++....+ .+++|++|++++
T Consensus 230 ---------~~~~L~~L~L~~-n~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~-------~l~~L~~L~Ls~- 287 (597)
T 3oja_B 230 ---------VNVELTILKLQH-NNLTDT---AWLLNYPGLVEVDLSYNE-LEKIMYHPFV-------KMQRLERLYISN- 287 (597)
T ss_dssp ---------CCSCCCEEECCS-SCCCCC---GGGGGCTTCSEEECCSSC-CCEEESGGGT-------TCSSCCEEECTT-
T ss_pred ---------cCCCCCEEECCC-CCCCCC---hhhccCCCCCEEECCCCc-cCCCCHHHhc-------CccCCCEEECCC-
Confidence 246789999988 455553 237888899999998887 5444322222 377888888877
Q ss_pred cccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCcccccccc
Q 046577 543 PKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKMILQAD 622 (878)
Q Consensus 543 ~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 622 (878)
+.++.++.. ...+|+|+.|++++| .+..+|.. ...+++|+.|++++|.+...
T Consensus 288 N~l~~l~~~--~~~l~~L~~L~Ls~N-~l~~i~~~---------------------~~~l~~L~~L~L~~N~l~~~---- 339 (597)
T 3oja_B 288 NRLVALNLY--GQPIPTLKVLDLSHN-HLLHVERN---------------------QPQFDRLENLYLDHNSIVTL---- 339 (597)
T ss_dssp SCCCEEECS--SSCCTTCCEEECCSS-CCCCCGGG---------------------HHHHTTCSEEECCSSCCCCC----
T ss_pred CCCCCCCcc--cccCCCCcEEECCCC-CCCccCcc---------------------cccCCCCCEEECCCCCCCCc----
Confidence 455555432 234677777777775 34444321 13456666666666664322
Q ss_pred CccccccCCcEEEEecC
Q 046577 623 FPQHLFGSLKRLVIAED 639 (878)
Q Consensus 623 ~~~~~~~~L~~L~l~~~ 639 (878)
+...+++|+.|++++|
T Consensus 340 -~~~~~~~L~~L~l~~N 355 (597)
T 3oja_B 340 -KLSTHHTLKNLTLSHN 355 (597)
T ss_dssp -CCCTTCCCSEEECCSS
T ss_pred -ChhhcCCCCEEEeeCC
Confidence 1223445555555333
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=5e-24 Score=247.56 Aligned_cols=305 Identities=18% Similarity=0.191 Sum_probs=233.4
Q ss_pred ccccceEEEEeccccccCCCCC--CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCc
Q 046577 205 SLKKCYAISIRYCCIHELPNAL--ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKL 281 (878)
Q Consensus 205 ~~~~~~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L 281 (878)
.+.+++.+++.++.+..+|... .+++|++|++++|.... ++...|..+++|++|+|++|.+..+| ..|+++++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE---IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC---CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 3567899999999999999864 78999999999998765 77767899999999999999999775 567999999
Q ss_pred cEEEecCccccccchh-hhcCCCCCCEEEcCCCCCcccch-hhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcc
Q 046577 282 KTLCLDESILRDIDIA-IIGKLENLEILSFVRSDTVQLPK-ALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMC 359 (878)
Q Consensus 282 ~~L~l~~~~~~~~~p~-~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 359 (878)
++|++++|.+.. +|. .|+++++|++|++++|.+..++. .++++++|++|++++|. +..++ ++.+++|+.|+++
T Consensus 126 ~~L~L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~ 200 (597)
T 3oja_B 126 TVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVS 200 (597)
T ss_dssp CEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECC
T ss_pred CEEEeeCCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcc
Confidence 999999999998 555 46999999999999999997755 59999999999999998 77775 5678999999999
Q ss_pred cCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccc
Q 046577 360 NCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNE 439 (878)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~ 439 (878)
+|.+. .+....+|+.|++++|.+..++..
T Consensus 201 ~n~l~----------------~l~~~~~L~~L~ls~n~l~~~~~~----------------------------------- 229 (597)
T 3oja_B 201 YNLLS----------------TLAIPIAVEELDASHNSINVVRGP----------------------------------- 229 (597)
T ss_dssp SSCCS----------------EEECCTTCSEEECCSSCCCEEECS-----------------------------------
T ss_pred cCccc----------------cccCCchhheeeccCCcccccccc-----------------------------------
Confidence 88764 345567899999998876554433
Q ss_pred cccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhc
Q 046577 440 KVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISE 519 (878)
Q Consensus 440 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~ 519 (878)
..++|+.|++++|.++.. .+ +..+++|+.|+|++ +.++...| ..++.+++|++|++++|. +..++..
T Consensus 230 --~~~~L~~L~L~~n~l~~~-------~~-l~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~ 296 (597)
T 3oja_B 230 --VNVELTILKLQHNNLTDT-------AW-LLNYPGLVEVDLSY-NELEKIMY-HPFVKMQRLERLYISNNR-LVALNLY 296 (597)
T ss_dssp --CCSCCCEEECCSSCCCCC-------GG-GGGCTTCSEEECCS-SCCCEEES-GGGTTCSSCCEEECTTSC-CCEEECS
T ss_pred --cCCCCCEEECCCCCCCCC-------hh-hccCCCCCEEECCC-CccCCCCH-HHhcCccCCCEEECCCCC-CCCCCcc
Confidence 245788888888766532 11 22577888888887 45555533 346778888888888876 5554432
Q ss_pred ccCCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCcc
Q 046577 520 NRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLE 599 (878)
Q Consensus 520 ~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 599 (878)
.. .+|+|++|+++++ .++.++.. ...+++|+.|++++|+ +..+| .
T Consensus 297 ~~--------~l~~L~~L~Ls~N-~l~~i~~~--~~~l~~L~~L~L~~N~-l~~~~-----------------------~ 341 (597)
T 3oja_B 297 GQ--------PIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTLK-----------------------L 341 (597)
T ss_dssp SS--------CCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCCC-----------------------C
T ss_pred cc--------cCCCCcEEECCCC-CCCccCcc--cccCCCCCEEECCCCC-CCCcC-----------------------h
Confidence 22 3788888888874 45555432 2447888888888863 44432 1
Q ss_pred ccCCCcceEEeccCCcc
Q 046577 600 KILPNLTELSLSGKDAK 616 (878)
Q Consensus 600 ~~l~~L~~L~l~~~~~~ 616 (878)
..+++|+.|++++|+..
T Consensus 342 ~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 342 STHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CTTCCCSEEECCSSCEE
T ss_pred hhcCCCCEEEeeCCCCC
Confidence 55778888888888743
No 41
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.91 E-value=2e-25 Score=254.92 Aligned_cols=171 Identities=11% Similarity=0.086 Sum_probs=133.9
Q ss_pred CCccEEccCCChHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCCchhHHHHHHHhcCCCCCCc
Q 046577 3 SEDNFLINNLNEEEAGRLFKMMAGDDVENRELKSTAIDVARACGGLPIALTTVAKALRGKSLHEWKNSLRELRTPSMVNF 82 (878)
Q Consensus 3 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k~~~~W~~~l~~l~~~~~~~~ 82 (878)
+..+|+|++|+++|||+||+++|+....++++++++++|+++|+|+||||+++|+.|+.+ +|+.+ +.+.+. .+..
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~---~w~~~-~~l~~~-l~~~ 358 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK---TFEKM-AQLNNK-LESR 358 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS---SHHHH-HHHHHH-HHHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc---hHHHH-HHhHHH-hhcc
Confidence 346899999999999999999996433357889999999999999999999999999876 34433 333221 1211
Q ss_pred CCchhhHHHHHHHHHhcCCCchhHHHHH-----------HhccCCCCCChhHHHHHHhhc--ccccC---cchHHHHHHH
Q 046577 83 EGVSAETYSSIELSFKYLKGGQLKELFQ-----------LCSLMGNSIPTLKLLKYSIGL--GIFQG---VNKMEDARNK 146 (878)
Q Consensus 83 ~~~~~~i~~~L~lSy~~L~~~~lk~cFl-----------y~~~fp~~i~~~~li~~w~~~--g~~~~---~~~~e~~~~~ 146 (878)
...++.++|++||++||.+ +|.||+ |||+||+++... ++.|+|+ ||+.. +.+.+++++
T Consensus 359 --~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~- 432 (549)
T 2a5y_B 359 --GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD- 432 (549)
T ss_dssp --CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-
T ss_pred --cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-
Confidence 1234888999999999997 999999 999999987766 8999999 99964 345777776
Q ss_pred HHHHHHHHHhcccccccC--CCCcEEccHHHHHHHHHHhhccc
Q 046577 147 LYALVHELRDSCLLLEGD--SNKLISMHDVVRDVARSIACRDQ 187 (878)
Q Consensus 147 ~~~~l~~L~~r~l~~~~~--~~~~~~mHdl~~~l~~~~~~~e~ 187 (878)
+ |++|++|||++..+ ...+|+|||+||++|+.++.+++
T Consensus 433 ~---l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 433 R---LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp H---HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred H---HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 3 99999999998654 34579999999999999887654
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=4e-23 Score=221.78 Aligned_cols=266 Identities=17% Similarity=0.203 Sum_probs=181.1
Q ss_pred CccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccchhhhcCCCCCCEE
Q 046577 230 QLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEIL 308 (878)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 308 (878)
++++++++++.... +|..+ .++|++|++++|.+..+ |..++++++|++|++++|.+.+..|..|+++++|++|
T Consensus 34 ~l~~l~~~~~~l~~---ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA---VPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSS---CCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCccc---cCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 68889998887654 78764 46899999999999877 5578999999999999999998668899999999999
Q ss_pred EcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCC
Q 046577 309 SFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWL 388 (878)
Q Consensus 309 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (878)
++++|.++.+|..+. ++|++|++++|. +..++...++++++|++|++++|.+... +..+..+..+ +|
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l-~L 174 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENS---------GFEPGAFDGL-KL 174 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGG---------GSCTTSSCSC-CC
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccC---------CCCcccccCC-cc
Confidence 999999999988765 799999999998 8888887789999999999999877410 1234556666 88
Q ss_pred cEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCc
Q 046577 389 TTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAA 468 (878)
Q Consensus 389 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 468 (878)
+.|++++|....+|... .++|++|++++|.++.+....
T Consensus 175 ~~L~l~~n~l~~l~~~~-------------------------------------~~~L~~L~l~~n~i~~~~~~~----- 212 (332)
T 2ft3_A 175 NYLRISEAKLTGIPKDL-------------------------------------PETLNELHLDHNKIQAIELED----- 212 (332)
T ss_dssp SCCBCCSSBCSSCCSSS-------------------------------------CSSCSCCBCCSSCCCCCCTTS-----
T ss_pred CEEECcCCCCCccCccc-------------------------------------cCCCCEEECCCCcCCccCHHH-----
Confidence 88888888877666543 245555555555444321111
Q ss_pred ccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccc
Q 046577 469 VFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCL 548 (878)
Q Consensus 469 ~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~ 548 (878)
+..+++|+.|++++ +.++.+.+ ..++.+++|++|++++|. ++.++.... .+++|++|++++ +.++.+
T Consensus 213 -l~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~~l~--------~l~~L~~L~l~~-N~l~~~ 279 (332)
T 2ft3_A 213 -LLRYSKLYRLGLGH-NQIRMIEN-GSLSFLPTLRELHLDNNK-LSRVPAGLP--------DLKLLQVVYLHT-NNITKV 279 (332)
T ss_dssp -STTCTTCSCCBCCS-SCCCCCCT-TGGGGCTTCCEEECCSSC-CCBCCTTGG--------GCTTCCEEECCS-SCCCBC
T ss_pred -hcCCCCCCEEECCC-CcCCcCCh-hHhhCCCCCCEEECCCCc-CeecChhhh--------cCccCCEEECCC-CCCCcc
Confidence 11355566666655 34444322 234555666666666655 444433222 255666666665 344444
Q ss_pred cCCCCcC-----CCCCccEEEEccCC
Q 046577 549 YPGMHTP-----EWLALEMLFVYRCD 569 (878)
Q Consensus 549 ~~~~~~~-----~~~~L~~L~l~~C~ 569 (878)
+...... .+++|+.|++.+++
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred ChhHccccccccccccccceEeecCc
Confidence 3322211 14667777777765
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=2.9e-22 Score=214.90 Aligned_cols=267 Identities=14% Similarity=0.197 Sum_probs=183.7
Q ss_pred CccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCcc-ccccccCccEEEecCccccccchhhhcCCCCCCEE
Q 046577 230 QLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPS-SIDLLVKLKTLCLDESILRDIDIAIIGKLENLEIL 308 (878)
Q Consensus 230 ~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 308 (878)
++++++++++.... +|..+ .+.|++|++++|.++.++. .++++++|++|++++|.+.+..|..++++++|++|
T Consensus 32 ~l~~l~~~~~~l~~---lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEK---VPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCS---CCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccc---cCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 67777777776554 67643 3678888888888887754 68888888888888888888568888888888888
Q ss_pred EcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCC
Q 046577 309 SFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWL 388 (878)
Q Consensus 309 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (878)
++++|.++.+|..+. ++|++|++++|. +..++...++++++|++|++++|.+.. .+.....+..+++|
T Consensus 106 ~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~L 173 (330)
T 1xku_A 106 YLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKL 173 (330)
T ss_dssp ECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTC
T ss_pred ECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCCc
Confidence 888888888887655 788888888887 777877768888888888888887641 11245667788888
Q ss_pred cEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCc
Q 046577 389 TTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAA 468 (878)
Q Consensus 389 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 468 (878)
++|++++|....+|... .++|++|++++|.++.+....+
T Consensus 174 ~~L~l~~n~l~~l~~~~-------------------------------------~~~L~~L~l~~n~l~~~~~~~~---- 212 (330)
T 1xku_A 174 SYIRIADTNITTIPQGL-------------------------------------PPSLTELHLDGNKITKVDAASL---- 212 (330)
T ss_dssp CEEECCSSCCCSCCSSC-------------------------------------CTTCSEEECTTSCCCEECTGGG----
T ss_pred CEEECCCCccccCCccc-------------------------------------cccCCEEECCCCcCCccCHHHh----
Confidence 88888888776655432 3567777777776654422211
Q ss_pred ccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccc
Q 046577 469 VFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCL 548 (878)
Q Consensus 469 ~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~ 548 (878)
..+++|+.|++++ +.++.+.+ ..+..+++|++|++++|. ++.++.... .+++|++|++++ +.++.+
T Consensus 213 --~~l~~L~~L~Ls~-n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~~l~--------~l~~L~~L~l~~-N~i~~~ 278 (330)
T 1xku_A 213 --KGLNNLAKLGLSF-NSISAVDN-GSLANTPHLRELHLNNNK-LVKVPGGLA--------DHKYIQVVYLHN-NNISAI 278 (330)
T ss_dssp --TTCTTCCEEECCS-SCCCEECT-TTGGGSTTCCEEECCSSC-CSSCCTTTT--------TCSSCCEEECCS-SCCCCC
T ss_pred --cCCCCCCEEECCC-CcCceeCh-hhccCCCCCCEEECCCCc-CccCChhhc--------cCCCcCEEECCC-CcCCcc
Confidence 2466777777776 44555422 335667777777777776 554443322 367777777776 345555
Q ss_pred cCCCCc-----CCCCCccEEEEccCC
Q 046577 549 YPGMHT-----PEWLALEMLFVYRCD 569 (878)
Q Consensus 549 ~~~~~~-----~~~~~L~~L~l~~C~ 569 (878)
+..... ...++|+.|++.+.+
T Consensus 279 ~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 279 GSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ChhhcCCcccccccccccceEeecCc
Confidence 433221 124677788887754
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=9.8e-24 Score=246.30 Aligned_cols=156 Identities=18% Similarity=0.138 Sum_probs=93.0
Q ss_pred CCCCccEEEcCCCCCccc-cCcC-----------hhhhhCCCCCcEEEeeCCCCCC-Cccccccc--cCccEEEecCccc
Q 046577 227 ECPQLEFLCMSPEDSSLE-VSIP-----------ENFFVGMRKLKVVDFTGMQLFS-LPSSIDLL--VKLKTLCLDESIL 291 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~-~~l~-----------~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~l--~~L~~L~l~~~~~ 291 (878)
.+++|+.|+++++..... +.+| ..++..+++|++|+|+++.+.. .+..+... .+|++|++++|..
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 567788888866532110 0011 1223367788888888876652 24444443 3488888887752
Q ss_pred -cc-cchhhhcCCCCCCEEEcCCCCCcc-----cchhhcCCCCccEEecCCCCCCCccCc----chhcCCccccEEEccc
Q 046577 292 -RD-IDIAIIGKLENLEILSFVRSDTVQ-----LPKALGQLTKLRLLDLTDCFHLKVIAP----NVISSLIRLEELYMCN 360 (878)
Q Consensus 292 -~~-~~p~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~~~----~~~~~l~~L~~L~l~~ 360 (878)
.. .++..+..+++|++|++++|.+.. ++.....+++|++|++++|. +..+.. ..+.++++|++|++++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccC
Confidence 11 133344577888888888876542 33345567788888887776 442221 1245677788888777
Q ss_pred CcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEe
Q 046577 361 CSIEWEVERANSKRSNASLDELMHLRWLTTLEIDV 395 (878)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 395 (878)
|.+. ..+..+..+++|++|+++.
T Consensus 230 ~~~~------------~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 230 FEIL------------ELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CBGG------------GGHHHHHHCTTCCEEEECB
T ss_pred ccHH------------HHHHHHhhhhHHHhhcccc
Confidence 7654 1345566677777777764
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=3.8e-23 Score=241.35 Aligned_cols=286 Identities=14% Similarity=0.051 Sum_probs=183.5
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhC-CCC-CcEEEeeCCC-CC--CCccccccccCccEEEecCcccccc----chh
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVG-MRK-LKVVDFTGMQ-LF--SLPSSIDLLVKLKTLCLDESILRDI----DIA 297 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~-l~~-Lr~L~L~~~~-i~--~lp~~~~~l~~L~~L~l~~~~~~~~----~p~ 297 (878)
.+++|++|+++++..... .+.. +.. ++. |++|++++|. +. .++.....+++|++|++++|.+.+. ++.
T Consensus 110 ~~~~L~~L~L~~~~i~~~--~~~~-l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDL--DLDR-LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HCTTCCEEEEESCBCCHH--HHHH-HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred hCCCCCeEEeeccEecHH--HHHH-HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 578999999998864432 2222 233 344 9999999986 22 3444556889999999999987664 444
Q ss_pred hhcCCCCCCEEEcCCCCCc-----ccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcc
Q 046577 298 IIGKLENLEILSFVRSDTV-----QLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANS 372 (878)
Q Consensus 298 ~i~~L~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 372 (878)
.+..+++|++|++++|.++ .++..+.++++|++|++++|. +..++.. +.++++|++|+++.....
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~-------- 256 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGSLNED-------- 256 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECBCCCC--------
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccccccc--------
Confidence 5678899999999999875 455557789999999999987 7778755 899999999999753322
Q ss_pred cCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeec
Q 046577 373 KRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEIS 452 (878)
Q Consensus 373 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~ 452 (878)
.........+..+++|+.|+++......++..+ . .+++|++|+++
T Consensus 257 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~--------------------------------~---~~~~L~~L~Ls 301 (592)
T 3ogk_B 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILF--------------------------------P---FAAQIRKLDLL 301 (592)
T ss_dssp TTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGG--------------------------------G---GGGGCCEEEET
T ss_pred cchHHHHHHhhccccccccCccccchhHHHHHH--------------------------------h---hcCCCcEEecC
Confidence 011233456777888999888654333322211 1 46788888888
Q ss_pred cccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeC----------CchhHHHhhcccC
Q 046577 453 EINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRD----------CKDLQEIISENRA 522 (878)
Q Consensus 453 ~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~----------~~~l~~~~~~~~~ 522 (878)
+|.++..... .+...+++|+.|+++++ +.+.........+++|++|++++ |..++........
T Consensus 302 ~~~l~~~~~~-----~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 302 YALLETEDHC-----TLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp TCCCCHHHHH-----HHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred CCcCCHHHHH-----HHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 7764321110 01125778888888742 22222234456678888888884 5545433211100
Q ss_pred CCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEcc---CCCccch
Q 046577 523 DQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYR---CDKLKIF 574 (878)
Q Consensus 523 ~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~---C~~L~~l 574 (878)
..+|+|++|++ .|++++..........+++|++|++.. |+.++..
T Consensus 375 ------~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 375 ------QGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp ------HHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred ------hhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 03678888877 445555432222222367788888873 5556553
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=9.7e-21 Score=203.03 Aligned_cols=265 Identities=15% Similarity=0.182 Sum_probs=158.5
Q ss_pred cccceEEEEeccccccCCCC-C-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccE
Q 046577 206 LKKCYAISIRYCCIHELPNA-L-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKT 283 (878)
Q Consensus 206 ~~~~~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~ 283 (878)
.+.++.|++++|.+..++.. + .+++|++|++++|.... ++...|.++++|++|++++|.++.+|..+. ++|++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~ 125 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK---ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQE 125 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC---BCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe---eCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccE
Confidence 34566667766666666542 2 56667777776666544 433345666677777777776666665543 56777
Q ss_pred EEecCccccccchhhhcCCCCCCEEEcCCCCCc---ccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEccc
Q 046577 284 LCLDESILRDIDIAIIGKLENLEILSFVRSDTV---QLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCN 360 (878)
Q Consensus 284 L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~ 360 (878)
|++++|.+.+..+..+.++++|++|++++|.+. ..+..+.++++|++|++++|. +..+|.. +. ++|++|++++
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~-~~--~~L~~L~l~~ 201 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG-LP--PSLTELHLDG 201 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS-CC--TTCSEEECTT
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc-cc--ccCCEEECCC
Confidence 777776666644555666777777777666654 234456666677777776666 6666654 22 5666777666
Q ss_pred CcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCccccccccccccccccccccc
Q 046577 361 CSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEK 440 (878)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~ 440 (878)
|.+. ...+..+..+++|++|++++|.....+.. .+.
T Consensus 202 n~l~-----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------------------~~~-- 237 (330)
T 1xku_A 202 NKIT-----------KVDAASLKGLNNLAKLGLSFNSISAVDNG-------------------------------SLA-- 237 (330)
T ss_dssp SCCC-----------EECTGGGTTCTTCCEEECCSSCCCEECTT-------------------------------TGG--
T ss_pred CcCC-----------ccCHHHhcCCCCCCEEECCCCcCceeChh-------------------------------hcc--
Confidence 6554 22344566666677777666654433321 111
Q ss_pred ccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhc------ccCCcCEEEEeCCchhH
Q 046577 441 VALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIG------SLKQLQHLDIRDCKDLQ 514 (878)
Q Consensus 441 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~------~l~~L~~L~l~~~~~l~ 514 (878)
.+++|++|++++|.++.+ | .++ ..+++|+.|++++ +.++.+.+. .+. ..+.|+.|++.+++ +.
T Consensus 238 -~l~~L~~L~L~~N~l~~l-----p-~~l-~~l~~L~~L~l~~-N~i~~~~~~-~f~~~~~~~~~~~l~~l~l~~N~-~~ 306 (330)
T 1xku_A 238 -NTPHLRELHLNNNKLVKV-----P-GGL-ADHKYIQVVYLHN-NNISAIGSN-DFCPPGYNTKKASYSGVSLFSNP-VQ 306 (330)
T ss_dssp -GSTTCCEEECCSSCCSSC-----C-TTT-TTCSSCCEEECCS-SCCCCCCTT-SSSCSSCCTTSCCCSEEECCSSS-SC
T ss_pred -CCCCCCEEECCCCcCccC-----C-hhh-ccCCCcCEEECCC-CcCCccChh-hcCCcccccccccccceEeecCc-cc
Confidence 577888888888876633 2 221 2577888888887 556665332 222 24778888888887 43
Q ss_pred HHh--hcccCCCCCCcccCcccceecccc
Q 046577 515 EII--SENRADQVIPYFVFPQLTTLRLQD 541 (878)
Q Consensus 515 ~~~--~~~~~~~~~~~~~~p~L~~L~l~~ 541 (878)
.+. ...+. .+++++.+++++
T Consensus 307 ~~~i~~~~f~-------~~~~l~~l~L~~ 328 (330)
T 1xku_A 307 YWEIQPSTFR-------CVYVRAAVQLGN 328 (330)
T ss_dssp GGGSCGGGGT-------TCCCGGGEEC--
T ss_pred ccccCccccc-------cccceeEEEecc
Confidence 321 11111 366777777765
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=6.7e-22 Score=209.70 Aligned_cols=253 Identities=14% Similarity=0.147 Sum_probs=168.6
Q ss_pred CCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeC-CCCC-CCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 229 PQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTG-MQLF-SLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+++.|+++++.......+|.. |.++++|++|++++ |.+. .+|..++++++|++|++++|.+.+.+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 4566666666665430016654 47777788888774 6666 5677777777788888877777765777777777888
Q ss_pred EEEcCCCCCc-ccchhhcCCCCccEEecCCCCCCC-ccCcchhcCCc-cccEEEcccCcchhHHhhhcccCCCCChhhhc
Q 046577 307 ILSFVRSDTV-QLPKALGQLTKLRLLDLTDCFHLK-VIAPNVISSLI-RLEELYMCNCSIEWEVERANSKRSNASLDELM 383 (878)
Q Consensus 307 ~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~-~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 383 (878)
+|++++|.+. .+|..++++++|++|++++|. +. .+|.. +++++ +|++|++++|.+. +..+..+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~-----------~~~~~~~~ 195 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLT-----------GKIPPTFA 195 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEE-----------EECCGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeee-----------ccCChHHh
Confidence 8888777776 667777777788888887777 54 55655 67776 7788887777665 23455566
Q ss_pred CCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccC
Q 046577 384 HLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYN 463 (878)
Q Consensus 384 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~ 463 (878)
.++ |+.|++++|.....+.. .+. .+++|+.|++++|.++...
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~-------------------------------~~~---~l~~L~~L~L~~N~l~~~~--- 237 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASV-------------------------------LFG---SDKNTQKIHLAKNSLAFDL--- 237 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGG-------------------------------GCC---TTSCCSEEECCSSEECCBG---
T ss_pred CCc-ccEEECcCCcccCcCCH-------------------------------HHh---cCCCCCEEECCCCceeeec---
Confidence 665 77777777654322211 111 5777888888887665321
Q ss_pred CCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceecccccc
Q 046577 464 QIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLP 543 (878)
Q Consensus 464 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 543 (878)
+. +..+++|++|++++ +.++...| ..+..+++|++|++++|..-..++.. . .+++|+.|++.+.+
T Consensus 238 --~~--~~~l~~L~~L~Ls~-N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~--~-------~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 238 --GK--VGLSKNLNGLDLRN-NRIYGTLP-QGLTQLKFLHSLNVSFNNLCGEIPQG--G-------NLQRFDVSAYANNK 302 (313)
T ss_dssp --GG--CCCCTTCCEEECCS-SCCEECCC-GGGGGCTTCCEEECCSSEEEEECCCS--T-------TGGGSCGGGTCSSS
T ss_pred --Cc--ccccCCCCEEECcC-CcccCcCC-hHHhcCcCCCEEECcCCcccccCCCC--c-------cccccChHHhcCCC
Confidence 11 12468888888888 45554334 34788899999999988732233332 2 48899999999877
Q ss_pred ccccc
Q 046577 544 KLRCL 548 (878)
Q Consensus 544 ~L~~~ 548 (878)
.+...
T Consensus 303 ~lc~~ 307 (313)
T 1ogq_A 303 CLCGS 307 (313)
T ss_dssp EEEST
T ss_pred CccCC
Confidence 66543
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.7e-21 Score=207.81 Aligned_cols=207 Identities=25% Similarity=0.365 Sum_probs=112.4
Q ss_pred CCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecC
Q 046577 255 MRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLT 334 (878)
Q Consensus 255 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~ 334 (878)
..++++|+++++.+..+|..++++++|++|++++|.+.. +|..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC-CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc-hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 355666666666666666656666666666666666653 5666666666666666666666666666666666666666
Q ss_pred CCCCCCccCcchhc---------CCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchh
Q 046577 335 DCFHLKVIAPNVIS---------SLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGF 405 (878)
Q Consensus 335 ~~~~l~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 405 (878)
+|..+..+|.. ++ ++++|++|++++|.+. ..+..++.+++|++|++++|....+|..+
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l 225 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNLKSLKIRNSPLSALGPAI 225 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC------------cchHhhcCCCCCCEEEccCCCCCcCchhh
Confidence 65545555544 32 2555666665555443 23344555556666666555544333221
Q ss_pred hhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeecccc
Q 046577 406 LARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCH 485 (878)
Q Consensus 406 ~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 485 (878)
..+++|++|++++|++... + |.+ +..+++|+.|++++|+
T Consensus 226 -----------------------------------~~l~~L~~L~Ls~n~~~~~----~-p~~-~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 226 -----------------------------------HHLPKLEELDLRGCTALRN----Y-PPI-FGGRAPLKRLILKDCS 264 (328)
T ss_dssp -----------------------------------GGCTTCCEEECTTCTTCCB----C-CCC-TTCCCCCCEEECTTCT
T ss_pred -----------------------------------ccCCCCCEEECcCCcchhh----h-HHH-hcCCCCCCEEECCCCC
Confidence 1355566666666533221 1 111 1135666666666655
Q ss_pred ccccccchhhhcccCCcCEEEEeCCchhHHHhh
Q 046577 486 KLKYIFSASMIGSLKQLQHLDIRDCKDLQEIIS 518 (878)
Q Consensus 486 ~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~ 518 (878)
....+ | ..++.+++|++|+|++|..++.+|.
T Consensus 265 ~~~~~-p-~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 265 NLLTL-P-LDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp TCCBC-C-TTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred chhhc-c-hhhhcCCCCCEEeCCCCCchhhccH
Confidence 54443 2 2255666666666666665544444
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=6.9e-22 Score=214.08 Aligned_cols=271 Identities=16% Similarity=0.208 Sum_probs=188.8
Q ss_pred EEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCc
Q 046577 211 AISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDES 289 (878)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~ 289 (878)
..+.+++.++.+|..+. ++|++|++++|.... ++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITY---ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCE---ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcc---cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 35666777888887653 589999999998765 7776789999999999999999876 567899999999999999
Q ss_pred cccccchhhhcCCCCCCEEEcCCCCCcccch--hhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHH
Q 046577 290 ILRDIDIAIIGKLENLEILSFVRSDTVQLPK--ALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEV 367 (878)
Q Consensus 290 ~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 367 (878)
.+.+..+..++++++|++|++++|.++.+|. .++++++|++|++++|..+..++...++++++|++|++++|.+.
T Consensus 111 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--- 187 (353)
T 2z80_A 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ--- 187 (353)
T ss_dssp CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC---
T ss_pred cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC---
Confidence 9988444458999999999999999998887 68899999999999986578887666889999999999988775
Q ss_pred hhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcc
Q 046577 368 ERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLE 447 (878)
Q Consensus 368 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~ 447 (878)
...+..++.+++|++|++++|....++.... . .+++|+
T Consensus 188 --------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-------------------------------~---~~~~L~ 225 (353)
T 2z80_A 188 --------SYEPKSLKSIQNVSHLILHMKQHILLLEIFV-------------------------------D---VTSSVE 225 (353)
T ss_dssp --------EECTTTTTTCSEEEEEEEECSCSTTHHHHHH-------------------------------H---HTTTEE
T ss_pred --------ccCHHHHhccccCCeecCCCCccccchhhhh-------------------------------h---hccccc
Confidence 3345678888999999999887655554320 0 245666
Q ss_pred eeeeccccceeecccCCCCCcccccccCccEEeecccccccccc---chhhhcccCCcCEEEEeCCchhHHHhhcccCCC
Q 046577 448 ALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIF---SASMIGSLKQLQHLDIRDCKDLQEIISENRADQ 524 (878)
Q Consensus 448 ~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~---~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 524 (878)
.|++++|.++.+....++.. ...+.++.++++++ .+.+.. -+..+..+++|++|++++|. ++.++.....
