Your job contains 1 sequence.
>046578
MAVTSIWSSSPTHSTLPSLKTLHPLPPPSLSSSPSSCSNKYNININLVTNEALALHPVIE
SATDAAALASAAVRTAKDAVSFANGAEEVCFDDGECESVLKMMRRRSRRKKRTKESDFLD
KENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLL
RGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRR
LRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPER
MVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI
ALTKLQQTNILNNLKVYMV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 046578
(379 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 777 3.4e-77 1
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 412 1.6e-38 1
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 411 2.1e-38 1
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 405 8.9e-38 1
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 406 1.5e-37 1
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 393 1.7e-36 1
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 396 2.2e-36 1
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 393 2.2e-36 1
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 391 2.7e-36 1
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 391 1.1e-35 1
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 387 2.0e-35 1
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 382 4.0e-35 1
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 379 5.1e-35 1
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 382 7.0e-35 1
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 380 1.2e-34 1
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 378 2.2e-34 1
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 378 2.2e-34 1
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 371 1.3e-33 1
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 357 1.1e-32 1
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 363 1.5e-32 1
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 350 6.0e-32 1
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 348 9.8e-32 1
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 352 1.0e-31 1
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 342 4.2e-31 1
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 331 6.2e-30 1
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 330 2.9e-29 1
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 319 1.2e-28 1
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 312 1.5e-27 1
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 304 1.4e-26 1
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 284 4.2e-24 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 233 1.5e-19 1
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 228 5.1e-19 1
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 228 2.9e-18 1
TIGR_CMR|APH_0759 - symbol:APH_0759 "RNA polymerase sigma... 211 3.5e-17 1
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 222 5.7e-17 1
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 209 1.3e-16 1
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 173 7.6e-15 2
UNIPROTKB|P50511 - symbol:rpoH "RNA polymerase sigma-32 f... 167 2.6e-14 2
TIGR_CMR|VC_0150 - symbol:VC_0150 "RNA polymerase sigma-3... 167 2.6e-14 2
TIGR_CMR|CPS_0161 - symbol:CPS_0161 "RNA polymerase sigma... 195 3.8e-14 1
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 166 4.3e-14 2
UNIPROTKB|Q9KQD4 - symbol:VC_2066 "RNA polymerase sigma f... 178 3.8e-13 1
TIGR_CMR|VC_2066 - symbol:VC_2066 "RNA polymerase sigma f... 178 3.8e-13 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 156 1.2e-12 2
TIGR_CMR|CBU_1909 - symbol:CBU_1909 "RNA polymerase sigma... 184 1.5e-12 1
TIGR_CMR|CHY_2055 - symbol:CHY_2055 "RNA polymerase sigma... 179 2.1e-12 1
UNIPROTKB|O32728 - symbol:O32728 "RNA polymerase sigma fa... 172 1.5e-11 1
UNIPROTKB|O83707 - symbol:TP_0709 "RNA polymerase sigma f... 173 1.9e-11 1
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 175 2.5e-11 1
UNIPROTKB|P0AEM6 - symbol:fliA "RNA polymerase, sigma 28 ... 162 2.4e-10 1
TIGR_CMR|CHY_1013 - symbol:CHY_1013 "RNA polymerase sigma... 157 1.9e-09 1
TIGR_CMR|BA_4294 - symbol:BA_4294 "RNA polymerase sigma-F... 156 2.4e-09 1
TIGR_CMR|BA_4043 - symbol:BA_4043 "RNA polymerase sigma-2... 123 3.3e-09 2
UNIPROTKB|Q9K5J6 - symbol:sigB "RNA polymerase sigma-B fa... 154 4.9e-09 1
TIGR_CMR|BA_0992 - symbol:BA_0992 "RNA polymerase sigma-B... 154 4.9e-09 1
TIGR_CMR|GSU_3053 - symbol:GSU_3053 "RNA polymerase sigma... 153 5.5e-09 1
TIGR_CMR|CHY_2056 - symbol:CHY_2056 "RNA polymerase sigma... 122 6.7e-09 2
TIGR_CMR|CPS_1519 - symbol:CPS_1519 "motility sigma facto... 146 3.3e-08 1
TIGR_CMR|BA_4042 - symbol:BA_4042 "RNA polymerase sigma-G... 146 4.9e-08 1
TIGR_CMR|SO_3210 - symbol:SO_3210 "RNA polymerase sigma-2... 143 7.4e-08 1
UNIPROTKB|Q7D5S2 - symbol:sigF "Alternative RNA polymeras... 142 1.5e-07 1
TIGR_CMR|CHY_0617 - symbol:CHY_0617 "RNA polymerase sigma... 111 4.9e-07 2
TIGR_CMR|CHY_1959 - symbol:CHY_1959 "RNA polymerase sigma... 133 1.7e-06 1
UNIPROTKB|Q884V7 - symbol:fliA "Motility sigma factor Fli... 131 2.5e-06 1
UNIPROTKB|Q48GG2 - symbol:fliA "RNA polymerase sigma fact... 128 5.1e-06 1
TIGR_CMR|CHY_0143 - symbol:CHY_0143 "RNA polymerase sigma... 115 4.1e-05 1
TIGR_CMR|CHY_2333 - symbol:CHY_2333 "RNA polymerase sigma... 105 0.00040 2
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 150/244 (61%), Positives = 196/244 (80%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ILC+ +E++E+I R YR LVVSIATGYQGKGL+L+DLIQEGSIGLLRGA+RF+P+RGYK
Sbjct: 171 EILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYK 230
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTYVYWWIKQAI+RAIA+KSR ++LPGSM + AK+AEA+NVL+R+LRR P+ EIAE
Sbjct: 231 LSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEH 290
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXX 313
LN++VS VRLA+ER+R P+SLD + G MT+Q+I+ GPDET PE MV
Sbjct: 291 LNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQ 350
Query: 314 XXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+ RE+ +L L+FGL+G+TP+S +EIG+ L LSRER+RQI GIAL KL+ + +N+
Sbjct: 351 LLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVND 410
Query: 374 LKVY 377
LK+Y
Sbjct: 411 LKIY 414
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 93/246 (37%), Positives = 146/246 (59%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403
Query: 255 NIHVSTVRLAIER-TRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXX 313
+I V L I++ R PISLD + D G + D I + + V
Sbjct: 404 DITPEKV-LEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQS 462
Query: 314 XXXTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 463 VLDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQ 521
Query: 373 NLKVYM 378
L+ Y+
Sbjct: 522 VLRDYL 527
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 88/240 (36%), Positives = 136/240 (56%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ ++ + LVVSIA Y G+G+ DLIQEG++GLL+ ++F+ +GYK STY
Sbjct: 130 DEEAKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYA 189
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA+ + I
Sbjct: 190 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISE 249
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTL 318
VR ++ + P+SL+ + + + D + PD P TL
Sbjct: 250 DKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTL 309
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 310 TEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 369
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 89/241 (36%), Positives = 133/241 (55%)
Query: 138 KERESQER-IIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLST 196
++ E+ R ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K ST
Sbjct: 81 RDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFST 140
Query: 197 YVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNI 256
Y WWI+QAI R +A++SRTIRLP + V K+A + + L R TD E+A I
Sbjct: 141 YATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGI 200
Query: 257 HVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXX 316
+ + +E +R P+SLD V + D I + E V
Sbjct: 201 PIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLA 260
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKV 376
TL ERE ++RL FGLD P + +IG+L LSRER+RQI ++KL+ + L+
Sbjct: 261 TLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRS 320
Query: 377 Y 377
Y
Sbjct: 321 Y 321
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 406 (148.0 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 93/261 (35%), Positives = 143/261 (54%)
Query: 119 LDKENGELDYNLVKYKILCKER---ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEG 175
L EN ++ + KI ER ++++ +I++ LVVSIA Y +GL DL+QEG
Sbjct: 359 LSGENNLTEFKALVTKIQKHERAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEG 418
Query: 176 SIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANN 235
+IGL++ +F+ +RGYK STY WW++QAI RAIA+++RTIR+P M V KI
Sbjct: 419 NIGLMKAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLR 478
Query: 236 VLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDE 295
+ + R PT E++ LNI+V +R ++ + P+SL+ + D T D I
Sbjct: 479 QMLHEMGREPTLEELSARLNINVDKIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRA 538
Query: 296 TMPERMVXXXXXXXXXXXXXXTLSEREADILRLHFGLD-GQTPVSCKEIGRLLSLSRERI 354
PE TL+ +E ILR+ FG+ G + +E+G+L +++RERI
Sbjct: 539 VKPEDAAVLADLREITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRERI 598
Query: 355 RQIRGIALTKLQQTNILNNLK 375
RQI AL KL+ + L+
Sbjct: 599 RQIEAKALRKLRHPSRARKLR 619
