BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046578
(379 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/246 (70%), Positives = 216/246 (87%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K+LC RES+ERI +SYR LVVSIA YQGKGLSL+DLIQEGSIGLLRGA+RF+P+RGYK
Sbjct: 181 KMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYK 240
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTYVYWWI+QAI+RAIANKSR IRLPGS+ MVAKIAEA VLSRRLRR+PT EIAE
Sbjct: 241 LSTYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEF 300
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++++VSTVRL ER+R PIS+D AVT +GCMT+Q+IIPGPDET P++MV++QLMKQE++
Sbjct: 301 IDVNVSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVER 360
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TL EREA ILRL+FG++G+TP+S +EIGRL+ LSRER+RQI IAL+KL+QT++++
Sbjct: 361 ALNTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDY 420
Query: 374 LKVYMV 379
LK+YM+
Sbjct: 421 LKLYMM 426
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 174/246 (70%), Positives = 216/246 (87%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K+LC RES+ERI +SYR LVVSIA YQGKGLSL+DLIQEGSIGLLRGA+RF+P+RGYK
Sbjct: 74 KMLCNGRESRERINQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYK 133
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTYVYWWI+QAI+RAIANKSR IRLPGS+ MVAKIAEA VLSRRLRR+PT EIAE
Sbjct: 134 LSTYVYWWIRQAIVRAIANKSRIIRLPGSICEMVAKIAEARTVLSRRLRRLPTYDEIAEF 193
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++++VSTVRL ER+R PIS+D AVT +GCMT+Q+IIPGPDET P++MV++QLMKQE++
Sbjct: 194 IDVNVSTVRLVSERSRTPISVDQAVTSQGCMTLQEIIPGPDETTPQKMVKRQLMKQEVER 253
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TL EREA ILRL+FG++G+TP+S +EIGRL+ LSRER+RQI IAL+KL+QT++++
Sbjct: 254 ALNTLCEREAYILRLYFGINGETPLSFEEIGRLMKLSRERVRQINSIALSKLRQTSVVDY 313
Query: 374 LKVYMV 379
LK+YM+
Sbjct: 314 LKLYMM 319
>gi|15240693|ref|NP_196877.1| sigma factor 4 [Arabidopsis thaliana]
gi|75216509|sp|Q9ZSL6.1|SIGD_ARATH RecName: Full=RNA polymerase sigma factor sigD, chloroplastic;
Short=Sigma factor D; Short=Sigma-D; AltName: Full=RNA
polymerase sigma factor sig4; Short=Atsig4; Short=Sigma
factor 4; Flags: Precursor
gi|3983260|gb|AAC97954.1| sigma-like factor [Arabidopsis thaliana]
gi|4972296|dbj|BAA78110.1| RNA polymerase sigma subunit SigD [Arabidopsis thaliana]
gi|9758039|dbj|BAB08700.1| sigma-like factor [Arabidopsis thaliana]
gi|332004550|gb|AED91933.1| sigma factor 4 [Arabidopsis thaliana]
Length = 419
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 155/244 (63%), Positives = 207/244 (84%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ILC+ +E++E+I R YR LVVSIATGYQGKGL+L+DLIQEGSIGLLRGA+RF+P+RGYK
Sbjct: 171 EILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYK 230
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTYVYWWIKQAI+RAIA+KSR ++LPGSM + AK+AEA+NVL+R+LRR P+ EIAE
Sbjct: 231 LSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEH 290
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
LN++VS VRLA+ER+R P+SLD + G MT+Q+I+ GPDET PE MV+++ MK E+++
Sbjct: 291 LNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQ 350
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL +L+ RE+ +L L+FGL+G+TP+S +EIG+ L LSRER+RQI GIAL KL+ + +N+
Sbjct: 351 LLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVND 410
Query: 374 LKVY 377
LK+Y
Sbjct: 411 LKIY 414
>gi|357458317|ref|XP_003599439.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355488487|gb|AES69690.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 403
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 158/246 (64%), Positives = 205/246 (83%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K+L R+S+ER+ R YR LV SIA YQGKGLS++DLIQEG+IGLL GA++F+P RG K
Sbjct: 158 KVLINTRKSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKFDPNRGCK 217
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTYVYWWIKQ II+A+A KSR IRLPG GMVAKIAEANNVL RRLRR PT +EIAE+
Sbjct: 218 LSTYVYWWIKQGIIKALAKKSRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEV 277
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
LN++VSTV+L ER+R PISLD ++TD+ + +++IIPGP E +PE+MV++QLMKQ + +
Sbjct: 278 LNVNVSTVKLVSERSRQPISLDRSITDQSNLILKEIIPGPVEMIPEKMVERQLMKQGVVK 337
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL TL +RE +I+RL+FGL+G+TP+S +EIG+LL LSRERIRQI GIAL+KL+Q ++++
Sbjct: 338 LLNTLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLEQNTLVDS 397
Query: 374 LKVYMV 379
LK Y+V
Sbjct: 398 LKFYVV 403
>gi|357458321|ref|XP_003599441.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355488489|gb|AES69692.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 267
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/246 (64%), Positives = 205/246 (83%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K+L R+S+ER+ R YR LV SIA YQGKGLS++DLIQEG+IGLL GA++F+P RG K
Sbjct: 22 KVLINTRKSKERLARDYRGLVASIAAHYQGKGLSIQDLIQEGTIGLLHGAEKFDPNRGCK 81
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTYVYWWIKQ II+A+A KSR IRLPG GMVAKIAEANNVL RRLRR PT +EIAE+
Sbjct: 82 LSTYVYWWIKQGIIKALAKKSRLIRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEV 141
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
LN++VSTV+L ER+R PISLD ++TD+ + +++IIPGP E +PE+MV++QLMKQ + +
Sbjct: 142 LNVNVSTVKLVSERSRQPISLDRSITDQSNLILKEIIPGPVEMIPEKMVERQLMKQGVVK 201
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL TL +RE +I+RL+FGL+G+TP+S +EIG+LL LSRERIRQI GIAL+KL+Q ++++
Sbjct: 202 LLNTLDKREEEIVRLYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLEQNTLVDS 261
Query: 374 LKVYMV 379
LK Y+V
Sbjct: 262 LKFYVV 267
>gi|449464016|ref|XP_004149725.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 436
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/246 (60%), Positives = 194/246 (78%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ILC+ RES++R+IR Y LV+SIA YQGKGLSL+DL QEG+IGLL+GA+RF P RG+K
Sbjct: 191 RILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHK 250
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTY YWWI+QAIIRA+ KSR +RLPG M MVA+IAE NN L +L R PT+ E+AE
Sbjct: 251 LSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAES 310
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L +H+ST+RL +ER++ PIS++ V DR C+T+Q+I+PGPD PE MV ++LMKQELK
Sbjct: 311 LKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKR 370
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL TLS+REA IL L+FGL+G+ P S +EIG+ L+LSRE IRQ L+KL++T++L+
Sbjct: 371 LLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDY 430
Query: 374 LKVYMV 379
LK Y+V
Sbjct: 431 LKDYLV 436
>gi|449525642|ref|XP_004169825.1| PREDICTED: RNA polymerase sigma factor sigD, chloroplastic-like
[Cucumis sativus]
Length = 341
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 148/246 (60%), Positives = 194/246 (78%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ILC+ RES++R+IR Y LV+SIA YQGKGLSL+DL QEG+IGLL+GA+RF P RG+K
Sbjct: 96 RILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHK 155
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTY YWWI+QAIIRA+ KSR +RLPG M MVA+IAE NN L +L R PT+ E+AE
Sbjct: 156 LSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNKEVAES 215
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L +H+ST+RL +ER++ PIS++ V DR C+T+Q+I+PGPD PE MV ++LMKQELK
Sbjct: 216 LKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVMRKLMKQELKR 275
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL TLS+REA IL L+FGL+G+ P S +EIG+ L+LSRE IRQ L+KL++T++L+
Sbjct: 276 LLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLSKLKKTDVLDY 335
Query: 374 LKVYMV 379
LK Y+V
Sbjct: 336 LKDYLV 341
>gi|297811483|ref|XP_002873625.1| hypothetical protein ARALYDRAFT_909325 [Arabidopsis lyrata subsp.