T Consensus 226 ~L~L~~n~l~~~~~~~l~~~---~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~-- 298 (353)
T 2z80_A 226 CLELRDTDLDTFHFSELSTG---ETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFD-- 298 (353)
T ss_dssp EEEEESCBCTTCCCC---------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTT--
T ss_pred EEECCCCccccccccccccc---cccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHh--
Confidence 66666665443221111111 02344555555542 222210 01235566677777777665 5544443222
Q ss_pred CCCcccCcccceeccccc
Q 046577 525 VIPYFVFPQLTTLRLQDL 542 (878)
Q Consensus 525 ~~~~~~~p~L~~L~l~~c 542 (878)
.+++|++|+++++
T Consensus 299 -----~l~~L~~L~L~~N 311 (353)
T 2z80_A 299 -----RLTSLQKIWLHTN 311 (353)
T ss_dssp -----TCTTCCEEECCSS
T ss_pred -----cCCCCCEEEeeCC
Confidence 3667777777664
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.7e-21 Score=206.67 Aligned_cols=246 Identities=16% Similarity=0.192 Sum_probs=195.0
Q ss_pred ccceEEEEeccccc---cCCCCC-CCCCccEEEcCC-CCCccccCcChhhhhCCCCCcEEEeeCCCCC-CCccccccccC
Q 046577 207 KKCYAISIRYCCIH---ELPNAL-ECPQLEFLCMSP-EDSSLEVSIPENFFVGMRKLKVVDFTGMQLF-SLPSSIDLLVK 280 (878)
Q Consensus 207 ~~~~~L~l~~~~~~---~l~~~~-~~~~Lr~L~l~~-~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~ 280 (878)
.++++|+++++.+. .+|..+ .+++|++|++++ |..... +|.. |.++++|++|++++|.+. .+|..++++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~--~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP--IPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC--CCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc--CChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 57889999998887 466665 789999999985 766543 7766 589999999999999998 78889999999
Q ss_pred ccEEEecCccccccchhhhcCCCCCCEEEcCCCCCc-ccchhhcCCC-CccEEecCCCCCCC-ccCcchhcCCccccEEE
Q 046577 281 LKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTV-QLPKALGQLT-KLRLLDLTDCFHLK-VIAPNVISSLIRLEELY 357 (878)
Q Consensus 281 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l~-~~~~~~~~~l~~L~~L~ 357 (878)
|++|++++|.+.+.+|..++.+++|++|++++|.++ .+|..+++++ +|++|++++|. +. .+|.. ++.++ |++|+
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~-~~~l~-L~~L~ 203 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT-FANLN-LAFVD 203 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG-GGGCC-CSEEE
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH-HhCCc-ccEEE
Confidence 999999999998778999999999999999999988 8898999998 99999999998 55 55554 78887 99999
Q ss_pred cccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccc
Q 046577 358 MCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLF 437 (878)
Q Consensus 358 l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l 437 (878)
+++|.+. +..+..+..+++|+.|++++|.....+.. +
T Consensus 204 Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------------~ 240 (313)
T 1ogq_A 204 LSRNMLE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLGK--------------------------------V 240 (313)
T ss_dssp CCSSEEE-----------ECCGGGCCTTSCCSEEECCSSEECCBGGG--------------------------------C
T ss_pred CcCCccc-----------CcCCHHHhcCCCCCEEECCCCceeeecCc--------------------------------c
Confidence 9999876 34567788899999999988765322211 1
Q ss_pred cccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchh
Q 046577 438 NEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDL 513 (878)
Q Consensus 438 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l 513 (878)
..+++|++|++++|.++... |.+ +..+++|+.|++++ +.++...|. .+.+++|+.|++.+++.+
T Consensus 241 ---~~l~~L~~L~Ls~N~l~~~~-----p~~-l~~l~~L~~L~Ls~-N~l~~~ip~--~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 241 ---GLSKNLNGLDLRNNRIYGTL-----PQG-LTQLKFLHSLNVSF-NNLCGEIPQ--GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ---CCCTTCCEEECCSSCCEECC-----CGG-GGGCTTCCEEECCS-SEEEEECCC--STTGGGSCGGGTCSSSEE
T ss_pred ---cccCCCCEEECcCCcccCcC-----ChH-HhcCcCCCEEECcC-CcccccCCC--CccccccChHHhcCCCCc
Confidence 15789999999999776431 222 22578999999999 456644454 378899999999988744
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=8.9e-21 Score=203.43 Aligned_cols=283 Identities=13% Similarity=0.198 Sum_probs=173.0
Q ss_pred cceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEe
Q 046577 208 KCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCL 286 (878)
Q Consensus 208 ~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l 286 (878)
.++.++++++.+..+|..+ .+++++|++++|.... ++...|.++++|++|++++|.++.+ |..++++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISE---LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCc---cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4556666666666666544 2567777777766544 5554566777777777777777655 566677777777777
Q ss_pred cCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCc--cCcchhcCCccccEEEcccCcc
Q 046577 287 DESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKV--IAPNVISSLIRLEELYMCNCSI 363 (878)
Q Consensus 287 ~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~ 363 (878)
++|.+.. +|..+. .+|++|++++|.+..+|.. ++++++|++|++++|. ++. +....+..+ +|++|++++|.+
T Consensus 110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCC
Confidence 7777665 555544 6677777777777666543 6667777777777766 432 233335555 677777766665
Q ss_pred hhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCch-h-hhcccccccccccCcccccccccccccccccccccc
Q 046577 364 EWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAG-F-LARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKV 441 (878)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~ 441 (878)
. ..+..+ .++|++|++++|.....+.. + .+++|+.++++++.+...... .+.
T Consensus 185 ~------------~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~---------~~~--- 238 (332)
T 2ft3_A 185 T------------GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG---------SLS--- 238 (332)
T ss_dssp S------------SCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT---------GGG---
T ss_pred C------------ccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh---------Hhh---
Confidence 4 112222 14666777776666555432 2 456666666666655544321 122
Q ss_pred cCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcc------cCCcCEEEEeCCchhHH
Q 046577 442 ALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGS------LKQLQHLDIRDCKDLQE 515 (878)
Q Consensus 442 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~------l~~L~~L~l~~~~~l~~ 515 (878)
.+++|++|++++|.++.+ |. + +..+++|+.|++++ +.++.+.+. .+.. .++|+.|++.+++ +..
T Consensus 239 ~l~~L~~L~L~~N~l~~l-----p~-~-l~~l~~L~~L~l~~-N~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~N~-~~~ 308 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRV-----PA-G-LPDLKLLQVVYLHT-NNITKVGVN-DFCPVGFGVKRAYYNGISLFNNP-VPY 308 (332)
T ss_dssp GCTTCCEEECCSSCCCBC-----CT-T-GGGCTTCCEEECCS-SCCCBCCTT-SSSCSSCCSSSCCBSEEECCSSS-SCG
T ss_pred CCCCCCEEECCCCcCeec-----Ch-h-hhcCccCCEEECCC-CCCCccChh-HccccccccccccccceEeecCc-ccc
Confidence 678999999999877743 22 2 22578899999998 567765332 2222 4678999999988 432
Q ss_pred --HhhcccCCCCCCcccCcccceeccccc
Q 046577 516 --IISENRADQVIPYFVFPQLTTLRLQDL 542 (878)
Q Consensus 516 --~~~~~~~~~~~~~~~~p~L~~L~l~~c 542 (878)
+...... .+++|+.++++++
T Consensus 309 ~~~~~~~~~-------~l~~L~~l~l~~n 330 (332)
T 2ft3_A 309 WEVQPATFR-------CVTDRLAIQFGNY 330 (332)
T ss_dssp GGSCGGGGT-------TBCCSTTEEC---
T ss_pred cccCccccc-------ccchhhhhhcccc
Confidence 2222222 3778888888775
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=4.5e-21 Score=204.56 Aligned_cols=222 Identities=19% Similarity=0.259 Sum_probs=126.9
Q ss_pred ccceEEEEeccccccCCCCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEE
Q 046577 207 KKCYAISIRYCCIHELPNAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLC 285 (878)
Q Consensus 207 ~~~~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~ 285 (878)
.+++.|+++++.+..+|..+ .+++|++|++++|.... +|.. |.++++|++|++++|.+..+|..++.+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~---lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME---LPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC---CCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc---hhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 34666666666666665544 45666666666665542 5544 3556666666666666666666666666666666
Q ss_pred ecCccccccchhhhcC---------CCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEE
Q 046577 286 LDESILRDIDIAIIGK---------LENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEEL 356 (878)
Q Consensus 286 l~~~~~~~~~p~~i~~---------L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L 356 (878)
+++|.+.+.+|..++. +++|++|++++|.++.+|..++++++|++|++++|. +..+|.. ++++++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEE
Confidence 6665555445554443 556666666666555555556666666666666555 5555554 5555555555
Q ss_pred EcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCccccccccccccccccc
Q 046577 357 YMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLL 436 (878)
Q Consensus 357 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~ 436 (878)
++++|.+. +..+..++
T Consensus 235 ~Ls~n~~~-----------~~~p~~~~----------------------------------------------------- 250 (328)
T 4fcg_A 235 DLRGCTAL-----------RNYPPIFG----------------------------------------------------- 250 (328)
T ss_dssp ECTTCTTC-----------CBCCCCTT-----------------------------------------------------
T ss_pred ECcCCcch-----------hhhHHHhc-----------------------------------------------------
Confidence 55555443 12222333
Q ss_pred ccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCc
Q 046577 437 FNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCK 511 (878)
Q Consensus 437 l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 511 (878)
.+++|++|++++|++... + |.+ +..+++|+.|+|++|+....+ | ..++.+++|+.+.+....
T Consensus 251 -----~l~~L~~L~L~~n~~~~~----~-p~~-~~~l~~L~~L~L~~n~~~~~i-P-~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 251 -----GRAPLKRLILKDCSNLLT----L-PLD-IHRLTQLEKLDLRGCVNLSRL-P-SLIAQLPANCIILVPPHL 312 (328)
T ss_dssp -----CCCCCCEEECTTCTTCCB----C-CTT-GGGCTTCCEEECTTCTTCCCC-C-GGGGGSCTTCEEECCGGG
T ss_pred -----CCCCCCEEECCCCCchhh----c-chh-hhcCCCCCEEeCCCCCchhhc-c-HHHhhccCceEEeCCHHH
Confidence 355566666665532211 1 111 125677888888887766665 3 347788888888776443
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=9.3e-21 Score=211.66 Aligned_cols=244 Identities=20% Similarity=0.294 Sum_probs=194.1
Q ss_pred ceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEec
Q 046577 209 CYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLD 287 (878)
Q Consensus 209 ~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~ 287 (878)
.+.++..+..+..+|..+. ++++.|++++|.... ++...|.++++|++|+|++|.+..+ +..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQI---IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCE---ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCe---eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456666777888887664 689999999998766 6766789999999999999999876 4778899999999999
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccch-hhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhH
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLPK-ALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWE 366 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 366 (878)
+|.+....+..|..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--
Confidence 999988445578999999999999999998876 58899999999999987788888877899999999999998876
Q ss_pred HhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCc
Q 046577 367 VERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNL 446 (878)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L 446 (878)
.+..+..+++|+.|++++|.+..++... |. .+++|
T Consensus 199 -----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------------------~~---~l~~L 233 (440)
T 3zyj_A 199 -----------EIPNLTPLIKLDELDLSGNHLSAIRPGS-------------------------------FQ---GLMHL 233 (440)
T ss_dssp -----------SCCCCTTCSSCCEEECTTSCCCEECTTT-------------------------------TT---TCTTC
T ss_pred -----------cccccCCCcccCEEECCCCccCccChhh-------------------------------hc---cCccC
Confidence 2335778888999999888765443221 11 57889
Q ss_pred ceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCc
Q 046577 447 EALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCK 511 (878)
Q Consensus 447 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 511 (878)
+.|++++|.++.+....+ ..+++|+.|+|++ +.++.+ +...+..+++|+.|++++|+
T Consensus 234 ~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 234 QKLWMIQSQIQVIERNAF------DNLQSLVEINLAH-NNLTLL-PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTCCCCEECTTSS------TTCTTCCEEECTT-SCCCCC-CTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCceeEEChhhh------cCCCCCCEEECCC-CCCCcc-ChhHhccccCCCEEEcCCCC
Confidence 999999988876533332 2578899999998 567775 44557788899999998877
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=1e-20 Score=212.17 Aligned_cols=244 Identities=20% Similarity=0.270 Sum_probs=192.4
Q ss_pred ceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEec
Q 046577 209 CYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLD 287 (878)
Q Consensus 209 ~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~ 287 (878)
.+.++..+..+..+|..+. +++++|++++|.+.. ++...|.++++|++|+|++|.+..+ |..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~---~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQM---IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCce---ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3456666677778887654 689999999998765 6666689999999999999999876 4788999999999999
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccch-hhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhH
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLPK-ALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWE 366 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 366 (878)
+|.+....+..+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-- 209 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-- 209 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS--
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc--
Confidence 999988555668899999999999999998876 48899999999999987788898877899999999999998876
Q ss_pred HhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCc
Q 046577 367 VERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNL 446 (878)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L 446 (878)
.+..+..+++|+.|++++|.+..++... +. .+++|
T Consensus 210 -----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------------------~~---~l~~L 244 (452)
T 3zyi_A 210 -----------DMPNLTPLVGLEELEMSGNHFPEIRPGS-------------------------------FH---GLSSL 244 (452)
T ss_dssp -----------SCCCCTTCTTCCEEECTTSCCSEECGGG-------------------------------GT---TCTTC
T ss_pred -----------ccccccccccccEEECcCCcCcccCccc-------------------------------cc---CccCC
Confidence 2345778888999998888765443221 11 57888
Q ss_pred ceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCc
Q 046577 447 EALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCK 511 (878)
Q Consensus 447 ~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 511 (878)
+.|++++|.++.+....+ ..+++|+.|+|++ +.++.+ +...+..+++|++|++++|+
T Consensus 245 ~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 245 KKLWVMNSQVSLIERNAF------DGLASLVELNLAH-NNLSSL-PHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECTTSCCCEECTTTT------TTCTTCCEEECCS-SCCSCC-CTTSSTTCTTCCEEECCSSC
T ss_pred CEEEeCCCcCceECHHHh------cCCCCCCEEECCC-CcCCcc-ChHHhccccCCCEEEccCCC
Confidence 899998887776533322 2578899999988 567765 44556778888899888876
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=5.1e-23 Score=232.32 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=89.7
Q ss_pred CCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC-----CCccccccccCccEEEecCccccccchhhhc-CC
Q 046577 229 PQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF-----SLPSSIDLLVKLKTLCLDESILRDIDIAIIG-KL 302 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~-~L 302 (878)
++|++|+++++..... -...+|..+++|++|++++|.+. .++..+..+++|++|++++|.+....+..+. .+
T Consensus 3 ~~l~~L~Ls~~~l~~~--~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDA--RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHH--HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCch--hHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 3456666666654332 22333566677777777777666 3455666667777777777766543333332 34
Q ss_pred C----CCCEEEcCCCCCc-----ccchhhcCCCCccEEecCCCCCCCccCcchh-----cCCccccEEEcccCcchhHHh
Q 046577 303 E----NLEILSFVRSDTV-----QLPKALGQLTKLRLLDLTDCFHLKVIAPNVI-----SSLIRLEELYMCNCSIEWEVE 368 (878)
Q Consensus 303 ~----~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~ 368 (878)
. +|++|++++|.+. .+|..+.++++|++|++++|. +.......+ ...++|++|++++|.+.....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 4 5777777777665 345666677777777777766 443221111 124457777777666541110
Q ss_pred hhcccCCCCChhhhcCCCCCcEEEEEecCC
Q 046577 369 RANSKRSNASLDELMHLRWLTTLEIDVKNE 398 (878)
Q Consensus 369 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (878)
......+..+++|++|++++|..
T Consensus 160 -------~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 160 -------EPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp -------HHHHHHHHHCTTCCEEECCSSBC
T ss_pred -------HHHHHHHhhCCCCCEEECcCCCc
Confidence 11234455566666666666543
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=3.3e-22 Score=233.53 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=30.9
Q ss_pred cCCCceEEEeccCccceeecccccccccc-ccccccceeecccccccccccccCCCCCCcccceeeEEeecccc
Q 046577 653 FHNLEILTLFNFSFHEEVFSMEGCLEKHV-GKLATIKELELYRHYHLKQLCKQDSKLGPIFQYLEILKVYHCQS 725 (878)
Q Consensus 653 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~-~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~L~~L~l~~c~~ 725 (878)
+++|+.|++++|. +++. + ...+ ..+++|++|++++|+. +...... ....+++|++|++++|+.
T Consensus 455 ~~~L~~L~L~~~~-i~~~----~--~~~l~~~~~~L~~L~L~~n~~-~~~~~~~--~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDL----G--MHHVLSGCDSLRKLEIRDCPF-GDKALLA--NASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCC-SSHH----H--HHHHHHHCTTCCEEEEESCSC-CHHHHHH--TGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCC-CcHH----H--HHHHHhcCCCcCEEECcCCCC-cHHHHHH--HHHhCCCCCEEeeeCCCC
Confidence 6666666666543 2211 0 1111 3456666666666653 2110000 013457777777777764
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.85 E-value=8.7e-22 Score=229.97 Aligned_cols=211 Identities=16% Similarity=0.071 Sum_probs=115.7
Q ss_pred hhhCCCCCcEEEeeCCCCCC-Cccccc-cccCccEEEecCc-ccccc-chhhhcCCCCCCEEEcCCCCCcc-----cchh
Q 046577 251 FFVGMRKLKVVDFTGMQLFS-LPSSID-LLVKLKTLCLDES-ILRDI-DIAIIGKLENLEILSFVRSDTVQ-----LPKA 321 (878)
Q Consensus 251 ~~~~l~~Lr~L~L~~~~i~~-lp~~~~-~l~~L~~L~l~~~-~~~~~-~p~~i~~L~~L~~L~l~~~~l~~-----lp~~ 321 (878)
++..+++|++|+++++.+.. .+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.++. ++..
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 34567788888888877662 234443 5778888888877 33321 34444577888888888876542 2222
Q ss_pred hcCCCCccEEecCCCCCCCccCcc----hhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecC
Q 046577 322 LGQLTKLRLLDLTDCFHLKVIAPN----VISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKN 397 (878)
Q Consensus 322 i~~L~~L~~L~l~~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 397 (878)
...+++|++|++++|. ..++.. .+.++++|++|++++|.... .....+..+++|+.|+++.+.
T Consensus 180 ~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-----------~l~~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLE-----------KLATLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp CTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHH-----------HHHHHHHHCTTCSEEECSBCC
T ss_pred hhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHH-----------HHHHHHhcCCcceEccccccc
Confidence 3466788888888775 222211 13446788888887773321 134455667788888765443
Q ss_pred CCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCccee-eeccccceeecccCCCCCcccccccCc
Q 046577 398 ESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEAL-EISEINVDKIWHYNQIPAAVFPHFQSL 476 (878)
Q Consensus 398 ~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L-~l~~~~l~~~~~~~~~~~~~~~~l~~L 476 (878)
....+.. +..+. + .+..+++|+.| .+.+... ..++. +...+++|
T Consensus 247 ~~~~~~~--~~~l~-----------------------~---~l~~~~~L~~Ls~~~~~~~-----~~l~~--~~~~~~~L 291 (594)
T 2p1m_B 247 AEVRPDV--YSGLS-----------------------V---ALSGCKELRCLSGFWDAVP-----AYLPA--VYSVCSRL 291 (594)
T ss_dssp CCCCHHH--HHHHH-----------------------H---HHHTCTTCCEEECCBTCCG-----GGGGG--GHHHHTTC
T ss_pred Cccchhh--HHHHH-----------------------H---HHhcCCCcccccCCcccch-----hhHHH--HHHhhCCC
Confidence 2100000 00000 0 01146666666 2222211 01110 01135777
Q ss_pred cEEeeccccccccccchhhhcccCCcCEEEEeCC
Q 046577 477 TRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDC 510 (878)
Q Consensus 477 ~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~ 510 (878)
++|++++|. ++.......+..+++|++|++++|
T Consensus 292 ~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 292 TTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 777777765 544323333556777777777776
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=9.4e-21 Score=200.84 Aligned_cols=243 Identities=21% Similarity=0.193 Sum_probs=168.8
Q ss_pred EEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC---ccccccccCccEEEec
Q 046577 211 AISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL---PSSIDLLVKLKTLCLD 287 (878)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l---p~~~~~l~~L~~L~l~ 287 (878)
.++.+++.++.+|..+. +++++|++++|.... +|..+|.++++|++|++++|.+..+ |..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~---i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccCc---cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666777776543 678888888887764 7887788888888888888888754 5667778888888888
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccch--hhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchh
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLPK--ALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEW 365 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 365 (878)
+|.+.. +|..+..+++|++|++++|.+..++. .+.++++|++|++++|. +..++...++++++|++|++++|.+..
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc
Confidence 888887 77778888888888888888887764 57888888888888887 666655557888888888888887651
Q ss_pred HHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCC
Q 046577 366 EVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPN 445 (878)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 445 (878)
...+..+..+++|++|++++|....++... +. .+++
T Consensus 165 ----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------------------------------~~---~l~~ 200 (306)
T 2z66_A 165 ----------NFLPDIFTELRNLTFLDLSQCQLEQLSPTA-------------------------------FN---SLSS 200 (306)
T ss_dssp ----------GEECSCCTTCTTCCEEECTTSCCCEECTTT-------------------------------TT---TCTT
T ss_pred ----------ccchhHHhhCcCCCEEECCCCCcCCcCHHH-------------------------------hc---CCCC
Confidence 012445666777888887776654432211 11 4667
Q ss_pred cceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccC-CcCEEEEeCCc
Q 046577 446 LEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLK-QLQHLDIRDCK 511 (878)
Q Consensus 446 L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~-~L~~L~l~~~~ 511 (878)
|++|++++|.++.+.... +..+++|+.|++++ +.++...+ ..+..++ +|++|++++|+
T Consensus 201 L~~L~L~~N~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~-~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFP------YKCLNSLQVLDYSL-NHIMTSKK-QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEEECTTSCCSBCCSGG------GTTCTTCCEEECTT-SCCCBCSS-SSCCCCCTTCCEEECTTCC
T ss_pred CCEEECCCCccCccChhh------ccCcccCCEeECCC-CCCcccCH-HHHHhhhccCCEEEccCCC
Confidence 777777777665432111 12466777777777 34554433 2245553 67777777766
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=202.94 Aligned_cols=278 Identities=16% Similarity=0.195 Sum_probs=211.1
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCcc-ccccccCccEEEecCccccccchhhhcCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPS-SIDLLVKLKTLCLDESILRDIDIAIIGKLENL 305 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L 305 (878)
.|+...+.+.+++.... +|..+ .++|++|++++|.++.+|. .++++++|++|++++|.+.+..|..|+++++|
T Consensus 29 ~C~~~~~c~~~~~~l~~---iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNS---IPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp EECTTSEEECCSTTCSS---CCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCeEeeCCCCCccc---ccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 45666677888887765 88865 3589999999999998865 79999999999999999998667889999999
Q ss_pred CEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCc-chhcCCccccEEEcccCc-chhHHhhhcccCCCCChhhh
Q 046577 306 EILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAP-NVISSLIRLEELYMCNCS-IEWEVERANSKRSNASLDEL 382 (878)
Q Consensus 306 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l 382 (878)
++|++++|.++.+|.. ++++++|++|++++|. ++.+|. ..++++++|++|++++|. +. ......+
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~-----------~~~~~~~ 170 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT-----------KIQRKDF 170 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-----------EECTTTT
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc-----------ccCHHHc
Confidence 9999999999999887 8999999999999998 888887 558999999999999984 33 2234567
Q ss_pred cCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeeccc
Q 046577 383 MHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHY 462 (878)
Q Consensus 383 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~ 462 (878)
+.+++|++|++++|........ .+. .+++|++|++++|.++.+.
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~-------------------------------~l~---~l~~L~~L~l~~n~l~~~~-- 214 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPK-------------------------------SLK---SIQNVSHLILHMKQHILLL-- 214 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTT-------------------------------TTT---TCSEEEEEEEECSCSTTHH--
T ss_pred cCCCCCCEEECCCCCcCccCHH-------------------------------HHh---ccccCCeecCCCCccccch--
Confidence 8899999999999876543221 111 5889999999999765331
Q ss_pred CCCCCcccccccCccEEeeccccccccccchh--hhcccCCcCEEEEeCCch----hHHHhhcccCCCCCCcccCcccce
Q 046577 463 NQIPAAVFPHFQSLTRLIVWRCHKLKYIFSAS--MIGSLKQLQHLDIRDCKD----LQEIISENRADQVIPYFVFPQLTT 536 (878)
Q Consensus 463 ~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~--~l~~l~~L~~L~l~~~~~----l~~~~~~~~~~~~~~~~~~p~L~~ 536 (878)
...+..+++|+.|++++ +.++...+.. .....+.++.++++++.- +..++.... .+++|++
T Consensus 215 ----~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~--------~l~~L~~ 281 (353)
T 2z80_A 215 ----EIFVDVTSSVECLELRD-TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN--------QISGLLE 281 (353)
T ss_dssp ----HHHHHHTTTEEEEEEES-CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH--------TCTTCCE
T ss_pred ----hhhhhhcccccEEECCC-CccccccccccccccccchhhccccccccccCcchhhhHHHHh--------cccCCCE
Confidence 11122478999999999 4566543211 123467788999988862 223333222 4899999
Q ss_pred eccccccccccccCCCCcCCCCCccEEEEccCCCccc
Q 046577 537 LRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKI 573 (878)
Q Consensus 537 L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~ 573 (878)
|+++++ +++.++... ...+++|++|++++++-...
T Consensus 282 L~Ls~N-~l~~i~~~~-~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 282 LEFSRN-QLKSVPDGI-FDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp EECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCBCCC
T ss_pred EECCCC-CCCccCHHH-HhcCCCCCEEEeeCCCccCc
Confidence 999994 777766543 35689999999999764433
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=1.2e-21 Score=220.98 Aligned_cols=269 Identities=15% Similarity=0.137 Sum_probs=178.8
Q ss_pred cccceEEEEeccccccCCCC--C-CCCCccEEEcCCCCCcccc--CcChhhhhCCCCCcEEEeeCCCCCCC-cccc-ccc
Q 046577 206 LKKCYAISIRYCCIHELPNA--L-ECPQLEFLCMSPEDSSLEV--SIPENFFVGMRKLKVVDFTGMQLFSL-PSSI-DLL 278 (878)
Q Consensus 206 ~~~~~~L~l~~~~~~~l~~~--~-~~~~Lr~L~l~~~~~~~~~--~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~-~~l 278 (878)
++++++|+++++.+...+.. + .+++|++|++++|.....+ .++ ..+..+++|++|++++|.+... +..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 35788999998887654321 2 6789999999999865210 133 3468899999999999998742 3233 335
Q ss_pred c----CccEEEecCccccc----cchhhhcCCCCCCEEEcCCCCCccc-chhh-----cCCCCccEEecCCCCCCCccC-
Q 046577 279 V----KLKTLCLDESILRD----IDIAIIGKLENLEILSFVRSDTVQL-PKAL-----GQLTKLRLLDLTDCFHLKVIA- 343 (878)
Q Consensus 279 ~----~L~~L~l~~~~~~~----~~p~~i~~L~~L~~L~l~~~~l~~l-p~~i-----~~L~~L~~L~l~~~~~l~~~~- 343 (878)
. +|++|++++|.+.. .++..+..+++|++|++++|.+... +..+ ...++|++|++++|. +....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHH
Confidence 5 69999999999884 4688999999999999999988632 2222 235789999999997 66533
Q ss_pred ---cchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhc-CCCCCcEEEEEecCCCcCCchhhhcccccccccccC
Q 046577 344 ---PNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELM-HLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEES 419 (878)
Q Consensus 344 ---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~ 419 (878)
...+..+++|++|++++|.+..... ......+. ..++|++|++++|..........
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~-------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l------------- 219 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGV-------RVLCQGLKDSPCQLEALKLESCGVTSDNCRDL------------- 219 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHH-------HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH-------------
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHH-------HHHHHHHhcCCCCceEEEccCCCCcHHHHHHH-------------
Confidence 2226778999999999998763221 01112222 36699999998886543211100
Q ss_pred cccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeecccccccccc---chhhh
Q 046577 420 TTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIF---SASMI 496 (878)
Q Consensus 420 l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~---~~~~l 496 (878)
...+..+++|++|++++|.+++.....+.+. +...+++|++|++++| .++... -...+
T Consensus 220 -----------------~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~-~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 220 -----------------CGIVASKASLRELALGSNKLGDVGMAELCPG-LLHPSSRLRTLWIWEC-GITAKGCGDLCRVL 280 (461)
T ss_dssp -----------------HHHHHHCTTCCEEECCSSBCHHHHHHHHHHH-HTSTTCCCCEEECTTS-CCCHHHHHHHHHHH
T ss_pred -----------------HHHHHhCCCccEEeccCCcCChHHHHHHHHH-HhcCCCCceEEECcCC-CCCHHHHHHHHHHH
Confidence 0001157889999999987664322111111 1113678999999986 555521 02335
Q ss_pred cccCCcCEEEEeCCchhHHH
Q 046577 497 GSLKQLQHLDIRDCKDLQEI 516 (878)
Q Consensus 497 ~~l~~L~~L~l~~~~~l~~~ 516 (878)
..+++|++|++++|. ++..
T Consensus 281 ~~~~~L~~L~Ls~n~-i~~~ 299 (461)
T 1z7x_W 281 RAKESLKELSLAGNE-LGDE 299 (461)
T ss_dssp HHCTTCCEEECTTCC-CHHH
T ss_pred hhCCCcceEECCCCC-CchH
Confidence 678899999998887 5443
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=9.9e-20 Score=204.12 Aligned_cols=243 Identities=19% Similarity=0.204 Sum_probs=182.8
Q ss_pred ccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccchhhhcCCCCCCEEE
Q 046577 231 LEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILS 309 (878)
Q Consensus 231 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 309 (878)
.+.++..+..... +|..+ .+++++|+|++|.++.+ |..|+++++|++|++++|.+.+..|..|.++.+|++|+
T Consensus 56 ~~~v~c~~~~l~~---iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 56 FSKVVCTRRGLSE---VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SCEEECCSSCCSS---CCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEECCCCcCc---cCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 4567766666544 78754 47899999999999976 67899999999999999999987778999999999999
Q ss_pred cCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCC
Q 046577 310 FVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWL 388 (878)
Q Consensus 310 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (878)
+++|.++.+|.. ++.+++|++|++++|. +..++...+.++++|++|++++|.... ......+..+++|
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~----------~i~~~~~~~l~~L 198 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLE----------YISEGAFEGLFNL 198 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC----------EECTTTTTTCTTC
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCcc----------ccChhhccCCCCC
Confidence 999999988766 8889999999999998 889988779999999999998864330 1123356778888
Q ss_pred cEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCc
Q 046577 389 TTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAA 468 (878)
Q Consensus 389 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 468 (878)
+.|++++|....+|.. ..+++|++|++++|.++.+....+
T Consensus 199 ~~L~L~~n~l~~~~~~------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~---- 238 (452)
T 3zyi_A 199 KYLNLGMCNIKDMPNL------------------------------------TPLVGLEELEMSGNHFPEIRPGSF---- 238 (452)
T ss_dssp CEEECTTSCCSSCCCC------------------------------------TTCTTCCEEECTTSCCSEECGGGG----
T ss_pred CEEECCCCcccccccc------------------------------------cccccccEEECcCCcCcccCcccc----
Confidence 9998888776544321 157788888888887776532222
Q ss_pred ccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccc
Q 046577 469 VFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDL 542 (878)
Q Consensus 469 ~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 542 (878)
..+++|+.|++++ +.++.+.+ ..+..+++|++|++++|. ++.++..... .+++|+.|++++.