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 84/240 (35%), Positives = 136/240 (56%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 133 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYA 192
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 193 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAP 252
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTL 318
VR ++ + P+SL+ + + + D I + T P TL
Sbjct: 253 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTL 312
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 313 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 396 (144.5 bits), Expect = 2.2e-36, P = 2.2e-36
Identities = 91/238 (38%), Positives = 133/238 (55%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R QE I + R LVVSIA Y +GL DL+QEG+IGL++ +F+ +RGYK STY
Sbjct: 389 RAKQEMIKANLR-LVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTYAT 447
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WW++QAI RAIA+++RTIR+P M V KI + + R PT E++ LNI+V
Sbjct: 448 WWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEIGREPTLEELSARLNINVE 507
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLS 319
+R ++ + P+SL+ + D T D I PE TL+
Sbjct: 508 KIRKVMKIVKDPVSLESPIGDDDSSTFGDCIEDKRAVKPENAAVLADLREITTKVLSTLT 567
Query: 320 EREADILRLHFGLDGQTPV--SCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLK 375
+E ILR+ FG+ G++ + +E+GRL +++RERIRQI AL KL+ + L+
Sbjct: 568 PKEERILRMRFGI-GKSGKDHTLEEVGRLFNVTRERIRQIEAKALRKLRHPSRARKLR 624
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 393 (143.4 bits), Expect = 2.2e-36, P = 2.2e-36
Identities = 84/241 (34%), Positives = 134/241 (55%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
K + ++ ++ + LVVSIA Y +GL DLIQEG+IGL++ +F +RGYK STY
Sbjct: 336 KSKLAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTY 395
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
WWI+QAI RAIA+++RTIR+P M + K+ + L + + R P+ EIAE +N+
Sbjct: 396 ATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQEIGREPSPEEIAERMNLP 455
Query: 258 VSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXT 317
+ VR ++ + PISL+ + + + D I P V T
Sbjct: 456 LDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKGVVSPLEAVIKANLSEQTARVLAT 515
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
L+ RE +LR+ FG+ ++ + +E+G+ ++RERIRQI AL KL+ + L+ +
Sbjct: 516 LTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRAKKLRSF 575
Query: 378 M 378
+
Sbjct: 576 V 576
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 91/260 (35%), Positives = 144/260 (55%)
Query: 119 LDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIG 178
L++ L Y L +I K E +I++ LVVS+A + G+G+ L DLIQEG+IG
Sbjct: 262 LERHEASLKYYLDNLEIDAKRAE--RHLIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIG 319
Query: 179 LLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLS 238
L+R ++F+ RG+K STY WWI+QAI RAIA+++RTIR+P M + K+ + LS
Sbjct: 320 LIRAVEKFDFHRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLLSISRQLS 379
Query: 239 RRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMP 298
++L R PT EIA +++ VR + ++ P+SL+ + + + D I + P
Sbjct: 380 QKLGREPTPDEIAVEMDLPPEKVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAP 439
Query: 299 ERMVXXXXXXXXXXXXXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIR 358
+L+ RE +L+L FGL+ + +E+G+ +++RERIRQI
Sbjct: 440 PDAASRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIE 499
Query: 359 GIALTKLQQTNILNNLKVYM 378
AL KL+ + LK Y+
Sbjct: 500 AKALRKLRHPSRSRKLKDYL 519
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 391 (142.7 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 84/242 (34%), Positives = 134/242 (55%)
Query: 138 KE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLST 196
KE R++++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK ST
Sbjct: 417 KEARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 476
Query: 197 YVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNI 256
Y WWI+QAI R+IA+++RTIR+P M + K+ + + R PT E+AE L +
Sbjct: 477 YATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQM 536
Query: 257 HVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXX 316
+ VR ++ + PISL+ + D + D I + +P
Sbjct: 537 PLEKVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLA 596
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKV 376
+L+ RE +LR+ FG+ T + +E+G+ S++RERIRQI AL KL+ + L+
Sbjct: 597 SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRS 656
Query: 377 YM 378
++
Sbjct: 657 FL 658
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 387 (141.3 bits), Expect = 2.0e-35, P = 2.0e-35
Identities = 82/241 (34%), Positives = 132/241 (54%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
K R +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY
Sbjct: 373 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 432
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
WWI+QAI R+IA+++RTIR+P M + K+ + + + + R PT E+AE + +
Sbjct: 433 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGREPTPEELAERMVMP 492
Query: 258 VSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXT 317
+R ++ + PIS++ + D + D I +P
Sbjct: 493 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGSGELPVDSATSENLKGATHEVLAG 552
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
L+ REA +LR+ FG+D T + +E+G+ ++RERIRQI AL KL+ + LK +
Sbjct: 553 LTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLKSF 612
Query: 378 M 378
+
Sbjct: 613 L 613
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 382 (139.5 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 82/249 (32%), Positives = 138/249 (55%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ + LCK++ +I+S LV+SIA YQG G++L+DL+QEG GL+RGA++F+ +
Sbjct: 326 IHHGTLCKDK-----MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATK 380
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ ++++++SR IRLP M ++ EA L + P + EI
Sbjct: 381 GFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEI 440
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXX 310
AE + + + + + P SLD + + ++I P+ E ++
Sbjct: 441 AEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQD 500
Query: 311 XXXXXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
+L RE ++R FG++ + +EIG ++ +SRER+RQI A KL+
Sbjct: 501 LDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKR 560
Query: 371 LNNLKVYMV 379
N+L+ Y+V
Sbjct: 561 NNHLQQYLV 569
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 81/238 (34%), Positives = 129/238 (54%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R S+E++I + LVV IA YQ +GL+ +DL+QEGS+GL++ ++F P+ G + +TY Y
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 364
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q+I ++I SRTIRLP ++ ++ K++EA + P+ E+A + +
Sbjct: 365 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTE 424
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLS 319
+ + TR P+S+ + T Q+I P P V LS
Sbjct: 425 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLS 484
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
+E I++L FG+DG S EIG + LS+ER+RQ+ AL +L+Q + L Y
Sbjct: 485 PKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 382 (139.5 bits), Expect = 7.0e-35, P = 7.0e-35
Identities = 81/241 (33%), Positives = 132/241 (54%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
K R +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY
Sbjct: 371 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 430
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
WWI+QAI R+IA+++RTIR+P M + K+ + + + + R PT E+AE + +
Sbjct: 431 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMP 490
Query: 258 VSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXT 317
+R ++ + PIS++ + D + D I +P
Sbjct: 491 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG 550
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
L+ REA +LR+ FG+D T + +E+G+ ++RERIRQI AL KL+ + L+ +
Sbjct: 551 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 610
Query: 378 M 378
+
Sbjct: 611 L 611
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 380 (138.8 bits), Expect = 1.2e-34, P = 1.2e-34
Identities = 81/241 (33%), Positives = 132/241 (54%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
K R +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY
Sbjct: 374 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 433
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
WWI+QAI R+IA+++RTIR+P M + K+ + + + + R P+ E+AE + +
Sbjct: 434 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPSPEELAERMMMP 493
Query: 258 VSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXT 317
+R ++ + PIS++ + D + D I +P
Sbjct: 494 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLKSATHEVLAG 553
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
L+ REA +LR+ FG+D T + +E+G+ ++RERIRQI AL KL+ + LK +
Sbjct: 554 LTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEILKSF 613
Query: 378 M 378
+
Sbjct: 614 L 614
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 378 (138.1 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 80/241 (33%), Positives = 131/241 (54%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
K R +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY
Sbjct: 383 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 442
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
WWI+QAI R+IA+++RTIR+P M + K+ + + + + R P E+AE + +
Sbjct: 443 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMP 502
Query: 258 VSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXT 317
+R ++ + PIS++ + D + D I +P