lyrata]
gi|297319462|gb|EFH49884.1| hypothetical protein ARALYDRAFT_909325 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 140/217 (64%), Positives = 185/217 (85%)
Query: 161 YQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLP 220
YQGKGL+L+DLIQEGSIGLLRGA+RF+P+RGYKLSTYVYWWIKQAI+RAIA+KSR ++LP
Sbjct: 52 YQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLP 111
Query: 221 GSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTD 280
GSM + AK+AEA+NVL+R+LRR P+ EIAE LN+HVS VRLA+ER+R P+SLD V+
Sbjct: 112 GSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLHVSAVRLAVERSRSPVSLDRVVSQ 171
Query: 281 RGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSC 340
G MT+Q+I+ GPDET PE MV+++ MK E+++LL +L+ RE+ +L L+FGL+G+TP+S
Sbjct: 172 NGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSF 231
Query: 341 KEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
+EIG+ L LSRER+RQI GIAL KL+ + +N+LK+Y
Sbjct: 232 EEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 268
>gi|255553456|ref|XP_002517769.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223543041|gb|EEF44576.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 389
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 143/220 (65%), Positives = 176/220 (80%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KILCK R+S+ERI +YR LV+SIA Y+GKGLSL+DLIQEGSIGLLRGA+RF+P+RG K
Sbjct: 168 KILCKGRQSRERITGNYRRLVLSIANRYRGKGLSLQDLIQEGSIGLLRGAERFDPKRGNK 227
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTYVYWWIK+AII +I+ SR +R P S+ KIAEA L+ RL R+P+ EIA+
Sbjct: 228 LSTYVYWWIKEAIITSISINSRIVRQPRSLWDRTTKIAEAKISLTERLGRLPSYREIAKE 287
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
LN+HVSTVRL R+R +SLD AV+D+G MT+Q+IIPGP+E MPE MV+KQL+K+EL+E
Sbjct: 288 LNVHVSTVRLVFSRSRSTVSLDQAVSDQGGMTLQEIIPGPEEMMPENMVKKQLLKKELEE 347
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRER 353
L+QTL +REA LRL FGL+GQTP SC EIGR L L RER
Sbjct: 348 LIQTLGKREAHTLRLIFGLNGQTPQSCDEIGRSLKLCRER 387
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 161/236 (68%)
Query: 143 QERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWI 202
++R++ S LVVSIA YQG+G++++DLIQEGS+GL+RGA++F+ RG+K STY +WWI
Sbjct: 378 KDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSMGLIRGAEKFDHTRGFKFSTYAHWWI 437
Query: 203 KQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVR 262
+QAI RAIA++SRTIRLP + ++++I +A ++L+ R P D E+AE++ + + ++
Sbjct: 438 RQAITRAIADQSRTIRLPVHVYELLSRITKAKSMLAAEHGRAPRDEEVAELVGLSIEKLK 497
Query: 263 LAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSERE 322
+ I+ R P S++ V T+ ++IP D PE + K+L+KQ+L +L TLS RE
Sbjct: 498 MVIKSARSPKSMEFPVGKNNDTTLGEVIPDKDIDSPEEAISKRLLKQDLDVVLHTLSPRE 557
Query: 323 ADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D+LRL +GLD + +EIG + ++RERIRQI AL KL+Q + L+ Y+
Sbjct: 558 RDVLRLRYGLDDGRMRTLEEIGNVFKVTRERIRQIEAKALRKLRQPSRNTALREYL 613
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 178 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 237
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 238 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIE 297
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 298 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 356
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 357 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 178 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 237
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 238 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIE 297
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 298 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 356
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 357 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 178 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 237
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 238 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIE 297
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 298 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 356
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 357 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 110/255 (43%), Positives = 167/255 (65%), Gaps = 2/255 (0%)
Query: 125 ELDYNLVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGA 183
E+D L K++ L R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A
Sbjct: 139 EVDMPLQKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 198
Query: 184 KRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRR 243
++F+ E+GYK STY WWI+QAI RAIA++SRTIRLP + +++I + +LS+ L R
Sbjct: 199 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGR 258
Query: 244 MPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQ 303
PT+ EIAE + + + +R + + PISL+ + + D I ET PE V
Sbjct: 259 KPTEEEIAERMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVS 317
Query: 304 KQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363
K L++++L+++L TLS RE D+LRL +GL+ + +EIG++ +++RERIRQI AL
Sbjct: 318 KSLLREDLEDVLDTLSPRERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALR 377
Query: 364 KLQQTNILNNLKVYM 378
KL+ N + LK Y+
Sbjct: 378 KLRHPNRNSILKEYI 392
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 178 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 237
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 238 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIE 297
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 298 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 356
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 357 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 178 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 237
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 238 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIE 297
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 298 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 356
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 357 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 178 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 237
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 238 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIE 297
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 298 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 356
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 357 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 185/298 (62%), Gaps = 15/298 (5%)
Query: 95 ECESVLKMMRRRSRRKKRTKESDFLDK-ENGELDYNLVK-YKILCKE------------R 140
+ E++ +M+R +S ++K K S+ D + E+ +L K +K+ K R
Sbjct: 119 QWENIEQMLRAQSSKEKEPKWSEVTDMLQKAEIISDLEKTWKLESKAYLPKFKRRLYLGR 178
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++++++ S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY W
Sbjct: 179 KAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 238
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 239 WIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIEK 298
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 299 LRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLSP 357
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 358 RERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 178 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 237
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 238 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIE 297
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 298 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 356
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 357 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 178 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 237
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 238 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIE 297
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 298 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 356
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 357 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 159/243 (65%), Gaps = 1/243 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK S
Sbjct: 133 LFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 192
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY WWI+QAI RAIA++SRTIRLP + +++I + +LS+ L R PT+ EIAE +
Sbjct: 193 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAERME 252
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ + +R + + PISL+ + + D I ET PE V K L++++L+ +L
Sbjct: 253 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDQVSKSLLREDLENVL 311
Query: 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLK 375
TLS RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK
Sbjct: 312 DTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 371
Query: 376 VYM 378
Y+
Sbjct: 372 EYI 374
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 158/237 (66%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 248
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIAE + + + +
Sbjct: 249 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKL 308
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L TLS R
Sbjct: 309 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLSPR 367
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 368 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 424
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/243 (43%), Positives = 159/243 (65%), Gaps = 1/243 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK S
Sbjct: 149 LFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 208
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY WWI+QAI RAIA++SRTIRLP + +++I + +LS+ L R PT+ EIAE +
Sbjct: 209 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIAERME 268
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ + +R + + PISL+ + + D I ET PE V K L++++L+ +L
Sbjct: 269 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDQVSKSLLREDLENVL 327
Query: 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLK 375
TLS RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK
Sbjct: 328 DTLSARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILK 387
Query: 376 VYM 378
Y+
Sbjct: 388 EYI 390
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 158/237 (66%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 151 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 210
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ L R PT+ EIAE + + + +
Sbjct: 211 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELARKPTEEEIAERMEMTIEKL 270
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+++L TLS R
Sbjct: 271 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKSLLREDLEDVLDTLSPR 329
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +GL+ + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 330 ERDVLRLRYGLEDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 386
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 142 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 201
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ L R PT+ EIA+ + + +
Sbjct: 202 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIADRMEMTIE 261
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 262 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDQVSKNLLREDLESVLDTLS 320
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 321 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 379
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/274 (41%), Positives = 174/274 (63%), Gaps = 8/274 (2%)
Query: 112 RTKESDFLDKENG------ELDYNLVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGK 164
R + S+ L++E G E+D L ++ L R ++E++++S LVVSIA Y +
Sbjct: 100 RERLSEQLEREPGDREWATEVDMELPAFRYRLHVGRRAKEKMVQSNLRLVVSIAKKYMNR 159
Query: 165 GLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMA 224
GLS +DLIQEGS+GL+R A++F+ E+GYK STY WWI+QAI RAIA++SRTIRLP +
Sbjct: 160 GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 219
Query: 225 GMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCM 284
+++I + +LS+ + R PT+ EIA+ + + + +R + + PISL+ +
Sbjct: 220 ETISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 279
Query: 285 TMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIG 344
+ D I ET PE V K L++++L+ +L TLS RE D+LRL +GLD + +EIG
Sbjct: 280 RLGDFIEADGET-PEDQVSKNLLREDLESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIG 338
Query: 345 RLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 339 QIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 372
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 136 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 195
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 196 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIE 255
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 256 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 314
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 315 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 373
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 223 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 282
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 283 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 342
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I D PE+ V K L++++L+ +L TLS
Sbjct: 343 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIES-DTENPEQDVAKNLLREDLEGVLATLS 401
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 402 PRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLKEYI 460
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++++++ S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 178 RKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 237
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 238 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIE 297
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 298 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 356
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 357 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++++++ S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 182 RKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 241
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 242 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIE 301
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 302 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVAKNLLREDLENVLDTLS 360
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 361 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 419
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 138 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 197
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 198 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIE 257
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 258 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 316
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 317 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 375
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 139 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 198
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 199 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIE 258
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 259 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 317