T Consensus 239 --~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~N 300 (452)
T 3zyi_A 239 --HGLSSLKKLWVMN-SQVSLIER-NAFDGLASLVELNLAHNN-LSSLPHDLFT-------PLRYLVELHLHHN 300 (452)
T ss_dssp --TTCTTCCEEECTT-SCCCEECT-TTTTTCTTCCEEECCSSC-CSCCCTTSST-------TCTTCCEEECCSS
T ss_pred --cCccCCCEEEeCC-CcCceECH-HHhcCCCCCCEEECCCCc-CCccChHHhc-------cccCCCEEEccCC
Confidence 2578888888888 55666533 446778888888888876 5555443322 3667777777663
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=2.1e-19 Score=206.20 Aligned_cols=255 Identities=18% Similarity=0.153 Sum_probs=163.7
Q ss_pred cceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEec
Q 046577 208 KCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLD 287 (878)
Q Consensus 208 ~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~ 287 (878)
+++.|+++++.++.+|..+. ++|++|++++|.+.. +|. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~---lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTS---LPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSC---CCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCC---CCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 35667777777777776554 678888887777653 665 46778888888888777776 56778888888
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHH
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEV 367 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 367 (878)
+|.+.+ +|. .+.+|++|++++|+++.+|.. +++|++|++++|. +..+|. .+.+|+.|++++|.+.
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~--- 174 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLT--- 174 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS---
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCC---
Confidence 887776 555 567778888888877777763 4777888888776 666664 2456777777777665
Q ss_pred hhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcc
Q 046577 368 ERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLE 447 (878)
Q Consensus 368 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~ 447 (878)
..+ ..+++|+.|++++|.+..+|. .+++|+
T Consensus 175 ---------~l~---~~~~~L~~L~Ls~N~l~~l~~--------------------------------------~~~~L~ 204 (622)
T 3g06_A 175 ---------SLP---MLPSGLQELSVSDNQLASLPT--------------------------------------LPSELY 204 (622)
T ss_dssp ---------CCC---CCCTTCCEEECCSSCCSCCCC--------------------------------------CCTTCC
T ss_pred ---------CCc---ccCCCCcEEECCCCCCCCCCC--------------------------------------ccchhh
Confidence 111 345677777777776554443 245666
Q ss_pred eeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCC
Q 046577 448 ALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIP 527 (878)
Q Consensus 448 ~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 527 (878)
.|++++|.++.+ |. .+++|+.|++++ +.++.+ | ..+++|++|++++|. ++.++.
T Consensus 205 ~L~L~~N~l~~l-----~~-----~~~~L~~L~Ls~-N~L~~l-p----~~l~~L~~L~Ls~N~-L~~lp~--------- 258 (622)
T 3g06_A 205 KLWAYNNRLTSL-----PA-----LPSGLKELIVSG-NRLTSL-P----VLPSELKELMVSGNR-LTSLPM--------- 258 (622)
T ss_dssp EEECCSSCCSSC-----CC-----CCTTCCEEECCS-SCCSCC-C----CCCTTCCEEECCSSC-CSCCCC---------
T ss_pred EEECcCCccccc-----CC-----CCCCCCEEEccC-CccCcC-C----CCCCcCcEEECCCCC-CCcCCc---------
Confidence 666666655432 11 245666666666 355553 2 345666666666665 444332
Q ss_pred cccCcccceeccccccccccccCCCCcCCCCCccEEEEccCC
Q 046577 528 YFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCD 569 (878)
Q Consensus 528 ~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~ 569 (878)
.+++|++|+++++ .++.++.. ...+++|+.|++++++
T Consensus 259 --~~~~L~~L~Ls~N-~L~~lp~~--l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 --LPSGLLSLSVYRN-QLTRLPES--LIHLSSETTVNLEGNP 295 (622)
T ss_dssp --CCTTCCEEECCSS-CCCSCCGG--GGGSCTTCEEECCSCC
T ss_pred --ccccCcEEeCCCC-CCCcCCHH--HhhccccCEEEecCCC
Confidence 2566777777663 55555432 3346777777777754
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=202.58 Aligned_cols=242 Identities=18% Similarity=0.227 Sum_probs=184.0
Q ss_pred ccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccchhhhcCCCCCCEEE
Q 046577 231 LEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILS 309 (878)
Q Consensus 231 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 309 (878)
.+.++..+..... +|..+ .+++++|+|++|.+..+ +..|.++++|++|++++|.+....+..|.++.+|++|+
T Consensus 45 ~~~v~c~~~~l~~---iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 45 FSKVICVRKNLRE---VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp SCEEECCSCCCSS---CCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CCEEEeCCCCcCc---CCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 4567777666654 88765 47899999999999977 47899999999999999999986778899999999999
Q ss_pred cCCCCCcccch-hhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCC
Q 046577 310 FVRSDTVQLPK-ALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWL 388 (878)
Q Consensus 310 l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (878)
+++|+++.+|. .+..+++|++|++++|. +..++...+.++++|++|++++|.... ......+..+++|
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~----------~i~~~~~~~l~~L 187 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLS----------YISEGAFEGLSNL 187 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCC----------EECTTTTTTCSSC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcc----------eeCcchhhccccc
Confidence 99999998876 48999999999999998 888888779999999999998864430 1123457778889
Q ss_pred cEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCc
Q 046577 389 TTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAA 468 (878)
Q Consensus 389 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 468 (878)
++|++++|....+|.. ..+++|++|++++|.++.+....+
T Consensus 188 ~~L~L~~n~l~~~~~~------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~---- 227 (440)
T 3zyj_A 188 RYLNLAMCNLREIPNL------------------------------------TPLIKLDELDLSGNHLSAIRPGSF---- 227 (440)
T ss_dssp CEEECTTSCCSSCCCC------------------------------------TTCSSCCEEECTTSCCCEECTTTT----
T ss_pred CeecCCCCcCcccccc------------------------------------CCCcccCEEECCCCccCccChhhh----
Confidence 9999988876554421 157788888888887776533222
Q ss_pred ccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceecccc
Q 046577 469 VFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQD 541 (878)
Q Consensus 469 ~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 541 (878)
..+++|+.|++++ +.++.+.+ ..+..+++|++|+|++|. ++.++..... .+++|+.|++++
T Consensus 228 --~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~ 288 (440)
T 3zyj_A 228 --QGLMHLQKLWMIQ-SQIQVIER-NAFDNLQSLVEINLAHNN-LTLLPHDLFT-------PLHHLERIHLHH 288 (440)
T ss_dssp --TTCTTCCEEECTT-CCCCEECT-TSSTTCTTCCEEECTTSC-CCCCCTTTTS-------SCTTCCEEECCS
T ss_pred --ccCccCCEEECCC-CceeEECh-hhhcCCCCCCEEECCCCC-CCccChhHhc-------cccCCCEEEcCC
Confidence 2578888888888 56666533 446778888888888876 5555443322 366777777766
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=7.9e-21 Score=202.07 Aligned_cols=247 Identities=15% Similarity=0.140 Sum_probs=184.8
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+++|++|++++|.... ++...|.++++|++|++++|.+..++. ++.+++|++|++++|.+.+ ++ ..++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~ 102 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIE 102 (317)
T ss_dssp TGGGCSEEECTTSCCCC---CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE-EE----ECTTCC
T ss_pred cCCCCCEEECcCCccCc---CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc-cc----CCCCcC
Confidence 45688899998887765 676667889999999999998886665 8888899999999988876 44 347889
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhh-cCC
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDEL-MHL 385 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l-~~l 385 (878)
+|++++|.+..++. ..+++|++|++++|. +..++...++.+++|++|++++|.+. ...+..+ ..+
T Consensus 103 ~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~~l 168 (317)
T 3o53_A 103 TLHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASS 168 (317)
T ss_dssp EEECCSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCC-----------EEEGGGGGGGT
T ss_pred EEECCCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCC-----------cccHHHHhhcc
Confidence 99999988887764 347888999998887 77777655888889999999888775 2223344 357
Q ss_pred CCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCC
Q 046577 386 RWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQI 465 (878)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 465 (878)
++|++|++++|.+..++... .+++|++|++++|.++.+..
T Consensus 169 ~~L~~L~L~~N~l~~~~~~~------------------------------------~l~~L~~L~Ls~N~l~~l~~---- 208 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQV------------------------------------VFAKLKTLDLSSNKLAFMGP---- 208 (317)
T ss_dssp TTCCEEECTTSCCCEEECCC------------------------------------CCTTCCEEECCSSCCCEECG----
T ss_pred CcCCEEECCCCcCccccccc------------------------------------ccccCCEEECCCCcCCcchh----
Confidence 88888888887755443221 47899999999998876522
Q ss_pred CCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchh-HHHhhcccCCCCCCcccCcccceeccccccc
Q 046577 466 PAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDL-QEIISENRADQVIPYFVFPQLTTLRLQDLPK 544 (878)
Q Consensus 466 ~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 544 (878)
. +..+++|+.|++++ +.++.++. .+..+++|++|++++|+.. ..++... . .+++|+.|++.+++.
T Consensus 209 -~--~~~l~~L~~L~L~~-N~l~~l~~--~~~~l~~L~~L~l~~N~~~~~~~~~~~-~-------~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 209 -E--FQSAAGVTWISLRN-NKLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRDFF-S-------KNQRVQTVAKQTVKK 274 (317)
T ss_dssp -G--GGGGTTCSEEECTT-SCCCEECT--TCCCCTTCCEEECTTCCCBHHHHHHHH-H-------TCHHHHHHHHHHHHH
T ss_pred -h--hcccCcccEEECcC-Ccccchhh--HhhcCCCCCEEEccCCCccCcCHHHHH-h-------ccccceEEECCCchh
Confidence 1 22578999999999 56777632 3688999999999999843 2333322 2 488999999998887
Q ss_pred cccccC
Q 046577 545 LRCLYP 550 (878)
Q Consensus 545 L~~~~~ 550 (878)
++....
T Consensus 275 l~~~~~ 280 (317)
T 3o53_A 275 LTGQNE 280 (317)
T ss_dssp HHSSSS
T ss_pred ccCCch
Confidence 776543
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=3.2e-19 Score=204.62 Aligned_cols=259 Identities=19% Similarity=0.141 Sum_probs=204.4
Q ss_pred CCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEE
Q 046577 229 PQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEIL 308 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 308 (878)
.++++|+++++.... +|..++ ++|++|++++|.++.+|. .+++|++|++++|.+.+ +|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~~---lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLTT---LPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCSC---CCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEE
T ss_pred CCCcEEEecCCCcCc---cChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEE
Confidence 358899999998764 887653 799999999999999987 57899999999999987 776 78999999
Q ss_pred EcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCC
Q 046577 309 SFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWL 388 (878)
Q Consensus 309 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (878)
++++|.++.+|. .+++|++|++++|. ++.+|.. +++|++|++++|.+. ..+ ..+.+|
T Consensus 107 ~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~------------~l~---~~~~~L 163 (622)
T 3g06_A 107 SIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLA------------SLP---ALPSEL 163 (622)
T ss_dssp EECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCS------------CCC---CCCTTC
T ss_pred ECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCC------------CcC---CccCCC
Confidence 999999999887 67899999999998 8888864 488999999998775 111 134688
Q ss_pred cEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCc
Q 046577 389 TTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAA 468 (878)
Q Consensus 389 ~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 468 (878)
+.|++++|.+..+|. .+++|+.|++++|.++.+ |+
T Consensus 164 ~~L~L~~N~l~~l~~--------------------------------------~~~~L~~L~Ls~N~l~~l-----~~-- 198 (622)
T 3g06_A 164 CKLWAYNNQLTSLPM--------------------------------------LPSGLQELSVSDNQLASL-----PT-- 198 (622)
T ss_dssp CEEECCSSCCSCCCC--------------------------------------CCTTCCEEECCSSCCSCC-----CC--
T ss_pred CEEECCCCCCCCCcc--------------------------------------cCCCCcEEECCCCCCCCC-----CC--
Confidence 899988887665541 478999999999987743 22
Q ss_pred ccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccc
Q 046577 469 VFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCL 548 (878)
Q Consensus 469 ~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~ 548 (878)
.+++|+.|++++ +.++.++ ..+++|++|++++|. ++.++. .+++|++|+++++ +++.+
T Consensus 199 ---~~~~L~~L~L~~-N~l~~l~-----~~~~~L~~L~Ls~N~-L~~lp~-----------~l~~L~~L~Ls~N-~L~~l 256 (622)
T 3g06_A 199 ---LPSELYKLWAYN-NRLTSLP-----ALPSGLKELIVSGNR-LTSLPV-----------LPSELKELMVSGN-RLTSL 256 (622)
T ss_dssp ---CCTTCCEEECCS-SCCSSCC-----CCCTTCCEEECCSSC-CSCCCC-----------CCTTCCEEECCSS-CCSCC
T ss_pred ---ccchhhEEECcC-CcccccC-----CCCCCCCEEEccCCc-cCcCCC-----------CCCcCcEEECCCC-CCCcC
Confidence 258899999998 5677652 235899999999997 665541 4789999999994 67766
Q ss_pred cCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEeccCCccc
Q 046577 549 YPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSLSGKDAKM 617 (878)
Q Consensus 549 ~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 617 (878)
+. .+++|+.|++++| +++.+|. ....+++|+.|++++|.+..
T Consensus 257 p~-----~~~~L~~L~Ls~N-~L~~lp~---------------------~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 257 PM-----LPSGLLSLSVYRN-QLTRLPE---------------------SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CC-----CCTTCCEEECCSS-CCCSCCG---------------------GGGGSCTTCEEECCSCCCCH
T ss_pred Cc-----ccccCcEEeCCCC-CCCcCCH---------------------HHhhccccCEEEecCCCCCC
Confidence 54 4789999999996 6666652 12567888999999888654
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=1e-19 Score=192.77 Aligned_cols=219 Identities=20% Similarity=0.175 Sum_probs=159.3
Q ss_pred cEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccc-cccccCccEEEecCcccccc--chhhhcCCCCCCEE
Q 046577 232 EFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSS-IDLLVKLKTLCLDESILRDI--DIAIIGKLENLEIL 308 (878)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~--~p~~i~~L~~L~~L 308 (878)
+.++.+++.... +|..+ .++|++|++++|.++.+|.. ++++++|++|++++|.+... .|..+..+.+|++|
T Consensus 10 ~~l~c~~~~l~~---ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 83 (306)
T 2z66_A 10 TEIRCNSKGLTS---VPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83 (306)
T ss_dssp TEEECCSSCCSS---CCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEE
T ss_pred CEEEcCCCCccc---CCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEE
Confidence 456676666544 77654 46899999999999988764 68899999999999988752 26778889999999
Q ss_pred EcCCCCCcccchhhcCCCCccEEecCCCCCCCccCc-chhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCC
Q 046577 309 SFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAP-NVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRW 387 (878)
Q Consensus 309 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 387 (878)
++++|.+..+|..+..+++|++|++++|. +..++. ..+.++++|++|++++|.+. ......+..+++
T Consensus 84 ~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~ 151 (306)
T 2z66_A 84 DLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTR-----------VAFNGIFNGLSS 151 (306)
T ss_dssp ECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCE-----------ECSTTTTTTCTT
T ss_pred ECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCC-----------ccchhhcccCcC
Confidence 99999999898889999999999999987 777765 44888999999999988765 233455677788
Q ss_pred CcEEEEEecCCCc--CCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCC
Q 046577 388 LTTLEIDVKNESM--LPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQI 465 (878)
Q Consensus 388 L~~L~l~~~~~~~--~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 465 (878)
|++|++++|.... .|. .+. .+++|++|++++|.++.+....+
T Consensus 152 L~~L~l~~n~l~~~~~~~--------------------------------~~~---~l~~L~~L~Ls~n~l~~~~~~~~- 195 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPD--------------------------------IFT---ELRNLTFLDLSQCQLEQLSPTAF- 195 (306)
T ss_dssp CCEEECTTCEEGGGEECS--------------------------------CCT---TCTTCCEEECTTSCCCEECTTTT-
T ss_pred CCEEECCCCccccccchh--------------------------------HHh---hCcCCCEEECCCCCcCCcCHHHh-
Confidence 8888887765432 111 111 57788888888887665422221
Q ss_pred CCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCc
Q 046577 466 PAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCK 511 (878)
Q Consensus 466 ~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 511 (878)
..+++|+.|++++ +.++.+.+ ..+..+++|++|++++|.
T Consensus 196 -----~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 196 -----NSLSSLQVLNMSH-NNFFSLDT-FPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp -----TTCTTCCEEECTT-SCCSBCCS-GGGTTCTTCCEEECTTSC
T ss_pred -----cCCCCCCEEECCC-CccCccCh-hhccCcccCCEeECCCCC
Confidence 2467788888877 44555432 235667777777777776
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=1.2e-19 Score=190.04 Aligned_cols=149 Identities=21% Similarity=0.278 Sum_probs=84.9
Q ss_pred eEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecC
Q 046577 210 YAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDE 288 (878)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~ 288 (878)
+.++.+++.+..+|... .++|++|++++|.... ++...|.++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISH---VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCc---cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34555555555555433 3466666666665543 5544456666666666666666644 55566666666666666
Q ss_pred cc-ccccchhhhcCCCCCCEEEcCCCCCccc-chhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcc
Q 046577 289 SI-LRDIDIAIIGKLENLEILSFVRSDTVQL-PKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSI 363 (878)
Q Consensus 289 ~~-~~~~~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 363 (878)
|. +....|..+..+++|++|++++|.+..+ |..+.++++|++|++++|. +..++...++++++|++|++++|.+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcc
Confidence 64 5543355566666666666666665544 3335556666666666655 5555544455555555555555544
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=3.6e-19 Score=186.39 Aligned_cols=197 Identities=22% Similarity=0.285 Sum_probs=168.1
Q ss_pred eeCCCCCCCCCccccccceEEEEeccccccCCCC-C-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCC-C
Q 046577 192 VENEDVWELPDKESLKKCYAISIRYCCIHELPNA-L-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQ-L 268 (878)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~-i 268 (878)
..+..+..+|. ..++++++|+++++.+..++.. + .+++|++|++++|.... ++...|.++++|++|++++|. +
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 18 CPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR---IDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSCTTC
T ss_pred cCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce---eCHhhcCCccCCCEEeCCCCCCc
Confidence 34444555553 3467899999999999988754 3 89999999999998765 655668999999999999997 8
Q ss_pred CCC-ccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcch
Q 046577 269 FSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNV 346 (878)
Q Consensus 269 ~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~ 346 (878)
..+ |..+..+++|++|++++|.+.+..|..+.++++|++|++++|.++.+|.. ++++++|++|++++|. ++.++...
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 172 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERA 172 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHH
Confidence 877 78899999999999999999986688899999999999999999988765 8999999999999998 88998877
Q ss_pred hcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCch
Q 046577 347 ISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAG 404 (878)
Q Consensus 347 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (878)
+.++++|++|++++|.+. ...+..+..+++|+.|++++|....++..
T Consensus 173 ~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 219 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVA-----------HVHPHAFRDLGRLMTLYLFANNLSALPTE 219 (285)
T ss_dssp TTTCTTCCEEECCSSCCC-----------EECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred hcCccccCEEECCCCccc-----------ccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence 899999999999999876 33466788899999999999987766543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=2.2e-20 Score=198.63 Aligned_cols=264 Identities=14% Similarity=0.111 Sum_probs=197.2
Q ss_pred ccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEecCccccccchhhhcCCCCCCEEE
Q 046577 231 LEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILS 309 (878)
Q Consensus 231 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 309 (878)
++..+++.+.... .+..++..+++|++|++++|.+..++ ..++.+++|++|++++|.+.+ .+. +..+++|++|+
T Consensus 12 l~i~~ls~~~l~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~ 86 (317)
T 3o53_A 12 YKIEKVTDSSLKQ---ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESLSTLRTLD 86 (317)
T ss_dssp EEEESCCTTTHHH---HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTCTTCCEEE
T ss_pred eeEeeccccchhh---hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhcCCCCEEE
Confidence 4444555555433 56677788889999999999999774 789999999999999999987 443 99999999999
Q ss_pred cCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCc
Q 046577 310 FVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLT 389 (878)
Q Consensus 310 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 389 (878)
+++|.++.+|. .++|++|++++|. +..++.. .+++|++|++++|.+. ......++.+++|+
T Consensus 87 Ls~n~l~~l~~----~~~L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~-----------~~~~~~~~~l~~L~ 147 (317)
T 3o53_A 87 LNNNYVQELLV----GPSIETLHAANNN-ISRVSCS---RGQGKKNIYLANNKIT-----------MLRDLDEGCRSRVQ 147 (317)
T ss_dssp CCSSEEEEEEE----CTTCCEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCC-----------SGGGBCTGGGSSEE
T ss_pred CcCCccccccC----CCCcCEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCC-----------CccchhhhccCCCC
Confidence 99999887763 4899999999998 8887754 4788999999999876 22234567788999
Q ss_pred EEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcc
Q 046577 390 TLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAV 469 (878)
Q Consensus 390 ~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 469 (878)
+|++++|.....+... +.. .+++|++|++++|.++.+....
T Consensus 148 ~L~Ls~N~l~~~~~~~------------------------------~~~---~l~~L~~L~L~~N~l~~~~~~~------ 188 (317)
T 3o53_A 148 YLDLKLNEIDTVNFAE------------------------------LAA---SSDTLEHLNLQYNFIYDVKGQV------ 188 (317)
T ss_dssp EEECTTSCCCEEEGGG------------------------------GGG---GTTTCCEEECTTSCCCEEECCC------
T ss_pred EEECCCCCCCcccHHH------------------------------Hhh---ccCcCCEEECCCCcCccccccc------
Confidence 9999988765433211 111 4789999999999888652211
Q ss_pred cccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccc-cc
Q 046577 470 FPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLR-CL 548 (878)
Q Consensus 470 ~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~-~~ 548 (878)
.+++|+.|++++ +.++.+++. +..+++|++|++++|. ++.++.... .+++|+.|++++++ +. ..
T Consensus 189 --~l~~L~~L~Ls~-N~l~~l~~~--~~~l~~L~~L~L~~N~-l~~l~~~~~--------~l~~L~~L~l~~N~-~~~~~ 253 (317)
T 3o53_A 189 --VFAKLKTLDLSS-NKLAFMGPE--FQSAAGVTWISLRNNK-LVLIEKALR--------FSQNLEHFDLRGNG-FHCGT 253 (317)
T ss_dssp --CCTTCCEEECCS-SCCCEECGG--GGGGTTCSEEECTTSC-CCEECTTCC--------CCTTCCEEECTTCC-CBHHH
T ss_pred --ccccCCEEECCC-CcCCcchhh--hcccCcccEEECcCCc-ccchhhHhh--------cCCCCCEEEccCCC-ccCcC
Confidence 378999999999 677776443 7889999999999997 766654432 48899999999853 33 21
Q ss_pred cCCCCcCCCCCccEEEEccCCCccc
Q 046577 549 YPGMHTPEWLALEMLFVYRCDKLKI 573 (878)
Q Consensus 549 ~~~~~~~~~~~L~~L~l~~C~~L~~ 573 (878)
.. .....+++|+.|++.+++.++.
T Consensus 254 ~~-~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 254 LR-DFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp HH-HHHHTCHHHHHHHHHHHHHHHS
T ss_pred HH-HHHhccccceEEECCCchhccC
Confidence 11 1234467777777776655543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=5.1e-19 Score=199.16 Aligned_cols=240 Identities=15% Similarity=0.154 Sum_probs=176.4
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+++|++|++++|.... +++..|..+++|++|+|++|.+...+. ++.+++|++|++++|.+.+ +|. .++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~----~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQ---ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LLV----GPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCC---CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EEE----CTTCC
T ss_pred cCCCccEEEeeCCcCCC---CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CCC----CCCcC
Confidence 34588999998888765 666667889999999999998886654 8888999999999998876 442 37899
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhc-CC
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELM-HL 385 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~l 385 (878)
+|++++|.+..+|. ..+++|++|++++|. +..+++..++++++|++|++++|.+. +..+..+. .+
T Consensus 103 ~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~l~~~l 168 (487)
T 3oja_A 103 TLHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASS 168 (487)
T ss_dssp EEECCSSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC-----------EEEGGGGGGGT
T ss_pred EEECcCCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC-----------CcChHHHhhhC
Confidence 99999998887765 357889999999888 77776555888899999999888776 22345554 67
Q ss_pred CCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCC
Q 046577 386 RWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQI 465 (878)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 465 (878)
++|+.|++++|.+..++... .+++|+.|++++|.++.+ |
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~------------------------------------~l~~L~~L~Ls~N~l~~~-----~ 207 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKGQV------------------------------------VFAKLKTLDLSSNKLAFM-----G 207 (487)
T ss_dssp TTCCEEECTTSCCCEEECCC------------------------------------CCTTCCEEECCSSCCCEE-----C
T ss_pred CcccEEecCCCccccccccc------------------------------------cCCCCCEEECCCCCCCCC-----C
Confidence 88888888887765443221 478899999999877754 2
Q ss_pred CCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchh-HHHhhcccCCCCCCcccCcccceecccccc
Q 046577 466 PAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDL-QEIISENRADQVIPYFVFPQLTTLRLQDLP 543 (878)
Q Consensus 466 ~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 543 (878)
+. +..+++|+.|++++ +.++.+++ .++.+++|+.|++++|+.. ..++.... .++.|+.+.+..+.
T Consensus 208 ~~--~~~l~~L~~L~Ls~-N~l~~lp~--~l~~l~~L~~L~l~~N~l~c~~~~~~~~--------~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 208 PE--FQSAAGVTWISLRN-NKLVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRDFFS--------KNQRVQTVAKQTVK 273 (487)
T ss_dssp GG--GGGGTTCSEEECTT-SCCCEECT--TCCCCTTCCEEECTTCCBCHHHHHHHHT--------TCHHHHHHHHHHHH
T ss_pred Hh--HcCCCCccEEEecC-CcCcccch--hhccCCCCCEEEcCCCCCcCcchHHHHH--------hCCCCcEEeccccc
Confidence 22 22578899999998 56776532 3678889999999988843 13333222 36777777776443
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=7.8e-18 Score=174.48 Aligned_cols=181 Identities=24% Similarity=0.349 Sum_probs=149.4
Q ss_pred cceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccc-cccccCccEEEe
Q 046577 208 KCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSS-IDLLVKLKTLCL 286 (878)
Q Consensus 208 ~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~-~~~l~~L~~L~l 286 (878)
..+.++++++.++.+|..+. ++++.|++++|.... ++...|.++++|++|++++|.++.+|.. +..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSS---LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSC---CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCe---eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 45678888888888887654 689999999998765 7777789999999999999999988654 578999999999
Q ss_pred cCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchh
Q 046577 287 DESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEW 365 (878)
Q Consensus 287 ~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 365 (878)
++|.+....+..+.++++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...++.+++|++|++++|.+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~- 170 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK- 170 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc-
Confidence 99999885556778999999999999999887654 7899999999999998 88888877889999999999998776
Q ss_pred HHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCch
Q 046577 366 EVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAG 404 (878)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (878)
......+..+++|++|++++|....++..
T Consensus 171 ----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 171 ----------RVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp ----------CCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ----------EeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 22334577889999999998877655543
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=7.2e-18 Score=176.14 Aligned_cols=182 Identities=22% Similarity=0.243 Sum_probs=156.9
Q ss_pred cccceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEE
Q 046577 206 LKKCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLC 285 (878)
Q Consensus 206 ~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~ 285 (878)
..+++.+++.++.++.+|..+. +++++|++++|.... ++...|.++++|++|++++|.++.++.. +.+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYT---FSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSE---EEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCc---cCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 4568889999999999987764 789999999998865 6666789999999999999999988764 7899999999
Q ss_pred ecCccccccchhhhcCCCCCCEEEcCCCCCcccch-hhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcch
Q 046577 286 LDESILRDIDIAIIGKLENLEILSFVRSDTVQLPK-ALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 286 l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
+++|.+.. +|..+..+++|++|++++|+++.+|. .+.++++|++|++++|. ++.+|.+.+..+++|++|++++|.+.
T Consensus 84 Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC
Confidence 99999997 89999999999999999999998874 58999999999999998 88999887889999999999999876
Q ss_pred hHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchh
Q 046577 365 WEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGF 405 (878)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 405 (878)
......+..+++|+.|++++|....+|..+
T Consensus 162 -----------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~ 191 (290)
T 1p9a_G 162 -----------ELPAGLLNGLENLDTLLLQENSLYTIPKGF 191 (290)
T ss_dssp -----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred -----------ccCHHHhcCcCCCCEEECCCCcCCccChhh
Confidence 223344678899999999999887776653
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=3.1e-19 Score=189.26 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=90.3
Q ss_pred CCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC--CCccccc-------cccCccEEEecCccccccchhhh
Q 046577 229 PQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF--SLPSSID-------LLVKLKTLCLDESILRDIDIAII 299 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~--~lp~~~~-------~l~~L~~L~l~~~~~~~~~p~~i 299 (878)
++|+.|++++|.. . +|..+... |++|++++|.+. .+|..+. ++++|++|++++|.+.+..|..+
T Consensus 43 ~~L~~l~l~~n~l-~---~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-A---DLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EECTTHHHHCCTT-C---CCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CCceeEeeccccc-c---cHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3455556666655 2 56654332 666666666664 3454444 56666666666666665566654
Q ss_pred --cCCCCCCEEEcCCCCCcccchhhcCC-----CCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcc
Q 046577 300 --GKLENLEILSFVRSDTVQLPKALGQL-----TKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANS 372 (878)
Q Consensus 300 --~~L~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 372 (878)
+.+++|++|++++|.++.+|..++.+ ++|++|++++|. +..++...++++++|++|++++|.+.....
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---- 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERG---- 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHH----
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchH----
Confidence 66666677777666666556555555 666677766666 566654446666667777766665431100
Q ss_pred cCCCCChhhh--cCCCCCcEEEEEecCCC
Q 046577 373 KRSNASLDEL--MHLRWLTTLEIDVKNES 399 (878)
Q Consensus 373 ~~~~~~~~~l--~~l~~L~~L~l~~~~~~ 399 (878)
.+..+ +.+++|++|++++|...
T Consensus 191 -----~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 191 -----LISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp -----HHHHSCTTSCTTCCEEECTTSCCC
T ss_pred -----HHHHHHhccCCCCCEEECCCCcCc
Confidence 12223 55666666666666544
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1e-17 Score=174.39 Aligned_cols=173 Identities=18% Similarity=0.300 Sum_probs=113.7
Q ss_pred cccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEecCccccccc
Q 046577 217 CCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDESILRDID 295 (878)
Q Consensus 217 ~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~ 295 (878)
..+..+|..+. ++|++|++++|.... ++...|.++++|++|++++|.+..++ ..++.+++|++|++++|.+.+..
T Consensus 17 ~~l~~ip~~l~-~~l~~L~ls~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 17 LNFYKIPDNLP-FSTKNLDLSFNPLRH---LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp SCCSSCCSSSC-TTCCEEECTTCCCCE---ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCccccCCCCC-CCccEEECCCCcccc---cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 34455555443 467777777777654 55555677777888888877777654 36777777888888887777755
Q ss_pred hhhhcCCCCCCEEEcCCCCCcccch-hhcCCCCccEEecCCCCCCCc--cCcchhcCCccccEEEcccCcchhHHhhhcc
Q 046577 296 IAIIGKLENLEILSFVRSDTVQLPK-ALGQLTKLRLLDLTDCFHLKV--IAPNVISSLIRLEELYMCNCSIEWEVERANS 372 (878)
Q Consensus 296 p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 372 (878)
+..+.++.+|++|++++|.+..++. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+..
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~------- 163 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS------- 163 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE-------
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCc-------
Confidence 5677777788888887777776655 47777778888887776 555 3444 7777778888877776641
Q ss_pred cCCCCChhhhcCCCCCc-EEEEEecCCCcCCc
Q 046577 373 KRSNASLDELMHLRWLT-TLEIDVKNESMLPA 403 (878)
Q Consensus 373 ~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~ 403 (878)
.....+..+..++.|. +|++++|....++.
T Consensus 164 -~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 164 -IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp -ECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred -CCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 0011233344444444 67777766554443
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.7e-17 Score=175.25 Aligned_cols=193 Identities=18% Similarity=0.230 Sum_probs=155.8
Q ss_pred ccccceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEE
Q 046577 205 SLKKCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTL 284 (878)
Q Consensus 205 ~~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L 284 (878)
.++++++|++.++.+..++....+++|++|++++|.... ++. |..+++|++|++++|.+..++ .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~---~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD---LAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC---CGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC---Chh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEE
Confidence 467888999998888888755578899999999887754 665 688999999999999988876 58888999999
Q ss_pred EecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcch
Q 046577 285 CLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 285 ~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
++++|.+.+ ++. +..+++|++|++++|.++.++. ++.+++|++|++++|. +..++. ++++++|++|++++|.+.