Sbjct: 503 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAG 562
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
L+ REA +LR+ FG+D T + +E+G+ ++RERIRQI AL KL+ + L+ +
Sbjct: 563 LTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 622
Query: 378 M 378
+
Sbjct: 623 L 623
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 378 (138.1 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 80/241 (33%), Positives = 131/241 (54%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
K R +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY
Sbjct: 383 KARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 442
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
WWI+QAI R+IA+++RTIR+P M + K+ + + + + R P E+AE + +
Sbjct: 443 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMP 502
Query: 258 VSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXT 317
+R ++ + PIS++ + D + D I +P
Sbjct: 503 EDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKAATRDVLAG 562
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
L+ REA +LR+ FG+D T + +E+G+ ++RERIRQI AL KL+ + L+ +
Sbjct: 563 LTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSF 622
Query: 378 M 378
+
Sbjct: 623 L 623
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 371 (135.7 bits), Expect = 1.3e-33, P = 1.3e-33
Identities = 86/242 (35%), Positives = 137/242 (56%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++ R+ +S LVVSIA Y +GL DLIQEG+IGL++ +F +RGYK STY W
Sbjct: 380 EAKGRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATW 439
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRR---MPTDSEIAEMLNIH 257
WI+QAI RAIA+++RTIR+P M+ I + N ++ L++ P S IA+ + +
Sbjct: 440 WIRQAISRAIADQARTIRIP---IHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLS 496
Query: 258 VSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXT 317
V V+ I+ T+ PISL+ + + D + + P +
Sbjct: 497 VDKVKQVIKITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQ 556
Query: 318 LSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKV 376
L++RE ++R+ FGL D ++ + +EIG+ L+++RER+RQI A+ KL+ + LK
Sbjct: 557 LNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKN 616
Query: 377 YM 378
Y+
Sbjct: 617 YI 618
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 81/238 (34%), Positives = 129/238 (54%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ +++R+I S LVV I+ Y +GL+L DLI+EG++GL+R ++F+PERG++ STY
Sbjct: 88 DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 147
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+Q I RA+ N++RTIRLP + + LS+RL PT EIA L+ V
Sbjct: 148 TWWIRQTIERALMNQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPV 207
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTL 318
V + S+D + G + DI+P PE L
Sbjct: 208 DDVTKMLRLNERISSVDTPIGGDGDKALLDILPDSHNADPEFSTQDDDIRESLLNWLDEL 267
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKV 376
+ ++ ++L FGL G P + +E+GR ++L+RER+RQI+ L +L++ + L +
Sbjct: 268 NPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQGLNM 325
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 363 (132.8 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 79/241 (32%), Positives = 128/241 (53%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
K R +++ +I + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY
Sbjct: 454 KSRRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTY 513
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
WWI+QAI R+IA+++RTIR+P M + K+ + + + T E+ +++
Sbjct: 514 ATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGIEATPEELGRRMDMP 573
Query: 258 VSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXT 317
VR ++ + PIS++ + + + D I + P T
Sbjct: 574 EEKVRKVLKIAKEPISMETPIGEDEDSNLGDFIEDINMESPVDFATSAGLMEATREILST 633
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
L+ REA +LR+ FG+D T + +E+G+ ++RERIRQI AL KL+ + L +
Sbjct: 634 LTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAEKLHSF 693
Query: 378 M 378
+
Sbjct: 694 I 694
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 81/238 (34%), Positives = 127/238 (53%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ S++R+I S LVV IA Y +GL L DLI+EG++GL+R ++F+PERG++ STY
Sbjct: 53 DEPSRKRMIESNLRLVVKIARRYNNRGLPLLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 112
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+Q I RAI N++RTIRLP + + A+ L ++L PT +IA+ L+ V
Sbjct: 113 TWWIRQTIERAIMNQTRTIRLPIHVVKELNIYLRASRELIQKLDHEPTAEDIAQHLDRPV 172
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTL 318
+ V + S+D + D+I T PE + L
Sbjct: 173 ADVNKMLRLNERIASVDTPFAGESDKALLDVIADEKSTGPESDLQSEDMSNNIIHWLNEL 232
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKV 376
+ ++ ++L FGL G + + +GR + L+RER+RQI+ AL +L+ NL +
Sbjct: 233 NTKQREVLARRFGLLGYEASTLENVGREIGLTRERVRQIQVEALKRLRDILSQQNLSI 290
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 78/226 (34%), Positives = 124/226 (54%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+S+ R+I S LVV IA Y +GL+L DLI+EG++GL+R ++F+PERG++ STY W
Sbjct: 85 KSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW 144
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAI N++RTIRLP + + L+++L PT EIAE L +
Sbjct: 145 WIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAEEIAEKLQVSSVD 204
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLSE 320
V ++ S+D + + D++ D P+ V L+
Sbjct: 205 VSRMLKLNEKITSVDVPLGGDNDKALLDVLADDDNVGPDYKVQDEDISNSVVKWLNELNT 264
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
++ ++L FGL G P + +++G + L+RER+RQI+ AL +L+
Sbjct: 265 KQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLR 310
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 352 (129.0 bits), Expect = 1.0e-31, P = 1.0e-31
Identities = 82/240 (34%), Positives = 131/240 (54%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +E++ RS LV+ +A Y+G GL ++DL+Q+G GL++ ++FNP +G + TY Y
Sbjct: 331 RRCREKMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAY 390
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q+I ++I SR IRLP S+ ++ K+ +A PT++ +A I +
Sbjct: 391 WWIRQSIKKSIFKNSRLIRLPESVYALLRKVGKARMECIME-GEQPTNANVARRAGITIE 449
Query: 260 TVRLAIERTRHPISLDGAV-TDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTL 318
+ +TR P S+ V +D G +T Q+I P+ P+ V L
Sbjct: 450 KLAKLRAKTRKPRSMQDHVWSDEG-VTFQEITEDPNVEPPDLSVDRMMMRQQVRDFLGIL 508
Query: 319 SEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
S RE +I+ FG+ DG+ P + IG + LS+ERIRQ++ AL KL+++ L VY
Sbjct: 509 SPREKEIIEHRFGIHDGE-PKTLHVIGDMFGLSKERIRQLQNRALEKLKRSASLQGFDVY 567
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 83/234 (35%), Positives = 124/234 (52%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
S+ R+I S LVV IA Y +GL+L DLI+EG++GL+R ++F+PERG++ STY WW
Sbjct: 90 SRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWW 149
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAI N++RTIRLP + + LS +L P+ EIAE L+ V V
Sbjct: 150 IRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDV 209
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLSER 321
+ S+D + + DI+ E PE L+ +
Sbjct: 210 SRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAK 269
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ---QTNILN 372
+ ++L FGL G + +++GR + L+RER+RQI+ L +L+ QT LN
Sbjct: 270 QREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLN 323
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 75/229 (32%), Positives = 125/229 (54%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++ +++++I S LVV IA Y +GL DLI+EG++GL++ +RF + + STY
Sbjct: 89 DKAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERFKLSKECRFSTYA 148
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+Q+I RA+ N+SRTIRLP ++ + K+ + L +RL R P+ E+A + ++
Sbjct: 149 TWWIRQSIERALVNQSRTIRLPVHVSDDINKMLKITRELVQRLNREPSVKEVATEMKVNS 208
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTL 318
+ VR + + S++ + + + D I P ++ +L
Sbjct: 209 AYVRRLMVLLKKTYSIERPMGENSDYFLIDTIEDTSTVSPAVLLEDLNKYEIVSKWFASL 268
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
SE E IL L FGL+ + P + IGR ++RERIRQI +L KL++
Sbjct: 269 SENEQTILTLRFGLEDKEPQTLDTIGRSFGVTRERIRQIEAKSLEKLRK 317
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 330 (121.2 bits), Expect = 2.9e-29, P = 2.9e-29
Identities = 79/239 (33%), Positives = 130/239 (54%)
Query: 143 QERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWI 202
++ +++S RSLV+ +A Y+G G++ +DLIQ G +G+L+GA+RF+ RGYK STYV +WI
Sbjct: 333 RDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWI 392
Query: 203 KQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR-RMPTDSEIAEMLNIHVSTV 261
++++ ++ +R + +P S+ + I +A L + D EIA++ V +
Sbjct: 393 RKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGHSVKKI 452
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM--PERMVXXXXXXXXXXXXXXTLS 319
R A + + S+D V D C T + + PD TM PE V L
Sbjct: 453 RAANQCLKVVGSIDKKVGD--CFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLE 510
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE ++ L +GL P S +EIG+LL +S+E IR+I A+ KL+ +L+ Y+
Sbjct: 511 PREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 69/226 (30%), Positives = 124/226 (54%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++++++I + LVV IA Y +GL DLI+EG++GLL ++F+PERG++ STY W
Sbjct: 112 KARKQMIEANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATW 171
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAI N+SRT+RLP + + L++ + T ++A +++ V
Sbjct: 172 WIRQTIERAIMNQSRTVRLPIHVIKELNVYLRTAKKLTQEVDHEATPEDVAHLIDKPVQE 231
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLSE 320
+R ++ S+D +++ G ++ D + + P R++ L E