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 318 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 376
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++++++ S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 176 RRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 235
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 236 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIATRMEMTIE 295
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 296 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 354
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 355 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 413
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 206 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 265
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 266 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 325
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 326 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDTEN-PEQDVAKNLLREDLEGVLATLS 384
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 385 PRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHPNRNGVLKEYI 443
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/269 (41%), Positives = 169/269 (62%), Gaps = 8/269 (2%)
Query: 117 DFLDKENGELDY-NLVKYKI------LCKERESQERIIRSYRSLVVSIATGYQGKGLSLK 169
D LD E + D+ N V + L + R +++++++S LVVSIA Y +GLS +
Sbjct: 136 DQLDDEPTDADWANAVDMPLPAFRRRLYQGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 195
Query: 170 DLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAK 229
DLIQEGS+GL+R A++F+ E+GYK STY WWI+QAI RAIA++SRTIRLP + +++
Sbjct: 196 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR 255
Query: 230 IAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDI 289
I + +LS+ L R PT+ EIA + + + +R + + PISL+ + + D
Sbjct: 256 IKKTTKLLSQELGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF 315
Query: 290 IPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSL 349
I ET PE V K L++++L+ +L TLS RE D+LRL +GLD + +EIG++ ++
Sbjct: 316 IESDGET-PEDEVSKSLLREDLESVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNV 374
Query: 350 SRERIRQIRGIALTKLQQTNILNNLKVYM 378
+RERIRQI AL KL+ N + LK Y+
Sbjct: 375 TRERIRQIEAKALRKLRHPNRNSVLKEYI 403
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 167/243 (68%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L K R ++++++ S LVVSIA YQG+G++L+DLIQEGS+GL+RGA++F+P +G+K S
Sbjct: 330 LKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAEKFDPTKGFKFS 389
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY +WWI+QA+ R+IA++SRTIRLP + ++++I +A +L + R + E+AE++
Sbjct: 390 TYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKAKRMLVQEHGREARNEEVAELVG 449
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ V ++ ++ + P S++ + G T+ +++ D PE + KQLM+Q+++ +L
Sbjct: 450 LTVEKLKSVVKSAKAPGSMERPIGKDGDTTLGELVADTDVDSPEDAIVKQLMRQDIEGVL 509
Query: 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLK 375
+TL+ RE ++LRL FGLD + +EIG++ ++RERIRQI A+ KL+Q + + L+
Sbjct: 510 RTLNPREREVLRLRFGLDDGRSKTLEEIGQIFKVTRERIRQIEAKAMRKLRQPSRNSILR 569
Query: 376 VYM 378
Y+
Sbjct: 570 EYL 572
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 141 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 200
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ L R PT+ EIA + + +
Sbjct: 201 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQELGRKPTEEEIATRMEMTIE 260
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 261 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDQVSKSLLREDLENVLDTLS 319
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 320 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 378
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 205 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 264
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 265 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 324
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 325 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLREDLEGVLATLS 383
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 384 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 442
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 135 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 194
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA+ + + +
Sbjct: 195 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIADRMEMTIE 254
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 255 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDQVSKNLLREDLESVLDTLS 313
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 314 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 372
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 157/237 (66%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 144 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 203
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIAE + + + +
Sbjct: 204 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIAERMEMTIEKL 263
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L TLS R
Sbjct: 264 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDQVSKSLLREDLENVLDTLSPR 322
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 323 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 379
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 209 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 268
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 269 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 328
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 329 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLREDLEGVLATLS 387
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 388 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 446
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 150 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 209
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 210 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 269
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 270 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLESVLDTLS 328
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 329 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 387
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 162/254 (63%), Gaps = 2/254 (0%)
Query: 126 LDYNLVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
+D L+K++ L R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A+
Sbjct: 250 VDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 309
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F+ E+GYK STY WWI+QAI RAIA++SRTIRLP + +++I + LS+ R
Sbjct: 310 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRK 369
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT+ EIAE + + + +R + + PISL+ + + D I D PE+ V K
Sbjct: 370 PTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEA-DIENPEQDVAK 428
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
L++++L+ +L TLS RE D+LRL +GLD + +EIG++ ++RERIRQI AL K
Sbjct: 429 NLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRK 488
Query: 365 LQQTNILNNLKVYM 378
L+ N LK Y+
Sbjct: 489 LRHPNRNGVLKEYI 502
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 200 bits (508), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 231 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 290
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 291 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 350
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 351 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLREDLEGVLATLS 409
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 410 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 468
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 213 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 272
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 273 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 332
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 333 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLREDLEGVLATLS 391
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 392 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 160/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R++++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 148 RKAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 207
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+++ R PT+ EIAE + + +
Sbjct: 208 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIE 267
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L +LS
Sbjct: 268 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDSLS 326
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 327 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 385
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 162/254 (63%), Gaps = 2/254 (0%)
Query: 126 LDYNLVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
+D L+K++ L R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A+
Sbjct: 211 VDMPLIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 270
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F+ E+GYK STY WWI+QAI RAIA++SRTIRLP + +++I + LS+ R
Sbjct: 271 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRK 330
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT+ EIAE + + + +R + + PISL+ + + D I E PE+ V K
Sbjct: 331 PTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAK 389
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
L++++L+ +L TLS RE D+LRL +GLD + +EIG++ ++RERIRQI AL K
Sbjct: 390 NLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRK 449
Query: 365 LQQTNILNNLKVYM 378
L+ N LK Y+
Sbjct: 450 LRHPNRNGVLKEYI 463
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 150 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 209
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 210 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 269
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 270 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLESVLDTLS 328
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 329 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 387
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 213 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 272
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 273 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 332
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 333 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLREDLEGVLATLS 391
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 392 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 450
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 212 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 271
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 272 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 331
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 332 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLREDLEGVLATLS 390
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 391 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 449
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 180 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 239
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 240 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 299
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 300 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKTLLREDLEGVLATLS 358
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 359 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 417
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 174/274 (63%), Gaps = 8/274 (2%)
Query: 112 RTKESDFLDKENGELDY------NLVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGK 164
R K SD LD+E + ++ NL ++ L R +++++++S LVVSIA Y +
Sbjct: 119 REKLSDRLDREPQDSEWAEAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNR 178
Query: 165 GLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMA 224
GLS +DLIQEGS+GL+R A++F+ E+GYK STY WWI+QAI RAIA++SRTIRLP +
Sbjct: 179 GLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 238
Query: 225 GMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCM 284
+++I + +LS+ + R PT+ EIA + + + +R + + PISL+ +
Sbjct: 239 ETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDS 298
Query: 285 TMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIG 344
+ D I ET PE V K L++++L+++L +LS RE D+LRL +GLD + +EIG
Sbjct: 299 RLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIG 357
Query: 345 RLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 358 QIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 391
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++++++ S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 141 RKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 200
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 201 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATRMEMTIE 260
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE V K L++++L+ +L TLS
Sbjct: 261 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGEN-PEDEVSKNLLREDLENVLDTLS 319
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 320 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 378
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 159/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 153 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 212
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+++ R PT+ EIAE + + +
Sbjct: 213 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKMLSQKMGRKPTEEEIAEDMEMTIE 272
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L +LS
Sbjct: 273 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDSLS 331
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 332 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 390
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 180 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 239
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 240 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 299
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 300 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKTLLREDLEGVLATLS 358
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 359 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 417
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 233 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 292
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 293 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 352
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 353 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLREDLEGVLATLS 411
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 412 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 470
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 218 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 277
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 278 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 337
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 338 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLREDLEGVLATLS 396
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 397 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 455