T Consensus 113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC
Confidence 999999887 554 8889999999999998888876 8889999999999987 777776 788999999999888775
Q ss_pred hHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCC
Q 046577 365 WEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALP 444 (878)
Q Consensus 365 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 444 (878)
....+..+++|+.|++++|.....+. +..++
T Consensus 187 -------------~~~~l~~l~~L~~L~L~~N~l~~~~~------------------------------------l~~l~ 217 (308)
T 1h6u_A 187 -------------DISPLASLPNLIEVHLKNNQISDVSP------------------------------------LANTS 217 (308)
T ss_dssp -------------CCGGGGGCTTCCEEECTTSCCCBCGG------------------------------------GTTCT
T ss_pred -------------cChhhcCCCCCCEEEccCCccCcccc------------------------------------ccCCC
Confidence 22337788899999988877654432 11588
Q ss_pred Ccceeeecccccee
Q 046577 445 NLEALEISEINVDK 458 (878)
Q Consensus 445 ~L~~L~l~~~~l~~ 458 (878)
+|+.|++++|.++.
T Consensus 218 ~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 218 NLFIVTLTNQTITN 231 (308)
T ss_dssp TCCEEEEEEEEEEC
T ss_pred CCCEEEccCCeeec
Confidence 89999999887663
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=5.1e-17 Score=168.30 Aligned_cols=192 Identities=21% Similarity=0.328 Sum_probs=164.1
Q ss_pred eeCCCCCCCCCccccccceEEEEeccccccCCCC-C-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC
Q 046577 192 VENEDVWELPDKESLKKCYAISIRYCCIHELPNA-L-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF 269 (878)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~ 269 (878)
..+..+..+|. ..+.++++|++++|.+..++.. + .+++|++|++++|.... +|..+|.++++|++|++++|.+.
T Consensus 23 ~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 23 CSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTDNKLQ 98 (270)
T ss_dssp CTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC---CCTTTTSSCTTCCEEECCSSCCC
T ss_pred ccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe---eChhhhcCCCCCCEEECCCCcCC
Confidence 34445555554 2346799999999999998863 3 89999999999998865 88888999999999999999999
Q ss_pred CCc-cccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchh
Q 046577 270 SLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVI 347 (878)
Q Consensus 270 ~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~ 347 (878)
.+| ..+..+++|++|++++|.+....+..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..++...+
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 177 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAF 177 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHh
Confidence 886 4578999999999999999996667789999999999999999998876 7999999999999998 888988778
Q ss_pred cCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCC
Q 046577 348 SSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNES 399 (878)
Q Consensus 348 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (878)
.++++|++|++++|.+. ......+..+++|+.|++++|...
T Consensus 178 ~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLK-----------RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCCcCEEECCCCcCC-----------cCCHHHhccccCCCEEEecCCCee
Confidence 99999999999999876 223345778899999999998754
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.7e-17 Score=168.68 Aligned_cols=187 Identities=13% Similarity=0.201 Sum_probs=131.6
Q ss_pred CCCCCCccccccceEEEEeccccccCCCC-C-CCCCccEEEcCCCC-CccccCcChhhhhCCCCCcEEEeeC-CCCCCCc
Q 046577 197 VWELPDKESLKKCYAISIRYCCIHELPNA-L-ECPQLEFLCMSPED-SSLEVSIPENFFVGMRKLKVVDFTG-MQLFSLP 272 (878)
Q Consensus 197 ~~~~~~~~~~~~~~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~-~~~~~~l~~~~~~~l~~Lr~L~L~~-~~i~~lp 272 (878)
+..+|. ...+++.|++++|.+..++.. + .+++|++|++++|. ... ++...|.++++|++|++++ |.++.+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~---i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ---LESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE---ECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce---eCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 444554 445777888888887777663 2 67788888888775 543 6666677788888888887 7777665
Q ss_pred -cccccccCccEEEecCccccccchhhhcCCCCCC---EEEcCCC-CCcccchh-hcCCCCcc-EEecCCCCCCCccCcc
Q 046577 273 -SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE---ILSFVRS-DTVQLPKA-LGQLTKLR-LLDLTDCFHLKVIAPN 345 (878)
Q Consensus 273 -~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~~~~~ 345 (878)
..|..+++|++|++++|.+.+ +|. ++.+.+|+ +|++++| .++.+|.. +.++++|+ +|++++|. ++.+|..
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~ 174 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGY 174 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTT
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHh
Confidence 467777888888888887777 665 77777777 8888888 77777654 77778888 88887776 6777776
Q ss_pred hhcCCccccEEEcccCc-chhHHhhhcccCCCCChhhhcCC-CCCcEEEEEecCCCcCCc
Q 046577 346 VISSLIRLEELYMCNCS-IEWEVERANSKRSNASLDELMHL-RWLTTLEIDVKNESMLPA 403 (878)
Q Consensus 346 ~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~ 403 (878)
.+.. ++|++|++++|. +. ......+..+ ++|+.|++++|....+|.
T Consensus 175 ~~~~-~~L~~L~L~~n~~l~-----------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 175 AFNG-TKLDAVYLNKNKYLT-----------VIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp TTTT-CEEEEEECTTCTTCC-----------EECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred hcCC-CCCCEEEcCCCCCcc-----------cCCHHHhhccccCCcEEECCCCccccCCh
Confidence 4444 778888887774 43 1123445666 778888877776655554
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=3e-17 Score=173.26 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=65.5
Q ss_pred CCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCE
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEI 307 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 307 (878)
+++|++|+++++.... ++. +..+++|++|++++|.+..++. +..+++|++|++++|.+.+ ++ .+..+++|++
T Consensus 40 l~~L~~L~l~~~~i~~---l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT---IEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCCC---CTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCE
T ss_pred cCCcCEEEeeCCCccC---chh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCE
Confidence 4455555555554432 432 4555555555555555555544 5555555555555555554 32 4555555555
Q ss_pred EEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcc
Q 046577 308 LSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSI 363 (878)
Q Consensus 308 L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 363 (878)
|++++|.++.+|. +..+++|++|++++|. +..++. ++.+++|++|++++|.+
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcC
Confidence 5555555555443 5555555555555554 444443 45555555555555544
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=4.4e-18 Score=176.46 Aligned_cols=152 Identities=27% Similarity=0.367 Sum_probs=69.1
Q ss_pred cccceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCcc-ccccccCccEE
Q 046577 206 LKKCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPS-SIDLLVKLKTL 284 (878)
Q Consensus 206 ~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L 284 (878)
+++++.|.+.++.+..++....+++|++|++++|.... ++ .+..+++|++|++++|.++.+|. .++.+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~---~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD---IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC---CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC---ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34455555555544444433344455555554444322 22 13444455555555554444422 23444445555
Q ss_pred EecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcc
Q 046577 285 CLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSI 363 (878)
Q Consensus 285 ~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 363 (878)
++++|.+.+..+..++++++|++|++++|.++.+|.. ++++++|++|++++|. +..++...++++++|++|++++|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcC
Confidence 5555444442333344444455555544444444333 3444445555554444 4444443344444444444444443
No 80
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=2.9e-18 Score=181.79 Aligned_cols=163 Identities=15% Similarity=0.210 Sum_probs=98.3
Q ss_pred CCCccEEEcCCCCCccccCcChhhh-hCCCCCcEEEeeCCCCCCCccccccc-----cCccEEEecCccccccchhhhcC
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFF-VGMRKLKVVDFTGMQLFSLPSSIDLL-----VKLKTLCLDESILRDIDIAIIGK 301 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~-~~l~~Lr~L~L~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~~~~~p~~i~~ 301 (878)
+++|++|++++|..... +|..+| ..+++|++|++++|.++.+|..++.+ ++|++|++++|.+.+..|..|++
T Consensus 94 l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGT--APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSC--CCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccch--hHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 56666777666665432 555543 66667777777777766666666665 66777777777766644466667
Q ss_pred CCCCCEEEcCCCCCcc---cchhh--cCCCCccEEecCCCCCCC---ccCcchhcCCccccEEEcccCcchhHHhhhccc
Q 046577 302 LENLEILSFVRSDTVQ---LPKAL--GQLTKLRLLDLTDCFHLK---VIAPNVISSLIRLEELYMCNCSIEWEVERANSK 373 (878)
Q Consensus 302 L~~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~l~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 373 (878)
+++|++|++++|++.. +|..+ +++++|++|++++|. ++ .++...+.++++|++|++++|.+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--------- 241 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLR--------- 241 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCC---------
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCC---------
Confidence 7777777777766442 23344 666777777777665 55 233333446667777777766654
Q ss_pred CCCCC-hhhhcCCCCCcEEEEEecCCCcCCch
Q 046577 374 RSNAS-LDELMHLRWLTTLEIDVKNESMLPAG 404 (878)
Q Consensus 374 ~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~ 404 (878)
+.. ...+..+++|++|++++|.+..+|..
T Consensus 242 --~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~ 271 (312)
T 1wwl_A 242 --DAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271 (312)
T ss_dssp --SSCCCSCCCCCTTCCEEECTTSCCSSCCSS
T ss_pred --cccchhhhhhcCCCCEEECCCCccChhhhh
Confidence 111 12334456677777766665555544
No 81
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=2.3e-17 Score=171.71 Aligned_cols=212 Identities=20% Similarity=0.280 Sum_probs=171.3
Q ss_pred CCCCCCCccccccceEEEEeccccccCCCC-C-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-
Q 046577 196 DVWELPDKESLKKCYAISIRYCCIHELPNA-L-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP- 272 (878)
Q Consensus 196 ~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp- 272 (878)
.+..+|. ...+++++|++++|.+..++.. + .+++|++|++++|.... ++...|.++++|++|++++|.+..++
T Consensus 18 ~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT---IEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp CCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE---ECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc---cCHHHccCCcCCCEEECCCCccCccCh
Confidence 3444443 2356799999999999988763 3 79999999999998765 77777899999999999999999774
Q ss_pred cccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcc--cchhhcCCCCccEEecCCCCCCCccCcchhcCC
Q 046577 273 SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQ--LPKALGQLTKLRLLDLTDCFHLKVIAPNVISSL 350 (878)
Q Consensus 273 ~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l 350 (878)
..+.++++|++|++++|.+.+..+..++.+++|++|++++|.+.. +|..++++++|++|++++|. +..++...+..+
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 172 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL 172 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhh
Confidence 779999999999999999998555579999999999999999986 68899999999999999998 888877667777
Q ss_pred cccc----EEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCccccccc
Q 046577 351 IRLE----ELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSS 426 (878)
Q Consensus 351 ~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~ 426 (878)
++|+ +|++++|.+. . .........+|+.|++++|....++...
T Consensus 173 ~~L~~l~l~L~ls~n~l~-----------~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------------------- 219 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMN-----------F-IQPGAFKEIRLKELALDTNQLKSVPDGI--------------------- 219 (276)
T ss_dssp HTCTTCCEEEECCSSCCC-----------E-ECTTSSCSCCEEEEECCSSCCSCCCTTT---------------------
T ss_pred hhccccceeeecCCCccc-----------c-cCccccCCCcccEEECCCCceeecCHhH---------------------
Confidence 7777 8999999876 1 1222233448999999999877666542
Q ss_pred ccccccccccccccccCCCcceeeecccccee
Q 046577 427 EITLDTSTLLFNEKVALPNLEALEISEINVDK 458 (878)
Q Consensus 427 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~ 458 (878)
+. .+++|+.|++++|.+..
T Consensus 220 ----------~~---~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 220 ----------FD---RLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp ----------TT---TCCSCCEEECCSSCBCC
T ss_pred ----------hc---ccccccEEEccCCcccc
Confidence 11 57788888888886654
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=4.9e-17 Score=169.83 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=88.0
Q ss_pred CCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
+++++.++++++.... +|..+ .+.+++|++++|.+..+ |..+..+++|++|++++|.+.+ ++.. +.+++|+
T Consensus 9 l~~l~~l~~~~~~l~~---ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~ 80 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA---LPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLG 80 (290)
T ss_dssp STTCCEEECTTSCCSS---CCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCC
T ss_pred cCCccEEECCCCCCCc---CCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCC
Confidence 4556666666665543 55543 24566666666666644 4456666666666666666665 3332 5666666
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCC
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLR 386 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (878)
+|++++|.++.+|..+..+++|++|++++|. ++.++.+.+.++++|++|++++|.+. ......+..++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~ 148 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-----------TLPPGLLTPTP 148 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCT
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCC-----------ccChhhccccc
Confidence 6666666666666666666666666666665 56665554666666666666666544 11222334455
Q ss_pred CCcEEEEEecCCCc
Q 046577 387 WLTTLEIDVKNESM 400 (878)
Q Consensus 387 ~L~~L~l~~~~~~~ 400 (878)
+|+.|++++|....
T Consensus 149 ~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 149 KLEKLSLANNNLTE 162 (290)
T ss_dssp TCCEEECTTSCCSC
T ss_pred CCCEEECCCCcCCc
Confidence 55555555544433
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=2.5e-17 Score=167.41 Aligned_cols=140 Identities=21% Similarity=0.263 Sum_probs=108.2
Q ss_pred cccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCC-CCCCcc-ccccccCccEEEecC-ccccccc
Q 046577 219 IHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQ-LFSLPS-SIDLLVKLKTLCLDE-SILRDID 295 (878)
Q Consensus 219 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~-i~~lp~-~~~~l~~L~~L~l~~-~~~~~~~ 295 (878)
+..+|. + .+++++|++++|.... +|...|.++++|++|++++|. ++.+|. .|+.+++|++|++++ |.+....
T Consensus 23 l~~ip~-~-~~~l~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS-L-PPSTQTLKLIETHLRT---IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC-C-CTTCCEEEEESCCCSE---ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC-C-CCcccEEEEeCCcceE---ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 666776 3 3478888888888765 777677888888888888886 777754 678888888888887 7887744
Q ss_pred hhhhcCCCCCCEEEcCCCCCcccchhhcCCCCcc---EEecCCCCCCCccCcchhcCCcccc-EEEcccCcch
Q 046577 296 IAIIGKLENLEILSFVRSDTVQLPKALGQLTKLR---LLDLTDCFHLKVIAPNVISSLIRLE-ELYMCNCSIE 364 (878)
Q Consensus 296 p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~~~~~~~~~l~~L~-~L~l~~~~~~ 364 (878)
+..|.++++|++|++++|.++.+|. ++.+++|+ +|++++|..++.++...+.++++|+ +|++++|.+.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 5678888888888888888888876 77777777 8888888337888776677788888 8887777654
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.72 E-value=2.4e-17 Score=209.77 Aligned_cols=169 Identities=17% Similarity=0.286 Sum_probs=135.6
Q ss_pred CCCccEEccC-CChHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCCchhHHHHHHHhcCCCCC
Q 046577 2 GSEDNFLINN-LNEEEAGRLFKMMAGDDVENRELKSTAIDVARACGGLPIALTTVAKALRGKSLHEWKNSLRELRTPSMV 80 (878)
Q Consensus 2 ~~~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k~~~~W~~~l~~l~~~~~~ 80 (878)
+..+.|++++ |+++|||+||.++|+. ..+++++++++|+++|+|+||||+++|++|+.+. .+|+..++.+......
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~ 351 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFK 351 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhh
Confidence 5668899996 9999999999999953 2345567899999999999999999999998776 4699999998765322
Q ss_pred Cc----CCchhhHHHHHHHHHhcCCCchhHHHHHHhccCCCC--CChhHHHHHHhhcccccCcchHHHHHHHHHHHHHHH
Q 046577 81 NF----EGVSAETYSSIELSFKYLKGGQLKELFQLCSLMGNS--IPTLKLLKYSIGLGIFQGVNKMEDARNKLYALVHEL 154 (878)
Q Consensus 81 ~~----~~~~~~i~~~L~lSy~~L~~~~lk~cFly~~~fp~~--i~~~~li~~w~~~g~~~~~~~~e~~~~~~~~~l~~L 154 (878)
.. ......+..++.+||+.||++ .|.||+|||+||++ |+.+.++..|.+++ +++ ..++++|
T Consensus 352 ~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~~~----~~~l~~L 418 (1249)
T 3sfz_A 352 RIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET--------EEV----EDILQEF 418 (1249)
T ss_dssp CSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------HHH----HHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH--------HHH----HHHHHHH
Confidence 11 111246899999999999998 89999999999985 67889999996542 222 2349999
Q ss_pred HhcccccccCCC--CcEEccHHHHHHHHHHhhcc
Q 046577 155 RDSCLLLEGDSN--KLISMHDVVRDVARSIACRD 186 (878)
Q Consensus 155 ~~r~l~~~~~~~--~~~~mHdl~~~l~~~~~~~e 186 (878)
++++|++..... .+|+|||++|++++..+.++
T Consensus 419 ~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 419 VNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 999999854332 35999999999999987765
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=4.1e-17 Score=169.13 Aligned_cols=160 Identities=21% Similarity=0.315 Sum_probs=134.6
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+++|+.|++.++.... ++. +..+++|++|++++|.+..++ .++.+++|++|++++|.+.+..+..++++++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~---~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS---VQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTSCCCC---CTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCCCccc---ccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 56889999999987654 553 688999999999999998876 688999999999999999985566689999999
Q ss_pred EEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCC
Q 046577 307 ILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHL 385 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (878)
+|++++|.++.+|.. ++++++|++|++++|. ++.++...++++++|++|++++|.+. ......++.+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l 180 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ-----------SLPEGVFDKL 180 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcC-----------ccCHHHhcCC
Confidence 999999999988765 7899999999999997 88888876789999999999999876 2334457888
Q ss_pred CCCcEEEEEecCCCcCCch
Q 046577 386 RWLTTLEIDVKNESMLPAG 404 (878)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~ 404 (878)
++|+.|++++|....++..
T Consensus 181 ~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp TTCCEEECCSSCCSCCCTT
T ss_pred ccCCEEECCCCcCCccCHH
Confidence 9999999999887665543
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.71 E-value=1.1e-16 Score=163.68 Aligned_cols=178 Identities=20% Similarity=0.266 Sum_probs=151.5
Q ss_pred cceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEe
Q 046577 208 KCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCL 286 (878)
Q Consensus 208 ~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l 286 (878)
..++++++++.+..+|..+. ++++.|++++|.... ++...|.++++|++|++++|.+..+ |..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLAT---LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCc---cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678888888888887765 689999999998765 6666789999999999999999976 456889999999999
Q ss_pred cCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchh
Q 046577 287 DESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEW 365 (878)
Q Consensus 287 ~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 365 (878)
++|.+.+..+..+..+++|++|++++|.++.+|.. ++++++|++|++++|. ++.++...++++++|++|++++|.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~- 168 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQ- 168 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCC-
Confidence 99999985667789999999999999999988876 6889999999999997 88888876899999999999999876
Q ss_pred HHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcC
Q 046577 366 EVERANSKRSNASLDELMHLRWLTTLEIDVKNESML 401 (878)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 401 (878)
......+..+++|+.|++++|.....
T Consensus 169 ----------~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 ----------SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ----------CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ----------ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 33345678889999999999886543
No 87
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.71 E-value=2.7e-17 Score=185.10 Aligned_cols=222 Identities=16% Similarity=0.153 Sum_probs=162.2
Q ss_pred cChhhhh---CCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhh
Q 046577 247 IPENFFV---GMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKAL 322 (878)
Q Consensus 247 l~~~~~~---~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i 322 (878)
+|..++. .+++|++|+|++|.+..+ |..|+.+++|++|++++|.+.+..| ++.+++|++|++++|.++.+|.
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-- 97 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-- 97 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE--
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC--
Confidence 5555432 233899999999999977 5789999999999999999987343 8999999999999999888764
Q ss_pred cCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCC
Q 046577 323 GQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLP 402 (878)
Q Consensus 323 ~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 402 (878)
.++|++|++++|. +..++.. .+++|++|++++|.+. +..+..++.+++|+.|++++|.....+
T Consensus 98 --~~~L~~L~L~~N~-l~~~~~~---~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 98 --GPSIETLHAANNN-ISRVSCS---RGQGKKNIYLANNKIT-----------MLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp --CTTCCEEECCSSC-CCCEEEC---CCSSCEEEECCSSCCC-----------SGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred --CCCcCEEECcCCc-CCCCCcc---ccCCCCEEECCCCCCC-----------CCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 3899999999998 7777753 5688999999999876 223445677888889988887654322
Q ss_pred chhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeec
Q 046577 403 AGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVW 482 (878)
Q Consensus 403 ~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~ 482 (878)
... +.. .+++|+.|++++|.++.+. +.. .+++|+.|+|+
T Consensus 161 ~~~------------------------------l~~---~l~~L~~L~Ls~N~l~~~~-----~~~---~l~~L~~L~Ls 199 (487)
T 3oja_A 161 FAE------------------------------LAA---SSDTLEHLNLQYNFIYDVK-----GQV---VFAKLKTLDLS 199 (487)
T ss_dssp GGG------------------------------GGG---GTTTCCEEECTTSCCCEEE-----CCC---CCTTCCEEECC
T ss_pred hHH------------------------------Hhh---hCCcccEEecCCCcccccc-----ccc---cCCCCCEEECC
Confidence 210 011 4788899999988777551 111 37888899988
Q ss_pred cccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccc
Q 046577 483 RCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDL 542 (878)
Q Consensus 483 ~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c 542 (878)
+ +.++.+++. +..+++|+.|++++|. +..++.... .+++|+.|+++++
T Consensus 200 ~-N~l~~~~~~--~~~l~~L~~L~Ls~N~-l~~lp~~l~--------~l~~L~~L~l~~N 247 (487)
T 3oja_A 200 S-NKLAFMGPE--FQSAAGVTWISLRNNK-LVLIEKALR--------FSQNLEHFDLRGN 247 (487)
T ss_dssp S-SCCCEECGG--GGGGTTCSEEECTTSC-CCEECTTCC--------CCTTCCEEECTTC
T ss_pred C-CCCCCCCHh--HcCCCCccEEEecCCc-Ccccchhhc--------cCCCCCEEEcCCC
Confidence 8 567776443 6788888888888887 554443221 3566677766664
No 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.69 E-value=2e-17 Score=190.75 Aligned_cols=142 Identities=20% Similarity=0.235 Sum_probs=113.3
Q ss_pred ccEEcc------CCChHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCC--chhHHHHHHHhcC
Q 046577 5 DNFLIN------NLNEEEAGRLFKMMAGDDVENRELKSTAIDVARACGGLPIALTTVAKALRGKS--LHEWKNSLRELRT 76 (878)
Q Consensus 5 ~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k~--~~~W~~~l~~l~~ 76 (878)
.+|+|+ +|+++|||+||+++.+.. .+++..+| |+|+||||+++|+.|+++. ..+|+.+
T Consensus 285 ~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~------ 350 (1221)
T 1vt4_I 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV------ 350 (1221)
T ss_dssp SSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred eEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC------
Confidence 467888 999999999999997532 22344444 9999999999999999873 3448643
Q ss_pred CCCCCcCCchhhHHHHHHHHHhcCCCchh-HHHHHHhccCCCC--CChhHHHHHHhhcccccCcchHHHHHHHHHHHHHH
Q 046577 77 PSMVNFEGVSAETYSSIELSFKYLKGGQL-KELFQLCSLMGNS--IPTLKLLKYSIGLGIFQGVNKMEDARNKLYALVHE 153 (878)
Q Consensus 77 ~~~~~~~~~~~~i~~~L~lSy~~L~~~~l-k~cFly~~~fp~~--i~~~~li~~w~~~g~~~~~~~~e~~~~~~~~~l~~ 153 (878)
....+..+|++||+.||++ . |+||+|||+||++ |..+.++.+|+++|. +++ + .+|++
T Consensus 351 --------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------edA-e---~~L~e 410 (1221)
T 1vt4_I 351 --------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SDV-M---VVVNK 410 (1221)
T ss_dssp --------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HHH-H---HHHHH
T ss_pred --------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------HHH-H---HHHHH
Confidence 1245899999999999998 7 9999999999985 666889999998871 122 2 34999
Q ss_pred HHhcccccccCCCCcEEccHHHHHHHH
Q 046577 154 LRDSCLLLEGDSNKLISMHDVVRDVAR 180 (878)
Q Consensus 154 L~~r~l~~~~~~~~~~~mHdl~~~l~~ 180 (878)
|+++||++..+...+|+|||++++++.
T Consensus 411 LvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 411 LHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 999999987555678999999999763
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=1.8e-16 Score=170.84 Aligned_cols=239 Identities=18% Similarity=0.205 Sum_probs=168.6
Q ss_pred EEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCC-Cc-cccccccCccE-EEec
Q 046577 211 AISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFS-LP-SSIDLLVKLKT-LCLD 287 (878)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp-~~~~~l~~L~~-L~l~ 287 (878)
.++-++++++++|..+ .++++.|++++|.+.. +|.++|.++++|++|+|++|.+.+ +| ..|.++++|+. +.+.
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRV---IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSE---ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCC---cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4556666777787765 3678888888888765 888778888888888888888753 44 45777877664 5556
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCc-cccEEEcccCcchh
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLI-RLEELYMCNCSIEW 365 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~-~L~~L~l~~~~~~~ 365 (878)
+|.+....|..|..+++|++|++++|.+..+|.. +....++..|++.++..+..++...+..+. .++.|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 6778775567788888888888888888877653 455667778888776667888776566664 5778888887765
Q ss_pred HHhhhcccCCCCChhhhcCCCCCcEEEEEe-cCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCC
Q 046577 366 EVERANSKRSNASLDELMHLRWLTTLEIDV-KNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALP 444 (878)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 444 (878)
..........+|++|.+.. +....+|.++ |. .++
T Consensus 168 -----------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~-------------------------------f~---~l~ 202 (350)
T 4ay9_X 168 -----------EIHNSAFNGTQLDELNLSDNNNLEELPNDV-------------------------------FH---GAS 202 (350)
T ss_dssp -----------EECTTSSTTEEEEEEECTTCTTCCCCCTTT-------------------------------TT---TEE
T ss_pred -----------CCChhhccccchhHHhhccCCcccCCCHHH-------------------------------hc---cCc
Confidence 1222223345677777753 4455554432 12 578
Q ss_pred CcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCc
Q 046577 445 NLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCK 511 (878)
Q Consensus 445 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 511 (878)
+|++|++++|.++.+ |+. .+.+|++|.+.++..++.+++ +..+++|+.+++.+..
T Consensus 203 ~L~~LdLs~N~l~~l-----p~~----~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 203 GPVILDISRTRIHSL-----PSY----GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTYPS 257 (350)
T ss_dssp CCSEEECTTSCCCCC-----CSS----SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSCHH
T ss_pred ccchhhcCCCCcCcc-----Chh----hhccchHhhhccCCCcCcCCC---chhCcChhhCcCCCCc
Confidence 889999998887753 333 477888888888888888754 6788888888886543
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=8.1e-17 Score=173.07 Aligned_cols=149 Identities=15% Similarity=0.155 Sum_probs=102.2
Q ss_pred ccEEEcCCCCCccccCcChhhhhCC--CCCcEEEeeCCCCCCCccccccccCccEEEecCcccccc-chhhhcCCCCCCE
Q 046577 231 LEFLCMSPEDSSLEVSIPENFFVGM--RKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDI-DIAIIGKLENLEI 307 (878)
Q Consensus 231 Lr~L~l~~~~~~~~~~l~~~~~~~l--~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~i~~L~~L~~ 307 (878)
++.++++++. +.+..+..+ +++++|+++++.+...+..+..+++|++|++++|.+... +|..+..+++|++
T Consensus 49 ~~~l~l~~~~------~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 49 WQTLDLTGKN------LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp SSEEECTTCB------CCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred heeecccccc------CCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4556666554 333445666 778888888887776655566778888888888877654 6677778888888
Q ss_pred EEcCCCCCc-ccchhhcCCCCccEEecCCCCCCCc--cCcchhcCCccccEEEcccC-cchhHHhhhcccCCCCChhhhc
Q 046577 308 LSFVRSDTV-QLPKALGQLTKLRLLDLTDCFHLKV--IAPNVISSLIRLEELYMCNC-SIEWEVERANSKRSNASLDELM 383 (878)
Q Consensus 308 L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~--~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~ 383 (878)
|++++|.+. ..|..++++++|++|++++|..++. ++.. +.++++|++|++++| .+... .....+.
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~----------~~~~~~~ 191 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK----------HVQVAVA 191 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH----------HHHHHHH
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH----------HHHHHHH
Confidence 888888776 5566777788888888888744553 4433 677788888888777 55411 1234456
Q ss_pred CCC-CCcEEEEEec
Q 046577 384 HLR-WLTTLEIDVK 396 (878)
Q Consensus 384 ~l~-~L~~L~l~~~ 396 (878)
.++ +|++|++++|
T Consensus 192 ~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 192 HVSETITQLNLSGY 205 (336)
T ss_dssp HSCTTCCEEECCSC
T ss_pred hcccCCCEEEeCCC
Confidence 667 7777777765
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=5.9e-16 Score=166.81 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=75.8
Q ss_pred CCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCC
Q 046577 444 PNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRAD 523 (878)
Q Consensus 444 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~ 523 (878)
..++.|++++|.++.+....+ ...+|++|.+.+++.++.+ |...++.+++|++|+++++. ++.++..
T Consensus 154 ~~l~~L~L~~N~i~~i~~~~f-------~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~N~-l~~lp~~---- 220 (350)
T 4ay9_X 154 FESVILWLNKNGIQEIHNSAF-------NGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRTR-IHSLPSY---- 220 (350)
T ss_dssp SSCEEEECCSSCCCEECTTSS-------TTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTTSC-CCCCCSS----
T ss_pred hhhhhhccccccccCCChhhc-------cccchhHHhhccCCcccCC-CHHHhccCcccchhhcCCCC-cCccChh----
Confidence 457778888887776633332 2467888999887888886 44557888999999999887 7666542
Q ss_pred CCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEEcc
Q 046577 524 QVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYR 567 (878)
Q Consensus 524 ~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 567 (878)
.|.+|+.|.+.++.+++.++. ...+++|+.+++.+
T Consensus 221 ------~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 ------GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp ------SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred ------hhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 477888888888888888764 34588888888865
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=6.5e-16 Score=161.46 Aligned_cols=175 Identities=24% Similarity=0.288 Sum_probs=152.8
Q ss_pred cccccceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccE
Q 046577 204 ESLKKCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKT 283 (878)
Q Consensus 204 ~~~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~ 283 (878)
..+++++.|++++|.+..++....+++|++|++++|.... ++. +.++++|++|++++|.+..+|. ++.+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~---~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD---IKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC---CGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC---Ccc--cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 3467899999999999888765589999999999998765 665 7899999999999999998775 899999999
Q ss_pred EEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcc
Q 046577 284 LCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSI 363 (878)
Q Consensus 284 L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 363 (878)
|++++|.+.+ + ..+..+++|++|++++|.++.+ ..++++++|++|++++|. +..++. ++.+++|++|++++|.+
T Consensus 117 L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcC
Confidence 9999999987 4 5789999999999999999988 579999999999999998 888876 89999999999999987
Q ss_pred hhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCc
Q 046577 364 EWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPA 403 (878)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (878)
. .+..+..+++|+.|++++|.....+.
T Consensus 191 ~-------------~l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 191 S-------------DLRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp C-------------BCGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred C-------------CChhhccCCCCCEEECcCCcccCCcc
Confidence 6 23568899999999999987655443
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=3.3e-16 Score=169.77 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=80.2
Q ss_pred hhhhCCCCCcEEEeeCCCCCCCc-----ccccccc-CccEEEecCccccccchhhhcCC-----CCCCEEEcCCCCCccc
Q 046577 250 NFFVGMRKLKVVDFTGMQLFSLP-----SSIDLLV-KLKTLCLDESILRDIDIAIIGKL-----ENLEILSFVRSDTVQL 318 (878)
Q Consensus 250 ~~~~~l~~Lr~L~L~~~~i~~lp-----~~~~~l~-~L~~L~l~~~~~~~~~p~~i~~L-----~~L~~L~l~~~~l~~l 318 (878)
.++...++|++|++++|.+...+ +.+..++ +|++|++++|.+....+..+..+ .+|++|++++|.++..