Sbjct: 232 IRRIMDLAPSATSIDVPISEDGQKSLVDTLADDNNIDPARLIQNVDLQDHIERWLAQLDE 291
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
R +++ L FGL + + +G+ + L+RER+RQI+ AL +L+
Sbjct: 292 RHREVVILRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDALQQLR 337
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 312 (114.9 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 82/231 (35%), Positives = 122/231 (52%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++ S LV+SIA Y G + DL+Q G IGLLRG ++F+ +G+++STYVYWW
Sbjct: 259 AREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWW 318
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q + RA+ + SRT+RLP + + I A L + P+ IAE LN+ V
Sbjct: 319 IRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQEK-GITPSIDRIAESLNMSQKKV 377
Query: 262 RLAIERTRHPISLD-GAVTDRGCM---TMQDIIPGPD-ETMP-ERMVXXXXXXXXXXXXX 315
R A E SLD A + T I E P
Sbjct: 378 RNATEAVSKVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLALKEEVSKLIS 437
Query: 316 XTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
TL ERE +I+RL++GLD + ++ ++I + + LSRER+RQ+ +AL KL+
Sbjct: 438 ATLGEREKEIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGLVALEKLK 487
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 304 (112.1 bits), Expect = 1.4e-26, P = 1.4e-26
Identities = 87/243 (35%), Positives = 122/243 (50%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E + S LV+SIA Y G+ L DLIQ G IGLLRG ++F+ RG+++STYVYWW
Sbjct: 276 AREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWW 335
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q + RA+A S+T RLP + + I A L + PT IA LNI V
Sbjct: 336 IRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQ-GIAPTIENIAGSLNISEKKV 394
Query: 262 RLAIERTRHPISLDGAVTD--RGCM--TMQDIIPGPDETM-P-ERMVXXXXXXXXXXXXX 315
A E +SLD G T+ I + P
Sbjct: 395 LNATEAVNKVLSLDQQAFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLN 454
Query: 316 XTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLK 375
TL+ERE DI+RL+ G+ G+ + ++I R LSRER+RQ+ IA+ KL+ NL+
Sbjct: 455 STLNERERDIIRLYHGI-GKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLE 513
Query: 376 VYM 378
+
Sbjct: 514 ALL 516
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 284 (105.0 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 86/263 (32%), Positives = 125/263 (47%)
Query: 119 LDKENGELDYNLVKY---KI---LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLI 172
L+K G +DY + + K+ L ++ R++ + LV+SIA Y +G+ DLI
Sbjct: 333 LEKNEG-MDYRSISFLTRKVATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLI 391
Query: 173 QEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAE 232
QEG+IGL++ +F+ RG+K STY WW +QAI RAIA+ +R P + K+
Sbjct: 392 QEGNIGLMKAVDKFDHRRGHKFSTYATWWCRQAITRAIADCGSIVRKPVHIHETANKVMR 451
Query: 233 ANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAV-TDRGCMTMQDIIP 291
L R PT EIA +L I V+ +++ + PISL+ V D + D I
Sbjct: 452 TRRRLYNLNGREPTVEEIANLLKISPDKVKKSLKVNQDPISLESPVGDDSNSGSFGDFIE 511
Query: 292 GPDETMPERMVXXXXXXXXXXXXXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSR 351
+ +V LS RE ILR FGL S ++ L SL
Sbjct: 512 DKNAVSQVDVVLSKNLRKVLDEALAMLSPREEKILRYRFGLCNSVH-SPEDEHYLKSL-- 568
Query: 352 ERIRQIRGIALTKLQQTNILNNL 374
+I RG LT L+Q IL N+
Sbjct: 569 -KIDLNRGTNLT-LEQVGILYNV 589
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 77/255 (30%), Positives = 120/255 (47%)
Query: 125 ELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
E +Y L K + ++ ES +++ S+ L IA GY+G GL ++I E ++GL++ K
Sbjct: 32 EEEYMLAKRWVEEQDAESAHKMVTSHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVK 91
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAG--MVAKIAEAN---NVLSR 239
RF+PE+G++L+TY WWI+ AI I ++L + A + + +A L
Sbjct: 92 RFDPEKGFRLATYAMWWIRAAIQEYILRSWSLVKLGTTSAQKKLFFNLRKAKAKIGALEE 151
Query: 240 RLRRMPTDSEIAEMLNIHVSTVRLAIERTRH--PISLDGAVTDRGCMTMQ--DIIPGPDE 295
R + IA L + V +++ R SL+ V G TMQ D + D
Sbjct: 152 GDLRPENVARIAHDLGVSEDDV-ISMNRRMSGGDASLNATVGSEGEGTMQWQDWLEDEDA 210
Query: 296 TMP---ERMVXXXXXXXXXXXXXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRE 352
E L+ERE D+L LD QT V+ +++ ++SRE
Sbjct: 211 DQAADYEARDELEARRELLASALDVLNEREKDVLTQRRLLD-QT-VTLEDLSAQYNVSRE 268
Query: 353 RIRQIRGIALTKLQQ 367
RIRQI A KLQ+
Sbjct: 269 RIRQIEVRAFEKLQK 283
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 66/235 (28%), Positives = 113/235 (48%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
K+ E+ +I S VV IA Y+ GL + DLIQEG++GL+ ++FNP +G +L +Y
Sbjct: 41 KDLEAAHSLITSNLRFVVKIAAEYRSYGLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISY 100
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAG--MVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
WWI+ I I + +++ + A + K+ +A N + + L A L+
Sbjct: 101 AVWWIRAYIQNHIISAWSLLKIGTTQAQKKLFFKLNQAKNAI-KGLTGTDDIEATATSLH 159
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIP----GPDETMPERMVXXXXXXXXX 311
+ S V +R R LD + + +T+ + + ++T+ E +
Sbjct: 160 VKESEVLEMDQRMRGDFYLDAEIKNGDGLTILETLADERQNQEDTLAE-LQESELLKQHI 218
Query: 312 XXXXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
L+E+E I+ D TP++ +EI S+SRER+RQI AL K++
Sbjct: 219 AGALGKLNEKERFIVEQRVTAD--TPLTLQEIADRFSISRERVRQIEEAALRKIK 271
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 228 (85.3 bits), Expect = 2.9e-18, P = 2.9e-18
Identities = 67/245 (27%), Positives = 114/245 (46%)
Query: 140 RESQERIIRSYRSLVVSIATGY---QGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLST 196
R ++ ++I+ LV+ Y D+ Q G+ GL+ RF P+RG+++ST
Sbjct: 261 RAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRIST 320
Query: 197 YVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNI 256
Y +WI+ +I+RAI + T R P +M +I A L+ L R PT+ E+ + + +
Sbjct: 321 YALFWIRHSIVRAITLSNFT-RFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGL 379
Query: 257 HVSTVRLAIERTRHPISLDGAVTDRGCMTMQDII---PGPDETMPERMVXXXXXXXXXXX 313
+ R + TR SL R +T +++I D +
Sbjct: 380 SPARYRDVVRMTRPTYSLHA----RNRVTQEELINEVTDDDAIGVDTSSHNTLLRLAIDD 435
Query: 314 XXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L +E+ ++R FGLDG+ + EI L++SRE +R+ AL KL+ +
Sbjct: 436 LLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYELKALMKLKHPTRVEY 495
Query: 374 LKVYM 378
L+ YM
Sbjct: 496 LRRYM 500
>TIGR_CMR|APH_0759 [details] [associations]
symbol:APH_0759 "RNA polymerase sigma-32 factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:CLSK749586 RefSeq:YP_505338.1 ProteinModelPortal:Q2GJW3
STRING:Q2GJW3 GeneID:3930206 KEGG:aph:APH_0759 PATRIC:20950212
OMA:ADTHRET BioCyc:APHA212042:GHPM-775-MONOMER Uniprot:Q2GJW3
Length = 289
Score = 211 (79.3 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 69/242 (28%), Positives = 115/242 (47%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
+++ S+ LVV +A G++ GL L +LI EG+IGL++ K+FNPE G++LSTY WWIK
Sbjct: 50 KLVTSHLRLVVKVAMGFRSYGLPLMELIMEGNIGLMQAVKKFNPELGFRLSTYAIWWIKA 109
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNI--HVSTVR 262
+I I +R+ + A K+ + + RR+ + +++ I T
Sbjct: 110 SIKDYILRSWSCMRIGTTQAQK--KLFFSLRKIKRRILGCSASASQSDIRAIAEECGTSE 167
Query: 263 LAIERT-RHPISLDGAVTDRGCMT----MQDIIP--GPD-ETMPERMVXXXXXXXXXXXX 314
+E R + D +++D+ C +QD+IP P+ E M
Sbjct: 168 KEVESMDRFFSNRDISLSDKVCCESGTELQDLIPCSSPNQEVMYLSHEESVMKDQMVKEA 227
Query: 315 XXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
TL ER DI L + P + + + +S+ERIRQI + +K++ N
Sbjct: 228 LSTLDERHRDIFSRR-KLK-EHPDTLETLSEEYGVSKERIRQIELQSFSKVRSFVNANRY 285
Query: 375 KV 376
K+
Sbjct: 286 KI 287
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 222 (83.2 bits), Expect = 5.7e-17, P = 5.7e-17
Identities = 73/264 (27%), Positives = 126/264 (47%)
Query: 124 GELDYNL--VKYKILCKERESQERIIRSYRSLVVSIATGYQGK---GLSLKDLIQEGSIG 178
GE++ VK KI R ++ ++I+ LV+ + Y + G +DL Q G G
Sbjct: 260 GEINMTAGEVKKKIEIG-RAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRG 318
Query: 179 LLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLS 238
L+ RF P+R ++LSTY +WI+ AIIR++ + T R+P + + +I +A L
Sbjct: 319 LITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFT-RVPFGLESVRVEIYKAKTELW 377
Query: 239 RRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPG---PDE 295
+ R PT+ E+ E L I R + + +SL+ + +T ++ I G D
Sbjct: 378 FEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNS----KHSVTQEEFINGITDVDG 433
Query: 296 TMPERMVXXXXXXXXXXXXXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIR 355
+L +E+ ++R +GLDG+ + EI L++SRE +R
Sbjct: 434 VGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVR 493
Query: 356 QIRGIALTKLQQTNILNNLKVYMV 379
+ AL KL+ ++ L+ Y+V
Sbjct: 494 KHEVKALMKLKHQARVDYLRQYIV 517
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 209 (78.6 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 60/252 (23%), Positives = 113/252 (44%)
Query: 125 ELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
E + L+ + ++ + +R++ +Y LVV + ++ G L DL EG+IGL++ K
Sbjct: 29 EEERELIDRWFVHRDISAAQRLVEAYLRLVVKVTVRFRNYGFPLMDLASEGNIGLMKAIK 88
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGM------VAKIAEANNVLS 238
FNP G+ ++TY WWIK AI + +++ G+ A + K+ + +V
Sbjct: 89 NFNPTLGHGIATYAIWWIKAAINEYVIRSWSMVKI-GTTAAQRRLFFNLRKLKNSGSVAG 147
Query: 239 RRLRRMPTDSEIAEMLNIHVSTVRLAIER--TRHPISLDGAVTDRGCMTMQDIIPGPDET 296
L I+E+L + + V +ER +SL+ + + + D++P P+
Sbjct: 148 --LDENQVVKRISEILAVSKNDVE-EMERILNARDVSLNMQLGEDDSSEVHDLVPFPEAN 204
Query: 297 MPERMVXXXXXXXXXXXXXXTLSEREADILRLHFGLD-GQTPVSCKEIGRLLSLSRERIR 355
++ + EA + P + KE+G S+S+ER+R
Sbjct: 205 QEAVLLETQERQMKSQLLYEAVEALEARHKEIFVARSLSAVPRTLKELGEKFSISQERVR 264
Query: 356 QIRGIALTKLQQ 367
QI A+ K+ +
Sbjct: 265 QIHARAMKKVTE 276