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 220 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 279
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 280 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 339
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 340 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLREDLEGVLATLS 398
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 399 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 457
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 159/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 180 RKAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 239
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA+ + + +
Sbjct: 240 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIADRMEMTIE 299
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 300 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKHLLREDLETVLCTLS 358
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+L+L +GLD + +EIG+L +++RERIRQI AL KL+ N + LK Y+
Sbjct: 359 PRERDVLKLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 417
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 144 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 203
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIAE + + +
Sbjct: 204 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIAERMEMTIE 263
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 264 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKHLLREDLETVLCTLS 322
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+L+L +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 323 PRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 381
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 162 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 221
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ L R PT+ EIA + + +
Sbjct: 222 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIE 281
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 282 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDKVAKNLLREDLEAVLNTLS 340
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG+L +++RERIRQI AL KL+ N + LK Y+
Sbjct: 341 PRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 399
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 197 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 256
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 257 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 316
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 317 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLREDLEGVLATLS 375
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 376 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 434
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 162/248 (65%), Gaps = 2/248 (0%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
++++ C R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+
Sbjct: 141 FRHRLHCGRR-AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEK 199
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
GYK STY WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EI
Sbjct: 200 GYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEI 259
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
A + + + +R + + PISL+ + + D I ET PE V K L++++
Sbjct: 260 ATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLRED 318
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L+ +L TLS RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N
Sbjct: 319 LESVLDTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNR 378
Query: 371 LNNLKVYM 378
+ LK Y+
Sbjct: 379 NSILKEYI 386
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 163/254 (64%), Gaps = 2/254 (0%)
Query: 126 LDYNLVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
++ +L+K++ L R ++ ++++S LVVSIA Y +GLS +DLIQEGS+GL+R A+
Sbjct: 207 VEMSLIKFRRRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 266
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F+ E+GYK STY WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R
Sbjct: 267 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRK 326
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT+ EIAE + + + +R + + PISL+ + + D I E PE+ V K
Sbjct: 327 PTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAK 385
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
L++++L+ +L TLS RE D+LRL +GLD + +EIG++ ++RERIRQI AL K
Sbjct: 386 NLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRK 445
Query: 365 LQQTNILNNLKVYM 378
L+ N LK Y+
Sbjct: 446 LRHPNRNGVLKEYI 459
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 161/250 (64%), Gaps = 2/250 (0%)
Query: 130 LVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
L+K++ L R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+
Sbjct: 230 LIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 289
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
E+GYK STY WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+
Sbjct: 290 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEE 349
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMK 308
EIAE + + + +R + + PISL+ + + D I E PE+ V K L++
Sbjct: 350 EIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLR 408
Query: 309 QELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
++L+ +L TLS RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+
Sbjct: 409 EDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHP 468
Query: 369 NILNNLKVYM 378
N LK Y+
Sbjct: 469 NRNGVLKEYI 478
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/254 (41%), Positives = 164/254 (64%), Gaps = 2/254 (0%)
Query: 125 ELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
EL N +Y++ R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A+
Sbjct: 134 ELPINSFRYRLHVGRR-AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 192
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F+ E+GYK STY WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R
Sbjct: 193 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRK 252
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT+ EIA + + + +R + + PISL+ + + D I ET PE V K
Sbjct: 253 PTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSK 311
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
L++++L+++L LS RE D+LRL +GLD + +EIG++ +++RERIRQI AL K
Sbjct: 312 NLLREDLEKVLDGLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRK 371
Query: 365 LQQTNILNNLKVYM 378
L+ N + LK Y+
Sbjct: 372 LRHPNRNSVLKEYI 385
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 164/254 (64%), Gaps = 2/254 (0%)
Query: 126 LDYNLVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
+D L K+K L R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A+
Sbjct: 133 VDMELPKFKRRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 192
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F+ E+GYK STY WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R
Sbjct: 193 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRK 252
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT+ EIA + + + +R + + PISL+ + + D I ET PE V K
Sbjct: 253 PTEEEIATSMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDEVSK 311
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
L++++L+ +L +LS RE D+LRL +GLD + +EIG++ +++RERIRQI AL K
Sbjct: 312 NLLREDLESVLNSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRK 371
Query: 365 LQQTNILNNLKVYM 378
L+ N + LK Y+
Sbjct: 372 LRHPNRNSILKEYI 385
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 145 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 204
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 205 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 264
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 265 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLESVLDTLS 323
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 324 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 382
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 142 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 201
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 202 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 261
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I D MPE V K L++++L+ +L TLS
Sbjct: 262 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEA-DGEMPEDQVSKSLLREDLEGVLDTLS 320
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 321 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 379
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 202 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 261
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 262 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 321
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS
Sbjct: 322 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLREDLEGVLATLS 380
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 381 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 439
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 160/250 (64%), Gaps = 2/250 (0%)
Query: 130 LVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
LVK++ L R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+
Sbjct: 221 LVKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 280
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
E+GYK STY WWI+QAI RAIA++SRTIRLP + +++I + LS+ R PT+
Sbjct: 281 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRKPTEE 340
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMK 308
EIAE + + + +R + + PISL+ + + D I E PE+ V K L++
Sbjct: 341 EIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAKNLLR 399
Query: 309 QELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
++L+ +L TLS RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+
Sbjct: 400 EDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHP 459
Query: 369 NILNNLKVYM 378
N LK Y+
Sbjct: 460 NRNGVLKEYI 469
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 156/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 138 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 197
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 198 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMGRKPTEEEIATHMEMTIE 257
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L +LS
Sbjct: 258 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDDVSKNLLREDLEHVLDSLS 316
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N + LK Y+
Sbjct: 317 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNSILKEYV 375
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 153 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 212
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 213 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 272
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 273 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLESVLDTLS 331
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 332 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 390
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 152 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 211
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 212 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 271
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 272 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 330
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 331 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 164/247 (66%), Gaps = 1/247 (0%)
Query: 133 YKILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
+++ KE R S+++++ S LVVSI YQG+G++L DLIQEGS+GL+RGA++F+P++G
Sbjct: 340 FELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAEKFDPDKG 399
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
+K STY +WWI+QA+ RAIA++SR IRLP + ++++I +A +L + R P D E+A
Sbjct: 400 FKFSTYAHWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKAKKMLIQEHGRQPRDEEVA 459
Query: 252 EMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQEL 311
E++ + V ++ ++ + P S+D + ++ ++I D PE + +Q++KQ++
Sbjct: 460 ELVGMSVEKLKFIVKSAKTPSSMDRLIGKEKDQSIGEMIADKDVESPEDDLIRQVLKQDV 519
Query: 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
+L TL+ RE ++LRL FGLD + +EIG L ++RERIRQI A+ KL+Q +
Sbjct: 520 DGVLCTLNPREREVLRLRFGLDDGQSRTLEEIGTLFKVTRERIRQIEAKAMRKLRQPSRN 579
Query: 372 NNLKVYM 378
L+ Y+
Sbjct: 580 GVLREYL 586
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 144 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 203
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 204 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 263
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 264 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVAKNLLREDLENVLDTLS 322
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 323 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 381
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 154 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 213
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 214 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 273
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 274 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 332
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 333 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 391
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 153 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 212
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 213 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 272
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 273 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 331
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 332 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 390
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 152 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 211
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 212 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 271
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 272 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKSLLREDLEKVLDSLS 330
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 331 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 165/255 (64%), Gaps = 2/255 (0%)
Query: 125 ELDYNLVKYK-ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGA 183
E+D L K+K L R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A
Sbjct: 139 EMDMPLDKFKNRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 198
Query: 184 KRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRR 243
++F+ E+GYK STY WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R
Sbjct: 199 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGR 258
Query: 244 MPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQ 303
P++ EIA + + + +R + + PISL+ + + D I ET P+ V
Sbjct: 259 KPSEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PDDQVA 317
Query: 304 KQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363
K L++++L+ +L TLS RE D+LRL +GLD + +EIG++ +++RERIRQI AL
Sbjct: 318 KNLLREDLESVLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 377
Query: 364 KLQQTNILNNLKVYM 378
KL+ N + LK Y+
Sbjct: 378 KLRHPNRNSVLKEYI 392
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 112/269 (41%), Positives = 170/269 (63%), Gaps = 8/269 (2%)