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 33444555777777777666553 4555666 67777777776666445555554 6677777777766643
Q ss_pred chh-----hcCC-CCccEEecCCCCCCCccCcchhc----C-CccccEEEcccCcchhHHhhhcccCCCCChhhhcCCC-
Q 046577 319 PKA-----LGQL-TKLRLLDLTDCFHLKVIAPNVIS----S-LIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLR- 386 (878)
Q Consensus 319 p~~-----i~~L-~~L~~L~l~~~~~l~~~~~~~~~----~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~- 386 (878)
+.. +..+ ++|++|++++|. ++..+...++ . .++|++|++++|.+... ........+...+
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------~~~~l~~~l~~~~~ 167 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK-------SSDELIQILAAIPA 167 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-------CHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-------HHHHHHHHHhcCCc
Confidence 322 3333 667777777776 5555543222 2 24677777777665511 0011223334444
Q ss_pred CCcEEEEEecCCC
Q 046577 387 WLTTLEIDVKNES 399 (878)
Q Consensus 387 ~L~~L~l~~~~~~ 399 (878)
+|++|++++|...
T Consensus 168 ~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 168 NVNSLNLRGNNLA 180 (362)
T ss_dssp TCCEEECTTSCGG
T ss_pred cccEeeecCCCCc
Confidence 6777777666543
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=3.8e-15 Score=152.29 Aligned_cols=168 Identities=18% Similarity=0.319 Sum_probs=145.3
Q ss_pred eeCCCCCCCCCccccccceEEEEeccccccCCCC-C-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCC
Q 046577 192 VENEDVWELPDKESLKKCYAISIRYCCIHELPNA-L-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLF 269 (878)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~ 269 (878)
..+..+..+|.. ....++.|++++|.+..++.. + .+++|++|++++|.... ++...|.++++|++|++++|.++
T Consensus 21 ~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 21 CQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT---LSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp CTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc---cCHhHhccCCcCCEEECCCCccc
Confidence 444455555542 346899999999999888764 3 79999999999998866 77777899999999999999999
Q ss_pred CCc-cccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccch-hhcCCCCccEEecCCCCCCCccCcchh
Q 046577 270 SLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPK-ALGQLTKLRLLDLTDCFHLKVIAPNVI 347 (878)
Q Consensus 270 ~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~~ 347 (878)
.+| ..++.+++|++|++++|.+.+..+..+..+.+|++|++++|+++.+|. .++.+++|++|++++|. +..++...+
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 175 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAF 175 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHH
Confidence 885 567899999999999999998555567999999999999999999887 58999999999999998 888888779
Q ss_pred cCCccccEEEcccCcch
Q 046577 348 SSLIRLEELYMCNCSIE 364 (878)
Q Consensus 348 ~~l~~L~~L~l~~~~~~ 364 (878)
.++++|++|++++|.+.
T Consensus 176 ~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 176 DRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCTTCCEEECCSCCBC
T ss_pred hCCCCCCEEEeeCCcee
Confidence 99999999999999876
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=4.6e-16 Score=164.70 Aligned_cols=217 Identities=12% Similarity=0.118 Sum_probs=131.5
Q ss_pred cceEEEEeccccc-----cCCCCCCCCCccEEEcCCCCCccccCcChhhh-hCCCCCcEEEeeCCCCCCC-c----cccc
Q 046577 208 KCYAISIRYCCIH-----ELPNALECPQLEFLCMSPEDSSLEVSIPENFF-VGMRKLKVVDFTGMQLFSL-P----SSID 276 (878)
Q Consensus 208 ~~~~L~l~~~~~~-----~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~-~~l~~Lr~L~L~~~~i~~l-p----~~~~ 276 (878)
+++++.+.++.+. .+.....+++|+.|++++|..... .|..++ ..+++|++|++++|.+... + ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGT--MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC--CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccc--hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3455666554432 122222345577777777766543 554433 6677777777777777642 2 2334
Q ss_pred cccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcc---cchh--hcCCCCccEEecCCCCCCCccCcc---hhc
Q 046577 277 LLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQ---LPKA--LGQLTKLRLLDLTDCFHLKVIAPN---VIS 348 (878)
Q Consensus 277 ~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~---lp~~--i~~L~~L~~L~l~~~~~l~~~~~~---~~~ 348 (878)
.+++|++|++++|.+.+..|..++.+++|++|++++|++.. ++.. ++++++|++|++++|. ++.++.. .++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHh
Confidence 57777777777777777555677777777777777776543 3222 3567777777777776 6554432 245
Q ss_pred CCccccEEEcccCcchhHHhhhcccCCCCChhhhcCC---CCCcEEEEEecCCCcCCchhhhcccccccccccCcccccc
Q 046577 349 SLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHL---RWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCS 425 (878)
Q Consensus 349 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~ 425 (878)
++++|++|++++|.+. ...+..+..+ ++|++|++++|.+..+|..+
T Consensus 222 ~l~~L~~L~Ls~N~l~-----------~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-------------------- 270 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLR-----------ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-------------------- 270 (310)
T ss_dssp HTCCCSSEECTTSCCC-----------CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--------------------
T ss_pred cCCCCCEEECCCCCCC-----------ccchhhHHhccCcCcCCEEECCCCCCCchhhhh--------------------
Confidence 6677777777777765 2222333333 57777777777766555442
Q ss_pred cccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEEeecc
Q 046577 426 SEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWR 483 (878)
Q Consensus 426 ~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~ 483 (878)
+++|++|++++|.++.+.. +. .+++|+.|++++
T Consensus 271 -----------------~~~L~~L~Ls~N~l~~~~~----~~----~l~~L~~L~L~~ 303 (310)
T 4glp_A 271 -----------------PAKLRVLDLSSNRLNRAPQ----PD----ELPEVDNLTLDG 303 (310)
T ss_dssp -----------------CSCCSCEECCSCCCCSCCC----TT----SCCCCSCEECSS
T ss_pred -----------------cCCCCEEECCCCcCCCCch----hh----hCCCccEEECcC
Confidence 3567777777776664311 12 256777777776
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=5.3e-16 Score=166.67 Aligned_cols=127 Identities=20% Similarity=0.138 Sum_probs=94.3
Q ss_pred CCCcEEEeeCCCCCCCccccccc--cCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcc--cchhhcCCCCccEE
Q 046577 256 RKLKVVDFTGMQLFSLPSSIDLL--VKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQ--LPKALGQLTKLRLL 331 (878)
Q Consensus 256 ~~Lr~L~L~~~~i~~lp~~~~~l--~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L 331 (878)
..++.++++++.+. |..+..+ .++++|++++|.+.+ .+..+..+.+|++|++++|.+.. +|..+.++++|++|
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECS-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccc-cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 45788999888776 5667777 889999999998888 45556788899999999988763 77778888999999
Q ss_pred ecCCCCCCCccCcchhcCCccccEEEcccC-cchhHHhhhcccCCCCChhhhcCCCCCcEEEEEec
Q 046577 332 DLTDCFHLKVIAPNVISSLIRLEELYMCNC-SIEWEVERANSKRSNASLDELMHLRWLTTLEIDVK 396 (878)
Q Consensus 332 ~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 396 (878)
++++|. +.......++++++|++|++++| .+... .....+..+++|++|++++|
T Consensus 124 ~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 124 SLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------ALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHH----------HHHHHHHHCTTCCEEECCCC
T ss_pred eCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHH----------HHHHHHhcCCCCCEEcCCCC
Confidence 999887 55333333788888999988888 34311 12334666778888888776
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=6e-17 Score=177.49 Aligned_cols=162 Identities=19% Similarity=0.155 Sum_probs=83.7
Q ss_pred CCCCccEEEcCCCCCccccCcCh---hhhhCCCCCcEEEeeCCCCCC----Ccccc-------ccccCccEEEecCcccc
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPE---NFFVGMRKLKVVDFTGMQLFS----LPSSI-------DLLVKLKTLCLDESILR 292 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~---~~~~~l~~Lr~L~L~~~~i~~----lp~~~-------~~l~~L~~L~l~~~~~~ 292 (878)
.+++|++|++++|..... .+. ..|.++++|++|+|++|.+.. +|..+ ..+++|++|++++|.+.
T Consensus 30 ~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTE--AARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HCSCCCEEECTTSEECHH--HHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred cCCCccEEECCCCCCCHH--HHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 455666666666654321 111 123456666666666654432 23333 45566666666666665
Q ss_pred c----cchhhhcCCCCCCEEEcCCCCCcc-----cchhhcCC---------CCccEEecCCCCCCC--ccCc--chhcCC
Q 046577 293 D----IDIAIIGKLENLEILSFVRSDTVQ-----LPKALGQL---------TKLRLLDLTDCFHLK--VIAP--NVISSL 350 (878)
Q Consensus 293 ~----~~p~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L---------~~L~~L~l~~~~~l~--~~~~--~~~~~l 350 (878)
. .+|..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|. +. .++. ..+..+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhC
Confidence 5 355566666666666666666542 22223333 666666666665 43 2221 124456
Q ss_pred ccccEEEcccCcchhHHhhhcccCCCCChh-hhcCCCCCcEEEEEecCC
Q 046577 351 IRLEELYMCNCSIEWEVERANSKRSNASLD-ELMHLRWLTTLEIDVKNE 398 (878)
Q Consensus 351 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~ 398 (878)
++|++|++++|.+...+. ..... .+..+++|+.|++++|.+
T Consensus 187 ~~L~~L~L~~n~l~~~g~-------~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGI-------EHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp TTCCEEECCSSCCCHHHH-------HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred CCcCEEECcCCCCCHhHH-------HHHHHHHhhcCCCccEEECcCCCC
Confidence 666666666665542111 00112 455566666666665543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=1.9e-15 Score=157.96 Aligned_cols=171 Identities=22% Similarity=0.239 Sum_probs=142.3
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+++|+.|++++|.... ++. +..+++|++|++++|.+..++. ++.+++|++|++++|.+.. +| .+..+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~---~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS---VQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCCC---CTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hcCcccEEEccCCCccc---Chh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 56789999999988754 654 6889999999999999998877 8999999999999999986 44 499999999
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCC
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLR 386 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (878)
+|++++|.++.++ .+..+++|++|++++|. +..++. ++++++|++|++++|.+. ....+..++
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~-------------~~~~l~~l~ 178 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS-------------DIVPLAGLT 178 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC-------------CCGGGTTCT
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccc-------------cchhhcCCC
Confidence 9999999998874 68899999999999998 887743 899999999999999876 122388899
Q ss_pred CCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeecccccee
Q 046577 387 WLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDK 458 (878)
Q Consensus 387 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~ 458 (878)
+|+.|++++|.+..++.. ..+++|+.|++++|.+..
T Consensus 179 ~L~~L~L~~N~i~~l~~l------------------------------------~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 179 KLQNLYLSKNHISDLRAL------------------------------------AGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCCEEECCSSCCCBCGGG------------------------------------TTCTTCSEEEEEEEEEEC
T ss_pred ccCEEECCCCcCCCChhh------------------------------------ccCCCCCEEECcCCcccC
Confidence 999999998876544321 157889999999887663
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.61 E-value=5.1e-15 Score=148.71 Aligned_cols=151 Identities=22% Similarity=0.292 Sum_probs=128.5
Q ss_pred ceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEec
Q 046577 209 CYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLD 287 (878)
Q Consensus 209 ~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~ 287 (878)
...++.+++.+..+|..+. ++|++|++++|.+.. ++...|.++++|++|+|++|.+..+| ..+..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~---~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITK---LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCc---cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4467777778888887654 889999999998766 65666889999999999999999886 456889999999999
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcch
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
+|.+.+..+..+..+.+|++|++++|+++.+|..+.++++|++|++++|. +..++...+..+++|+.|++.+|.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999855556789999999999999999999999999999999999997 88888777888999999999888765
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.60 E-value=1.8e-16 Score=173.65 Aligned_cols=143 Identities=16% Similarity=0.068 Sum_probs=99.4
Q ss_pred cChhhhhCCCCCcEEEeeCCCCCC-----CccccccccCccEEEecCcccc---ccchhhh-------cCCCCCCEEEcC
Q 046577 247 IPENFFVGMRKLKVVDFTGMQLFS-----LPSSIDLLVKLKTLCLDESILR---DIDIAII-------GKLENLEILSFV 311 (878)
Q Consensus 247 l~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~---~~~p~~i-------~~L~~L~~L~l~ 311 (878)
++.. +..+++|++|+|++|.+.. ++..+..+++|++|++++|.+. +.+|..+ ..+++|++|+++
T Consensus 24 l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4444 5778889999999998873 4455778889999999886443 3345544 688899999999
Q ss_pred CCCCcc-----cchhhcCCCCccEEecCCCCCCCccCcchhc----CC---------ccccEEEcccCcchhHHhhhccc
Q 046577 312 RSDTVQ-----LPKALGQLTKLRLLDLTDCFHLKVIAPNVIS----SL---------IRLEELYMCNCSIEWEVERANSK 373 (878)
Q Consensus 312 ~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~----~l---------~~L~~L~l~~~~~~~~~~~~~~~ 373 (878)
+|.+.. +|..+.++++|++|++++|. +.......+. .+ ++|++|++++|.+.....
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~----- 176 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM----- 176 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH-----
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH-----
Confidence 988775 67778888899999998887 5433222233 33 788888888887651111
Q ss_pred CCCCChhhhcCCCCCcEEEEEecCC
Q 046577 374 RSNASLDELMHLRWLTTLEIDVKNE 398 (878)
Q Consensus 374 ~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (878)
......+..+++|++|++++|.+
T Consensus 177 --~~l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 177 --KEWAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp --HHHHHHHHHCTTCCEEECCSSCC
T ss_pred --HHHHHHHHhCCCcCEEECcCCCC
Confidence 11124566777888888887754
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=6.3e-15 Score=144.41 Aligned_cols=151 Identities=15% Similarity=0.176 Sum_probs=110.2
Q ss_pred ccccceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCC-CccccccccCccE
Q 046577 205 SLKKCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFS-LPSSIDLLVKLKT 283 (878)
Q Consensus 205 ~~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~l~~L~~ 283 (878)
.++++++|+++++.+..++....+++|++|++++|.... ++ .+..+++|++|++++|.+.. .|..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~---~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN---YN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC---CG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc---ch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 456788888888888777743477788888888775432 32 25778888888888887774 5667777888888
Q ss_pred EEecCccccccchhhhcCCCCCCEEEcCCCC-CcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCc
Q 046577 284 LCLDESILRDIDIAIIGKLENLEILSFVRSD-TVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCS 362 (878)
Q Consensus 284 L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 362 (878)
|++++|.+....|..++.+++|++|++++|. ++.+| .+..+++|++|++++|. +..++. +..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcc
Confidence 8888888776667778888888888888886 77776 57778888888888877 666662 7777788888877776
Q ss_pred ch
Q 046577 363 IE 364 (878)
Q Consensus 363 ~~ 364 (878)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 53
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=3.6e-15 Score=147.70 Aligned_cols=164 Identities=20% Similarity=0.291 Sum_probs=130.0
Q ss_pred EEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCcc-ccccccCccEEEecCc
Q 046577 211 AISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPS-SIDLLVKLKTLCLDES 289 (878)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~ 289 (878)
.+..+++.+..+|... .++|++|++++|.... ++..+|.++++|++|++++|+++.+|. .+..+++|++|++++|
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSLKS---LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCccCc---CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4555566666676554 4588999999988764 777778889999999999999988765 4688899999999999
Q ss_pred cccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHh
Q 046577 290 ILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVE 368 (878)
Q Consensus 290 ~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 368 (878)
.+.+..+..+.++++|++|++++|.++.+|.. ++++++|++|++++|. ++.++...+.++++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee----
Confidence 98884455678899999999999998888765 7889999999999987 88888776788999999999888654
Q ss_pred hhcccCCCCChhhhcCCCCCcEEEEEecC
Q 046577 369 RANSKRSNASLDELMHLRWLTTLEIDVKN 397 (878)
Q Consensus 369 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 397 (878)
+.+++|+.|++..+.
T Consensus 162 --------------~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 162 --------------CTCPGIRYLSEWINK 176 (208)
T ss_dssp --------------CCTTTTHHHHHHHHH
T ss_pred --------------cCCCCHHHHHHHHHh
Confidence 234567777666554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=6e-15 Score=147.09 Aligned_cols=149 Identities=22% Similarity=0.320 Sum_probs=105.0
Q ss_pred EEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCc
Q 046577 211 AISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDES 289 (878)
Q Consensus 211 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~ 289 (878)
.++.+++.++.+|..+. ++++.|++++|.+.. ++...|..+++|++|+|++|.+..+ |..|..+++|++|++++|
T Consensus 15 ~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~---i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKV---IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCSSCCSSCC-TTCCEEECCSSCCCE---ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcCcCCCccC-cCCCEEECCCCcCCC---cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45556666667766543 577777777777654 6666677777777777777777755 667777777777777777
Q ss_pred cccccchhhhcCCCCCCEEEcCCCCCccc-chhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcch
Q 046577 290 ILRDIDIAIIGKLENLEILSFVRSDTVQL-PKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 290 ~~~~~~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
.+....+..|.++.+|++|++++|.++.+ |..+..+++|++|++++|. ++.++.+.+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77763334467777777777777777766 3457777777777777776 77777665777777777777777654
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=6.3e-16 Score=167.52 Aligned_cols=161 Identities=11% Similarity=0.117 Sum_probs=115.6
Q ss_pred CCCccEEEcCCCCCccccCcCh----hhhhCCC-CCcEEEeeCCCCCCC-ccccccc-----cCccEEEecCccccccch
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPE----NFFVGMR-KLKVVDFTGMQLFSL-PSSIDLL-----VKLKTLCLDESILRDIDI 296 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~----~~~~~l~-~Lr~L~L~~~~i~~l-p~~~~~l-----~~L~~L~l~~~~~~~~~p 296 (878)
.++|++|++++|.... .+. ..|.+++ +|++|+|++|.+... +..+..+ ++|++|++++|.+....+
T Consensus 21 ~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYS---ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp CTTCCEEECTTSCGGG---SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CCCceEEEccCCCCCh---HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 3459999999988765 555 5678888 899999999998855 5666665 899999999999887555
Q ss_pred hhh----cCC-CCCCEEEcCCCCCcccchh-----hcC-CCCccEEecCCCCCCCcc-----CcchhcCCc-cccEEEcc
Q 046577 297 AII----GKL-ENLEILSFVRSDTVQLPKA-----LGQ-LTKLRLLDLTDCFHLKVI-----APNVISSLI-RLEELYMC 359 (878)
Q Consensus 297 ~~i----~~L-~~L~~L~l~~~~l~~lp~~-----i~~-L~~L~~L~l~~~~~l~~~-----~~~~~~~l~-~L~~L~l~ 359 (878)
..+ ..+ ++|++|++++|.++..+.. +.. .++|++|++++|. ++.. +.. +..++ +|++|+++
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls 175 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLR 175 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECT
T ss_pred HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeec
Confidence 544 444 8999999999988866542 334 3689999999987 6633 222 45555 89999999
Q ss_pred cCcchhHHhhhcccCCCCChhhhcCC-CCCcEEEEEecCCCc
Q 046577 360 NCSIEWEVERANSKRSNASLDELMHL-RWLTTLEIDVKNESM 400 (878)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~ 400 (878)
+|.+.... .......+... ++|++|++++|.+..
T Consensus 176 ~n~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 176 GNNLASKN-------CAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp TSCGGGSC-------HHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred CCCCchhh-------HHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 99876111 01112344555 589999998887543
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=6.4e-15 Score=144.35 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=131.3
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+++|+.|++++|.... +| . +..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..++.+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~---l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVTD---LT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCSC---CT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCccC---hH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 56789999999998764 77 3 689999999999999887766 688999999999999999977789999999999
Q ss_pred EEEcCCCCCcc-cchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCC
Q 046577 307 ILSFVRSDTVQ-LPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHL 385 (878)
Q Consensus 307 ~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 385 (878)
+|++++|.+.. .|..++++++|++|++++|..++.++. ++++++|++|++++|.+. .+..+..+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~-------------~~~~l~~l 180 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH-------------DYRGIEDF 180 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC-------------CCTTGGGC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc-------------ChHHhccC
Confidence 99999999984 677899999999999999976788873 899999999999999876 23378889
Q ss_pred CCCcEEEEEecCCC
Q 046577 386 RWLTTLEIDVKNES 399 (878)
Q Consensus 386 ~~L~~L~l~~~~~~ 399 (878)
++|+.|++++|.+.
T Consensus 181 ~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 181 PKLNQLYAFSQTIG 194 (197)
T ss_dssp SSCCEEEECBC---
T ss_pred CCCCEEEeeCcccC
Confidence 99999999988754
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=9.3e-15 Score=145.74 Aligned_cols=151 Identities=15% Similarity=0.255 Sum_probs=111.0
Q ss_pred eEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEecC
Q 046577 210 YAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDE 288 (878)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~ 288 (878)
+.++++++.+..+|..+ ...++.|++++|.+... .+..+|.++++|++|++++|.++.++ ..|+.+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~--~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVL--EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEE--CCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCcc--CchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 36777777777777654 34567888888876552 24455778888888888888887664 3677888888888888
Q ss_pred ccccccchhhhcCCCCCCEEEcCCCCCccc-chhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcch
Q 046577 289 SILRDIDIAIIGKLENLEILSFVRSDTVQL-PKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 289 ~~~~~~~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
|.+.+..+..|.++++|++|++++|+++.+ |..+..+++|++|++++|. ++.+++..+..+++|++|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888775556678888888888888887766 4557778888888888877 77775555777888888888777654
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=6.9e-15 Score=168.60 Aligned_cols=175 Identities=24% Similarity=0.289 Sum_probs=151.0
Q ss_pred cccccceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccE
Q 046577 204 ESLKKCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKT 283 (878)
Q Consensus 204 ~~~~~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~ 283 (878)
..+..++.|+++++.+..++....+++|+.|++++|.+.. ++. |..+++|++|+|++|.+..+| .++.+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~---~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD---IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC---CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC---Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 4567788899999999888765589999999999998765 565 789999999999999999887 6899999999
Q ss_pred EEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcc
Q 046577 284 LCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSI 363 (878)
Q Consensus 284 L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 363 (878)
|+|++|.+.. + +.+..+++|+.|++++|.+..+ ..++.+++|++|++++|. +..+++ +..+++|++|++++|.+
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCC
Confidence 9999999987 4 5689999999999999999988 568999999999999998 887776 89999999999999987
Q ss_pred hhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCc
Q 046577 364 EWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPA 403 (878)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (878)
. .+..+..+++|+.|++++|.....|.
T Consensus 188 ~-------------~l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 188 S-------------DLRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp C-------------BCGGGTTCTTCSEEECCSEEEECCCC
T ss_pred C-------------CChHHccCCCCCEEEccCCcCcCCcc
Confidence 6 23578899999999999887655543
No 108
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=167.56 Aligned_cols=163 Identities=16% Similarity=0.301 Sum_probs=126.3
Q ss_pred ccEEc---cCCChHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCCchhHHHHHHHhcCCCCCC
Q 046577 5 DNFLI---NNLNEEEAGRLFKMMAGDDVENRELKSTAIDVARACGGLPIALTTVAKALRGKSLHEWKNSLRELRTPSMVN 81 (878)
Q Consensus 5 ~~~~l---~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k~~~~W~~~l~~l~~~~~~~ 81 (878)
..|++ ++|+.+||++||.+.++. ......+.+++|+++|+|+||||+++|+.|+.+. .+|+.+++.+.......
T Consensus 276 ~~~~v~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~ 352 (591)
T 1z6t_A 276 PKYVVPVESSLGKEKGLEILSLFVNM--KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKR 352 (591)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHTS--CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCC
T ss_pred CceEeecCCCCCHHHHHHHHHHHhCC--CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHH
Confidence 45666 489999999999999963 1234456899999999999999999999998763 36999999887652111
Q ss_pred c----CCchhhHHHHHHHHHhcCCCchhHHHHHHhccCCCC--CChhHHHHHHhhcccccCcchHHHHHHHHHHHHHHHH
Q 046577 82 F----EGVSAETYSSIELSFKYLKGGQLKELFQLCSLMGNS--IPTLKLLKYSIGLGIFQGVNKMEDARNKLYALVHELR 155 (878)
Q Consensus 82 ~----~~~~~~i~~~L~lSy~~L~~~~lk~cFly~~~fp~~--i~~~~li~~w~~~g~~~~~~~~e~~~~~~~~~l~~L~ 155 (878)
. ......+..++..||+.||++ .|.||+|+|+||++ |..+.+...|.+. .+++ ..++++|+
T Consensus 353 ~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------~~~~----~~~l~~L~ 419 (591)
T 1z6t_A 353 IRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDME--------TEEV----EDILQEFV 419 (591)
T ss_dssp SSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCC--------HHHH----HHHHHHHH
T ss_pred hhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccC--------HHHH----HHHHHHHH
Confidence 1 112346889999999999998 79999999999985 6678888899643 1222 23499999
Q ss_pred hcccccccC--CCCcEEccHHHHHHHHHHh
Q 046577 156 DSCLLLEGD--SNKLISMHDVVRDVARSIA 183 (878)
Q Consensus 156 ~r~l~~~~~--~~~~~~mHdl~~~l~~~~~ 183 (878)
+++|++... ....|+|||++|+++....
T Consensus 420 ~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 420 NKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred hCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 999997432 2347999999999998874
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=3.8e-15 Score=170.72 Aligned_cols=150 Identities=21% Similarity=0.240 Sum_probs=121.8
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+++|+.|++++|.... ++. |..+++|+.|+|++|.+..+|. ++.+++|++|+|++|.+.. +| .+..+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~---l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS---VQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCCC---CTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred cCCCCCEEECcCCCCCC---ChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 56788888888887654 653 6889999999999999888876 8889999999999998886 44 788899999
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCC
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLR 386 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (878)
+|++++|.+..+| .+..+++|+.|++++|. +..++. ++.+++|+.|++++|.+. ... .+..++
T Consensus 113 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~------------~~~-~l~~l~ 175 (605)
T 1m9s_A 113 SLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQIS------------DIV-PLAGLT 175 (605)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCC------------CCG-GGTTCT
T ss_pred EEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCC------------Cch-hhccCC
Confidence 9999999888874 58889999999999987 777743 888999999999988775 122 278888
Q ss_pred CCcEEEEEecCCCcC
Q 046577 387 WLTTLEIDVKNESML 401 (878)
Q Consensus 387 ~L~~L~l~~~~~~~~ 401 (878)
+|+.|++++|.+..+
T Consensus 176 ~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 176 KLQNLYLSKNHISDL 190 (605)
T ss_dssp TCCEEECCSSCCCBC
T ss_pred CCCEEECcCCCCCCC
Confidence 999999988876544
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=8.5e-15 Score=154.93 Aligned_cols=198 Identities=14% Similarity=0.065 Sum_probs=153.5
Q ss_pred ccceEEEEeccccccC-CCC---CCCCCccEEEcCCCCCccccCcC---hhhhhCCCCCcEEEeeCCCCCCC-ccccccc
Q 046577 207 KKCYAISIRYCCIHEL-PNA---LECPQLEFLCMSPEDSSLEVSIP---ENFFVGMRKLKVVDFTGMQLFSL-PSSIDLL 278 (878)
Q Consensus 207 ~~~~~L~l~~~~~~~l-~~~---~~~~~Lr~L~l~~~~~~~~~~l~---~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l 278 (878)
.++++|++++|.+... +.. ..+++|++|++++|..... .+ ...+..+++|++|++++|.+..+ |..++.+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG--RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST--TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch--hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 4588999999988754 433 4688999999999987642 33 23345799999999999999876 4788999
Q ss_pred cCccEEEecCcccccc--c--hhhhcCCCCCCEEEcCCCCCcccchh----hcCCCCccEEecCCCCCCCcc-CcchhcC
Q 046577 279 VKLKTLCLDESILRDI--D--IAIIGKLENLEILSFVRSDTVQLPKA----LGQLTKLRLLDLTDCFHLKVI-APNVISS 349 (878)
Q Consensus 279 ~~L~~L~l~~~~~~~~--~--p~~i~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~~-~~~~~~~ 349 (878)
++|++|++++|.+.+. + +..++.+++|++|++++|+++.+|.. ++.+++|++|++++|. +..+ |.. ++.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~ 246 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APR 246 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHh
Confidence 9999999999987641 2 23347899999999999999877653 5788999999999998 7766 554 666
Q ss_pred C---ccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCccccccc
Q 046577 350 L---IRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSS 426 (878)
Q Consensus 350 l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~ 426 (878)
+ ++|++|++++|.+. ..+..+. ++|+.|++++|.+..+|...
T Consensus 247 ~~~~~~L~~L~Ls~N~l~------------~lp~~~~--~~L~~L~Ls~N~l~~~~~~~--------------------- 291 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLE------------QVPKGLP--AKLRVLDLSSNRLNRAPQPD--------------------- 291 (310)
T ss_dssp CCCCTTCCCEECCSSCCC------------SCCSCCC--SCCSCEECCSCCCCSCCCTT---------------------
T ss_pred ccCcCcCCEEECCCCCCC------------chhhhhc--CCCCEEECCCCcCCCCchhh---------------------
Confidence 6 69999999999876 2233332 79999999998876544311
Q ss_pred ccccccccccccccccCCCcceeeecccccee
Q 046577 427 EITLDTSTLLFNEKVALPNLEALEISEINVDK 458 (878)
Q Consensus 427 ~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~ 458 (878)
.+++|+.|++++|.+++
T Consensus 292 ---------------~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 292 ---------------ELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ---------------SCCCCSCEECSSTTTSC
T ss_pred ---------------hCCCccEEECcCCCCCC
Confidence 57888999999887654
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=3e-15 Score=153.73 Aligned_cols=170 Identities=17% Similarity=0.179 Sum_probs=130.4
Q ss_pred cceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEec
Q 046577 208 KCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLD 287 (878)
Q Consensus 208 ~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~ 287 (878)
++..+.+..+.+..++....+++|++|++++|.... ++. +..+++|++|++++|.+..+|. ++.+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~---l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS---LAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC---CTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc---chH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 344444455555555533367788888888887654 662 6788899999999998888877 8888999999999
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHH
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEV 367 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 367 (878)
+|.+.+ +|.... .+|++|++++|.++.+| .++++++|++|++++|. ++.++. ++.+++|++|++++|.+.
T Consensus 94 ~N~l~~-l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~--- 163 (263)
T 1xeu_A 94 RNRLKN-LNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT--- 163 (263)
T ss_dssp SSCCSC-CTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC---
T ss_pred CCccCC-cCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc---
Confidence 998887 554333 88999999999888875 58889999999999988 888763 888999999999988876
Q ss_pred hhhcccCCCCChhhhcCCCCCcEEEEEecCCCcCCc
Q 046577 368 ERANSKRSNASLDELMHLRWLTTLEIDVKNESMLPA 403 (878)
Q Consensus 368 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 403 (878)
....+..+++|+.|++++|.....|.
T Consensus 164 ----------~~~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 164 ----------NTGGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ----------BCTTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ----------chHHhccCCCCCEEeCCCCcccCCcc
Confidence 12567788899999999887655443
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=4.6e-14 Score=159.81 Aligned_cols=160 Identities=19% Similarity=0.205 Sum_probs=124.3
Q ss_pred cceEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEec
Q 046577 208 KCYAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLD 287 (878)
Q Consensus 208 ~~~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~ 287 (878)
+++.|++++|.+..+|..+ .++|++|++++|.+.. +| ..+++|++|++++|.++.+|. ++. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~---ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALIS---LP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSC---CC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcc---cc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 5778888888888887765 3789999999888764 77 347889999999998888887 665 89999999
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHH
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEV 367 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 367 (878)
+|.+.+ +|. .+++|++|++++|.++.+|. .+++|++|++++|. ++.+|. +. ++|+.|++++|.+.