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 173 (66.0 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
Identities = 36/120 (30%), Positives = 61/120 (50%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
++ + R+I +Y L +S+A ++ G + DLIQE +GL++ A +F+P+RG + STY
Sbjct: 37 RDEAALHRLITAYMRLAISMAAKFKRYGAPMNDLIQEAGLGLMKAADKFDPDRGVRFSTY 96
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
WWIK +I + +R GS + + V +R R TD + +H
Sbjct: 97 AVWWIKASIQDYVMRNWSMVRT-GSTSSQKSLFFNMRRVQARLEREAATDGLALDRHQLH 155
Score = 68 (29.0 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
L+ERE I+R D P + + +G L LS+ER+RQ+ A K++++
Sbjct: 231 LNERERFIVRERKLRD--EPRTLESLGDELGLSKERVRQLEAAAFAKMRKS 279
>UNIPROTKB|P50511 [details] [associations]
symbol:rpoH "RNA polymerase sigma-32 factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 EMBL:U44432 PIR:D82357 RefSeq:NP_229808.1
ProteinModelPortal:P50511 DNASU:2614865 GeneID:2614865
KEGG:vch:VC0150 PATRIC:20079338 OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 167 (63.8 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++ + +I S+ VV +A GY G GL + DL+QEG+IGL++ KRFNPE G +L ++
Sbjct: 48 DAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVH 107
Query: 201 WIKQAIIRAIANKSRTIRLPGSMA 224
WIK I + R +++ + A
Sbjct: 108 WIKAEIHEYVLRNWRIVKIATTKA 131
Score = 70 (29.7 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+L ER I+R + LD + +++ + +S ERIRQ+ A+ KL++
Sbjct: 232 SLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
>TIGR_CMR|VC_0150 [details] [associations]
symbol:VC_0150 "RNA polymerase sigma-32 factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03089 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 EMBL:U44432
PIR:D82357 RefSeq:NP_229808.1 ProteinModelPortal:P50511
DNASU:2614865 GeneID:2614865 KEGG:vch:VC0150 PATRIC:20079338
OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 167 (63.8 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++ + +I S+ VV +A GY G GL + DL+QEG+IGL++ KRFNPE G +L ++
Sbjct: 48 DAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFNPEMGVRLVSFAVH 107
Query: 201 WIKQAIIRAIANKSRTIRLPGSMA 224
WIK I + R +++ + A
Sbjct: 108 WIKAEIHEYVLRNWRIVKIATTKA 131
Score = 70 (29.7 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+L ER I+R + LD + +++ + +S ERIRQ+ A+ KL++
Sbjct: 232 SLDERSQHIVRARW-LDDDNKTTLQDLAEMYGVSAERIRQLEKNAMRKLKE 281
>TIGR_CMR|CPS_0161 [details] [associations]
symbol:CPS_0161 "RNA polymerase sigma-32 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_266929.1 ProteinModelPortal:Q48AI4
STRING:Q48AI4 DNASU:3520829 GeneID:3520829 KEGG:cps:CPS_0161
PATRIC:21463737 OMA:EIAYAER BioCyc:CPSY167879:GI48-264-MONOMER
Uniprot:Q48AI4
Length = 285
Score = 195 (73.7 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 60/243 (24%), Positives = 108/243 (44%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++ + +I S+ V+ +A GY G GL DL+QEG++GL++ KRFNPE G +L ++
Sbjct: 47 QAAQELIMSHLRFVIHVAKGYSGYGLPHADLVQEGNVGLMKAVKRFNPEVGVRLVSFAVH 106
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTD--SEIAEMLNIHV 258
WIK I + R +++ + A N +RL T+ + +AE L +
Sbjct: 107 WIKAEIHEFVLKNWRIVKVATTKAQRKLFFNLRKN--KKRLGWFSTEEVNTVAENLGVTT 164
Query: 259 STV-RLAIERTRHPISLDGAVTDRGCMTMQDIIPGP--DETMPERMVXXXX------XXX 309
V + + H + + + D + P + + V
Sbjct: 165 KDVMEMESRMSSHDQAFELSKDDDDNLGSSSFSPAQYLQDKQSDLAVEVENDNWDNHANK 224
Query: 310 XXXXXXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369
TL ER DI++ + + +T + +E+ +S ER+RQ+ AL+KL+ T
Sbjct: 225 RLSTALVTLDERSQDIIKTRWLTEDKTTL--QELANKYQISAERVRQLEKNALSKLKNTM 282
Query: 370 ILN 372
+ +
Sbjct: 283 VFD 285
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 166 (63.5 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 35/102 (34%), Positives = 58/102 (56%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
+ E +Y L K + ++ +++I S+ VV +A GY G GL DLIQEG+IGL++
Sbjct: 33 DAETEYELAKRLQETGDLQAAKQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKA 92
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMA 224
KRF+P+ G +L ++ WIK I + R +++ + A
Sbjct: 93 VKRFDPDVGVRLVSFAVHWIKAEIHEYVLKNWRIVKVATTKA 134
Score = 69 (29.3 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
TL ER ILR + D +T + +E+ +S ERIRQ+ A+ KL+
Sbjct: 233 TLDERSQHILRARWLDDDKTTL--QELAETYQVSAERIRQLEKNAMNKLK 280
>UNIPROTKB|Q9KQD4 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 178 (67.7 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 67/231 (29%), Positives = 111/231 (48%)
Query: 142 SQERIIRSYRSLVVSIATGYQGK---GLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
SQ+ + Y LV IA G+ + ++DLIQ G +GLL K ++ +G TY
Sbjct: 15 SQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYA 74
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
I+ A++ I R +P S+ +I++A VL L R PTD+E+A+ LN+ +
Sbjct: 75 GIRIRGAMLDDIR---RGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSL 131
Query: 259 S---TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXX 315
+V + I +R D V+D ++ G D + P V
Sbjct: 132 EQYHSVLMDINCSRIVGIEDLGVSDDAISPFEE---GEDNS-PFHGVAEESFRKALVESI 187
Query: 316 XTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
+L EREA +L L++ D + ++ KEIG +L +S R+ QI ++ +L+
Sbjct: 188 KSLPEREALVLSLYY--DEE--LNLKEIGEVLGVSESRVSQILSQSMQRLR 234
>TIGR_CMR|VC_2066 [details] [associations]
symbol:VC_2066 "RNA polymerase sigma factor for flagellar
operon FliA" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:D82123
RefSeq:NP_231698.1 ProteinModelPortal:Q9KQD4 DNASU:2613446
GeneID:2613446 KEGG:vch:VC2066 PATRIC:20083166 OMA:DSFWGYG
Uniprot:Q9KQD4
Length = 244
Score = 178 (67.7 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 67/231 (29%), Positives = 111/231 (48%)
Query: 142 SQERIIRSYRSLVVSIATGYQGK---GLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
SQ+ + Y LV IA G+ + ++DLIQ G +GLL K ++ +G TY
Sbjct: 15 SQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYA 74
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
I+ A++ I R +P S+ +I++A VL L R PTD+E+A+ LN+ +
Sbjct: 75 GIRIRGAMLDDIR---RGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSL 131
Query: 259 S---TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXX 315
+V + I +R D V+D ++ G D + P V
Sbjct: 132 EQYHSVLMDINCSRIVGIEDLGVSDDAISPFEE---GEDNS-PFHGVAEESFRKALVESI 187
Query: 316 XTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
+L EREA +L L++ D + ++ KEIG +L +S R+ QI ++ +L+
Sbjct: 188 KSLPEREALVLSLYY--DEE--LNLKEIGEVLGVSESRVSQILSQSMQRLR 234
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 156 (60.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 33/84 (39%), Positives = 49/84 (58%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+ + +I S+ VV IA Y G GL DLIQEG+IGL++ +RFNPE G +L ++
Sbjct: 48 EAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVH 107
Query: 201 WIKQAIIRAIANKSRTIRLPGSMA 224
WIK I + R +++ + A
Sbjct: 108 WIKAEIHEYVLRNWRIVKVATTKA 131
Score = 68 (29.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
L ER DI+R + LD + +E+ +S ER+RQ+ A+ KL+
Sbjct: 232 LDERSQDIIRARW-LDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLR 279
>TIGR_CMR|CBU_1909 [details] [associations]
symbol:CBU_1909 "RNA polymerase sigma-32 factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 GenomeReviews:AE016828_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392
HSSP:Q9EZJ8 EMBL:AF120928 ProteinModelPortal:Q9LAQ0 PRIDE:Q9LAQ0
PATRIC:17932555 BioCyc:CBUR227377:GJ7S-1884-MONOMER Uniprot:Q9LAQ0
Length = 288
Score = 184 (69.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 70/257 (27%), Positives = 120/257 (46%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
+ E +++L + E+ +++ S+ VV IA GY G GLS DLIQEG+IGL++
Sbjct: 32 SAEEEHDLANKFRQSNDLEAARKLVLSHLRFVVRIARGYSGYGLSQADLIQEGNIGLMKA 91
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
KRF+P+ G +L ++ WI+ I I R +++ + A K+ N + R
Sbjct: 92 VKRFDPQVGVRLVSFAVHWIRAEIHEFILKNWRIVKIATTKAQR--KLF-FNLRKHAKKR 148
Query: 243 RMPTDSE---IAEMLNIHVSTVRLAIERTR-HPISLDGA--VTDRGCMT-------MQDI 289
+D E +AE LN+ VR ER + + DGA +D G + ++D
Sbjct: 149 GWFSDHEAFALAEELNVSTKDVRQMEERLNSYDEAFDGADEESDSGTPSWGAPAHYLEDK 208
Query: 290 IPGPDETMPERMVXXXXXXXXXXXXXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSL 349
P + ER ++ +R DIL + + ++ + E+ ++
Sbjct: 209 RYNPALQL-ERSNWADDQEHRLHNAMQSMDDRSRDILYQRWLSEKKSTLH--ELAAQYAV 265
Query: 350 SRERIRQIRGIALTKLQ 366
S ERIRQ+ A+ K++
Sbjct: 266 SAERIRQLEKNAMQKIR 282
>TIGR_CMR|CHY_2055 [details] [associations]
symbol:CHY_2055 "RNA polymerase sigma-G factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014212 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 RefSeq:YP_360874.1
ProteinModelPortal:Q3AAG0 STRING:Q3AAG0 GeneID:3726360
KEGG:chy:CHY_2055 PATRIC:21277191 OMA:QISDERN ProtClustDB:PRK08215
BioCyc:CHYD246194:GJCN-2054-MONOMER TIGRFAMs:TIGR02850
Uniprot:Q3AAG0
Length = 257
Score = 179 (68.1 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 62/230 (26%), Positives = 108/230 (46%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++++I LV+SI + +G + DL Q G IGL++ F+ E+ K STY
Sbjct: 35 DMEARQKLISGNLRLVLSIIQRFTNRGEYVDDLFQVGCIGLIKAIDNFDLEQNVKFSTYA 94
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
I I R + + + IR+ S+ + K + + L R R PT SEIA+ L +
Sbjct: 95 VPMIIGEIRRYLRDNN-PIRVSRSLRDVAYKALQVRDNLVGRFSREPTVSEIAQELKVPQ 153
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXX-XXXXXXXXXXXT 317
V A++ + P+SL + G D I D+ E+
Sbjct: 154 EEVVFALDAIQDPVSLFEPIYQDG----GDPIFVMDQIKDEKNTDHNWLQGIALKEALER 209
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