Query: 117 DFLDKE------NGELDYNLVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGKGLSLK 169
D LD+E GE+D L ++ L R +++++++S LVVSIA Y +GLS +
Sbjct: 110 DKLDREPQDQEWAGEVDMPLQSFRHRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 169
Query: 170 DLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAK 229
DLIQEGS+GL+R A++F+ E+GYK STY WWI+QAI RAIA++SRTIRLP + +++
Sbjct: 170 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR 229
Query: 230 IAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDI 289
I + +LS+ + R PT+ EIA + + + +R + + PISL+ + + D
Sbjct: 230 IKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF 289
Query: 290 IPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSL 349
I ET PE V K L++++L+ +L TLS RE D+L+L +GLD + +EIG+L ++
Sbjct: 290 IESDGET-PEDQVSKNLLREDLETVLCTLSPRERDVLKLRYGLDDGRMKTLEEIGQLFNV 348
Query: 350 SRERIRQIRGIALTKLQQTNILNNLKVYM 378
+RERIRQI AL KL+ N + LK Y+
Sbjct: 349 TRERIRQIEAKALRKLRHPNRNSVLKEYI 377
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 155/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 163 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 222
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R PT+ EIAE + + +
Sbjct: 223 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIE 282
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E P++ V K L++++L+ +L TLS
Sbjct: 283 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PDQDVAKNLLREDLEGVLATLS 341
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 342 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALLKLRHPNRNGVLKEYI 400
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 134 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 193
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 194 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 253
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 254 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDQVSKSLLREDLENVLDTLS 312
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 313 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 371
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 153 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 212
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 213 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 272
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 273 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLESVLDTLS 331
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 332 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 390
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 148 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 207
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + + +
Sbjct: 208 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKL 267
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L TLS R
Sbjct: 268 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVAKNLLREDLEGVLSTLSPR 326
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +GLD + +EIG+L +++RERIRQI AL KL+ N + LK Y+
Sbjct: 327 ERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 383
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 151 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 210
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 211 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 270
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 271 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 329
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 330 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 388
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 152 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 211
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 212 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 271
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 272 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 330
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 331 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 152 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 211
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 212 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 271
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 272 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 330
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 331 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 152 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 211
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 212 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 271
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 272 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 330
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 331 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 157/237 (66%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 167 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 226
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ L R PT+ EIA + I + +
Sbjct: 227 IRQAITRAIADQSRTIRLPVHLYETISRIKKVTKLLSQELGRKPTEEEIATRMEITIEKL 286
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L+TL+ R
Sbjct: 287 RFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDRVAKVLLREDLESVLETLTAR 345
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+L+L +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 346 ERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 402
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 153 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 212
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 213 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 272
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 273 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 331
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 332 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 390
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 163 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 222
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + + +
Sbjct: 223 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKL 282
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L TLS R
Sbjct: 283 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVAKNLLREDLEGVLSTLSPR 341
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +GLD + +EIG+L +++RERIRQI AL KL+ N + LK Y+
Sbjct: 342 ERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 163 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 222
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + + +
Sbjct: 223 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKL 282
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L TLS R
Sbjct: 283 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVAKNLLREDLEGVLSTLSPR 341
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +GLD + +EIG+L +++RERIRQI AL KL+ N + LK Y+
Sbjct: 342 ERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 152 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 211
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 212 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 271
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 272 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 330
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 331 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 160/254 (62%), Gaps = 2/254 (0%)
Query: 126 LDYNLVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
D L+K++ L R ++E+++ S LVVSIA Y +GLS +DLIQEGS+GL+R A+
Sbjct: 179 FDMPLIKFRRRLMLGRRAKEKMVLSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAE 238
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F+ E+GYK STY WWI+QAI RAIA++SRTIRLP + +++I + LS+ R
Sbjct: 239 KFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKTLSQEFGRK 298
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT+ EIAE + + + +R + + PISL+ + + D I E PE+ V K
Sbjct: 299 PTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVAK 357
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
L++++L+ +L TLS RE D+LRL +GLD + +EIG++ ++RERIRQI AL K
Sbjct: 358 NLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRK 417
Query: 365 LQQTNILNNLKVYM 378
L+ N LK Y+
Sbjct: 418 LRHPNRNGVLKEYI 431
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 197 bits (501), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 154/239 (64%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 187 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 246
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + VLS+ R P++ EIAE + + +
Sbjct: 247 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIE 306
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I E PE V K L++++L+ +L TLS
Sbjct: 307 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDSEN-PELDVAKTLLREDLEGVLATLS 365
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 366 PRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 424
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 153 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 212
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 213 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 272
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 273 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 331
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 332 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 390
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 151 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 210
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + + +
Sbjct: 211 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKL 270
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L TLS R
Sbjct: 271 RFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLESVLDTLSPR 329
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 330 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 386
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 151 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 210
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 211 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 270
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 271 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 329
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 330 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 388
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 136 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 195
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + + +
Sbjct: 196 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKL 255
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L TLS R
Sbjct: 256 RFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLESVLDTLSPR 314
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 315 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 371
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 138 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 197
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ L R PT+ EIA + + +
Sbjct: 198 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQELGRKPTEEEIATRMEMTIE 257
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 258 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDEVSKSLLREDLEGVLSTLS 316
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 317 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 375
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 155 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 214
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 215 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 274
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 275 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 333
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 334 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 392
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 143 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 202
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 203 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 262
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 263 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLESVLGTLS 321
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 322 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 380
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 151 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 210
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + + +
Sbjct: 211 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKL 270
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L TLS R
Sbjct: 271 RFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLESVLDTLSPR 329
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 330 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 386
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 165/255 (64%), Gaps = 2/255 (0%)
Query: 125 ELDYNLVKYKI-LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGA 183
E+D L +++ L R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A
Sbjct: 117 EVDMPLNRFRHRLHAGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 176
Query: 184 KRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRR 243
++F+ E+GYK STY WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R
Sbjct: 177 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGR 236
Query: 244 MPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQ 303
PT+ EIA + + + +R + + PISL+ + + D I ET PE V
Sbjct: 237 KPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVS 295
Query: 304 KQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363
K L++++L+ +L TLS RE D+L+L +GLD + +EIG++ +++RERIRQI AL
Sbjct: 296 KSLLREDLETVLDTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALR 355
Query: 364 KLQQTNILNNLKVYM 378
KL+ N + LK Y+
Sbjct: 356 KLRHPNRNSVLKEYI 370
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 168 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 227
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + LS+ L R PT+ EIA + I + +
Sbjct: 228 IRQAITRAIADQSRTIRLPVHLYETISRIKKVTKQLSQELGRRPTEEEIATRMEITIEKL 287
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L+TL+ R
Sbjct: 288 RFIAKSAQLPISLETPIGKEEDSRLGDFIESEGET-PEERVAKVLLREDLESVLETLTPR 346
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+L+L +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 347 ERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 403
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 152/236 (64%), Gaps = 1/236 (0%)
Query: 143 QERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWI 202
+E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WWI
Sbjct: 203 KEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWI 262
Query: 203 KQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVR 262
+QAI RAIA++SRTIRLP + +++I + VLS+ R P++ EIAE + + + +R
Sbjct: 263 RQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKLR 322
Query: 263 LAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSERE 322
+ + PISL+ + + D I E PE V K L++++L+ +L TLS RE
Sbjct: 323 FIAKSAQLPISLETPIGKEEDSRLGDFIESDSEN-PELDVAKTLLREDLEGVLATLSPRE 381