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~--- 193 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE--- 193 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS---
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC---
Confidence 998888 776 67889999999998888886 57889999999887 777887 55 88999999888765
Q ss_pred hhhcccCCCCChhhhcCCCCC-------cEEEEEecCCCcCCchh
Q 046577 368 ERANSKRSNASLDELMHLRWL-------TTLEIDVKNESMLPAGF 405 (878)
Q Consensus 368 ~~~~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~~ 405 (878)
..+. +.. +| +.|++++|.+..+|..+
T Consensus 194 ---------~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 194 ---------SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp ---------SCCC-CC----------CCEEEECCSSCCCCCCGGG
T ss_pred ---------chhh-HHH--hhhcccccceEEecCCCcceecCHHH
Confidence 1122 322 55 88888888877776643
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=2.9e-14 Score=142.12 Aligned_cols=150 Identities=16% Similarity=0.240 Sum_probs=130.2
Q ss_pred cEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCcc-ccccccCccEEEecCccccccchhhhcCCCCCCEEEc
Q 046577 232 EFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPS-SIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSF 310 (878)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l 310 (878)
+.++++++.... +|..+ .+.|+.|++++|.++.+|. .|..+++|++|++++|.+.+..|..|.++.+|++|++
T Consensus 14 ~~v~c~~~~l~~---iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGLTE---IPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCCSS---CCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCcCc---CCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 577888877655 88764 3789999999999998754 7899999999999999999977899999999999999
Q ss_pred CCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCc
Q 046577 311 VRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLT 389 (878)
Q Consensus 311 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 389 (878)
++|.++.+|.. +..+++|++|++++|. +..+++..+.++++|++|++++|.+. ......+..+++|+
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQ-----------TIAKGTFSPLRAIQ 155 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCC
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCC-----------EECHHHHhCCCCCC
Confidence 99999999877 6889999999999998 88887777999999999999999886 33345678899999
Q ss_pred EEEEEecCCC
Q 046577 390 TLEIDVKNES 399 (878)
Q Consensus 390 ~L~l~~~~~~ 399 (878)
.|++++|...
T Consensus 156 ~L~L~~N~~~ 165 (220)
T 2v9t_B 156 TMHLAQNPFI 165 (220)
T ss_dssp EEECCSSCEE
T ss_pred EEEeCCCCcC
Confidence 9999988753
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=2.1e-14 Score=155.33 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=121.1
Q ss_pred eEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhh-CCCCCcEEEeeCCCCCCCc-cccccccCccEEEec
Q 046577 210 YAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFV-GMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLD 287 (878)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~ 287 (878)
+.++.+++.+..+|..+. +.++.|++++|.+.. ++...|. ++++|++|+|++|.+..++ ..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~---l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSR---LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCE---ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCCCCCCc---cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 456677777777776542 457788888887655 6666666 7888888888888887664 467778888888888
Q ss_pred CccccccchhhhcCCCCCCEEEcCCCCCccc-chhhcCCCCccEEecCCCCCCCccCcchh---cCCccccEEEcccCcc
Q 046577 288 ESILRDIDIAIIGKLENLEILSFVRSDTVQL-PKALGQLTKLRLLDLTDCFHLKVIAPNVI---SSLIRLEELYMCNCSI 363 (878)
Q Consensus 288 ~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~~---~~l~~L~~L~l~~~~~ 363 (878)
+|.+....+..|.++.+|++|++++|.+..+ |..+..+++|++|++++|. +..+|...+ ..+++|++|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 8887775555677888888888888887766 4457778888888888877 777777644 5677788888877776
Q ss_pred hhHHhhhcccCCCCChhhhcCCCC--CcEEEEEecCC
Q 046577 364 EWEVERANSKRSNASLDELMHLRW--LTTLEIDVKNE 398 (878)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~ 398 (878)
. ......+..++. ++.|++++|..
T Consensus 176 ~-----------~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 K-----------KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp C-----------CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred C-----------ccCHHHhhhccHhhcceEEecCCCc
Confidence 5 223345555554 35677766653
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=6.4e-15 Score=151.30 Aligned_cols=170 Identities=17% Similarity=0.142 Sum_probs=139.2
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.+.++..+.+..+.... ++. +..+++|++|++++|.+..+| .++.+++|++|++++|.+.+ ++. +.++++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~---~~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD---LVS--QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTS---EEC--HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccc---ccc--hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCC
Confidence 45567777777776654 552 678999999999999999998 68999999999999999998 665 99999999
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCC
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLR 386 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (878)
+|++++|+++.+|.... ++|++|++++|. ++.++. ++++++|++|++++|.+. .+..++.++
T Consensus 89 ~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~-------------~~~~l~~l~ 150 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLK-------------SIVMLGFLS 150 (263)
T ss_dssp EEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCC-------------BCGGGGGCT
T ss_pred EEECCCCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCC-------------CChHHccCC
Confidence 99999999998876433 999999999998 888764 899999999999999876 234688899
Q ss_pred CCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeecccccee
Q 046577 387 WLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDK 458 (878)
Q Consensus 387 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~ 458 (878)
+|+.|++++|.+...+. + ..+++|+.|++++|.+..
T Consensus 151 ~L~~L~L~~N~i~~~~~---------------------------------l---~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 151 KLEVLDLHGNEITNTGG---------------------------------L---TRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TCCEEECTTSCCCBCTT---------------------------------S---TTCCCCCEEEEEEEEEEC
T ss_pred CCCEEECCCCcCcchHH---------------------------------h---ccCCCCCEEeCCCCcccC
Confidence 99999999887654311 1 157889999999886653
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.53 E-value=5.2e-14 Score=159.37 Aligned_cols=139 Identities=22% Similarity=0.250 Sum_probs=102.4
Q ss_pred CCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEE
Q 046577 229 PQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEIL 308 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 308 (878)
.++++|++++|.... +|..+ +++|++|+|++|.++.+| +.+++|++|++++|.+.+ +|. +.+ +|++|
T Consensus 59 ~~L~~L~Ls~n~L~~---lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS---LPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECCSSCCSC---CCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEE
T ss_pred CCccEEEeCCCCCCc---cCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEE
Confidence 378888888887654 77665 367888888888888888 456788888888888887 776 655 88888
Q ss_pred EcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCC
Q 046577 309 SFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWL 388 (878)
Q Consensus 309 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (878)
++++|.++.+|. .+++|++|++++|. ++.+|. .+++|++|++++|.+. ..+. +. ++|
T Consensus 126 ~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~------------~lp~-l~--~~L 182 (571)
T 3cvr_A 126 DVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLT------------FLPE-LP--ESL 182 (571)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCS------------CCCC-CC--TTC
T ss_pred ECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCC------------Ccch-hh--CCC
Confidence 888888888876 67888888888887 777775 4677888888888765 1222 33 677
Q ss_pred cEEEEEecCCCcCCc
Q 046577 389 TTLEIDVKNESMLPA 403 (878)
Q Consensus 389 ~~L~l~~~~~~~~~~ 403 (878)
+.|++++|.+..+|.
T Consensus 183 ~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 183 EALDVSTNLLESLPA 197 (571)
T ss_dssp CEEECCSSCCSSCCC
T ss_pred CEEECcCCCCCchhh
Confidence 777777776665554
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=3.8e-14 Score=153.24 Aligned_cols=169 Identities=21% Similarity=0.272 Sum_probs=145.1
Q ss_pred EeeCCCCCCCCCccccccceEEEEeccccccCCCCC---CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCC
Q 046577 191 VVENEDVWELPDKESLKKCYAISIRYCCIHELPNAL---ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQ 267 (878)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~ 267 (878)
...+..+..+|. .....++.|++++|.+..++... .+++|++|++++|.+.. ++...|.++++|++|+|++|.
T Consensus 24 ~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~---i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 24 SCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF---ISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp ECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE---ECTTTTTTCTTCCEEECCSSC
T ss_pred EeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc---cChhhccCCCCCCEEECCCCc
Confidence 345555666664 34567899999999999887653 78999999999999876 787778999999999999999
Q ss_pred CCCCc-cccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhh----cCCCCccEEecCCCCCCCcc
Q 046577 268 LFSLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKAL----GQLTKLRLLDLTDCFHLKVI 342 (878)
Q Consensus 268 i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i----~~L~~L~~L~l~~~~~l~~~ 342 (878)
+..+| ..|..+.+|++|++++|.+....|..|.++.+|++|++++|.++.+|..+ .++++|++|++++|. +..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCcc
Confidence 99875 46899999999999999999977889999999999999999999999875 679999999999998 9999
Q ss_pred CcchhcCCcc--ccEEEcccCcch
Q 046577 343 APNVISSLIR--LEELYMCNCSIE 364 (878)
Q Consensus 343 ~~~~~~~l~~--L~~L~l~~~~~~ 364 (878)
|...+..++. |+.|++.+|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CHHHhhhccHhhcceEEecCCCcc
Confidence 9777888887 489999998875
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=6.6e-14 Score=139.55 Aligned_cols=150 Identities=13% Similarity=0.159 Sum_probs=129.6
Q ss_pred cEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc--cccccccCccEEEecCccccccchhhhcCCCCCCEEE
Q 046577 232 EFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP--SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILS 309 (878)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp--~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 309 (878)
++++++++.... +|..+ ...+++|++++|.++.++ ..|+.+++|++|++++|.+.+..+..|.++.+|++|+
T Consensus 14 ~~l~~s~n~l~~---iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLNK---IPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCSS---CCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEeEeCCCCccc---CccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence 588998888765 88754 456799999999999773 4589999999999999999996667899999999999
Q ss_pred cCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCC
Q 046577 310 FVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWL 388 (878)
Q Consensus 310 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (878)
+++|.++.+|.. ++.+++|++|++++|. +..+++..+.++++|++|++++|.+. ...+..+..+++|
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L 155 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHSL 155 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTTC
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCCC
Confidence 999999988765 8999999999999998 88886666999999999999999886 3346778889999
Q ss_pred cEEEEEecCCC
Q 046577 389 TTLEIDVKNES 399 (878)
Q Consensus 389 ~~L~l~~~~~~ 399 (878)
+.|++++|...
T Consensus 156 ~~L~L~~N~l~ 166 (220)
T 2v70_A 156 STLNLLANPFN 166 (220)
T ss_dssp CEEECCSCCEE
T ss_pred CEEEecCcCCc
Confidence 99999988754
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=6.7e-14 Score=138.54 Aligned_cols=159 Identities=21% Similarity=0.280 Sum_probs=133.0
Q ss_pred CCCCCCCCCccccccceEEEEeccccccCCCCC--CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC
Q 046577 194 NEDVWELPDKESLKKCYAISIRYCCIHELPNAL--ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL 271 (878)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~L~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l 271 (878)
+..+..++. ...+++++|++++|.+..++... .+++|++|++++|.... ++...|..+++|++|++++|.++.+
T Consensus 16 ~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~ 91 (208)
T 2o6s_A 16 SQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS---LPNGVFNKLTSLTYLNLSTNQLQSL 91 (208)
T ss_dssp SSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc---cChhhcCCCCCcCEEECCCCcCCcc
Confidence 333444443 23568999999999999888753 79999999999998865 8888889999999999999999988
Q ss_pred cc-ccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcC
Q 046577 272 PS-SIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISS 349 (878)
Q Consensus 272 p~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~ 349 (878)
|. .++.+++|++|++++|.+.+..+..+.++++|++|++++|.++.+|.. +.++++|++|++++|. + .+.
T Consensus 92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~-------~~~ 163 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W-------DCT 163 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B-------CCC
T ss_pred CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e-------ecC
Confidence 65 478999999999999999985555689999999999999999988876 7899999999999996 2 345
Q ss_pred CccccEEEcccCcch
Q 046577 350 LIRLEELYMCNCSIE 364 (878)
Q Consensus 350 l~~L~~L~l~~~~~~ 364 (878)
+++|+.|+++.+.+.
T Consensus 164 ~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 164 CPGIRYLSEWINKHS 178 (208)
T ss_dssp TTTTHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHhCC
Confidence 677888888777665
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=1.4e-13 Score=138.22 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=128.6
Q ss_pred ccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccchhhhcCCCCCCEEE
Q 046577 231 LEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILS 309 (878)
Q Consensus 231 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 309 (878)
-++++.+++.... +|..+ .++|++|+|++|.+..+ |..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 21 ~~~v~c~~~~l~~---ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCRSKRHAS---VPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTEEECTTSCCSS---CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEeEccCCCcCc---cCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 4567777776654 88754 48999999999999977 77899999999999999999884446679999999999
Q ss_pred cCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCC
Q 046577 310 FVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWL 388 (878)
Q Consensus 310 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 388 (878)
+++|.++.+|.. +..+++|++|++++|. +..+|.. +.++++|++|++++|.+. ......+..+++|
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L 161 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLK-----------SIPHGAFDRLSSL 161 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCC-----------CCCTTTTTTCTTC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCC-----------ccCHHHHhCCCCC
Confidence 999999988766 6899999999999998 8899987 899999999999999876 2233567889999
Q ss_pred cEEEEEecCCCc
Q 046577 389 TTLEIDVKNESM 400 (878)
Q Consensus 389 ~~L~l~~~~~~~ 400 (878)
+.|++++|....
T Consensus 162 ~~L~l~~N~~~c 173 (229)
T 3e6j_A 162 THAYLFGNPWDC 173 (229)
T ss_dssp CEEECTTSCBCT
T ss_pred CEEEeeCCCccC
Confidence 999999887543
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.9e-13 Score=130.15 Aligned_cols=133 Identities=21% Similarity=0.200 Sum_probs=68.9
Q ss_pred CCCcEEEeeCCCCC--CCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcc-cchhhcCCCCccEEe
Q 046577 256 RKLKVVDFTGMQLF--SLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQ-LPKALGQLTKLRLLD 332 (878)
Q Consensus 256 ~~Lr~L~L~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~ 332 (878)
++|++|++++|.+. .+|..+..+++|++|++++|.+.. + ..++.+++|++|++++|.+.. +|..++++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555555 455555555555555555555554 2 445555555555555555554 444444555555555
Q ss_pred cCCCCCCCccCc-chhcCCccccEEEcccCcchhHHhhhcccCCCCCh---hhhcCCCCCcEEEEEecCCCcCC
Q 046577 333 LTDCFHLKVIAP-NVISSLIRLEELYMCNCSIEWEVERANSKRSNASL---DELMHLRWLTTLEIDVKNESMLP 402 (878)
Q Consensus 333 l~~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~~ 402 (878)
+++|. ++.++. ..++.+++|++|++++|.+. .... ..+..+++|+.|++++|.....|
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-----------NLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-----------TSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-----------chHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 55554 444431 22555555555555555543 1111 24555556666666655544444
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=2e-13 Score=129.93 Aligned_cols=133 Identities=23% Similarity=0.198 Sum_probs=95.8
Q ss_pred CCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCE
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEI 307 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 307 (878)
.++|++|++++|.... +.+|.. |..+++|++|++++|.+..+ ..++.+++|++|++++|.+.+.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~-~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSND-GKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBT-TBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCCh-hhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3567777777776541 116654 56777888888888877776 66777788888888888777766666677888888
Q ss_pred EEcCCCCCcccc--hhhcCCCCccEEecCCCCCCCccCc---chhcCCccccEEEcccCcch
Q 046577 308 LSFVRSDTVQLP--KALGQLTKLRLLDLTDCFHLKVIAP---NVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 308 L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~~~---~~~~~l~~L~~L~l~~~~~~ 364 (878)
|++++|.++.+| ..++.+++|++|++++|. +..++. ..+..+++|++|++++|...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888888777765 567778888888888876 666665 34777888888887777653
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.43 E-value=2.1e-13 Score=126.92 Aligned_cols=126 Identities=22% Similarity=0.235 Sum_probs=71.7
Q ss_pred CCccEEEcCCCCCc-cccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCE
Q 046577 229 PQLEFLCMSPEDSS-LEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEI 307 (878)
Q Consensus 229 ~~Lr~L~l~~~~~~-~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 307 (878)
++++.|++++|... .. +|.. |..+++|++|++++|.+..+ ..++.+++|++|++++|.+.+.+|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~--~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGK--LEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTB--CCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhH--HHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 44555555555443 11 4442 35566666666666666555 45566666666666666665545555555666666
Q ss_pred EEcCCCCCcccc--hhhcCCCCccEEecCCCCCCCccCc---chhcCCccccEEEcc
Q 046577 308 LSFVRSDTVQLP--KALGQLTKLRLLDLTDCFHLKVIAP---NVISSLIRLEELYMC 359 (878)
Q Consensus 308 L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~~~~---~~~~~l~~L~~L~l~ 359 (878)
|++++|.++.+| ..++.+++|++|++++|. +..++. ..++.+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 666666666543 456666666666666665 555554 335556666665543
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.1e-12 Score=127.58 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=99.0
Q ss_pred cEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcC
Q 046577 232 EFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFV 311 (878)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~ 311 (878)
++++++++.... +|..+ .+.|++|++++|.++.+|..+..+++|++|++++|.+.+..+..|.++.+|++|+++
T Consensus 13 ~~l~~~~~~l~~---ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKV---LPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSS---CCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCc---CCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 456666666544 67654 357888888888888888888888888888888888888556678888888888888
Q ss_pred CCCCcccch-hhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcch
Q 046577 312 RSDTVQLPK-ALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 312 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
+|.++.+|. .+..+++|++|++++|. +..++.+.+..+++|+.|++++|.+.
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 888887765 48888888888888887 88888776788888888888887664
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=1e-12 Score=127.88 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=91.1
Q ss_pred cEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCcc--ccccccCccEEEecCccccccchhhhcCCCCCCEEE
Q 046577 232 EFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPS--SIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILS 309 (878)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 309 (878)
++++++++.... +|..++ .+|++|++++|.+..++. .++.+++|++|++++|.+.+..|..|+++.+|++|+
T Consensus 11 ~~l~~s~~~l~~---ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKE---IPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSS---CCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcCc---CccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 566666666543 666542 377788888887777754 377788888888888888775577788888888888
Q ss_pred cCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcch
Q 046577 310 FVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 310 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
+++|+++.++.. ++.+++|++|++++|. +..+++..++.+++|++|++++|.+.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 888887766544 7778888888888877 66665555777788888888777654
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=4.9e-13 Score=157.43 Aligned_cols=152 Identities=20% Similarity=0.214 Sum_probs=102.2
Q ss_pred cccceEEEEeccccccCCCCC-CCCCccEEE-----cCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCcccccccc
Q 046577 206 LKKCYAISIRYCCIHELPNAL-ECPQLEFLC-----MSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLV 279 (878)
Q Consensus 206 ~~~~~~L~l~~~~~~~l~~~~-~~~~Lr~L~-----l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~ 279 (878)
..+++++.+..+.+...+... ....|+.+. +..|... ++.+.|..++.|++|+|++|.+..+|..+..++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~----~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV----MPKDSKYDDQLWHALDLSNLQIFNISANIFKYD 247 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee----cChhhhccCCCCcEEECCCCCCCCCChhhcCCC
Confidence 356788888887777665443 333333333 3333322 556668999999999999999999998899999
Q ss_pred CccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcc
Q 046577 280 KLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMC 359 (878)
Q Consensus 280 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 359 (878)
+|++|+|++|.+.. +|..|++|.+|++|+|++|.++.+|..+++|++|++|++++|. ++.+|.. ++++++|++|+++
T Consensus 248 ~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCSC-CCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCcc-cChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCC
Confidence 99999999999996 9999999999999999999999999999999999999999997 8899988 9999999999999
Q ss_pred cCcch
Q 046577 360 NCSIE 364 (878)
Q Consensus 360 ~~~~~ 364 (878)
+|.+.
T Consensus 325 ~N~l~ 329 (727)
T 4b8c_D 325 GNPLE 329 (727)
T ss_dssp TSCCC
T ss_pred CCccC
Confidence 99876
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=3.1e-13 Score=129.62 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=91.6
Q ss_pred CCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchh-hhcCCC
Q 046577 225 ALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIA-IIGKLE 303 (878)
Q Consensus 225 ~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~i~~L~ 303 (878)
..++.+|+.|++++|.... +|. +....++|++|++++|.++.+ ..++.+++|++|++++|.+.+ +|. .++.++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~---i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 88 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV---IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICR-IGEGLDQALP 88 (176)
T ss_dssp EECTTSCEEEECTTSCCCS---CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCT
T ss_pred cCCcCCceEEEeeCCCCch---hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccc-cCcchhhcCC
Confidence 3456677777777776653 543 223333778888887777766 467777778888887777776 443 347777
Q ss_pred CCCEEEcCCCCCcccch--hhcCCCCccEEecCCCCCCCccCcc---hhcCCccccEEEcccCcch
Q 046577 304 NLEILSFVRSDTVQLPK--ALGQLTKLRLLDLTDCFHLKVIAPN---VISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 304 ~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~~---~~~~l~~L~~L~l~~~~~~ 364 (878)
+|++|++++|.++.+|. .++.+++|++|++++|. +..+|.. .++.+++|+.|+++.|...
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77888887777777776 67777777777777776 6666653 3667777777777766554
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=1.2e-12 Score=121.68 Aligned_cols=125 Identities=22% Similarity=0.275 Sum_probs=110.0
Q ss_pred cccceEEEEeccccc--cCCCCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCC-CccccccccCc
Q 046577 206 LKKCYAISIRYCCIH--ELPNAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFS-LPSSIDLLVKL 281 (878)
Q Consensus 206 ~~~~~~L~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~~l~~L 281 (878)
++++++|++++|.+. .++..+ .+++|++|++++|.... + ..|..+++|++|++++|.+.. +|..++.+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~---~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---I--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC---C--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC---c--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 467999999999998 788765 89999999999998764 5 447899999999999999997 88888889999
Q ss_pred cEEEecCcccccc-chhhhcCCCCCCEEEcCCCCCcccch----hhcCCCCccEEecCC
Q 046577 282 KTLCLDESILRDI-DIAIIGKLENLEILSFVRSDTVQLPK----ALGQLTKLRLLDLTD 335 (878)
Q Consensus 282 ~~L~l~~~~~~~~-~p~~i~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~l~~ 335 (878)
++|++++|.+.+. .+..++.+++|++|++++|.++.+|. .++.+++|++|++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999882 23889999999999999999998876 689999999999863
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=2e-12 Score=123.89 Aligned_cols=135 Identities=14% Similarity=0.183 Sum_probs=112.7
Q ss_pred hhCCCCCcEEEeeCCCCCCCcccccccc-CccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhh-cCCCCcc
Q 046577 252 FVGMRKLKVVDFTGMQLFSLPSSIDLLV-KLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKAL-GQLTKLR 329 (878)
Q Consensus 252 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i-~~L~~L~ 329 (878)
|.++.+|++|++++|.+..+|. +..+. +|++|++++|.+.+ + ..++.+++|++|++++|.++.+|..+ +.+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 5678999999999999999875 55555 99999999999998 4 78999999999999999999998765 9999999
Q ss_pred EEecCCCCCCCccCc-chhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCC
Q 046577 330 LLDLTDCFHLKVIAP-NVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNE 398 (878)
Q Consensus 330 ~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (878)
+|++++|. ++.+|. ..++.+++|++|++++|.+... .......+..+++|+.|+++.+..
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~--------~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNK--------KHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGS--------TTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCc--------HhHHHHHHHHCCccceeCCCcCCH
Confidence 99999998 888886 2388999999999999987610 000112478899999999988764
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=6.6e-12 Score=121.96 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=109.6
Q ss_pred eEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEecC
Q 046577 210 YAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDE 288 (878)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~ 288 (878)
+.++.+++.+..+|..+. ++|++|++++|.+.. +|. .|.++++|++|+|++|.++.++ ..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~-~~l~~L~L~~n~i~~---ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP-RDVTELYLDGNQFTL---VPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCCEEECCSSCCCS---CCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC-CCCCEEECCCCcCch---hHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 467778888888887653 689999999998875 885 5799999999999999999885 6799999999999999
Q ss_pred ccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCC
Q 046577 289 SILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCF 337 (878)
Q Consensus 289 ~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 337 (878)
|.+....|..|.++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 999996677899999999999999999999875 8899999999999987
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=3.3e-12 Score=124.22 Aligned_cols=127 Identities=25% Similarity=0.359 Sum_probs=111.4
Q ss_pred cEEEeeCCCCCCCccccccccCccEEEecCccccccchh-hhcCCCCCCEEEcCCCCCccc-chhhcCCCCccEEecCCC
Q 046577 259 KVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIA-IIGKLENLEILSFVRSDTVQL-PKALGQLTKLRLLDLTDC 336 (878)
Q Consensus 259 r~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~ 336 (878)
+++++++++++.+|..+.. +|++|++++|.+.+..+. .++.+++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999987754 899999999999983333 489999999999999999977 677999999999999999
Q ss_pred CCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCC
Q 046577 337 FHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNES 399 (878)
Q Consensus 337 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (878)
. ++.++...++++++|++|++++|.+. ...+..+..+++|++|++++|...
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQIS-----------CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCCC-----------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCC-----------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8 88888877899999999999999886 334567888999999999988754
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=7e-13 Score=156.12 Aligned_cols=132 Identities=22% Similarity=0.212 Sum_probs=112.9
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
.++.|++|++++|.... +|..+| ++++|++|+|++|.++.+|..|+.+++|++|+|++|.+.. +|..|++|.+|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~---l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~ 296 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFN---ISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296 (727)
T ss_dssp CCCCCCEEECTTSCCSC---CCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCS
T ss_pred cCCCCcEEECCCCCCCC---CChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCC
Confidence 78999999999998864 898875 8999999999999999999999999999999999999996 899999999999
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCcc-ccEEEcccCcch
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIR-LEELYMCNCSIE 364 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~-L~~L~l~~~~~~ 364 (878)
+|+|++|.++.+|.+|++|++|++|++++|. +...++..+..+.. +..|++.+|.+.
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc
Confidence 9999999999999999999999999999998 66555443544322 123455555544
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.29 E-value=2e-11 Score=117.12 Aligned_cols=108 Identities=23% Similarity=0.397 Sum_probs=64.5
Q ss_pred CCCcEEEeeCCCCCCCcc-ccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEec
Q 046577 256 RKLKVVDFTGMQLFSLPS-SIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDL 333 (878)
Q Consensus 256 ~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l 333 (878)
++|++|++++|+++.+|. .++.+++|++|++++|.+.+..+..++.+.+|++|++++|.++.+|.. ++++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 456666666666665543 345566666666666666653333456666666666666666655544 456666666666
Q ss_pred CCCCCCCccCcchhcCCccccEEEcccCcch
Q 046577 334 TDCFHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 334 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
++|. ++.+|...+..+++|++|++++|.+.
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 6665 56666554556666666666666543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.28 E-value=2.1e-11 Score=116.96 Aligned_cols=124 Identities=22% Similarity=0.303 Sum_probs=108.1
Q ss_pred eEEEEeccccccCCCCCCCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCcc-ccccccCccEEEecC
Q 046577 210 YAISIRYCCIHELPNALECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPS-SIDLLVKLKTLCLDE 288 (878)
Q Consensus 210 ~~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~l~~L~~L~l~~ 288 (878)
+.++++++.+..+|... .++|++|++++|.... ++...|.++++|++|++++|.++.+|. .++.+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQS---LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCC---CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCcccE---eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 46777778888888654 3799999999998765 888888999999999999999998865 468999999999999
Q ss_pred ccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCC
Q 046577 289 SILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCF 337 (878)
Q Consensus 289 ~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 337 (878)
|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 999985555689999999999999999999877 5889999999999997
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=2e-11 Score=139.16 Aligned_cols=125 Identities=18% Similarity=0.151 Sum_probs=107.7
Q ss_pred CCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCC
Q 046577 256 RKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTD 335 (878)
Q Consensus 256 ~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~ 335 (878)
..|++|++++|.++.+|. ++.+++|++|++++|.+.. +|..|+++++|++|++++|.++.+| .++++++|++|++++
T Consensus 441 ~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred cCceEEEecCCCCCCCcC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 369999999999999997 9999999999999999996 9999999999999999999999998 899999999999999
Q ss_pred CCCCCcc--CcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEE
Q 046577 336 CFHLKVI--APNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEI 393 (878)
Q Consensus 336 ~~~l~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 393 (878)
|. ++.+ |.. ++++++|+.|++++|.+.. .......-+..+++|+.|++
T Consensus 518 N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~--------~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NR-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQ--------EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SC-CCSSSTTGG-GGGCTTCCEEECTTSGGGG--------SSSCTTHHHHHCTTCSEEEC
T ss_pred CC-CCCCCCcHH-HhcCCCCCEEEecCCcCCC--------CccHHHHHHHHCcccCccCC
Confidence 98 8888 555 9999999999999998761 11122233445889998864
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=2.9e-11 Score=137.75 Aligned_cols=188 Identities=20% Similarity=0.225 Sum_probs=145.6
Q ss_pred ccceEEEEeccccccCCCCC-CCCCccEEEcCCCC-------------CccccCcChhhhhCCCCCcEEE-eeCCCCCCC
Q 046577 207 KKCYAISIRYCCIHELPNAL-ECPQLEFLCMSPED-------------SSLEVSIPENFFVGMRKLKVVD-FTGMQLFSL 271 (878)
Q Consensus 207 ~~~~~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~-------------~~~~~~l~~~~~~~l~~Lr~L~-L~~~~i~~l 271 (878)
+.+++|++++|.+..+|..+ .+++|+.|++++|. ... .++..++.+++|+.|+ ++.+.+..+
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~---~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL---YEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGG---GHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhccccc---CCHHHHHHHHhcccCcchhhcccchh
Confidence 34556667777777777665 67778888775542 111 3344568889999998 666654433
Q ss_pred cc------cccc--ccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccC
Q 046577 272 PS------SIDL--LVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIA 343 (878)
Q Consensus 272 p~------~~~~--l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~ 343 (878)
+. .+.. ...|++|++++|.+.+ +|. |+.+++|++|++++|.++.+|..++++++|++|++++|. ++.+|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc
Confidence 32 1111 1369999999999998 887 999999999999999999999999999999999999998 88888
Q ss_pred cchhcCCccccEEEcccCcchhHHhhhcccCCCCC-hhhhcCCCCCcEEEEEecCCCcCCchh-----hhcccccc
Q 046577 344 PNVISSLIRLEELYMCNCSIEWEVERANSKRSNAS-LDELMHLRWLTTLEIDVKNESMLPAGF-----LARKLERQ 413 (878)
Q Consensus 344 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~l 413 (878)
. ++++++|++|++++|.+. +.. +..++.+++|+.|++++|.....|... .+++|+.+
T Consensus 503 -~-l~~l~~L~~L~Ls~N~l~-----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 503 -G-VANLPRLQELLLCNNRLQ-----------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp -G-GTTCSSCCEEECCSSCCC-----------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred -c-cCCCCCCcEEECCCCCCC-----------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 4 999999999999999886 333 788999999999999999988776644 24555544
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=9.2e-13 Score=129.04 Aligned_cols=140 Identities=15% Similarity=0.240 Sum_probs=103.4
Q ss_pred cChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchhhcCCC
Q 046577 247 IPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKALGQLT 326 (878)
Q Consensus 247 l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~ 326 (878)
+|. .|..+++|++|++++|.+..+| .++.+++|++|++++|.+.. +|..+..+++|++|++++|.++.+| .+++++
T Consensus 40 l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~ 115 (198)
T 1ds9_A 40 MDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASLS-GIEKLV 115 (198)
T ss_dssp CHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCCHH-HHHHHH
T ss_pred hhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCcCC-ccccCC
Confidence 444 3688888999999888888888 78888889999998888886 7888888888899999888888876 588888
Q ss_pred CccEEecCCCCCCCccCc-chhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEE
Q 046577 327 KLRLLDLTDCFHLKVIAP-NVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLE 392 (878)
Q Consensus 327 ~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 392 (878)
+|++|++++|. +..++. ..+..+++|++|++++|.+....... ..........+..+++|+.|+
T Consensus 116 ~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~-~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 116 NLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN-NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT-TTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccc-cchHHHHHHHHHhCCCcEEEC
Confidence 89999998887 776654 34788888999998888765221000 000001123367788888876
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.18 E-value=8.3e-11 Score=111.94 Aligned_cols=103 Identities=26% Similarity=0.458 Sum_probs=69.2
Q ss_pred cEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCC
Q 046577 259 KVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCF 337 (878)
Q Consensus 259 r~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 337 (878)
+.++++++.+..+|..+. .+|++|++++|.+.+..|..|+++++|++|++++|+++.+|.. ++++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 566666666666666553 5677777777777664466667777777777777777766655 4667777777777766
Q ss_pred CCCccCcchhcCCccccEEEcccCcch
Q 046577 338 HLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 338 ~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
++.+|.+.+.++++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 66666655666777777777666554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=9.2e-11 Score=111.29 Aligned_cols=104 Identities=25% Similarity=0.393 Sum_probs=77.0
Q ss_pred CcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCC
Q 046577 258 LKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDC 336 (878)
Q Consensus 258 Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~ 336 (878)
.++++++++.++.+|..+. .+|++|++++|.+.+..|..|.++.+|++|++++|+++.+|.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4567777777777776553 6777788887777775566777788888888888877777665 577788888888877
Q ss_pred CCCCccCcchhcCCccccEEEcccCcch
Q 046577 337 FHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 337 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
. ++.++.+.+.++++|++|++++|.+.