L+ERE IL+L F +G+T + E+ + +S+ ++ ++ AL L++
Sbjct: 210 LNERERLILKLRF-YEGKTQM---EVAEEIGISQAQVSRLEKAALNHLRK 255
>UNIPROTKB|O32728 [details] [associations]
symbol:O32728 "RNA polymerase sigma factor" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
TIGRFAMs:TIGR02980 EMBL:L47360 PDB:1L0O PDBsum:1L0O
ProteinModelPortal:O32728 SMR:O32728 IntAct:O32728
EvolutionaryTrace:O32728 TIGRFAMs:TIGR02885 Uniprot:O32728
Length = 250
Score = 172 (65.6 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 53/159 (33%), Positives = 78/159 (49%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++E+++ II LV S+ + +G DL Q G IGLL+ +F+ K STY
Sbjct: 28 DQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYA 87
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
I I R + + T+++ S+ M KI +A + LS+ R PT +EIA+ L I
Sbjct: 88 VPMIIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRSPTITEIADHLGISP 146
Query: 259 STVRLAIERTRHPISLDGAV--TDRGCMTMQDIIPGPDE 295
V LA E R P S+ V D +T+ D I DE
Sbjct: 147 EDVVLAQEAVRLPTSIHETVYENDGDPITLLDQIADADE 185
>UNIPROTKB|O83707 [details] [associations]
symbol:TP_0709 "RNA polymerase sigma factor" species:243276
"Treponema pallidum subsp. pallidum str. Nichols" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
GO:GO:0003899 EMBL:AE000520 GenomeReviews:AE000520_GR
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 KO:K02405
OMA:TYAITRI TIGRFAMs:TIGR02479 HSSP:Q9EZJ8 PIR:A71290
RefSeq:NP_219146.1 ProteinModelPortal:O83707 IntAct:O83707
MINT:MINT-6480056 GeneID:2610969 KEGG:tpa:TP0709 PATRIC:20531509
ProtClustDB:PRK06288 Uniprot:O83707
Length = 262
Score = 173 (66.0 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 68/228 (29%), Positives = 105/228 (46%)
Query: 157 IATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRT 216
IA G G + DL+ G GL +++PE+ + +TY I+ AI ++ R+
Sbjct: 45 IAVGKPGN-VEFDDLVSYGIFGLFDAIDKYDPEKNIRFNTYAVTRIRGAIF----DELRS 99
Query: 217 IR-LPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVR---LAIERTRHPI 272
I +P S+ +I EA L RL R TD+EIA LNI + L + T I
Sbjct: 100 IDWVPRSVRQQTRQIEEAIADLEARLGRXATDTEIACALNIELEEYHQLLLKVSGTS-VI 158
Query: 273 SL-DGAV--TDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLSEREADILRLH 329
SL D +R +++ D I P P+ +V LS+RE +L L+
Sbjct: 159 SLADSKFGGDERDHVSVGDSIEAPASLNPDVIVEREEIKRIIAEAIRELSQREQQVLILY 218
Query: 330 FGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ--TNILNNLK 375
+ ++ KEIG++L ++ RI QI A KL+ TNI ++
Sbjct: 219 Y----YEEMTLKEIGKVLKVTESRISQIHTSANLKLKAKLTNIKKGIR 262
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 175 (66.7 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 65/239 (27%), Positives = 117/239 (48%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
R++ S+ LVV +A ++ L L +LI EG+IGL++ K+FNP G++LSTY WWIK
Sbjct: 50 RLVTSHLRLVVKVALSFKNYELPLIELIMEGNIGLMQAVKKFNPTLGFRLSTYAIWWIKA 109
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMP---TDSEIAEMLNIHVSTV 261
I I I++ + A K+ + + ++L + T +I + N ST
Sbjct: 110 FIKDYILKSWSCIKIGTTQAQR--KLFFSLRKIKKKLFKYNHNITKEDIKLIAN-KCSTS 166
Query: 262 RLAIER-TRHPISLDGAVTD-------RGCMTMQDII----PGPDET--MPERMVXXXXX 307
+E+ R+ + D ++ + + + +Q+II P ++T + E +
Sbjct: 167 EQEVEQMNRYFLYRDRSLNELVFSNDNQNGVELQEIIKCDTPNQEDTYLLNEEL---NIK 223
Query: 308 XXXXXXXXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
TL+ER DI + L + P + ++ + ++S+ER+RQI A TK++
Sbjct: 224 KALISQALSTLNERYRDIF-IRRRLI-EEPDTLDKLSQEYNISKERVRQIEMHAFTKVK 280
>UNIPROTKB|P0AEM6 [details] [associations]
symbol:fliA "RNA polymerase, sigma 28 (sigma F) factor"
species:83333 "Escherichia coli K-12" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016987
"sigma factor activity" evidence=IEA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 EMBL:L36677 EMBL:U18539
PIR:JC4346 RefSeq:NP_416432.3 RefSeq:YP_490179.1
ProteinModelPortal:P0AEM6 SMR:P0AEM6 DIP:DIP-47959N IntAct:P0AEM6
MINT:MINT-1250982 PRIDE:P0AEM6 EnsemblBacteria:EBESCT00000000857
EnsemblBacteria:EBESCT00000000858 EnsemblBacteria:EBESCT00000015311
GeneID:12930662 GeneID:948824 KEGG:ecj:Y75_p1893 KEGG:eco:b1922
PATRIC:32119179 EchoBASE:EB1330 EcoGene:EG11355 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI ProtClustDB:PRK06986
BioCyc:EcoCyc:EG11355-MONOMER BioCyc:ECOL316407:JW1907-MONOMER
BioCyc:MetaCyc:EG11355-MONOMER Genevestigator:P0AEM6
TIGRFAMs:TIGR02479 Uniprot:P0AEM6
Length = 239
Score = 162 (62.1 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 53/203 (26%), Positives = 97/203 (47%)
Query: 166 LSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAG 225
+ L DL+Q G IGLL +R++ +G +TY I+ A++ + +SR +P S+
Sbjct: 39 VELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDEL--RSRDW-VPRSVRR 95
Query: 226 MVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHP--ISLDGAVTDRGC 283
++A+A L + L R T++E+AE L I ++ R + T + S D + G
Sbjct: 96 NAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGD 155
Query: 284 MTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLSEREADILRLHFGLDGQTPVSCKEI 343
+++ + P + + TL ERE +L L++ Q ++ KEI
Sbjct: 156 -SIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYY----QEELNLKEI 210
Query: 344 GRLLSLSRERIRQIRGIALTKLQ 366
G +L + R+ Q+ A+ +L+
Sbjct: 211 GAVLEVGESRVSQLHSQAIKRLR 233
>TIGR_CMR|CHY_1013 [details] [associations]
symbol:CHY_1013 "RNA polymerase sigma factor for flagellar
operon" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0030092
"regulation of flagellum assembly" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG1191 HOGENOM:HOG000270271 KO:K02405 TIGRFAMs:TIGR02479
RefSeq:YP_359860.1 ProteinModelPortal:Q3ADC4 STRING:Q3ADC4
GeneID:3727796 KEGG:chy:CHY_1013 PATRIC:21275159 OMA:RTEDELW
BioCyc:CHYD246194:GJCN-1012-MONOMER Uniprot:Q3ADC4
Length = 254
Score = 157 (60.3 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 63/242 (26%), Positives = 108/242 (44%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGK---GLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
K + + ++ Y LV ++ K LS +D+ G IGL+ + ++ RG K
Sbjct: 19 KSLQLRNELLEYYLPLVRKVSAAMSLKLPTHLSREDIEGYGIIGLIEAVETYDQNRGVKF 78
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRL-RRMPTDSEIAEM 253
+Y I+ AII + ++ LP S+ + K+ + +L L +P + ++AE
Sbjct: 79 ESYASLKIRAAIIDELRKQNF---LPRSVWDKIKKVTTSEEMLLNALGEEVPVE-KVAEQ 134
Query: 254 LNIHVSTV---RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXX 310
L + VS V + I H +SLD + G + + ++ PE
Sbjct: 135 LGVSVSDVLKIKTLIALKNH-LSLDEIIDPEGSVDRFAGLADDEKYSPENKFLKRVEIEE 193
Query: 311 XXXXXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
LS+RE IL+L + + +S KEI +L +S R+ QI AL KL++ +
Sbjct: 194 LREALKRLSDRERLILQLFYVEE----LSLKEIAAVLDISTSRVSQIASKALGKLRK--L 247
Query: 371 LN 372
LN
Sbjct: 248 LN 249
>TIGR_CMR|BA_4294 [details] [associations]
symbol:BA_4294 "RNA polymerase sigma-F factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
TIGRFAMs:TIGR02885 RefSeq:NP_846527.1 RefSeq:YP_020937.1
RefSeq:YP_030233.1 HSSP:O32728 ProteinModelPortal:Q81MF5 SMR:Q81MF5
DNASU:1088482 EnsemblBacteria:EBBACT00000012570
EnsemblBacteria:EBBACT00000017412 EnsemblBacteria:EBBACT00000022371
GeneID:1088482 GeneID:2818699 GeneID:2850307 KEGG:ban:BA_4294
KEGG:bar:GBAA_4294 KEGG:bat:BAS3983 OMA:IRRSQEG
ProtClustDB:PRK05572 BioCyc:BANT260799:GJAJ-4040-MONOMER
BioCyc:BANT261594:GJ7F-4178-MONOMER Uniprot:Q81MF5
Length = 252
Score = 156 (60.0 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 48/160 (30%), Positives = 79/160 (49%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++++++ I++S LV S+ + +G DL Q G IGLL+ +F+ K STY
Sbjct: 30 DQQARDTIVQSNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKSVDKFDLSFDVKFSTYA 89
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
I I R + + ++++ S+ KI + + LS+ R PT +E+AE L +
Sbjct: 90 VPMIIGEIQRFLRDDG-SVKVSRSLKETGNKIRKMRDELSKEFGRAPTINEVAEALELTP 148
Query: 259 STVRLAIERTRHPISLDGAV--TDRGCMTMQDIIPGPDET 296
V LA E +R P S+ V D +T+ D I ET
Sbjct: 149 EEVVLAQEASRAPSSIHETVYENDGDPITILDQIADQSET 188
>TIGR_CMR|BA_4043 [details] [associations]
symbol:BA_4043 "RNA polymerase sigma-29 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 RefSeq:NP_846283.1
RefSeq:YP_020685.1 RefSeq:YP_030006.1 ProteinModelPortal:P62177
DNASU:1086623 EnsemblBacteria:EBBACT00000012093
EnsemblBacteria:EBBACT00000017203 EnsemblBacteria:EBBACT00000022798
GeneID:1086623 GeneID:2816772 GeneID:2850034 KEGG:ban:BA_4043
KEGG:bar:GBAA_4043 KEGG:bat:BAS3755 OMA:LIMELRF
ProtClustDB:PRK08301 BioCyc:BANT260799:GJAJ-3813-MONOMER
BioCyc:BANT261594:GJ7F-3931-MONOMER TIGRFAMs:TIGR02835
Uniprot:P62177
Length = 239
Score = 123 (48.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 33/100 (33%), Positives = 56/100 (56%)
Query: 119 LDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIG 178
L KE E+ N K+ ++ ++ +I LVV IA ++ G++++DLI G+IG
Sbjct: 39 LTKEEEEVLLN----KLPKGDQAARSLLIERNLRLVVYIARKFENTGINIEDLISIGTIG 94
Query: 179 LLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIA--NKSRT 216
L++ FNPE+ KL+TY I+ I+ + NK+R+
Sbjct: 95 LIKAVNTFNPEKKIKLATYASRCIENEILMHLRRNNKNRS 134
Score = 71 (30.1 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 20/97 (20%), Positives = 46/97 (47%)
Query: 271 PISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLSEREADILRLHF 330
P+++D D + + D++ G D+ + + + L++RE I+ L F
Sbjct: 141 PLNIDW---DGNELLLSDVL-GTDDDIITKDLEATVDRHLLMKALHQLNDREKQIMELRF 196
Query: 331 GLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
GL G + K++ +L +S+ I ++ + +L++
Sbjct: 197 GLAGGEEKTQKDVADMLGISQSYISRLEKRIIKRLRK 233
>UNIPROTKB|Q9K5J6 [details] [associations]