Query: 323 ADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D+LRL +GLD + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 382 RDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 437
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 134 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 193
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 194 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 253
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 254 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDEVSKSLLREDLESVLGTLS 312
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 313 ARERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 371
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 151 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 210
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 211 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 270
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 271 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKSLLREDLEKVLDSLS 329
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 330 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 388
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/243 (41%), Positives = 159/243 (65%), Gaps = 1/243 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK S
Sbjct: 170 LYEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 229
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA +
Sbjct: 230 TYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRME 289
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ + +R + + PISL+ + + D I ET P+ V K L++++L+ +L
Sbjct: 290 MTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PDDQVAKNLLREDLENVL 348
Query: 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLK 375
TLS RE D+L+L +GLD + +EIG++ +++RERIRQI AL KL+ N + LK
Sbjct: 349 GTLSPRERDVLKLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLK 408
Query: 376 VYM 378
Y+
Sbjct: 409 EYI 411
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 160 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 219
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + VLS+ R P++ EIAE + + + +
Sbjct: 220 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 279
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS R
Sbjct: 280 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVSKTLLREDLEGVLATLSPR 338
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +G+D + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 339 ERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 395
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 157 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 216
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + VLS+ R P++ EIAE + + + +
Sbjct: 217 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 276
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS R
Sbjct: 277 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVSKTLLREDLEGVLATLSPR 335
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +G+D + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 336 ERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 157 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 216
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + VLS+ R P++ EIAE + + + +
Sbjct: 217 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 276
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS R
Sbjct: 277 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVSKTLLREDLEGVLATLSPR 335
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +G+D + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 336 ERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 177/285 (62%), Gaps = 2/285 (0%)
Query: 84 NGAEEVCFDDGECESVLKMMRRRSRRKKRTKESDFLDKENGELDYNLVKYKILCKE-RES 142
+ +EEV + + +LK+ + R+ ++ L + + + + ++ KE R +
Sbjct: 285 SASEEVALSR-KIQDILKLEKIRAELQRDIGREPTLSEWSQAVSLDQTSLELRVKEGRSA 343
Query: 143 QERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWI 202
+++++ S LVVSI YQG+G++L DLIQEGS+GL+RGA++F+PE GYK STY WWI
Sbjct: 344 KDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEKFDPEMGYKFSTYATWWI 403
Query: 203 KQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVR 262
+QA+ RAIA++SR IRLP + ++++I +A +S+ L R P D E+A M+ + V +
Sbjct: 404 RQAVTRAIADQSRIIRLPVHIYEVISRINKAKMTISQELGRQPRDEEVAAMVGMSVEKLL 463
Query: 263 LAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSERE 322
++ R P S+D + G ++ +++ PE + Q++KQ+++++L++L+ E
Sbjct: 464 FIVKSARPPTSMDRPIGKDGEQSLGEMVADKGVGSPEDDIMTQVLKQDIEDVLRSLNPME 523
Query: 323 ADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
++LRL FGL G ++ K++G + ++RERIRQI AL KL+
Sbjct: 524 REVLRLRFGLSGAQSMTLKDLGIIFKVTRERIRQIEAKALRKLRH 568
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 161 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 220
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + VLS+ R P++ EIAE + + + +
Sbjct: 221 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 280
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS R
Sbjct: 281 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVSKTLLREDLEGVLATLSPR 339
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +G+D + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 340 ERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 396
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 157 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 216
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + VLS+ R P++ EIAE + + + +
Sbjct: 217 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 276
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS R
Sbjct: 277 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVSKTLLREDLEGVLATLSPR 335
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +G+D + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 336 ERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 392
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 158 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 217
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + VLS+ R P++ EIAE + + + +
Sbjct: 218 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 277
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS R
Sbjct: 278 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVSKTLLREDLEGVLATLSPR 336
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +G+D + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 337 ERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 393
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 156/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 152 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 211
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 212 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 271
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L +L
Sbjct: 272 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKSLLREDLERVLDSLG 330
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 331 PRERDVLRLRYGLDNGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/245 (42%), Positives = 159/245 (64%), Gaps = 1/245 (0%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K L R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK
Sbjct: 150 KRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 209
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA
Sbjct: 210 FSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATR 269
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + + +R + + PISL+ + + D I ET P+ V K L++++L+
Sbjct: 270 MEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIESEGET-PDDQVAKSLLREDLES 328
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TLS RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N +
Sbjct: 329 VLGTLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSV 388
Query: 374 LKVYM 378
LK Y+
Sbjct: 389 LKEYI 393
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 156/239 (65%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 152 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 211
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 212 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 271
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L +L
Sbjct: 272 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKSLLREDLERVLDSLG 330
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 331 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 154/237 (64%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 158 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 217
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + VLS+ R P++ EIAE + + + +
Sbjct: 218 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPSEEEIAESMEMTIEKL 277
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I E PE+ V K L++++L+ +L TLS R
Sbjct: 278 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADIEN-PEQDVSKTLLREDLEGVLATLSPR 336
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +G+D + +EIG++ ++RERIRQI AL KL+ N LK Y+
Sbjct: 337 ERDVLRLRYGIDDGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYI 393
>gi|406926592|gb|EKD62776.1| hypothetical protein ACD_52C00059G0002 [uncultured bacterium]
Length = 359
Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 149/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
ER +++++I S LVVSIA Y G+GLSL DLIQEG+ GL+R ++++ RG+K STY
Sbjct: 119 ERRAKDKLIESNLRLVVSIAKKYIGRGLSLLDLIQEGNQGLIRAVEKYDWRRGFKFSTYA 178
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIAE + +
Sbjct: 179 TWWIRQAITRAIADQARTIRIPVHMVETINKLYRTSRKLMQELGREPTPEEIAEEMELTE 238
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR + ++ SL+ V D G + D IP P KQL+K L E+L TL
Sbjct: 239 ERVREIFKISQEVTSLETPVGDDGESVLGDFIPDESHLSPVDQASKQLLKDHLDEVLSTL 298
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+EREA +L+L FGLDG ++ +E+G++ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 299 TEREAKVLKLRFGLDGSKQMTLEEVGKVFGVTRERIRQIEAKALRKLKHPSRRKKLQDYL 358
>gi|385811725|ref|YP_005848121.1| DNA-directed RNA polymerase sigma subunit [Ignavibacterium album
JCM 16511]
gi|383803773|gb|AFH50853.1| DNA-directed RNA polymerase sigma subunit [Ignavibacterium album
JCM 16511]
Length = 286
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 161/242 (66%), Gaps = 2/242 (0%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ +++E++I++ VVS+A +Q +GLSL DLI EG+IGL++ A+RF+ RG+K +Y
Sbjct: 44 DEKAKEKLIKANLRFVVSVAKQFQNQGLSLGDLINEGNIGLIKAAERFDETRGFKFISYA 103
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WW++Q+I++AIA++SR +RLP + G + KI++A L + R PT E+A+ML++
Sbjct: 104 VWWVRQSIMQAIADQSRVVRLPLNRVGNLTKISKAYRDLEQEYERKPTTDELAQMLDMTS 163
Query: 259 STVRLAIERTRHPISLDGAVT--DRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQ 316
V A++ +S+D + D G ++ DI+P D+ +P++ + + +K+E+ +L
Sbjct: 164 EEVAYALQIAGRQVSMDAPLKEGDDGKNSLIDILPNEDQPLPDQKLMTESLKKEVANVLS 223
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKV 376
TLSEREA++++L+FG+DG + +EIG +L+RER+RQI+ AL L+Q+ LK
Sbjct: 224 TLSEREAEVIKLYFGIDGDHSATLEEIGERFNLTRERVRQIKEKALRNLRQSKKSARLKA 283
Query: 377 YM 378
Y+
Sbjct: 284 YL 285
>gi|345302023|ref|YP_004823925.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodothermus
marinus SG0.5JP17-172]
gi|345111256|gb|AEN72088.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodothermus
marinus SG0.5JP17-172]
Length = 279
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 161/245 (65%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+ ++ R+ VVS+A YQG+GLSL DLI EG+ GL++ A+RF+ RG+K
Sbjct: 34 RIKQGDEEALHKLTRANLRFVVSVAKKYQGQGLSLADLINEGNYGLIKAAQRFDETRGFK 93
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+QAI++A+A +SR +RLP + G ++KI + + L++ R P+ E+AE
Sbjct: 94 FISYAVWWIRQAILQALAEQSRVVRLPLNRIGTISKIRKVSARLAQEHERAPSAEELAEE 153
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
LNI V +R A++ T +S+D TD ++ D++P ++T P+ + ++ +K +++
Sbjct: 154 LNIDVEKIREALQHTGRALSMDAPFTDDDDNSLLDVLPNEEDTAPDEGLMEESLKIDIER 213
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TL REA+I+RL+FG+ + P++ +EIG+ L+RER+RQI+ AL KL+Q +
Sbjct: 214 ALSTLHPREAEIIRLYFGIGREHPLTLEEIGQRFGLTRERVRQIKEKALRKLRQKHRREE 273
Query: 374 LKVYM 378
L++++
Sbjct: 274 LQIHV 278
>gi|357458297|ref|XP_003599429.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355488477|gb|AES69680.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 185
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/159 (62%), Positives = 133/159 (83%)
Query: 221 GSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTD 280
G GMVAKIAEANNVL RRLRR PT +EIAE+LN++VSTV+L ER+R PISLD ++TD
Sbjct: 27 GEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRSITD 86
Query: 281 RGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSC 340
+ + +++IIPGP E +PE+MV++QLMKQ + +LL TL +RE +I+RL+FGL+G+TP+S
Sbjct: 87 QSNLILKEIIPGPVEMIPEKMVERQLMKQGVVKLLNTLDKREEEIVRLYFGLNGETPLSF 146
Query: 341 KEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYMV 379
+EIG+LL LSRERIRQI GIAL+KL+Q I+++LK Y+V
Sbjct: 147 EEIGKLLKLSRERIRQIHGIALSKLRQNTIVDSLKFYVV 185
>gi|268315720|ref|YP_003289439.1| RpoD subfamily RNA polymerase sigma-70 subunit [Rhodothermus
marinus DSM 4252]
gi|262333254|gb|ACY47051.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodothermus
marinus DSM 4252]
Length = 279
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 161/245 (65%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+ ++ R+ VVS+A YQG+GLSL DLI EG+ GL++ A+RF+ RG+K
Sbjct: 34 RIKQGDEEALHKLTRANLRFVVSVAKKYQGQGLSLADLINEGNYGLIKAAQRFDETRGFK 93
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+QAI++A+A +SR +RLP + G ++KI + + L++ R P+ E+AE
Sbjct: 94 FISYAVWWIRQAILQALAEQSRVVRLPLNRIGTISKIRKVSARLAQEHERAPSAEELAEE 153
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
LNI V +R A++ T +S+D TD ++ D++P ++T P+ + ++ +K +++
Sbjct: 154 LNIDVEKIREALQHTGRALSMDAPFTDDDDNSLLDVLPNEEDTSPDEGLMEESLKIDIER 213
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TL REA+I+RL+FG+ + P++ +EIG+ L+RER+RQI+ AL KL+Q +
Sbjct: 214 ALSTLHPREAEIIRLYFGIGREHPLTLEEIGQRFGLTRERVRQIKEKALRKLRQKHRREE 273
Query: 374 LKVYM 378
L++++
Sbjct: 274 LQIHV 278
>gi|397689183|ref|YP_006526437.1| RNA polymerase, sigma 70 subunit, rpod subfamily [Melioribacter
roseus P3M]
gi|395810675|gb|AFN73424.1| RNA polymerase, sigma 70 subunit, rpod subfamily [Melioribacter
roseus P3M]
Length = 284
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 162/245 (66%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++++ E+++++ VVS+A YQ +GLSL DLI EG++GL++ AKRF+ RG+K
Sbjct: 39 KIKKGDQKALEKLVKANLRFVVSVAKQYQNQGLSLGDLINEGNLGLIKAAKRFDETRGFK 98
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI +A + L + R P E+AE
Sbjct: 99 FISYAVWWIRQSILQALAEQSRIVRLPLNRVGALNKIGKAYSNLVQEFEREPNAEELAEQ 158
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
LN+ VS V AI+ IS+D + ++ D++P + P++ + + +K+E++
Sbjct: 159 LNMDVSEVADAIKNAGRHISMDAPFSQGEENSLLDVLPNDEVPSPDQTLMSESLKKEIER 218
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TL++REA++++L+FGL+G+ ++ +EIG +L+RER+RQI+ A+ +L+ T+ N
Sbjct: 219 ALSTLTDREAEVIKLYFGLNGEHSLTLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKN 278
Query: 374 LKVYM 378
L+ Y+
Sbjct: 279 LRAYL 283
>gi|406980685|gb|EKE02255.1| hypothetical protein ACD_20C00407G0008 [uncultured bacterium]
Length = 364
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/248 (40%), Positives = 155/248 (62%), Gaps = 3/248 (1%)