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6 77777766777777777777777654
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=1.3e-12 Score=127.98 Aligned_cols=132 Identities=20% Similarity=0.194 Sum_probs=111.3
Q ss_pred ccccCCCCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccch
Q 046577 218 CIHELPNAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDI 296 (878)
Q Consensus 218 ~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p 296 (878)
.++.++..+ .+++|++|++++|.... +| .|.++++|++|++++|.+..+|..++.+++|++|++++|.+.+ +|
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~---l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~ 109 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK---IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS 109 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC---CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc---cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC
Confidence 344444444 68899999999997755 77 4789999999999999999999988889999999999999998 66
Q ss_pred hhhcCCCCCCEEEcCCCCCcccch--hhcCCCCccEEecCCCCCCCccCc----------chhcCCccccEEE
Q 046577 297 AIIGKLENLEILSFVRSDTVQLPK--ALGQLTKLRLLDLTDCFHLKVIAP----------NVISSLIRLEELY 357 (878)
Q Consensus 297 ~~i~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~----------~~~~~l~~L~~L~ 357 (878)
.+..+++|++|++++|.++.+|. .+..+++|++|++++|. +...++ ..+..+++|+.|+
T Consensus 110 -~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 -GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 78999999999999999998765 68999999999999997 544322 2378899999997
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=3.5e-10 Score=120.38 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=59.7
Q ss_pred ccceEEEEeccccc--cCCCCCCCCCccEEEcCCCCCccccCcChhhhhC--------CCCCcEEEeeCCCCCCCc-ccc
Q 046577 207 KKCYAISIRYCCIH--ELPNALECPQLEFLCMSPEDSSLEVSIPENFFVG--------MRKLKVVDFTGMQLFSLP-SSI 275 (878)
Q Consensus 207 ~~~~~L~l~~~~~~--~l~~~~~~~~Lr~L~l~~~~~~~~~~l~~~~~~~--------l~~Lr~L~L~~~~i~~lp-~~~ 275 (878)
.+++.|++++|.+. ..... ..+.++.+.+..+ . +|..+|.+ +.+|+.|+|.. .++.++ .+|
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~-~~~~~~~~~~~~~----~--I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAG-TYPNGKFYIYMAN----F--VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSS-SSGGGCCEEECTT----E--ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred ccCeEEecCcceeEEecCccc-ccccccccccccc----c--cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 45667777777665 22211 1112333333333 1 67777777 78888888877 677663 457
Q ss_pred ccccCccEEEecCccccccchhhhcCCCCCCEEEcCC
Q 046577 276 DLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVR 312 (878)
Q Consensus 276 ~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~ 312 (878)
.+|++|+.+++.++.+....+..|.++.++..+....
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 7778888888887777665556666666666665544
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=5.8e-10 Score=118.67 Aligned_cols=265 Identities=12% Similarity=0.120 Sum_probs=158.7
Q ss_pred CCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhhcC--------CCCCCEEEcCCCCCcccchh-hcCC
Q 046577 255 MRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAIIGK--------LENLEILSFVRSDTVQLPKA-LGQL 325 (878)
Q Consensus 255 l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i~~--------L~~L~~L~l~~~~l~~lp~~-i~~L 325 (878)
+++|++|||++|++......-+.+..++++.+..+.+. ...|.+ +.+|+.|++.. .++.++.. |..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 67788888888887722111122333555666555432 345666 88888888888 78877655 8888
Q ss_pred CCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCc-EEEEEecCCCcCCch
Q 046577 326 TKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLT-TLEIDVKNESMLPAG 404 (878)
Q Consensus 326 ~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~ 404 (878)
++|+.+++.++. +..++...|..+.++..+........ ..........+..+..|+ .+.+.. ...++..
T Consensus 124 ~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~-------~~~~~i~~~~f~~~~~L~~~i~~~~--~~~l~~~ 193 (329)
T 3sb4_A 124 DNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAY-------RFKNRWEHFAFIEGEPLETTIQVGA--MGKLEDE 193 (329)
T ss_dssp TTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHH-------HTSTTTTTSCEEESCCCEEEEEECT--TCCHHHH
T ss_pred cccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhh-------hccccccccccccccccceeEEecC--CCcHHHH
Confidence 888888888887 77788777888777777665442111 000001112233445555 333321 1112211
Q ss_pred h-----hhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccceeecccCCCCCcccccccCccEE
Q 046577 405 F-----LARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRL 479 (878)
Q Consensus 405 ~-----~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L 479 (878)
+ ...++..+.+.+. +... ....+. ..+++|++|++.+++++.+....| ..+++|+.|
T Consensus 194 ~~~~~~~~~~~~~l~~~~~-l~~~---------~~~~l~--~~~~~L~~l~L~~n~i~~I~~~aF------~~~~~L~~l 255 (329)
T 3sb4_A 194 IMKAGLQPRDINFLTIEGK-LDNA---------DFKLIR--DYMPNLVSLDISKTNATTIPDFTF------AQKKYLLKI 255 (329)
T ss_dssp HHHTTCCGGGCSEEEEEEC-CCHH---------HHHHHH--HHCTTCCEEECTTBCCCEECTTTT------TTCTTCCEE
T ss_pred HhhcccCccccceEEEeee-ecHH---------HHHHHH--HhcCCCeEEECCCCCcceecHhhh------hCCCCCCEE
Confidence 1 0111111111100 0000 000000 037899999999988887754443 368999999
Q ss_pred eeccccccccccchhhhcccCCcC-EEEEeCCchhHHHhhcccCCCCCCcccCcccceeccccccccccccCCCCcCCCC
Q 046577 480 IVWRCHKLKYIFSASMIGSLKQLQ-HLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWL 558 (878)
Q Consensus 480 ~L~~c~~l~~~~~~~~l~~l~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~ 558 (878)
++.+ + ++.+ +...+..+++|+ .+.+.+ .++.++...+. .+++|+.+++.. ++++.+.... ...++
T Consensus 256 ~l~~-n-i~~I-~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~-------~c~~L~~l~l~~-n~i~~I~~~a-F~~~~ 321 (329)
T 3sb4_A 256 KLPH-N-LKTI-GQRVFSNCGRLAGTLELPA--SVTAIEFGAFM-------GCDNLRYVLATG-DKITTLGDEL-FGNGV 321 (329)
T ss_dssp ECCT-T-CCEE-CTTTTTTCTTCCEEEEECT--TCCEECTTTTT-------TCTTEEEEEECS-SCCCEECTTT-TCTTC
T ss_pred ECCc-c-ccee-hHHHhhCChhccEEEEEcc--cceEEchhhhh-------CCccCCEEEeCC-CccCccchhh-hcCCc
Confidence 9987 3 7775 456688999999 999987 36666554443 488999999876 5777776554 34578
Q ss_pred CccEEEE
Q 046577 559 ALEMLFV 565 (878)
Q Consensus 559 ~L~~L~l 565 (878)
+|+.+..
T Consensus 322 ~L~~ly~ 328 (329)
T 3sb4_A 322 PSKLIYK 328 (329)
T ss_dssp CCCEEEC
T ss_pred chhhhcc
Confidence 8888753
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=4.6e-10 Score=106.78 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=79.4
Q ss_pred cEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccchhhhcCCCCCCEEEc
Q 046577 232 EFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSF 310 (878)
Q Consensus 232 r~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l 310 (878)
++++++++.... +|..+ .++|++|+|++|.+..+ |..|+++++|++|++++|.+.+..+..|.++.+|++|++
T Consensus 15 ~~l~~~~n~l~~---iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLAS---VPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSS---CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCc---cCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 566777776643 77654 37788888888888876 567788888888888888888733334678888888888
Q ss_pred CCCCCcccchh-hcCCCCccEEecCCCCCCCccCc
Q 046577 311 VRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAP 344 (878)
Q Consensus 311 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~ 344 (878)
++|+++.+|.. ++++++|++|++++|. +...+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 88888888776 7888888888888887 555544
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=5.3e-10 Score=105.99 Aligned_cols=104 Identities=21% Similarity=0.250 Sum_probs=80.5
Q ss_pred ccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccchhhhcCCCCCCEEE
Q 046577 231 LEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILS 309 (878)
Q Consensus 231 Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 309 (878)
.++++++++.... +|..+ .++|++|+|++|.++.+ |..|+.+++|++|++++|.+.+..+..|.++.+|++|+
T Consensus 11 ~~~l~~s~n~l~~---ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLAS---VPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCSS---CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCc---cCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 4567777776654 77654 37788888888888877 66788888888888888888874445568888888888
Q ss_pred cCCCCCcccchh-hcCCCCccEEecCCCCCCCc
Q 046577 310 FVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKV 341 (878)
Q Consensus 310 l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~ 341 (878)
+++|+++.+|.. +.++++|++|++++|. +..
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-~~c 116 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNP-WDC 116 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-BCT
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCC-CCC
Confidence 888888888765 7888888888888887 443
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.00 E-value=1.7e-08 Score=109.64 Aligned_cols=261 Identities=12% Similarity=0.144 Sum_probs=162.9
Q ss_pred CCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCCc-cccccccCccEEEecCccccccchhhhcCCCCCC
Q 046577 228 CPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLE 306 (878)
Q Consensus 228 ~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 306 (878)
+..++.+.+..+ ... ++...|.++ +|+.+++..+ ++.++ .+|.++ +|+.+.+.. .+...-...|.++.+|+
T Consensus 112 ~~~l~~i~ip~~-i~~---I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKS---IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp CSSCSEEECCTT-CCE---ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred cCCccEEEECCc-cCE---ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 456667776543 222 777778875 6888888765 66663 456663 688888876 55554557788899999
Q ss_pred EEEcCCCCCcccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCC
Q 046577 307 ILSFVRSDTVQLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLR 386 (878)
Q Consensus 307 ~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 386 (878)
.+++..++++.+|...-...+|+.+.+..+ ++.++...|.++++|+.+.+..+-.. .....+.. .
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~------------I~~~aF~~-~ 248 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVST------------IGQEAFRE-S 248 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCE------------ECTTTTTT-C
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccC------------cccccccc-C
Confidence 999988888888877444688999988754 78888888889999999988754211 11223444 5
Q ss_pred CCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceeeeccccce-----eecc
Q 046577 387 WLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALEISEINVD-----KIWH 461 (878)
Q Consensus 387 ~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~l~-----~~~~ 461 (878)
+|+.+.+. +....++..+ |. .+++|+.+.+.++.+. .+..
T Consensus 249 ~L~~i~lp-~~i~~I~~~a-------------------------------F~---~c~~L~~l~l~~~~~~~~~~~~I~~ 293 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRA-------------------------------FY---YCPELAEVTTYGSTFNDDPEAMIHP 293 (401)
T ss_dssp CCSEEEEE-TTCCEECTTT-------------------------------TT---TCTTCCEEEEESSCCCCCTTCEECT
T ss_pred CccEEEeC-CCccEEChhH-------------------------------hh---CCCCCCEEEeCCccccCCcccEECH
Confidence 78888773 2232222221 11 5777777777766332 2322
Q ss_pred cCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCcccCcccceecccc
Q 046577 462 YNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFVFPQLTTLRLQD 541 (878)
Q Consensus 462 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~p~L~~L~l~~ 541 (878)
.. |..+++|+.+.|.+ .++.+ +...+..|++|+.+.|... ++.+....+. .+ +|+.+.+.+
T Consensus 294 ~a------F~~c~~L~~l~l~~--~i~~I-~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~-------~~-~L~~l~l~~ 354 (401)
T 4fdw_A 294 YC------LEGCPKLARFEIPE--SIRIL-GQGLLGGNRKVTQLTIPAN--VTQINFSAFN-------NT-GIKEVKVEG 354 (401)
T ss_dssp TT------TTTCTTCCEECCCT--TCCEE-CTTTTTTCCSCCEEEECTT--CCEECTTSSS-------SS-CCCEEEECC
T ss_pred HH------hhCCccCCeEEeCC--ceEEE-hhhhhcCCCCccEEEECcc--ccEEcHHhCC-------CC-CCCEEEEcC
Confidence 22 23577788888774 35554 3345677788888888543 4444333222 35 777777776
Q ss_pred ccccccccCCCCcCCC-CCccEEEEcc
Q 046577 542 LPKLRCLYPGMHTPEW-LALEMLFVYR 567 (878)
Q Consensus 542 c~~L~~~~~~~~~~~~-~~L~~L~l~~ 567 (878)
+.+..+..+... .+ .+++.|.+-.
T Consensus 355 -n~~~~l~~~~F~-~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 355 -TTPPQVFEKVWY-GFPDDITVIRVPA 379 (401)
T ss_dssp -SSCCBCCCSSCC-CSCTTCCEEEECG
T ss_pred -CCCccccccccc-CCCCCccEEEeCH
Confidence 334444333322 23 3566666654
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.94 E-value=1.8e-08 Score=109.42 Aligned_cols=226 Identities=12% Similarity=0.123 Sum_probs=159.3
Q ss_pred ccccCCCCC-CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccc
Q 046577 218 CIHELPNAL-ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDID 295 (878)
Q Consensus 218 ~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~ 295 (878)
.++.++... .-.+|+.+.+..+ ... ++..+|.++ +|+.+++.. .+..+ +.+|.++.+|+.+++.+|.+.. +
T Consensus 123 ~i~~I~~~aF~~~~L~~i~l~~~-i~~---I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~-I 195 (401)
T 4fdw_A 123 SVKSIPKDAFRNSQIAKVVLNEG-LKS---IGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITK-L 195 (401)
T ss_dssp TCCEECTTTTTTCCCSEEECCTT-CCE---ECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSE-E
T ss_pred ccCEehHhhcccCCccEEEeCCC-ccE---ECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceE-e
Confidence 344554432 2247999998766 333 888888885 699999986 66766 4678999999999999999888 5
Q ss_pred hhhhcCCCCCCEEEcCCCCCcccchh-hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhhcccC
Q 046577 296 IAIIGKLENLEILSFVRSDTVQLPKA-LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERANSKR 374 (878)
Q Consensus 296 p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 374 (878)
+...-...+|+.+.+..+ ++.++.. |.++++|+.+.+..+ +..++...|.+ .+|+.+.+..+- .
T Consensus 196 ~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i-~---------- 260 (401)
T 4fdw_A 196 PASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNGV-T---------- 260 (401)
T ss_dssp CTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETTC-C----------
T ss_pred chhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCCc-c----------
Confidence 544333689999999854 7777654 889999999999874 78888887888 789999985432 2
Q ss_pred CCCChhhhcCCCCCcEEEEEecCCC-----cCCchhhhcccccccccccCcccccccccccccccccccccccCCCccee
Q 046577 375 SNASLDELMHLRWLTTLEIDVKNES-----MLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEAL 449 (878)
Q Consensus 375 ~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L 449 (878)
......+..+++|+.+.+.++... .++.. .|. .+++|+.+
T Consensus 261 -~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~-------------------------------aF~---~c~~L~~l 305 (401)
T 4fdw_A 261 -NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY-------------------------------CLE---GCPKLARF 305 (401)
T ss_dssp -EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT-------------------------------TTT---TCTTCCEE
T ss_pred -EEChhHhhCCCCCCEEEeCCccccCCcccEECHH-------------------------------Hhh---CCccCCeE
Confidence 123456788999999999876543 11111 122 57788888
Q ss_pred eeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCc
Q 046577 450 EISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCK 511 (878)
Q Consensus 450 ~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~ 511 (878)
.+.+ +++.+....|. .+.+|+.+.|.. +++.+ ....+..+ +|+.+.+.++.
T Consensus 306 ~l~~-~i~~I~~~aF~------~c~~L~~l~lp~--~l~~I-~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 306 EIPE-SIRILGQGLLG------GNRKVTQLTIPA--NVTQI-NFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CCCT-TCCEECTTTTT------TCCSCCEEEECT--TCCEE-CTTSSSSS-CCCEEEECCSS
T ss_pred EeCC-ceEEEhhhhhc------CCCCccEEEECc--cccEE-cHHhCCCC-CCCEEEEcCCC
Confidence 8874 45555444332 578888888854 35554 33446777 88888888775
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.84 E-value=9.1e-10 Score=118.48 Aligned_cols=135 Identities=16% Similarity=0.076 Sum_probs=57.8
Q ss_pred CCCcEEEeeCCCCCC--CccccccccCccEEEecCccccccchhhh-----cCCCCCCEEEcCCCCCcc-----cchhhc
Q 046577 256 RKLKVVDFTGMQLFS--LPSSIDLLVKLKTLCLDESILRDIDIAII-----GKLENLEILSFVRSDTVQ-----LPKALG 323 (878)
Q Consensus 256 ~~Lr~L~L~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~i-----~~L~~L~~L~l~~~~l~~-----lp~~i~ 323 (878)
++|++|+|++|.+.. +......+.+|++|++++|.+.......+ ....+|++|++++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 345555555554431 11112233445555555555443222222 123455555555554432 233334
Q ss_pred CCCCccEEecCCCCCCCccC----cchhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCC
Q 046577 324 QLTKLRLLDLTDCFHLKVIA----PNVISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNE 398 (878)
Q Consensus 324 ~L~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (878)
.+++|++|++++|. ++... ...+...++|++|++++|.+..... ......+...++|++|++++|.+
T Consensus 181 ~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~-------~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 181 GNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA-------LALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp TCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-------HHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-------HHHHHHHHhCCCCCEEeccCCCC
Confidence 45555555555554 33221 1113344455555555555442111 11223344445555555555543
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1.1e-08 Score=109.67 Aligned_cols=101 Identities=21% Similarity=0.236 Sum_probs=63.4
Q ss_pred EEeeCC-CCCCCccccccccCccEEEecC-ccccccchhhhcCCCCCCEEEcCCCCCcccch-hhcCCCCccEEecCCCC
Q 046577 261 VDFTGM-QLFSLPSSIDLLVKLKTLCLDE-SILRDIDIAIIGKLENLEILSFVRSDTVQLPK-ALGQLTKLRLLDLTDCF 337 (878)
Q Consensus 261 L~L~~~-~i~~lp~~~~~l~~L~~L~l~~-~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 337 (878)
++.+++ .++.+|. ++.+.+|++|+|++ |.+.+..+..|++|.+|++|+|++|+++.+|. .|++|++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455655 6666666 66666666666664 66666444566666667777776666665544 35666777777776666
Q ss_pred CCCccCcchhcCCccccEEEcccCcch
Q 046577 338 HLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 338 ~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
+..+|...+..++ |+.|++.+|.+.
T Consensus 92 -l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 -LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666665444444 666666666544
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=3.5e-08 Score=105.85 Aligned_cols=100 Identities=18% Similarity=0.064 Sum_probs=81.7
Q ss_pred EEEcCCC-CCccccCcChhhhhCCCCCcEEEeeC-CCCCCCc-cccccccCccEEEecCccccccchhhhcCCCCCCEEE
Q 046577 233 FLCMSPE-DSSLEVSIPENFFVGMRKLKVVDFTG-MQLFSLP-SSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILS 309 (878)
Q Consensus 233 ~L~l~~~-~~~~~~~l~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 309 (878)
.++.+++ .... +|. +..+.+|++|+|++ |.+..+| ..|+.+.+|++|+|++|.+.+..|..|.+|.+|++|+
T Consensus 12 ~v~~~~~n~l~~---ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDS---LHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTT---TTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCc---cCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 3456665 5543 887 68888999999996 8998775 6789999999999999999986777889999999999
Q ss_pred cCCCCCcccchhhcCCCCccEEecCCCC
Q 046577 310 FVRSDTVQLPKALGQLTKLRLLDLTDCF 337 (878)
Q Consensus 310 l~~~~l~~lp~~i~~L~~L~~L~l~~~~ 337 (878)
|++|+++.+|..+....+|++|++.+|.
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CCCCccceeCHHHcccCCceEEEeeCCC
Confidence 9999999888765444449999999887
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=8.5e-09 Score=110.90 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=97.9
Q ss_pred CCCCcEEEeeCCCCCCC-cccccc-----ccCccEEEecCccccccchhhh-cCCCCCCEEEcCCCCCcccc-----hhh
Q 046577 255 MRKLKVVDFTGMQLFSL-PSSIDL-----LVKLKTLCLDESILRDIDIAII-GKLENLEILSFVRSDTVQLP-----KAL 322 (878)
Q Consensus 255 l~~Lr~L~L~~~~i~~l-p~~~~~-----l~~L~~L~l~~~~~~~~~p~~i-~~L~~L~~L~l~~~~l~~lp-----~~i 322 (878)
+++|++|++++|.++.. ...+.. ..+|++|+|++|.+.......+ ..+.+|++|++++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46789999999988742 222322 3689999999999875333333 34678999999999887432 222
Q ss_pred -cCCCCccEEecCCCCCCCccCcc----hhcCCccccEEEcccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecC
Q 046577 323 -GQLTKLRLLDLTDCFHLKVIAPN----VISSLIRLEELYMCNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKN 397 (878)
Q Consensus 323 -~~L~~L~~L~l~~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 397 (878)
...++|++|++++|. ++..... .+...++|++|++++|.+...+. ......+...++|++|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-------~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-------ELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-------HHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-------HHHHHHHhcCCCcCeEECCCCC
Confidence 346889999999997 6553322 14678999999999999873322 1234567778899999999987
Q ss_pred CC
Q 046577 398 ES 399 (878)
Q Consensus 398 ~~ 399 (878)
++
T Consensus 223 i~ 224 (372)
T 3un9_A 223 AG 224 (372)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.59 E-value=9.3e-07 Score=96.37 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=17.9
Q ss_pred HHHcCCCceEEEeccCccceeeccccccccccccccccceeecc
Q 046577 650 LERFHNLEILTLFNFSFHEEVFSMEGCLEKHVGKLATIKELELY 693 (878)
Q Consensus 650 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~L~~L~l~ 693 (878)
+.+|.+|+.+.+.. +++.+. ...+..+++|+.+.+.
T Consensus 339 F~~c~~L~~i~lp~--~l~~I~------~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 339 FRGCTSLSNINFPL--SLRKIG------ANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEEC------TTTBTTCTTCCEEEEE
T ss_pred ccCCCCCCEEEECc--cccEeh------HHHhhCCCCCCEEEEC
Confidence 44555566555542 244332 2234555666666653
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.48 E-value=4e-06 Score=91.28 Aligned_cols=133 Identities=15% Similarity=0.190 Sum_probs=77.7
Q ss_pred cccCCCCC--CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccc
Q 046577 219 IHELPNAL--ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDID 295 (878)
Q Consensus 219 ~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~ 295 (878)
++++.... .|.+|+.+.+..+ ... |+..+|.++.+|+.+++..+ ++.+ ..+|.++..|+.+.+..+ +....
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~---I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~ 132 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VRE---IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIG 132 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCE---ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccC---cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeec
Confidence 45565543 7888888888643 322 77888888899999888654 5555 345777777777666543 22213
Q ss_pred hhhhcCCCCCCEEEcCCCCCcccc-hhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccC
Q 046577 296 IAIIGKLENLEILSFVRSDTVQLP-KALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNC 361 (878)
Q Consensus 296 p~~i~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~ 361 (878)
...|.++..++..... .+..+. ..|.++++|+.+.+..+ +..++...+.++.+|+.+.+..+
T Consensus 133 ~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 133 VEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ceeeecccccccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC
Confidence 3344444333222221 122222 23666677777766543 45566666666777776666443
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=8.2e-08 Score=89.20 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=52.0
Q ss_pred cceeeEEeecccccccccCCCcccccCccEEEecCCCCcccccchhHHh---hcccccEEEEcccccccceecccccccc
Q 046577 713 QYLEILKVYHCQSLLILLPSSSVSFGNLTKLVASGCKELMHLVTSSTAK---TLVRLVSLGVYGCRAMTEVVINDKDGVE 789 (878)
Q Consensus 713 ~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~---~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 789 (878)
..|++|++++|. +++..-..+..+++|++|++++|..+++-....... .+++|++|+|++|+++++--...
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~----- 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA----- 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-----
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-----
Confidence 457777777776 655433335667777777777777777653322222 13467777777776665421111
Q ss_pred cceeeeccccceecccCCCcce
Q 046577 790 KEEIVFRKLKTLELCDLDSLTS 811 (878)
Q Consensus 790 ~~~~~l~~L~~L~l~~c~~L~~ 811 (878)
+..+++|++|++++|+++++
T Consensus 135 --L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 --LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp --GGGCTTCCEEEEESCTTCCC
T ss_pred --HhcCCCCCEEECCCCCCCCc
Confidence 11256666666666666654
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=1.5e-07 Score=87.52 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=37.8
Q ss_pred CcccceeeEEeecccccccccCCCccc----ccCccEEEecCCCCcccccchhHHhhcccccEEEEcccccccc
Q 046577 710 PIFQYLEILKVYHCQSLLILLPSSSVS----FGNLTKLVASGCKELMHLVTSSTAKTLVRLVSLGVYGCRAMTE 779 (878)
Q Consensus 710 ~~~~~L~~L~l~~c~~l~~l~~~~~~~----l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 779 (878)
..+++|++|++++|..+++..-..+.. .++|++|+|++|+++++-... .+..+++|++|+|++|+.++.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 445566666666666665542111222 235666666666666664432 234566666666666666654
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.29 E-value=1.2e-06 Score=93.26 Aligned_cols=160 Identities=19% Similarity=0.153 Sum_probs=104.8
Q ss_pred CCCCccEEEcCCCCCc-----c--ccCcChhhhhCCCCCcEEEeeCCCCCCCccccccccCccEEEecCccccccchhhh
Q 046577 227 ECPQLEFLCMSPEDSS-----L--EVSIPENFFVGMRKLKVVDFTGMQLFSLPSSIDLLVKLKTLCLDESILRDIDIAII 299 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~-----~--~~~l~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~i 299 (878)
.+++|+.|.+...... . .. -...++..+++|+.|+|+++.-..++. +. +.+|+.|++..|.+.......+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~-~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQV-DLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCC-BCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhccccccccc-CHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 4678999988654221 0 00 123556889999999999884234554 43 7899999999988765444455
Q ss_pred c--CCCCCCEEEcCCC--C------Ccccchhh--cCCCCccEEecCCCCCCCc-cCcchh---cCCccccEEEcccCcc
Q 046577 300 G--KLENLEILSFVRS--D------TVQLPKAL--GQLTKLRLLDLTDCFHLKV-IAPNVI---SSLIRLEELYMCNCSI 363 (878)
Q Consensus 300 ~--~L~~L~~L~l~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~~l~~-~~~~~~---~~l~~L~~L~l~~~~~ 363 (878)
. .+++|++|+|+.+ . +..+...+ +.+++|++|++.+|. +.. .+.. + ..+++|++|+++.|.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~-la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEM-FLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHH-HHHCSSGGGCSEEECCSSCC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHH-HHhCccCCCCCEEECCCCCC
Confidence 4 7899999998532 1 22222222 357899999999887 432 2222 2 2578999999998877
Q ss_pred hhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCC
Q 046577 364 EWEVERANSKRSNASLDELMHLRWLTTLEIDVKNE 398 (878)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 398 (878)
.-.+. ......+..+++|+.|+++.|.+
T Consensus 292 ~d~G~-------~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 292 TDEGA-------RLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp BHHHH-------HHHHTTHHHHTTCSEEECCSBBC
T ss_pred ChHHH-------HHHHhhcccCCcceEEECCCCcC
Confidence 63221 11233445678999999987754
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.06 E-value=0.00014 Score=79.05 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=17.4
Q ss_pred hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcc
Q 046577 322 LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMC 359 (878)
Q Consensus 322 i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 359 (878)
+..+.+|+.+.+... +..++...+..+.+|+.+.+.
T Consensus 133 F~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECC
T ss_pred hhhhcccccccccce--eeeecccceeccccccccccc
Confidence 444455555555432 344444445555555555543
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.06 E-value=0.00027 Score=76.66 Aligned_cols=310 Identities=13% Similarity=0.145 Sum_probs=176.6
Q ss_pred cccCCCCC--CCC-CccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCC---CCCC-ccccccccCccEEEecCccc
Q 046577 219 IHELPNAL--ECP-QLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQ---LFSL-PSSIDLLVKLKTLCLDESIL 291 (878)
Q Consensus 219 ~~~l~~~~--~~~-~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~---i~~l-p~~~~~l~~L~~L~l~~~~~ 291 (878)
++++.... .+. .|+++.+..+ ... |...+|.++.+|+.+.+..+. ++.+ ..+|..+.+|+.+.+..+ +
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~---Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~ 125 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTE---IGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-V 125 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCE---ECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-C
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeE---EhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-c
Confidence 34555442 453 5888888654 222 888889999999999998763 5555 456788888888877654 3
Q ss_pred cccchhhhcCCCCCCEEEcCCCCCcccch-hhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcchhHHhhh
Q 046577 292 RDIDIAIIGKLENLEILSFVRSDTVQLPK-ALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIEWEVERA 370 (878)
Q Consensus 292 ~~~~p~~i~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 370 (878)
.......+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+..+ +..+....+.+ .+|+.+.+......
T Consensus 126 ~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~~~~------ 195 (394)
T 4gt6_A 126 TEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAKVTR------ 195 (394)
T ss_dssp SEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTTCCE------
T ss_pred ceehhhhhhhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCcccc------
Confidence 4434567888999999999754 444543 3778899999988765 67777775654 67888887544322
Q ss_pred cccCCCCChhhhcCCCCCcEEEEEecCCCcCCchhhhcccccccccccCcccccccccccccccccccccccCCCcceee
Q 046577 371 NSKRSNASLDELMHLRWLTTLEIDVKNESMLPAGFLARKLERQVSQEESTTTYCSSEITLDTSTLLFNEKVALPNLEALE 450 (878)
Q Consensus 371 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~L~~L~ 450 (878)
.....+..+..+................+ ... ........ ..+ .....+..+.
T Consensus 196 ------i~~~af~~c~~l~~~~~~~~~~~~~~~~~-~~~--------~~~~~~~~---------~~~---~~~~~~~~~~ 248 (394)
T 4gt6_A 196 ------IGTNAFSECFALSTITSDSESYPAIDNVL-YEK--------SANGDYAL---------IRY---PSQREDPAFK 248 (394)
T ss_dssp ------ECTTTTTTCTTCCEEEECCSSSCBSSSCE-EEE--------CTTSCEEE---------EEC---CTTCCCSEEE
T ss_pred ------cccchhhhccccceeccccccccccccee-ecc--------cccccccc---------ccc---ccccccceEE
Confidence 12344566777777665543322221111 000 00000000 000 0122233333
Q ss_pred eccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhcccCCCCCCccc
Q 046577 451 ISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENRADQVIPYFV 530 (878)
Q Consensus 451 l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 530 (878)
+-+ .++.+....| ..+.+|+.+.+.+ .+..+ ....+..+++|+.+.+.. .++.++...+. .
T Consensus 249 ip~-~v~~i~~~aF------~~c~~L~~i~lp~--~~~~I-~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~-------~ 309 (394)
T 4gt6_A 249 IPN-GVARIETHAF------DSCAYLASVKMPD--SVVSI-GTGAFMNCPALQDIEFSS--RITELPESVFA-------G 309 (394)
T ss_dssp CCT-TEEEECTTTT------TTCSSCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTT-------T
T ss_pred cCC-cceEccccee------eecccccEEeccc--cccee-cCcccccccccccccCCC--cccccCceeec-------C
Confidence 221 2233222222 2466777777754 22332 233466777888877743 24444333322 3
Q ss_pred CcccceeccccccccccccCCCCcCCCCCccEEEEccCCCccchhhhhhccccCCCCCCCCCCCCCCccccCCCcceEEe
Q 046577 531 FPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFVYRCDKLKIFAADLLQKNENDQLGIPVQQPPLPLEKILPNLTELSL 610 (878)
Q Consensus 531 ~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~C~~L~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 610 (878)
+.+|+.+.|.+ +++.+.... ...|.+|+++.|-+ +++.++. .....+++|+.+++
T Consensus 310 c~~L~~i~lp~--~v~~I~~~a-F~~C~~L~~i~ip~--sv~~I~~--------------------~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 310 CISLKSIDIPE--GITQILDDA-FAGCEQLERIAIPS--SVTKIPE--------------------SAFSNCTALNNIEY 364 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTT-TTTCTTCCEEEECT--TCCBCCG--------------------GGGTTCTTCCEEEE
T ss_pred CCCcCEEEeCC--cccEehHhH-hhCCCCCCEEEECc--ccCEEhH--------------------hHhhCCCCCCEEEE
Confidence 67788887764 455554433 34577888888753 3555532 12256788888888
Q ss_pred ccCC
Q 046577 611 SGKD 614 (878)
Q Consensus 611 ~~~~ 614 (878)
.++.