symbol:sigB "RNA polymerase sigma-B factor" species:1392
"Bacillus anthracis" [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IMP] [GO:0016987 "sigma factor activity"
evidence=IMP] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 EMBL:AJ272497
RefSeq:NP_843493.1 RefSeq:YP_017620.1 RefSeq:YP_027202.1
ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 154 (59.3 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 59/234 (25%), Positives = 106/234 (45%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+QER++ Y++LV SIA Y G +D+IQ G +GLL +R++ G +
Sbjct: 29 EAQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLGLLGAIRRYDYSIGNAFEPFAIP 88
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
I I + + +K+ I +P + + KI A L+ L+R P EIA+ L +
Sbjct: 89 TIVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELTDHLQRSPKIIEIADHLGLSEEE 148
Query: 261 VRLAIE-RTRHPIS-LDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTL 318
V ++ + + +S LD V + + I E E+ L
Sbjct: 149 VLEIMDAKNNYRVSSLDDVVENASDGSSVARIESVGEV--EQGYEQTERRLVLKDIFNVL 206
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+E E ++ F + ++ K+ G L +S+ + +I+ A++KL+Q L+
Sbjct: 207 NETEKSVIHYIF----EENLNQKDTGERLGISQMHVSRIKRQAISKLKQAAFLD 256
>TIGR_CMR|BA_0992 [details] [associations]
symbol:BA_0992 "RNA polymerase sigma-B factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=IMP] [GO:0016987
"sigma factor activity" evidence=IMP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG1191 EMBL:AJ272497 RefSeq:NP_843493.1 RefSeq:YP_017620.1
RefSeq:YP_027202.1 ProteinModelPortal:Q9K5J6 DNASU:1088960
EnsemblBacteria:EBBACT00000009251 EnsemblBacteria:EBBACT00000017740
EnsemblBacteria:EBBACT00000023287 GeneID:1088960 GeneID:2814654
GeneID:2850205 KEGG:ban:BA_0992 KEGG:bar:GBAA_0992 KEGG:bat:BAS0928
HOGENOM:HOG000270270 KO:K03090 OMA:VEQGYEE ProtClustDB:PRK08583
BioCyc:BANT260799:GJAJ-1006-MONOMER
BioCyc:BANT261594:GJ7F-1051-MONOMER InterPro:IPR014288
TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02941 Uniprot:Q9K5J6
Length = 257
Score = 154 (59.3 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 59/234 (25%), Positives = 106/234 (45%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+QER++ Y++LV SIA Y G +D+IQ G +GLL +R++ G +
Sbjct: 29 EAQERLVDHYKNLVYSIAYRYSKGGPMHEDIIQVGMLGLLGAIRRYDYSIGNAFEPFAIP 88
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
I I + + +K+ I +P + + KI A L+ L+R P EIA+ L +
Sbjct: 89 TIVGEIKKYLRDKTWGIHVPRRIKDLGGKIKLAIEELTDHLQRSPKIIEIADHLGLSEEE 148
Query: 261 VRLAIE-RTRHPIS-LDGAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTL 318
V ++ + + +S LD V + + I E E+ L
Sbjct: 149 VLEIMDAKNNYRVSSLDDVVENASDGSSVARIESVGEV--EQGYEQTERRLVLKDIFNVL 206
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+E E ++ F + ++ K+ G L +S+ + +I+ A++KL+Q L+
Sbjct: 207 NETEKSVIHYIF----EENLNQKDTGERLGISQMHVSRIKRQAISKLKQAAFLD 256
>TIGR_CMR|GSU_3053 [details] [associations]
symbol:GSU_3053 "RNA polymerase sigma factor for flagellar
operon" species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012845 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI
TIGRFAMs:TIGR02479 RefSeq:NP_954095.1 ProteinModelPortal:Q748E9
GeneID:2686906 KEGG:gsu:GSU3053 PATRIC:22028957
ProtClustDB:CLSK829077 BioCyc:GSUL243231:GH27-2993-MONOMER
Uniprot:Q748E9
Length = 250
Score = 153 (58.9 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 53/205 (25%), Positives = 91/205 (44%)
Query: 166 LSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAG 225
L +DL+ IGL+ A+RF+P RG + T+ I+ II + ++ R S+
Sbjct: 46 LDQEDLMSAAIIGLITAAERFDPTRGVQFKTFAEQRIRGTIIDELRSQDWLTR---SLRD 102
Query: 226 MVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTR--HPISLDGA-VTDRG 282
K+ + +L +L R PT E+A L + V +E +SLD + D G
Sbjct: 103 KFKKLEKEFVLLEHQLGRNPTSEEVATALKMSVDEYYQMLEEIHLLSFVSLDESWEDDDG 162
Query: 283 C-MTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLSEREADILRLHFGLDGQTPVSCK 341
+ DI+ P+ + +L E+E ++ L++ ++ K
Sbjct: 163 SPFGLLDILADTSIENPQSQLMARQMLDSLTESIESLPEKERLVITLYY----YEELNLK 218
Query: 342 EIGRLLSLSRERIRQIRGIALTKLQ 366
EIG +L LS RI Q+ A+ +L+
Sbjct: 219 EIGAVLELSESRISQLHSQAIVRLR 243
>TIGR_CMR|CHY_2056 [details] [associations]
symbol:CHY_2056 "RNA polymerase sigma-E factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK08301
TIGRFAMs:TIGR02835 RefSeq:YP_360875.1 ProteinModelPortal:Q3AAF9
STRING:Q3AAF9 GeneID:3727807 KEGG:chy:CHY_2056 PATRIC:21277193
OMA:ERQETTI BioCyc:CHYD246194:GJCN-2055-MONOMER Uniprot:Q3AAF9
Length = 237
Score = 122 (48.0 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 146 IIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQA 205
I R+ R LVV IA ++ G++++DL+ G+IGL++ FNPE+ KL+TY I+
Sbjct: 61 IERNLR-LVVYIARKFENTGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLATYASRCIENE 119
Query: 206 IIRAIANKSRTIRL 219
I+ + S+ IRL
Sbjct: 120 ILMYLRRNSK-IRL 132
Score = 69 (29.3 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 247 DSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXXX 306
++EI L + S +RL + P+++D D + + D++ G + + +++
Sbjct: 117 ENEILMYLRRN-SKIRLEVSFDE-PLNVDW---DGNELLLSDVL-GTEGDIIYKVMEDEV 170
Query: 307 XXXXXXXXXXTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
L++RE I+ L FGL DG KE+ LL +S+ I ++ L +L
Sbjct: 171 EKKLLKVALSKLNQRERKIMELRFGLTDGYERTQ-KEVADLLGISQSYISRLEKKILKRL 229
Query: 366 QQ 367
++
Sbjct: 230 KK 231
>TIGR_CMR|CPS_1519 [details] [associations]
symbol:CPS_1519 "motility sigma factor FliA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 RefSeq:YP_268261.1 ProteinModelPortal:Q485K4
STRING:Q485K4 GeneID:3522182 KEGG:cps:CPS_1519 PATRIC:21466245
OMA:YDEWRED BioCyc:CPSY167879:GI48-1600-MONOMER Uniprot:Q485K4
Length = 239
Score = 146 (56.5 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 54/203 (26%), Positives = 91/203 (44%)
Query: 166 LSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAG 225
+ + DLIQ G IGL A F+ +G T+ I+ A++ I T P S+
Sbjct: 39 VQVDDLIQSGMIGLFEAANNFDNTKGASFETFAGIRIRGAMLDEIRRGDWT---PRSVHK 95
Query: 226 MVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIER--TRHPISLDGAVTDRGC 283
I+EA L +L R +D E+AE L+I + + T + +D +
Sbjct: 96 NSRMISEAIKQLEAQLGRDVSDVEVAEKLDISLKDYHQILSEVSTGKILGIDDLGVNEDA 155
Query: 284 MTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLSEREADILRLHFGLDGQTPVSCKEI 343
+ D G D P + + +L EREA +L L++ D + ++ +EI
Sbjct: 156 IKPSDDYIGDD---PYQSIERIAFKKGLTQCIKSLPEREALVLSLYY--DEE--LNLREI 208
Query: 344 GRLLSLSRERIRQIRGIALTKLQ 366
G++L +S R+ QI A+ +L+
Sbjct: 209 GQVLDVSESRVSQIHSQAMHRLK 231
>TIGR_CMR|BA_4042 [details] [associations]
symbol:BA_4042 "RNA polymerase sigma-G factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014212 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HSSP:P00579 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
OMA:QISDERN ProtClustDB:PRK08215 TIGRFAMs:TIGR02850
RefSeq:NP_846282.1 RefSeq:YP_020684.2 ProteinModelPortal:Q81WD6
DNASU:1086511 EnsemblBacteria:EBBACT00000008607
EnsemblBacteria:EBBACT00000015378 GeneID:1086511 GeneID:2816830
KEGG:ban:BA_4042 KEGG:bar:GBAA_4042 PATRIC:18785676
BioCyc:BANT261594:GJ7F-3930-MONOMER Uniprot:Q81WD6
Length = 259
Score = 146 (56.5 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 52/231 (22%), Positives = 104/231 (45%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
E ++E+++ LV+S+ + +G + DL Q G IGL++ F+ + K STY
Sbjct: 35 EISAREKLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLMKSIDNFDLGQNVKFSTYA 94
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
I I R + + + IR+ S+ + K + L + PT +IA++L +
Sbjct: 95 VPMIIGEIRRYLRDNN-PIRVSRSLRDIAYKALQVREKLIAENSKEPTAMDIAKVLEVTH 153
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVXXX-XXXXXXXXXXXT 317
+ A++ + P+SL + + G D I D+ E+
Sbjct: 154 EEIVFALDAIQDPVSLFEPIYNDG----GDPIFVMDQLSDEKQKDEQWVEELALKEGMKR 209
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
L++RE I+R F G+T + E+ + +S+ ++ ++ A+ ++ +T
Sbjct: 210 LNDREKMIIRKRF-FQGKTQM---EVAEEIGISQAQVSRLEKSAIKQMNKT 256
>TIGR_CMR|SO_3210 [details] [associations]
symbol:SO_3210 "RNA polymerase sigma-27 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009296
"flagellum assembly" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HOGENOM:HOG000270271 KO:K02405
ProtClustDB:PRK06986 TIGRFAMs:TIGR02479 HSSP:P00579
RefSeq:NP_718765.1 ProteinModelPortal:Q8ECD3 GeneID:1170903
KEGG:son:SO_3210 PATRIC:23526104 OMA:PHESEIA Uniprot:Q8ECD3
Length = 237
Score = 143 (55.4 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 57/231 (24%), Positives = 104/231 (45%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGK---GLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
+++ I+ Y LV IA + + L DL+Q G +GLL + +F+ +G K T+
Sbjct: 11 DNKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFDGGKGAKFETF 70
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
I+ A++ I R +P S+ +IA+A + L + L R D+EIAE L++
Sbjct: 71 AGIRIRGAMLDEIR---RGDWVPRSVHRNNRRIAQAIDELEQVLGRDARDTEIAEKLDMT 127
Query: 258 VSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPE--RMVXXXXXXXXXXXXX 315
+ + + +S+ + +DI+ D ++
Sbjct: 128 LDEYHHIL----NDVSVGKIIGIEDLGVSEDILTTSDNVSDGTFEVLAETQFHSALVEAI 183
Query: 316 XTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
L ER+A +L L++ ++ KEIG +L +S R+ QI A+ +L+
Sbjct: 184 KILPERDALVLSLYY----DEALNLKEIGAILEVSESRVSQILSQAMLRLK 230
>UNIPROTKB|Q7D5S2 [details] [associations]
symbol:sigF "Alternative RNA polymerase sigma factor SigF"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0006629 "lipid metabolic process"