Query: 134 KILCKERESQ---ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
KI+ +E Q +++++ LVVSIA Y G+G+ DLIQEG++GL+R A++F+ ER
Sbjct: 115 KIVSGGKEGQIAKRKLVQANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIRAAEKFDHER 174
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
GYK STY WWI+QAI RAIA+++RTIR+P M + K+ + L++ L R PT+ EI
Sbjct: 175 GYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLKKITRKLAQDLSRKPTEEEI 234
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + I ++ +R I+ + P+SL+ + + D I + P V +L++++
Sbjct: 235 AEAMAITINKLREIIKVAQEPLSLETPIGKEEDSRLGDFIEDKEADAPVMTVAHELLRED 294
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L E+L +LS RE D+LRL FG+D + +E+G+L ++RERIRQI AL KL+ N
Sbjct: 295 LAEVLSSLSPRERDVLRLRFGMDDGRQRTLEEVGQLFGVTRERIRQIEAKALRKLRHPNR 354
Query: 371 LNNLKVYM 378
LK Y+
Sbjct: 355 SRRLKEYI 362
>gi|409351169|ref|ZP_11233997.1| RNA polymerase sigma factor [Lactobacillus equicursoris CIP 110162]
gi|407876928|emb|CCK86055.1| RNA polymerase sigma factor [Lactobacillus equicursoris CIP 110162]
Length = 373
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++E + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K
Sbjct: 128 RIEAGDEEAKEELTNANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFK 187
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EIA
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAE 247
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ V VR ++ + P+SL+ + + + D I D T PE+ +L+K +L E
Sbjct: 248 MDLPVKKVREILKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAANELLKDQLAE 307
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD P + +E+GR+ ++RERIRQI AL KL+ + N
Sbjct: 308 VLDTLTDREENVLRLRFGLDDDNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQ 367
Query: 374 LKVYM 378
L+ ++
Sbjct: 368 LRDFL 372
>gi|408411647|ref|ZP_11182785.1| RNA polymerase sigma factor [Lactobacillus sp. 66c]
gi|407874195|emb|CCK84591.1| RNA polymerase sigma factor [Lactobacillus sp. 66c]
Length = 389
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++E + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K
Sbjct: 144 RIEAGDEEAKEELTNANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFK 203
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EIA
Sbjct: 204 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPQPEEIAAE 263
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ V VR ++ + P+SL+ + + + D I D T PE+ +L+K +L E
Sbjct: 264 MDLPVKKVREILKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAANELLKDQLAE 323
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD P + +E+GR+ ++RERIRQI AL KL+ + N
Sbjct: 324 VLDTLTDREENVLRLRFGLDDDNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQ 383
Query: 374 LKVYM 378
L+ ++
Sbjct: 384 LRDFL 388
>gi|300812189|ref|ZP_07092631.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496825|gb|EFK31905.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 373
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 158/256 (61%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
+G+ + L K +I ++E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 118 SGDEEVQLAK-RIEAGDQEAKDELTSANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 176
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ + G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 177 VDKFDYQLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 236
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R P EIA +++ V VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 237 RDPEPEEIAAEMDLPVKKVREVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 296
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+++K +L E+L TL++RE ++LRL FGLD P + +E+GR+ ++RERIRQI AL
Sbjct: 297 ASEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKAL 356
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N L+ ++
Sbjct: 357 RKLRHPSRSNQLRDFL 372
>gi|313123888|ref|YP_004034147.1| RNA polymerase sigma factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280451|gb|ADQ61170.1| RNA polymerase sigma factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 373
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 158/256 (61%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
+G+ + L K +I ++E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 118 SGDEEVQLAK-RIEAGDQEAKDELTSANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 176
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ + G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 177 VDKFDYQLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 236
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R P EIA +++ V VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 237 RDPEPEEIAAEMDLPVKKVREVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 296
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+++K +L E+L TL++RE ++LRL FGLD P + +E+GR+ ++RERIRQI AL
Sbjct: 297 ASEMLKDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKAL 356
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N L+ ++
Sbjct: 357 RKLRHPSRSNQLRDFL 372
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 182/313 (58%), Gaps = 6/313 (1%)
Query: 70 SAAVRTAKDAVS--FANGAEEVCFDDGECESVLKMMRRRSRRKKRTKESDFLDK--ENGE 125
S ++R +D S +EEV G + ++K+ R R++ K++T + L + E
Sbjct: 280 SDSIRLLRDWSSSRLLTASEEVELSRG-IQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIG 338
Query: 126 LDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKR 185
+D +K ++ R+S ++II LV+S+A YQ +GLSL+DLIQ GS+GL+R A++
Sbjct: 339 VDQKTLKMRLEVG-RDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEK 397
Query: 186 FNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMP 245
F+ RG+K STY YWWI+Q+I +A+ +SRTIRLP + + +I A +L + +R P
Sbjct: 398 FDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDP 457
Query: 246 TDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQ 305
T E+AE+ I ++ +R +R P SLD V +I+ + E +V K+
Sbjct: 458 TKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKE 517
Query: 306 LMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
L K++L +L TL+ RE ++RL +GLD S E+G SLSRER+RQI A+ KL
Sbjct: 518 LFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKL 577
Query: 366 QQTNILNNLKVYM 378
+Q + +LK Y+
Sbjct: 578 RQNHRTQHLKHYL 590
>gi|385815881|ref|YP_005852272.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|325125918|gb|ADY85248.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 373
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 158/256 (61%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
+G+ + L K +I ++E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 118 SGDEEVQLAK-RIGAGDQEAKDELTNANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 176
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 177 VDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 236
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R P EIA +++ V VR A++ + P+SL+ + + + D I D T PE+
Sbjct: 237 RDPEPEEIAAEMDLPVKKVREALKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 296
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
++++ +L E+L TL++RE ++LRL FGLD P + +E+GR+ ++RERIRQI AL
Sbjct: 297 ASEMLRDQLAEVLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKAL 356
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N L+ ++
Sbjct: 357 RKLRHPSRSNKLRDFL 372
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 149/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ Y I CK++ +I+S LV+SIA YQG G++L+DL+QEG GL++GA++F+ +
Sbjct: 314 LNYGIFCKDK-----MIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTK 368
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ ++++++SRTIRLP M ++ EA L R P D E+
Sbjct: 369 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEV 428
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SL+ + + ++I PD E + KQ MK++
Sbjct: 429 AEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKD 488
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L+E L +L+ RE ++R FG+D + +EIG +L +SRERIRQI A KL+
Sbjct: 489 LEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKR 548
Query: 371 LNNLKVYMV 379
N+L+ Y+V
Sbjct: 549 TNHLQQYLV 557
>gi|160331013|ref|XP_001712214.1| rpoD [Hemiselmis andersenii]
gi|159765661|gb|ABW97889.1| rpoD [Hemiselmis andersenii]
Length = 485
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 153/234 (65%), Gaps = 2/234 (0%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
IL R ++ER++ + LVVSIA Y +G+SL+DLIQEGS+GL+R A++F+ E+G+K
Sbjct: 198 ILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKF 257
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WW+KQA+ RAIA+ SRTIRLP + ++ I + L+ + R PT+ EIAE +
Sbjct: 258 STYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKM 317
Query: 255 NIHVSTVRLAIERTRHPISLDGAV-TDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++ V +R ++ + +SL+ + D + D I D+ PE V+K +++ +L+
Sbjct: 318 DMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEA-DQESPEEHVEKSMLRDDLEN 376
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
++ +LS RE D++R+ +GLD + +EIG++ S++RER+RQI A+ KL+Q
Sbjct: 377 VINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 156/245 (63%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R +++F+P++GYK S
Sbjct: 145 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFS 204
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++L R PT++E+AE L
Sbjct: 205 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPTEAEMAEALE 264
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 265 ITVHQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVL 324
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 325 GDVLTPREKDVISLRYGLTSSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 384
Query: 375 KVYMV 379
K ++V
Sbjct: 385 KGWLV 389
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 182/313 (58%), Gaps = 6/313 (1%)
Query: 70 SAAVRTAKDAVS--FANGAEEVCFDDGECESVLKMMRRRSRRKKRTKESDFLDK--ENGE 125
S ++R +D S +EEV G + ++K+ R R++ K++T + L + E
Sbjct: 183 SDSIRLLRDWSSSRLLTASEEVELSRG-IQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIG 241
Query: 126 LDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKR 185
+D +K ++ R+S ++II LV+S+A YQ +GLSL+DLIQ GS+GL+R A++
Sbjct: 242 VDQKTLKMRLEVG-RDSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEK 300
Query: 186 FNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMP 245
F+ RG+K STY YWWI+Q+I +A+ +SRTIRLP + + +I A +L + +R P
Sbjct: 301 FDYSRGFKFSTYAYWWIRQSITKALTEQSRTIRLPVHIVESMTRIRTAWRLLYQEHKRDP 360
Query: 246 TDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQ 305
T E+AE+ I ++ +R +R P SLD V +I+ + E +V K+
Sbjct: 361 TKEEVAEVAGISMTRLRHVTRCSRVPTSLDRCVGKDMDEKFSEIVADTNSESTETIVSKE 420
Query: 306 LMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
L K++L +L TL+ RE ++RL +GLD S E+G SLSRER+RQI A+ KL
Sbjct: 421 LFKKDLDRVLDTLTAREKQVVRLRYGLDDGRMKSLHEVGENFSLSRERVRQIEMKAMRKL 480
Query: 366 QQTNILNNLKVYM 378
+Q + +LK Y+
Sbjct: 481 RQNHRTQHLKHYL 493
>gi|399950016|gb|AFP65672.1| RNA-polymerase sigma factor [Chroomonas mesostigmatica CCMP1168]
Length = 485
Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 153/234 (65%), Gaps = 2/234 (0%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
IL R ++ER++ + LVVSIA Y +G+SL+DLIQEGS+GL+R A++F+ E+G+K
Sbjct: 201 ILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKF 260
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WW+KQA+ RAIA+ SRTIRLP + ++ I + L+ + R PT+ EIAE +
Sbjct: 261 STYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKM 320
Query: 255 NIHVSTVRLAIERTRHPISLDGAV-TDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++ V +R ++ + +SL+ + D + D I D+ PE V+K +++ +L+
Sbjct: 321 DMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEA-DQESPEEHVEKSMLRDDLEN 379
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
++ +LS RE D++R+ +GLD + +EIG++ S++RER+RQI A+ KL+Q
Sbjct: 380 VINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 433
>gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Length = 490
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 153/234 (65%), Gaps = 2/234 (0%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
IL R ++ER++ + LVVSIA Y +G+SL+DLIQEGS+GL+R A++F+ E+G+K
Sbjct: 198 ILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKF 257
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WW+KQA+ RAIA+ SRTIRLP + ++ I + L+ + R PT+ EIAE +
Sbjct: 258 STYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKM 317
Query: 255 NIHVSTVRLAIERTRHPISLDGAV-TDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++ V +R ++ + +SL+ + D + D I D+ PE V+K +++ +L+
Sbjct: 318 DMSVEKLRSVLQSAQPTLSLERPLKNDDDASQLSDFIEA-DQESPEEHVEKSMLRDDLEN 376
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
++ +LS RE D++R+ +GLD + +EIG++ S++RER+RQI A+ KL+Q
Sbjct: 377 VINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 430
>gi|346225929|ref|ZP_08847071.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Anaerophaga thermohalophila DSM 12881]
Length = 289
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 155/235 (65%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ++ E++I + VVS+A YQ +GLSL DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 KIKQGDEKALEQLINANLRFVVSVAKQYQNQGLSLPDLINEGNLGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A ++R +RLP + G V K+ A ++L ++ +R PT EIAE+
Sbjct: 102 FISYAVWWIRQSILQALAEQARIVRLPLNKIGSVNKVNNAFSLLEQKYQREPTSEEIAEV 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ V+ A++ + +S+D + T+ D++ D P+ + +++E++
Sbjct: 162 LDMVPKDVKEALKVSNRHVSMDAPLKPDEENTLYDVLLSSDNASPDSQLLDDSLRKEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
L TLS READI+RL++GL G+ P S +EIG+L +L+RER+RQI+ A+ +L+ T
Sbjct: 222 SLSTLSPREADIIRLYYGLGGEPPYSLEEIGKLFNLTRERVRQIKEKAIKRLKHT 276
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 155/245 (63%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +GL DLIQEG++GL R A++F+P++GYK S
Sbjct: 140 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRAAEKFDPDKGYKFS 199
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++L+R P++ E+A+ L
Sbjct: 200 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLQRNPSEVELAQFLE 259
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I +R ++ R +SL+ V + D++ D PE+ + + +M+QE+ ++L
Sbjct: 260 ISAEHLRQLLQLRRKSLSLNHRVGKEEDTELVDLLEDEDSQSPEQQMSETMMRQEIWDVL 319
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ I L
Sbjct: 320 GDVLTPREKDVISLRYGLITSEPCTLEEVGSIFNLSRERVRQIQSKAMRKLRRPQIAKRL 379
Query: 375 KVYMV 379
K ++
Sbjct: 380 KGWLF 384
>gi|269925486|ref|YP_003322109.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269789146|gb|ACZ41287.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 338
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 152/233 (65%)
Query: 146 IIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQA 205
+I + LVVS+A + +GLSL DLI+EG+IGL+R +F+ +G+K STY WWI+QA
Sbjct: 105 LIEANLRLVVSVAKKHMNRGLSLLDLIEEGNIGLMRATDKFDYRKGFKFSTYATWWIRQA 164
Query: 206 IIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAI 265
+ RAIA+++RTIRLP + + + +A+ LS+ L R PT E+AE + ++ VRL +
Sbjct: 165 VTRAIADQARTIRLPVHITETMNHLYKASRKLSQELGREPTCEELAEYMGMNPEKVRLIM 224
Query: 266 ERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADI 325
+RHP+SL+G V G ++ IP P + +++K+EL ++L +L+E+E +
Sbjct: 225 RASRHPLSLEGPVGTDGDSSLGQFIPDSTTETPVDLAIGEVLKRELSKVLNSLTEKERKV 284
Query: 326 LRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ L +GL+G +P + +E+G L ++RER+RQI AL KL++ LN+L+ ++