T Consensus 365 ~~~~ 368 (394)
T 4gt6_A 365 SGSR 368 (394)
T ss_dssp SSCH
T ss_pred CCce
Confidence 8764
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.05 E-value=3.9e-06 Score=80.30 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=60.6
Q ss_pred hhCCCCCcEEEeeCC-CCC-----CCccccccccCccEEEecCcccccc----chhhhcCCCCCCEEEcCCCCCcc----
Q 046577 252 FVGMRKLKVVDFTGM-QLF-----SLPSSIDLLVKLKTLCLDESILRDI----DIAIIGKLENLEILSFVRSDTVQ---- 317 (878)
Q Consensus 252 ~~~l~~Lr~L~L~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~i~~L~~L~~L~l~~~~l~~---- 317 (878)
+...+.|++|+|++| .+. .+.+.+...++|++|+|++|.+... +...+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 455666777777766 654 2344455556677777777666531 23344445666666666666552
Q ss_pred -cchhhcCCCCccEEec--CCCCCCCccCcc----hhcCCccccEEEcccCcch
Q 046577 318 -LPKALGQLTKLRLLDL--TDCFHLKVIAPN----VISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 318 -lp~~i~~L~~L~~L~l--~~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~ 364 (878)
+...+...++|++|++ ++|. ++..... .+...+.|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3444555566666666 4454 4332111 1333355666666555543
No 159
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.91 E-value=1.4e-05 Score=84.83 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=82.7
Q ss_pred CCCCccEEEcCCCCCccccCcChhhhhCCCCCcEEEeeCCCCCC-Cccccc--cccCccEEEecCc--cccc-----cch
Q 046577 227 ECPQLEFLCMSPEDSSLEVSIPENFFVGMRKLKVVDFTGMQLFS-LPSSID--LLVKLKTLCLDES--ILRD-----IDI 296 (878)
Q Consensus 227 ~~~~Lr~L~l~~~~~~~~~~l~~~~~~~l~~Lr~L~L~~~~i~~-lp~~~~--~l~~L~~L~l~~~--~~~~-----~~p 296 (878)
.+++|+.|.+.++... . ++. + .+++|+.|++..+.+.. ....++ .+++|++|+|+.+ ...+ .+.
T Consensus 170 ~~P~L~~L~L~g~~~l-~--l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-S--IGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TCTTCCEEEEECCBTC-B--CCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred cCCCCcEEEEeCCCCc-e--ecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 5678888888776321 1 444 2 37888888888877652 122333 6788888888532 1111 011
Q ss_pred hhh--cCCCCCCEEEcCCCCCcc-cchhh---cCCCCccEEecCCCCCCCcc-----CcchhcCCccccEEEcccCcch
Q 046577 297 AII--GKLENLEILSFVRSDTVQ-LPKAL---GQLTKLRLLDLTDCFHLKVI-----APNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 297 ~~i--~~L~~L~~L~l~~~~l~~-lp~~i---~~L~~L~~L~l~~~~~l~~~-----~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
..+ ..+++|++|++.+|.+.. .+..+ ..+++|++|+++.|. ++.. +.+ +..+++|+.|+++.|.+.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 222 247889999998887752 22222 357889999998876 6552 322 456788999999888765
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.82 E-value=1.2e-05 Score=76.77 Aligned_cols=119 Identities=14% Similarity=0.081 Sum_probs=90.0
Q ss_pred ccccccccCccEEEecCc-cccc----cchhhhcCCCCCCEEEcCCCCCcc-----cchhhcCCCCccEEecCCCCCCCc
Q 046577 272 PSSIDLLVKLKTLCLDES-ILRD----IDIAIIGKLENLEILSFVRSDTVQ-----LPKALGQLTKLRLLDLTDCFHLKV 341 (878)
Q Consensus 272 p~~~~~l~~L~~L~l~~~-~~~~----~~p~~i~~L~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~ 341 (878)
...+...++|++|+|++| .+.. .+...+....+|++|++++|.+.. +...+...++|++|++++|. ++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence 445667889999999999 8764 245667778999999999998863 44556677899999999998 665
Q ss_pred c-----CcchhcCCccccEEEc--ccCcchhHHhhhcccCCCCChhhhcCCCCCcEEEEEecCCC
Q 046577 342 I-----APNVISSLIRLEELYM--CNCSIEWEVERANSKRSNASLDELMHLRWLTTLEIDVKNES 399 (878)
Q Consensus 342 ~-----~~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 399 (878)
. ... +...+.|++|++ ++|.+...+. ......+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~-------~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNNVE-------MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHH-------HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHH-------HHHHHHHHhCCCcCEEeccCCCCC
Confidence 3 333 667789999999 7888774332 123456677789999999988753
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=1.2e-05 Score=80.73 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=6.4
Q ss_pred CCCCcEEEeeCCCCC
Q 046577 255 MRKLKVVDFTGMQLF 269 (878)
Q Consensus 255 l~~Lr~L~L~~~~i~ 269 (878)
+++|+.|+|++|.+.
T Consensus 169 l~~L~~L~Ls~N~l~ 183 (267)
T 3rw6_A 169 IPELLSLNLSNNRLY 183 (267)
T ss_dssp CTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCC
Confidence 344444444444443
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=6.6e-05 Score=75.36 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=65.8
Q ss_pred EEeeCCCCCCCccc----cccccCccEEEecCccccc--cchhhhcCCCCCCEEEcCCCCCcccchhhcCCC--CccEEe
Q 046577 261 VDFTGMQLFSLPSS----IDLLVKLKTLCLDESILRD--IDIAIIGKLENLEILSFVRSDTVQLPKALGQLT--KLRLLD 332 (878)
Q Consensus 261 L~L~~~~i~~lp~~----~~~l~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~ 332 (878)
++++.|....++.. ..++++|++|+|++|.+.+ .+|..+..+++|++|+|++|.++.+ ..+..++ +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEE
Confidence 45555544433322 2467888999999888876 3446677888899999988888866 3355555 888888
Q ss_pred cCCCCCCCccCc------chhcCCccccEEEc
Q 046577 333 LTDCFHLKVIAP------NVISSLIRLEELYM 358 (878)
Q Consensus 333 l~~~~~l~~~~~------~~~~~l~~L~~L~l 358 (878)
+++|.-...+|. .++..+++|+.|+-
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 888873333431 23677888888873
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.31 E-value=0.004 Score=66.98 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=53.6
Q ss_pred cCCCcceeeeccccceeecccCCCCCcccccccCccEEeeccccccccccchhhhcccCCcCEEEEeCCchhHHHhhccc
Q 046577 442 ALPNLEALEISEINVDKIWHYNQIPAAVFPHFQSLTRLIVWRCHKLKYIFSASMIGSLKQLQHLDIRDCKDLQEIISENR 521 (878)
Q Consensus 442 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~l~~l~~L~~L~l~~~~~l~~~~~~~~ 521 (878)
.+.+|+.+.+..+ ++.+....+ ..+.+|+.+.+.. .++.+ +...+..+.+|+.+.+.++. ++.++...+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF------~~~~~l~~i~l~~--~i~~i-~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF 306 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLL------QNCTALKTLNFYA--KVKTV-PYLLCSGCSNLTKVVMDNSA-IETLEPRVF 306 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTT------TTCTTCCEEEECC--CCSEE-CTTTTTTCTTCCEEEECCTT-CCEECTTTT
T ss_pred CCccceEEEcCCC-ccEeCcccc------ceeehhccccccc--cceec-cccccccccccccccccccc-cceehhhhh
Confidence 4566777666543 333322222 1456777777754 34443 33446777788888776554 444433322
Q ss_pred CCCCCCcccCcccceeccccccccccccCCCCcCCCCCccEEEE
Q 046577 522 ADQVIPYFVFPQLTTLRLQDLPKLRCLYPGMHTPEWLALEMLFV 565 (878)
Q Consensus 522 ~~~~~~~~~~p~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l 565 (878)
. .+.+|+.+.|.+ +++.+.... ...|.+|+.+.+
T Consensus 307 ~-------~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~i 340 (379)
T 4h09_A 307 M-------DCVKLSSVTLPT--ALKTIQVYA-FKNCKALSTISY 340 (379)
T ss_dssp T-------TCTTCCEEECCT--TCCEECTTT-TTTCTTCCCCCC
T ss_pred c-------CCCCCCEEEcCc--cccEEHHHH-hhCCCCCCEEEE
Confidence 2 356777777653 344443322 223444554444
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.29 E-value=0.015 Score=62.52 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=56.5
Q ss_pred hhhhhCCCCCcEEEeeCCCCCCC-ccccccccCccEEEecCccccccchhhhcCCCCCCEEEcCCCCCcccchh-hcCCC
Q 046577 249 ENFFVGMRKLKVVDFTGMQLFSL-PSSIDLLVKLKTLCLDESILRDIDIAIIGKLENLEILSFVRSDTVQLPKA-LGQLT 326 (878)
Q Consensus 249 ~~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~l~~~~l~~lp~~-i~~L~ 326 (878)
...|.....|+.+.+..+ +..+ ..++..+..|+.+.+..+ +...-...+.++.+|+.+.+.. .+..++.. +..++
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccc
Confidence 334455556666655433 2222 234455556666666543 3332334555566666666643 24444332 55566
Q ss_pred CccEEecCCCCCCCccCcchhcCCccccEEEcc
Q 046577 327 KLRLLDLTDCFHLKVIAPNVISSLIRLEELYMC 359 (878)
Q Consensus 327 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~ 359 (878)
+|+.+.+.++. ++.++...|.++.+|+.+.+.
T Consensus 287 ~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 287 NLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCCEEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred ccccccccccc-cceehhhhhcCCCCCCEEEcC
Confidence 66666665554 556665556666666666664
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.32 E-value=0.059 Score=47.30 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=38.0
Q ss_pred EEEcCCCCCc--ccchhhcCCCCccEEecCCCCCCCccCcchhcCCccccEEEcccCcch
Q 046577 307 ILSFVRSDTV--QLPKALGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCNCSIE 364 (878)
Q Consensus 307 ~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 364 (878)
.++-+++.++ .+|..+. .+|++|+|++|. ++.++.+.+..+++|+.|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 6665422 367778887777 77777777777777888887777553
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.28 E-value=0.064 Score=47.07 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=5.0
Q ss_pred ccEEEecCccccc
Q 046577 281 LKTLCLDESILRD 293 (878)
Q Consensus 281 L~~L~l~~~~~~~ 293 (878)
|++|+|++|.++.
T Consensus 33 l~~L~Ls~N~l~~ 45 (130)
T 3rfe_A 33 TTELVLTGNNLTA 45 (130)
T ss_dssp CSEEECTTSCCSS
T ss_pred CCEEECCCCcCCc
Confidence 3333333333333
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.24 E-value=0.055 Score=51.00 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=38.4
Q ss_pred hCCCCCcEEEeeCC-CCC-----CCccccccccCccEEEecCcccccc----chhhhcCCCCCCEEEcCCCCCcc-----
Q 046577 253 VGMRKLKVVDFTGM-QLF-----SLPSSIDLLVKLKTLCLDESILRDI----DIAIIGKLENLEILSFVRSDTVQ----- 317 (878)
Q Consensus 253 ~~l~~Lr~L~L~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~i~~L~~L~~L~l~~~~l~~----- 317 (878)
.+-+.|+.|+|+++ .|. .+-+.+..-..|+.|+|++|.+... +-+.+..-..|++|+|++|.|..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33455666666553 443 1233344445566666666655431 22223334455555555555441
Q ss_pred cchhhcCCCCccEEecCC
Q 046577 318 LPKALGQLTKLRLLDLTD 335 (878)
Q Consensus 318 lp~~i~~L~~L~~L~l~~ 335 (878)
+-..+..=+.|++|++++
T Consensus 118 la~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHTTTTCCCSEEECCC
T ss_pred HHHHHhhCCceeEEECCC
Confidence 122233334455555554
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.85 E-value=0.55 Score=49.16 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=84.1
Q ss_pred ccEEccCCChHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCC-CchhH-HHHHHHhcCCCCCCc
Q 046577 5 DNFLINNLNEEEAGRLFKMMAGDDVENRELKSTAIDVARACGGLPIALTTVAKALRGK-SLHEW-KNSLRELRTPSMVNF 82 (878)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k-~~~~W-~~~l~~l~~~~~~~~ 82 (878)
..+++.+|+.+|+.+++.+.++...... -.+...+|+..|+|.|+++..++..+... ...+| ..+.+.....
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 269 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL----- 269 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH-----
Confidence 4789999999999999988652111111 13577899999999999999998765321 11111 1121111000
Q ss_pred CCchhhHHHHHHHHHhcCCCchhHHHHHHhccCCCCCChhHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHhcccccc
Q 046577 83 EGVSAETYSSIELSFKYLKGGQLKELFQLCSLMGNSIPTLKLLKYSIGLGIFQGVNKMEDARNKLYALVHELRDSCLLLE 162 (878)
Q Consensus 83 ~~~~~~i~~~L~lSy~~L~~~~lk~cFly~~~fp~~i~~~~li~~w~~~g~~~~~~~~e~~~~~~~~~l~~L~~r~l~~~ 162 (878)
...+ +-.+.++ ++. .+..+..+|. .......+.....+.. ++.+..++ ..+++.|++.+++..
T Consensus 270 --~~~~---l~~l~~~--~~~-~~~~l~~la~--g~~~~~~l~~~~~~~~---~~~~~~~~----~~~l~~L~~~gli~~ 332 (350)
T 2qen_A 270 --IMGE---LEELRRR--SPR-YVDILRAIAL--GYNRWSLIRDYLAVKG---TKIPEPRL----YALLENLKKMNWIVE 332 (350)
T ss_dssp --HHHH---HHHHHHH--CHH-HHHHHHHHHT--TCCSHHHHHHHHHHTT---CCCCHHHH----HHHHHHHHHTTSEEE
T ss_pred --HHHH---HHHHHhC--Chh-HHHHHHHHHh--CCCCHHHHHHHHHHHh---CCCCHHHH----HHHHHHHHhCCCEEe
Confidence 1111 1122222 555 6888888887 2245555555432211 01112222 234899999999865
Q ss_pred cCCCCcEEc-cHHHHHH
Q 046577 163 GDSNKLISM-HDVVRDV 178 (878)
Q Consensus 163 ~~~~~~~~m-Hdl~~~l 178 (878)
. .+.|++ |.++++.
T Consensus 333 ~--~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 333 E--DNTYKIADPVVATV 347 (350)
T ss_dssp E--TTEEEESSHHHHHH
T ss_pred c--CCEEEEecHHHHHH
Confidence 4 245665 5565553
No 169
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.51 E-value=0.15 Score=48.12 Aligned_cols=110 Identities=9% Similarity=-0.000 Sum_probs=70.1
Q ss_pred CCCccEEEcCCC-CCcccc-CcChhhhhCCCCCcEEEeeCCCCC-----CCccccccccCccEEEecCcccccc----ch
Q 046577 228 CPQLEFLCMSPE-DSSLEV-SIPENFFVGMRKLKVVDFTGMQLF-----SLPSSIDLLVKLKTLCLDESILRDI----DI 296 (878)
Q Consensus 228 ~~~Lr~L~l~~~-~~~~~~-~l~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~~~~----~p 296 (878)
-+.|+.|+++++ .+...+ ..-...+..-..|+.|+|++|.|. .+.+.+..-+.|++|+|++|.|... +-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 357788888764 432110 011233456688999999999887 3455566667899999999988752 33
Q ss_pred hhhcCCCCCCEEEcCCCCC---c-----ccchhhcCCCCccEEecCCCC
Q 046577 297 AIIGKLENLEILSFVRSDT---V-----QLPKALGQLTKLRLLDLTDCF 337 (878)
Q Consensus 297 ~~i~~L~~L~~L~l~~~~l---~-----~lp~~i~~L~~L~~L~l~~~~ 337 (878)
+.+..-..|++|+++++.. . .+...+..=+.|+.|+++.+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4455567799999986533 3 122334444677777776553
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.75 E-value=0.58 Score=49.14 Aligned_cols=146 Identities=13% Similarity=0.104 Sum_probs=83.8
Q ss_pred ccEEccCCChHHHHHHHHHhcC-CCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCC-chhHH-HHHHHhcCCCCCC
Q 046577 5 DNFLINNLNEEEAGRLFKMMAG-DDVENRELKSTAIDVARACGGLPIALTTVAKALRGKS-LHEWK-NSLRELRTPSMVN 81 (878)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~-~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~~k~-~~~W~-~~l~~l~~~~~~~ 81 (878)
..+++.+|+.+|+.+++.+.++ .....+.. .+|+++|+|.|+++..++..+.... ..+|- .+.+.
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 269 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY-------- 269 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH--------
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH--------
Confidence 5789999999999999998652 11111221 8999999999999999998765322 12231 11111
Q ss_pred cCCchhhHHHHHH-HHHh--cCCCchhHHHHHHhccCCCCCChhHHHHHHh-hcccccCcchHHHHHHHHHHHHHHHHhc
Q 046577 82 FEGVSAETYSSIE-LSFK--YLKGGQLKELFQLCSLMGNSIPTLKLLKYSI-GLGIFQGVNKMEDARNKLYALVHELRDS 157 (878)
Q Consensus 82 ~~~~~~~i~~~L~-lSy~--~L~~~~lk~cFly~~~fp~~i~~~~li~~w~-~~g~~~~~~~~e~~~~~~~~~l~~L~~r 157 (878)
....+...+. +.|+ .+++. .+..+..+|.-+ ....+..... ..|. ..+..++ ..+++.|++.
T Consensus 270 ---~~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~g~---~~~~l~~~~~~~~g~---~~~~~~~----~~~L~~L~~~ 335 (357)
T 2fna_A 270 ---AKKLILKEFENFLHGREIARKR-YLNIMRTLSKCG---KWSDVKRALELEEGI---EISDSEI----YNYLTQLTKH 335 (357)
T ss_dssp ---HHHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTTCB---CHHHHHHHHHHHHCS---CCCHHHH----HHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhhccccccHH-HHHHHHHHHcCC---CHHHHHHHHHHhcCC---CCCHHHH----HHHHHHHHhC
Confidence 0111111121 2221 56766 688888888722 4444443221 1121 0011222 2348999999
Q ss_pred ccccccCCCCcEE-ccHHHHHH
Q 046577 158 CLLLEGDSNKLIS-MHDVVRDV 178 (878)
Q Consensus 158 ~l~~~~~~~~~~~-mHdl~~~l 178 (878)
+++...+ +.|+ .|.++++.
T Consensus 336 gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 336 SWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp TSEEESS--SCEEESSHHHHHH
T ss_pred CCEEecC--CEEEecCHHHHHh
Confidence 9986543 4566 46777764
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.40 E-value=0.77 Score=49.43 Aligned_cols=136 Identities=11% Similarity=-0.006 Sum_probs=76.2
Q ss_pred EEccCCChHHHHHHHHHhc---CCCCCChhhHHHHHHHHHHhC------CChhHHHHHHHHh---c---CCCch---hHH
Q 046577 7 FLINNLNEEEAGRLFKMMA---GDDVENRELKSTAIDVARACG------GLPIALTTVAKAL---R---GKSLH---EWK 68 (878)
Q Consensus 7 ~~l~~L~~~~~~~Lf~~~a---~~~~~~~~~~~~~~~i~~~c~------GlPLai~~lg~~L---~---~k~~~---~W~ 68 (878)
+++++|+.++++++|..++ +... .--.+..+.|+++|+ |.|..+..+.... + +.... .+.
T Consensus 210 i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 210 LHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 8999999999999998775 3211 111467889999999 9997655544321 1 12111 134
Q ss_pred HHHHHhcCCCCCCcCCchhhHHHHHHHHHhcCCCchhHHHHHHhccCC----CCCChhHHHHHHhhcc--ccc-CcchHH
Q 046577 69 NSLRELRTPSMVNFEGVSAETYSSIELSFKYLKGGQLKELFQLCSLMG----NSIPTLKLLKYSIGLG--IFQ-GVNKME 141 (878)
Q Consensus 69 ~~l~~l~~~~~~~~~~~~~~i~~~L~lSy~~L~~~~lk~cFly~~~fp----~~i~~~~li~~w~~~g--~~~-~~~~~e 141 (878)
.+...... ...+.-+++.||.. .+.++..++.+. ..+...++...+.... ... +.-+..
T Consensus 288 ~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (412)
T 1w5s_A 288 KAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYT 353 (412)
T ss_dssp HHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHH
T ss_pred HHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHH
Confidence 34432210 11233456788886 588887787532 2455666555442111 110 111112
Q ss_pred HHHHHHHHHHHHHHhcccccc
Q 046577 142 DARNKLYALVHELRDSCLLLE 162 (878)
Q Consensus 142 ~~~~~~~~~l~~L~~r~l~~~ 162 (878)
. +..++++|++.+++..
T Consensus 354 ~----~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 354 Q----YHIYLKHLTSLGLVDA 370 (412)
T ss_dssp H----HHHHHHHHHHTTSEEE
T ss_pred H----HHHHHHHHHhCCCEEe
Confidence 2 2335899999999864
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.36 E-value=1.9 Score=44.49 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=40.6
Q ss_pred ccEEccCCChHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHh
Q 046577 5 DNFLINNLNEEEAGRLFKMMAGDDVENRELKSTAIDVARACGGLPIALTTVAKAL 59 (878)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L 59 (878)
.++.+.+++.+|..+++.+.+...... --.+..+.++++++|.|-.+..+...+
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 578999999999999999988321111 113667889999999998887766554
No 173
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=65.39 E-value=11 Score=36.35 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=41.3
Q ss_pred ccEEccCCChHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhc
Q 046577 5 DNFLINNLNEEEAGRLFKMMAGDDVENRELKSTAIDVARACGGLPIALTTVAKALR 60 (878)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~GlPLai~~lg~~L~ 60 (878)
..+++++++.+|.++++.+.+.+....- -.+..+.|+++|+|.|..+..+...+.
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4789999999999999999883111111 135678999999999999987765543
No 174
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=47.67 E-value=57 Score=33.91 Aligned_cols=133 Identities=10% Similarity=0.000 Sum_probs=73.0
Q ss_pred ccEEccCCChHHHHHHHHHhcC---C-CCCChhhHHHHHHHHHHhC---CChh-HHHHHHHH--hcC---C-CchhHHHH
Q 046577 5 DNFLINNLNEEEAGRLFKMMAG---D-DVENRELKSTAIDVARACG---GLPI-ALTTVAKA--LRG---K-SLHEWKNS 70 (878)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~---~-~~~~~~~~~~~~~i~~~c~---GlPL-ai~~lg~~--L~~---k-~~~~W~~~ 70 (878)
..+++++++.++..++|.+++. . ...+ ++..+.++++|+ |-|- |+.++... ++. + +..++..+
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~ 266 (384)
T 2qby_B 190 PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKA 266 (384)
T ss_dssp CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHH
T ss_pred CeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 3799999999999999999862 1 2222 245677778887 8776 44444333 221 1 22337777
Q ss_pred HHHhcCCCCCCcCCchhhHHHHHHHHHhcCCCchhHHHHHHhcc-CC-CCCChhHHHHHHhhcccccCcchHHHHHHHHH
Q 046577 71 LRELRTPSMVNFEGVSAETYSSIELSFKYLKGGQLKELFQLCSL-MG-NSIPTLKLLKYSIGLGIFQGVNKMEDARNKLY 148 (878)
Q Consensus 71 l~~l~~~~~~~~~~~~~~i~~~L~lSy~~L~~~~lk~cFly~~~-fp-~~i~~~~li~~w~~~g~~~~~~~~e~~~~~~~ 148 (878)
++... ...+.-+++.|+.+ -|..+..++. +. .++. +.........|. .+ .+.. .+.
T Consensus 267 ~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g~-~~-~~~~----~~~ 324 (384)
T 2qby_B 267 IVDYE--------------QERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFKQ-KP-LSYR----RFS 324 (384)
T ss_dssp HHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTTC-CC-CCHH----HHH
T ss_pred HHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcCC-CC-CCHH----HHH
Confidence 66431 12456678899875 2444433444 11 0110 111222222331 11 1222 233
Q ss_pred HHHHHHHhcccccc
Q 046577 149 ALVHELRDSCLLLE 162 (878)
Q Consensus 149 ~~l~~L~~r~l~~~ 162 (878)
++++.|..++++..
T Consensus 325 ~~l~~L~~~gli~~ 338 (384)
T 2qby_B 325 DIISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCEEE
Confidence 45899999999864
No 175
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=35.80 E-value=23 Score=19.86 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.7
Q ss_pred hCCChhHHHHHHHHhcCC
Q 046577 45 CGGLPIALTTVAKALRGK 62 (878)
Q Consensus 45 c~GlPLai~~lg~~L~~k 62 (878)
-.-+|||+.|.++.++..
T Consensus 8 rrklplavav~agv~~aq 25 (28)
T 2vda_B 8 RRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCTHHHHHHHHTTCCC
T ss_pred cccCchHHHHHHHHhHhh
Confidence 356999999999988753
No 176
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=31.46 E-value=1.1e+02 Score=31.53 Aligned_cols=158 Identities=11% Similarity=-0.024 Sum_probs=84.3
Q ss_pred cEEccCCChHHHHHHHHHhcC---CCCCChhhHHHHHHHHHHh---------CCChhHHH-HHHHHhc-----CCCchhH
Q 046577 6 NFLINNLNEEEAGRLFKMMAG---DDVENRELKSTAIDVARAC---------GGLPIALT-TVAKALR-----GKSLHEW 67 (878)
Q Consensus 6 ~~~l~~L~~~~~~~Lf~~~a~---~~~~~~~~~~~~~~i~~~c---------~GlPLai~-~lg~~L~-----~k~~~~W 67 (878)
.+++.+++.++..+++...+. ... .--.+..+.+++++ +|.|-.+. ++..... +.....+
T Consensus 187 ~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~ 264 (389)
T 1fnn_A 187 VIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAP 264 (389)
T ss_dssp EEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCH
T ss_pred eEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCH
Confidence 689999999999999999872 111 11246778899999 78765443 3332221 2222223
Q ss_pred HHH---HHHhcCCCCCCcCCchhhHHHHHHHHHhcCCCchhHHHHHHhccCC---C--CCChhHHHHHHhh----ccccc
Q 046577 68 KNS---LRELRTPSMVNFEGVSAETYSSIELSFKYLKGGQLKELFQLCSLMG---N--SIPTLKLLKYSIG----LGIFQ 135 (878)
Q Consensus 68 ~~~---l~~l~~~~~~~~~~~~~~i~~~L~lSy~~L~~~~lk~cFly~~~fp---~--~i~~~~li~~w~~----~g~~~ 135 (878)
+.+ .+..... .+.-.++.|+.+ -|..+..++.+. . .+...++...+.. .|...
T Consensus 265 ~~v~~~~~~~~~~--------------~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 329 (389)
T 1fnn_A 265 EDVRKSSKEVLFG--------------ISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP 329 (389)
T ss_dssp HHHHHHHHHHSCC--------------CCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhhh--------------hHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC
Confidence 333 3332211 122245678875 355555555332 1 3444445443322 23211
Q ss_pred CcchHHHHHHHHHHHHHHHHhcccccccCC------CCc---EE----ccHHHHHHHHHHhhcc
Q 046577 136 GVNKMEDARNKLYALVHELRDSCLLLEGDS------NKL---IS----MHDVVRDVARSIACRD 186 (878)
Q Consensus 136 ~~~~~e~~~~~~~~~l~~L~~r~l~~~~~~------~~~---~~----mHdl~~~l~~~~~~~e 186 (878)
- +. ..+..++++|.+++++..... .+. ++ .||++..+...+..+|
T Consensus 330 ~--~~----~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 330 R--VH----SQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp C--CH----HHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred C--CH----HHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 0 11 223456999999999964321 122 22 4677777777666544
No 177
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.86 E-value=89 Score=31.32 Aligned_cols=52 Identities=12% Similarity=0.133 Sum_probs=37.5
Q ss_pred cEEccCCChHHHHHHHHHhcC-CCCCChhhHHHHHHHHHHhCCChh-HHHHHHHHh
Q 046577 6 NFLINNLNEEEAGRLFKMMAG-DDVENRELKSTAIDVARACGGLPI-ALTTVAKAL 59 (878)
Q Consensus 6 ~~~l~~L~~~~~~~Lf~~~a~-~~~~~~~~~~~~~~i~~~c~GlPL-ai~~lg~~L 59 (878)
.+++.+++.++..+++.+.+. ....- -++..+.+++.|+|.|. |+..+....
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQSTV 213 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 689999999999999999872 11111 13567889999999994 555554443
No 178
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.86 E-value=69 Score=25.87 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=21.5
Q ss_pred hcCCCCccEEecCCCCCCCccCcchhcCCccccEEEccc
Q 046577 322 LGQLTKLRLLDLTDCFHLKVIAPNVISSLIRLEELYMCN 360 (878)
Q Consensus 322 i~~L~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~ 360 (878)
|..+++|+.+.+-.+ ++.+....|.++.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 555666666655543 4555555566666666666544
No 179
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=21.06 E-value=2.5e+02 Score=28.71 Aligned_cols=134 Identities=12% Similarity=0.079 Sum_probs=74.2
Q ss_pred ccEEccCCChHHHHHHHHHhcC---C-CCCChhhHHHHHHHHHHhC---CCh-hHHHHHHHHhc-----CCC---chhHH
Q 046577 5 DNFLINNLNEEEAGRLFKMMAG---D-DVENRELKSTAIDVARACG---GLP-IALTTVAKALR-----GKS---LHEWK 68 (878)
Q Consensus 5 ~~~~l~~L~~~~~~~Lf~~~a~---~-~~~~~~~~~~~~~i~~~c~---GlP-Lai~~lg~~L~-----~k~---~~~W~ 68 (878)
..+.+++++.++..+++.+++. . .... .+..+.++++++ |.| .|+.++..... ++. ...++
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~ 270 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVY 270 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 3788999999999999999862 2 1222 245677888887 999 44444433321 222 12266
Q ss_pred HHHHHhcCCCCCCcCCchhhHHHHHHHHHhcCCCchhHHHHHHhc-cCC-C-CCChhHHHHH----HhhcccccCcchHH
Q 046577 69 NSLRELRTPSMVNFEGVSAETYSSIELSFKYLKGGQLKELFQLCS-LMG-N-SIPTLKLLKY----SIGLGIFQGVNKME 141 (878)
Q Consensus 69 ~~l~~l~~~~~~~~~~~~~~i~~~L~lSy~~L~~~~lk~cFly~~-~fp-~-~i~~~~li~~----w~~~g~~~~~~~~e 141 (878)
.+++... ...+.-++..|+.+ -+..+...+ ++. + .+...++.+. ....| +.+ .+.
T Consensus 271 ~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~- 332 (387)
T 2v1u_A 271 SARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LEH-VTL- 332 (387)
T ss_dssp HHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CCC-CCH-
T ss_pred HHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CCC-CCH-
Confidence 6655421 12455678899986 244444344 442 2 3444433332 22233 111 111
Q ss_pred HHHHHHHHHHHHHHhcccccc
Q 046577 142 DARNKLYALVHELRDSCLLLE 162 (878)
Q Consensus 142 ~~~~~~~~~l~~L~~r~l~~~ 162 (878)
..+..++++|...+++..
T Consensus 333 ---~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 333 ---RRVSGIISELDMLGIVKS 350 (387)
T ss_dssp ---HHHHHHHHHHHHTTSEEE
T ss_pred ---HHHHHHHHHHHhCCCeEE
Confidence 223345889999998864
Done!