evidence=IMP] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0006995 "cellular response to nitrogen
starvation" evidence=IEP] [GO:0009409 "response to cold"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0034059 "response to anoxia" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0046677 "response to antibiotic" evidence=IMP] [GO:0052572
"response to host immune response" evidence=IEP] [GO:0070417
"cellular response to cold" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0045893 GO:GO:0006979 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006629 GO:GO:0046677 GO:GO:0052572 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0070417
GO:GO:0006995 GO:GO:0034059 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0043175
HOGENOM:HOG000270270 KO:K03090 TIGRFAMs:TIGR02980 EMBL:AL123456
RefSeq:NP_217803.1 RefSeq:NP_337914.1 RefSeq:YP_006516763.1
SMR:Q7D5S2 IntAct:Q7D5S2 EnsemblBacteria:EBMYCT00000001724
EnsemblBacteria:EBMYCT00000068996 GeneID:13318109 GeneID:888727
GeneID:922492 KEGG:mtc:MT3385 KEGG:mtu:Rv3286c KEGG:mtv:RVBD_3286c
PATRIC:18129196 TubercuList:Rv3286c OMA:EMDRDEV
ProtClustDB:PRK07122 Uniprot:Q7D5S2
Length = 261
Score = 142 (55.0 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 53/227 (23%), Positives = 101/227 (44%)
Query: 143 QERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWI 202
+++I++ L IA ++G+G DLIQ +GL+ A RF+ + G ++ I
Sbjct: 40 RDKIVQRCLPLADHIARRFEGRGEPRDDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTI 99
Query: 203 KQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV- 261
+ R + S ++++P + + ++ A LS+RL R P+ SE+A L + + V
Sbjct: 100 MGEVRRHFRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVI 159
Query: 262 -RLAIERTRHPISLD-GAVTDRGCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLS 319
L + H +S+D G +D + D + D + + L
Sbjct: 160 EGLLAGSSYHTLSIDSGGGSDDDARAITDTLGDVDAGLDQ-----IENREVLRPLLEALP 214
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
ERE +L L F D T +I + +S+ + ++ +L +L+
Sbjct: 215 ERERTVLVLRF-FDSMTQT---QIAERVGISQMHVSRLLAKSLARLR 257
>TIGR_CMR|CHY_0617 [details] [associations]
symbol:CHY_0617 "RNA polymerase sigma-K factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK05803
TIGRFAMs:TIGR02846 RefSeq:YP_359473.1 ProteinModelPortal:Q3AEG1
STRING:Q3AEG1 GeneID:3728237 KEGG:chy:CHY_0617 PATRIC:21274371
OMA:LERETEC BioCyc:CHYD246194:GJCN-617-MONOMER Uniprot:Q3AEG1
Length = 234
Score = 111 (44.1 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
++L +RE+++ + LV I ++G G + +DLI G+IGL++ F P++G K
Sbjct: 42 RLLQGDREARDVLAERNLRLVAHIVKKFEGTGEATEDLISIGTIGLIKAIDTFRPDKGTK 101
Query: 194 LSTYVYWWIKQAII 207
L+TY ++ I+
Sbjct: 102 LATYAAKCVENEIL 115
Score = 64 (27.6 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 28/106 (26%), Positives = 49/106 (46%)
Query: 264 AIERTRHPISL-DGAVTDR--GCMTMQDIIPGPDETMPERMVXXXXXXXXXXXXXXTLSE 320
A ++ R +SL D D+ +T+ DI+ + + E++V L+
Sbjct: 120 ATKKNRGEVSLYDPIGFDKEGNEITLLDILGTRGDIVLEQVVRMLDAETIEKNLKK-LTP 178
Query: 321 READILRLHFGLDGQTPVSC-KEIGRLLSLSRERIRQIRGIALTKL 365
RE ++ FGL QTP +EI + + +SR + +I A+ KL
Sbjct: 179 RERKVIEERFGLS-QTPRKTQREIAKKMGISRSYVSRIEKRAILKL 223
>TIGR_CMR|CHY_1959 [details] [associations]
symbol:CHY_1959 "RNA polymerase sigma-F factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02885
RefSeq:YP_360778.1 ProteinModelPortal:Q3AAQ6 STRING:Q3AAQ6
GeneID:3726621 KEGG:chy:CHY_1959 PATRIC:21277005 OMA:PRERYIL
ProtClustDB:CLSK941224 BioCyc:CHYD246194:GJCN-1958-MONOMER
Uniprot:Q3AAQ6
Length = 257
Score = 133 (51.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 61/231 (26%), Positives = 106/231 (45%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++I LV + + +G ++DL Q G+IGL++ +F+ ++ K STY
Sbjct: 35 AREKLINCNLKLVFKVVERFLHRGYEVEDLFQIGTIGLIKAIDKFDLKQQVKFSTYAVPM 94
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I I R + + + IR+ S + KI + L+ +L R PT +E+ E L +
Sbjct: 95 IVGEIRRFLRD-DQAIRISRSTKELGVKILKEKEALTVKLGREPTIAELEETLGYSREAI 153
Query: 262 RLAIERTRHPISLDGAV--TDRGCMTMQDIIP--GPDE-TMPERMVXXXXXXXXXXXXXX 316
A+E + SL V D + + D I G +E T+ E +
Sbjct: 154 VEALEAGQSLASLFETVHQDDGDPIYLLDQIKQEGDEEQTLLENI--------SIKEVLS 205
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
L RE IL F + +T + EI R L +S+ ++ ++ AL KL++
Sbjct: 206 KLEPRERYILINRFFKE-KTQM---EIARTLGISQVQVSRLERQALLKLKR 252
>UNIPROTKB|Q884V7 [details] [associations]
symbol:fliA "Motility sigma factor FliA" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016853
GenomeReviews:AE016853_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 HSSP:P00579 OMA:FIERYSV RefSeq:NP_791802.1
ProteinModelPortal:Q884V7 GeneID:1183624 KEGG:pst:PSPTO_1979
PATRIC:19995230 BioCyc:PSYR223283:GJIX-2019-MONOMER Uniprot:Q884V7
Length = 246
Score = 131 (51.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 58/241 (24%), Positives = 100/241 (41%)
Query: 133 YKILCK-ERESQERIIRSYRSLVVSIATGYQGK---GLSLKDLIQEGSIGLLRGAKRFNP 188
Y++ K R SQ +I Y LV IA + + ++DLIQ G IGLL + +++
Sbjct: 6 YQMYSKTSRNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDS 65
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
+G TY I+ A++ + P S+ +++A + + R D
Sbjct: 66 TKGASFETYAGIRIRGAMLDEVRKGDWA---PRSVHRNTRMVSDAIRAIEAKTGRDAKDH 122
Query: 249 EIAEMLNIHVSTVRLAIERT--RHPISLDGAVTDRGCMTM-QDIIPGPDETMPERMVXXX 305
E+A L + + + T S D + D + +D G E P R +
Sbjct: 123 EVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLE--PSRDLEDE 180
Query: 306 XXXXXXXXXXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
L ERE +L L++ D + ++ KEIG +L +S R+ Q+ +L
Sbjct: 181 RFQAALADAIANLPERERLVLALYY--DEE--LNLKEIGEVLGVSESRVSQLHSQCAARL 236
Query: 366 Q 366
+
Sbjct: 237 R 237
>UNIPROTKB|Q48GG2 [details] [associations]
symbol:fliA "RNA polymerase sigma factor for flagellar
operon" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR012845
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0019861
GO:GO:0006355 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000058
GenomeReviews:CP000058_GR GO:GO:0016987 GO:GO:0003899
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 ProtClustDB:PRK06986
TIGRFAMs:TIGR02479 RefSeq:YP_275521.1 ProteinModelPortal:Q48GG2
STRING:Q48GG2 GeneID:3558449 KEGG:psp:PSPPH_3363 PATRIC:19976132
OMA:FIERYSV Uniprot:Q48GG2
Length = 239
Score = 128 (50.1 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 56/233 (24%), Positives = 96/233 (41%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGK---GLSLKDLIQEGSIGLLRGAKRFNPERGYKLST 196
R SQ +I Y LV IA + + ++DLIQ G IGLL + +++ +G T
Sbjct: 7 RNSQYELIERYAPLVKRIAYHLLARLPASVQVEDLIQAGMIGLLEVSTKYDSTKGASFET 66
Query: 197 YVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNI 256
Y I+ A++ + P S+ +++A + + R D E+A L +
Sbjct: 67 YAGIRIRGAMLDEVRKGDWA---PRSVHRNTRMVSDAIRAIEAKTGRDAKDHEVAAELQL 123
Query: 257 HVSTVRLAIERT--RHPISLDGAVTDRGCMTM-QDIIPGPDETMPERMVXXXXXXXXXXX 313
+ + T S D + D + +D G E P R +
Sbjct: 124 SLDDYYGILNDTLGSRLFSFDDLLQDGDHEGLHEDGASGSLE--PSRDLEDERFQAALAD 181
Query: 314 XXXTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
L ERE +L L++ D + ++ KEIG +L +S R+ Q+ +L+
Sbjct: 182 AIANLPERERLVLALYY--DEE--LNLKEIGEVLGVSESRVSQLHSQCAARLR 230
>TIGR_CMR|CHY_0143 [details] [associations]
symbol:CHY_0143 "RNA polymerase sigma-70 factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
RefSeq:YP_359015.1 ProteinModelPortal:Q3AFR9 STRING:Q3AFR9
GeneID:3727112 KEGG:chy:CHY_0143 PATRIC:21273477
eggNOG:firmNOG17516 BioCyc:CHYD246194:GJCN-143-MONOMER
Uniprot:Q3AFR9
Length = 175
Score = 115 (45.5 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 126 LDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKR 185
+D L K++ K RE E ++ R L+ A Y+ L+ +DL+QEG I ++ R
Sbjct: 1 MDRFLEKWQKARKSREGMEELLNYLRPLIKKAAQRYRNPYLTEEDLMQEGMIAVIESVYR 60
Query: 186 FNPERGYKLSTYVYWWIKQAIIRAI-ANKSR 215
F+PERG YV + I + A K+R
Sbjct: 61 FDPERGVYFLKYVREMVYGRIYSLLRAEKAR 91
>TIGR_CMR|CHY_2333 [details] [associations]
symbol:CHY_2333 "RNA polymerase sigma-H factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000792 InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR013249 InterPro:IPR013325
InterPro:IPR014218 InterPro:IPR014284 InterPro:IPR016032
InterPro:IPR016371 Pfam:PF04542 Pfam:PF08281 PIRSF:PIRSF002939
PROSITE:PS00622 PROSITE:PS00715 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0043565 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
SUPFAM:SSF46894 GO:GO:0016987 eggNOG:COG1595 SUPFAM:SSF88946
TIGRFAMs:TIGR02937 KO:K03091 RefSeq:YP_361138.1
ProteinModelPortal:Q3A9P6 STRING:Q3A9P6 GeneID:3727703
KEGG:chy:CHY_2333 PATRIC:21277733 HOGENOM:HOG000219029 OMA:AKARSYF
ProtClustDB:PRK08295 BioCyc:CHYD246194:GJCN-2332-MONOMER
TIGRFAMs:TIGR02859 Uniprot:Q3A9P6
Length = 217
Score = 105 (42.0 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ ++ E II Y++ V S A Y G +D+IQEG IGL + + F P++ +
Sbjct: 31 DEQALEYIINKYKNFVRSKARAYFLIGADREDIIQEGMIGLYKAVRDFRPDKLSSFRAFA 90
Query: 199 YWWIKQAIIRAIANKSRTIRLP 220
+ + II AI +R +P
Sbjct: 91 ELCVTRQIITAIKTATRQKHIP 112
Score = 41 (19.5 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 249 EIAEMLNIHVSTVRLAIERTRHPI 272
EIA LN HV ++ A++R + +
Sbjct: 184 EIACELNRHVKSIDNALQRVKRKL 207
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 379 305 0.00098 115 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 67
No. of states in DFA: 603 (64 KB)
Total size of DFA: 193 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.27u 0.09s 21.36t Elapsed: 00:00:02
Total cpu time: 21.28u 0.09s 21.37t Elapsed: 00:00:02
Start: Mon May 20 18:20:29 2013 End: Mon May 20 18:20:31 2013