Sbjct: 285 MVLRYGLEGSSPHTLEEVGHRLGVTRERVRQIEAKALEKLRKPGKLNHLRDFL 337
>gi|254444043|ref|ZP_05057519.1| RNA polymerase sigma factor, sigma-70 family [Verrucomicrobiae
bacterium DG1235]
gi|198258351|gb|EDY82659.1| RNA polymerase sigma factor, sigma-70 family [Verrucomicrobiae
bacterium DG1235]
Length = 377
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 157/240 (65%), Gaps = 11/240 (4%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I E+E+++ +I+S LVV IA Y+ GL + DLI EG+IGL++ +RF+P++G K
Sbjct: 105 RIQAGEKEARDLMIKSNLRLVVKIAHDYKDFGLPVLDLISEGNIGLVKAVERFDPDKGGK 164
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTY WWIKQ+I RA+AN+S+TIRLP + ++++ + +L+ L R PTD E+AEM
Sbjct: 165 LSTYAAWWIKQSIKRALANQSKTIRLPVHLVDKISRMRKMALMLTEELGREPTDQELAEM 224
Query: 254 LNI------HVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLM 307
L + H+ +V + P+ DG T+ G + D P P E + E+ +
Sbjct: 225 LEMPVNKVSHLKSVSVRPTSLNAPVGEDGNSTEFGEIVGDDNAPTPYENLHEKS-----L 279
Query: 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ +L E++ L +REA+I+RL FGL+G +P++ +E+G++ ++RER+RQ++ IAL+K+++
Sbjct: 280 RGDLHEMIDGLEDREAEIIRLRFGLNGDSPLTLEEVGQVFDITRERVRQLQNIALSKMRK 339
>gi|116514229|ref|YP_813135.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|116093544|gb|ABJ58697.1| RNA polymerase, sigma 70 subunit, RpoD [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 372
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G++ DLIQEG++GL++ +F+ G+K
Sbjct: 127 RIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGFK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + L R P EIA
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQFLQDLGRDPEPEEIAAE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ V VR A++ + P+SL+ + + + D I D T PE+ +++K +L E
Sbjct: 247 MDLPVKKVREALKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHAASEMLKDQLAE 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD P + +E+GR+ ++RERIRQI AL KL+ + N
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNK 366
Query: 374 LKVYM 378
L+ ++
Sbjct: 367 LRDFL 371
>gi|78779769|ref|YP_397881.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713268|gb|ABB50445.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 313
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/251 (41%), Positives = 160/251 (63%), Gaps = 6/251 (2%)
Query: 122 ENGELDYNLVKY-----KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGS 176
E+G+L+ + ++ +I+ R ++ER++++ LVVS+A YQGKGL L DL+QEGS
Sbjct: 53 EDGQLNEKIKEFTTQQKRIIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGS 112
Query: 177 IGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNV 236
+GL R ++F+P RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ +A I + +
Sbjct: 113 LGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLAAIRKVSRE 172
Query: 237 LSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDE 295
L+ +L MP+ EIAE ++I V + + + SLD V D G + D+I +
Sbjct: 173 LAHKLGAMPSRIEIAEAMDIDVEELDSVLRQALSTSSLDAPVNGDDGRSFLGDLIADSNT 232
Query: 296 TMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIR 355
P V++++ +++L + L LSE+E +L+L FGLDG + EIGRLL +SRER+R
Sbjct: 233 EEPLDKVEQKMHQEQLGKWLSHLSEQEQHVLKLRFGLDGNERHTLAEIGRLLEVSRERVR 292
Query: 356 QIRGIALTKLQ 366
Q+ AL KL+
Sbjct: 293 QVELKALRKLR 303
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 160/241 (66%), Gaps = 3/241 (1%)
Query: 129 NLVKYK-ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFN 187
++ K+K +L R+++ER+I + LVVSIA Y +G+SL+DL+QEGS+GL+R ++F+
Sbjct: 145 DVQKFKTVLYNSRKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQEGSLGLIRATEKFD 204
Query: 188 PERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTD 247
E+G+K STY WWIKQ++ RAIA+ SRTIRLP + ++ I + +L+ L R PT+
Sbjct: 205 SEKGFKFSTYATWWIKQSVSRAIADHSRTIRLPVHLYDTLSAIKKTTRILTIELGRSPTE 264
Query: 248 SEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRG-CMTMQDIIPGPDETMPERMVQKQL 306
EIA +++ V +R ++ + +SL+ + + G + D I D+ P+ V+K +
Sbjct: 265 EEIACKMDVTVDKLRSVLQSAQPTLSLEKPIKNDGDTAQLSDFIEA-DQESPDEHVEKSM 323
Query: 307 MKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
++ +L++++ +LS RE D++R+ +GLD + +EIG++ S++RER+RQI A+ KL+
Sbjct: 324 LRDDLRDVINSLSLRERDVIRMRYGLDDGKIRTLEEIGQIFSVTRERVRQIEAKAIRKLR 383
Query: 367 Q 367
Q
Sbjct: 384 Q 384
>gi|104774139|ref|YP_619119.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|103423220|emb|CAI98048.1| RNA polymerase sigma factor RpoD (Sigma-A) [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
Length = 372
Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 151/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G++ DLIQEG++GL++ +F+ G+K
Sbjct: 127 RIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGFK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EIA
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ V VR A++ + P+SL+ + + + D I D T PE+ ++++ +L E
Sbjct: 247 MDLPVKKVREALKVAQEPVSLETPIGEEDDSHLGDFIEDKDTTSPEQHAASEMLRDQLAE 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD P + +E+GR+ ++RERIRQI AL KL+ + N
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNK 366
Query: 374 LKVYM 378
L+ ++
Sbjct: 367 LRDFL 371
>gi|440755327|ref|ZP_20934529.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa TAIHU98]
gi|443663506|ref|ZP_21133143.1| RNA polymerase sigma factor, sigma-70 family protein [Microcystis
aeruginosa DIANCHI905]
gi|440175533|gb|ELP54902.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa TAIHU98]
gi|443331892|gb|ELS46531.1| RNA polymerase sigma factor, sigma-70 family protein [Microcystis
aeruginosa DIANCHI905]
Length = 217
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 142/216 (65%), Gaps = 1/216 (0%)
Query: 163 GKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGS 222
+GLS +DLIQEGS+GL+R A++F+ E+GYK STY WWI+QAI RAIA++SRTIRLP
Sbjct: 2 NRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVH 61
Query: 223 MAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRG 282
+ +++I + +LS+ +RR PT+ EIA + + + +R + + PISL+ +
Sbjct: 62 LYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEE 121
Query: 283 CMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKE 342
+ D I ET PE V K L++++L+ +L TLS RE D+LRL +GLD + +E
Sbjct: 122 DSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLSPRERDVLRLRYGLDDGRMKTLEE 180
Query: 343 IGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
IG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 181 IGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 216
>gi|443316869|ref|ZP_21046297.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783541|gb|ELR93453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 443
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 149/237 (62%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YWW
Sbjct: 204 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 263
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A +S+ R PT ++A L++ + V
Sbjct: 264 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQDQGRTPTLDDVARELDMTAAQV 323
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + D++ D PE ++ ++ ++++L++L+ L++R
Sbjct: 324 REVLLRVPRSVSLETKVGKERDTELGDLLE-TDSISPEELLMREALRRDLQQLMADLTDR 382
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +++RL FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 383 EREVIRLRFGLGDGNPFSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNRVRDYL 439
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/314 (34%), Positives = 187/314 (59%), Gaps = 10/314 (3%)
Query: 68 LASAAVRTAKDAVSFANGAEEVCFDDGECESVLKMMRRRSRRKKRTKESDFLDKENGELD 127
+ S ++ T + V A +++ + E V + + ++R+K+T E D +
Sbjct: 263 IGSVSLLTGEQEVELAMRIQDLVY----LEGVREQLEEEAKRRKQTSEVSNFD---WAIA 315
Query: 128 YNLVKYKI---LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
N+ + ++ L + ++ ++I++ LVVSIA Y K +S +DLIQEG +GL+RGA+
Sbjct: 316 ANVTERELKERLDAGKRAKNQMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAE 375
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F+ +RGYK STY +WWI+QA+ R+I+++SRTIRLP + +++++++ L + R
Sbjct: 376 KFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEIISRMSKVERQLVMKYGRD 435
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT EIAE++++ V + + + PISL +V D T+++ + P+ K
Sbjct: 436 PTTEEIAEVMDMTVEKINQIQKASLVPISLSQSVNDDDSRTVEETLVDDHAEHPDDATGK 495
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
L+K++L+ +L TLS RE D+LRL +G+D + +EIG + S++RERIRQI AL K
Sbjct: 496 VLLKEDLENVLNTLSPRERDVLRLRYGMDDGRVKTLEEIGNVFSVTRERIRQIEAKALRK 555
Query: 365 LQQTNILNNLKVYM 378
L+Q + L+ Y+
Sbjct: 556 LRQPSRNGILREYL 569
>gi|422843865|ref|ZP_16890575.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325686025|gb|EGD28083.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 373
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 157/256 (61%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
+G+ + L K +I ++E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 118 SGDEEVQLAK-RIEAGDQEAKDELTSANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 176
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ + G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 177 VGKFDYQLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 236
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R P EIA +++ V VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 237 RDPEPEEIAAEMDLPVKKVREVLKVAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 296
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+++K +L E+L TL++ E ++LRL FGLD P + +E+GR+ ++RERIRQI AL
Sbjct: 297 ASEMLKDQLAEVLDTLTDSEENVLRLRFGLDDGNPRTLEEVGRVFGVTRERIRQIEAKAL 356
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N L+ ++
Sbjct: 357 RKLRHPSRSNQLRDFL 372
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 149/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ Y + CKE+ +I+S LV+S+A YQG G+SL+DL+QEG GL+RGA++++ +
Sbjct: 328 LNYGVFCKEK-----MIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASK 382
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ ++++ +SRTIRLP M G K+ EA L R P D E+
Sbjct: 383 GFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEV 442
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SL+ V + + +++ P+ E + KQ MK++
Sbjct: 443 AEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKD 502
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L+++L +L+ RE +++ FG+D + +EIG ++ +SRERIRQI A KL+
Sbjct: 503 LEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKR 562
Query: 371 LNNLKVYMV 379
+L+ Y V
Sbjct: 563 AKHLQQYFV 571
>gi|227892546|ref|ZP_04010351.1| RNA polymerase sigma factor RpoD [Lactobacillus ultunensis DSM
16047]
gi|227865667|gb|EEJ73088.1| RNA polymerase sigma factor RpoD [Lactobacillus ultunensis DSM
16047]
Length = 370
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 153/245 (62%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K
Sbjct: 125 RIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFK 184
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EI
Sbjct: 185 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIKIQRQLLQDLGREPTPEEIGAE 244
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+N+ + VR ++ + P+SL+ + + + D I D T PE+ +++K++L++
Sbjct: 245 MNVPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQ 304
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N
Sbjct: 305 VLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 364
Query: 374 LKVYM 378
LK +M
Sbjct: 365 LKDFM 369
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 155/245 (63%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 133 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 192
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++L R P+++E+AE L
Sbjct: 193 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMAESLE 252
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 253 ISVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVL 312
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 313 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 372
Query: 375 KVYMV 379
K +++
Sbjct: 373 KGWLI 377
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 149/238 (62%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YW
Sbjct: 177 QAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYW 236
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA +SRTIRLP + + KI +A +S+ R T +IA L + +
Sbjct: 237 WIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQERGRTATIDDIAVELEMTAAQ 296
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + D++ +ET PE ++ ++ ++++L++LL L+
Sbjct: 297 VREVLLRVPRSVSLEIKVGKERDTELGDLLE-TEETSPEEVLMREALQRDLQQLLADLTN 355
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++R+ FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 356 RERDVIRMRFGLGDNQPYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 413
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 155/245 (63%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 133 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 192
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++L R P+++E+AE L
Sbjct: 193 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLSRNPSEAEMAEALE 252
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 253 ITVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVL 312
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 313 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 372
Query: 375 KVYMV 379
K +++
Sbjct: 373 KGWLI 377
>gi|406914403|gb|EKD53587.1| hypothetical protein ACD_61C00009G0004 [uncultured bacterium]
Length = 367
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K+ ++ +++ + +S LVVSIA Y G+G+S DLIQEG+ GL+R ++++ +G+K
Sbjct: 122 KVERGDKRAKDMLTKSNLRLVVSIAKKYMGRGMSFLDLIQEGNKGLIRAVEKYDWTKGFK 181
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PTD E+AE
Sbjct: 182 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRTQRKLMQDLGREPTDEEVAEE 241
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L VR ++ + SL+ + D + D IP + P +QLM + L+E
Sbjct: 242 LETTPEKVREILKIAQKTTSLETPIGDDEDSLLGDFIPDERQATPYEATSRQLMHENLEE 301
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L +L+ERE+ +LR+ FGLDG P++ +E+G++ ++RERIRQI AL KL+ +
Sbjct: 302 ALGSLTERESKVLRMRFGLDGSKPLTLEEVGKVFGVTRERIRQIESKALRKLRHPSRRRK 361
Query: 374 LKVYM 378
L+ Y+
Sbjct: 362 LQDYL 366
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 155/245 (63%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 134 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 193
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++L R PT+ E+AE L+
Sbjct: 194 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPTEGEMAEALD 253
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 254 ISVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVL 313
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 314 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 373
Query: 375 KVYMV 379
K +++
Sbjct: 374 KGWLI 378
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 154/245 (62%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 152 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 211
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++ R PT++E+AE L
Sbjct: 212 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEAEMAEFLE 271
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 272 MTVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVL 331
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 332 GDVLTSREKDVISLRYGLTTSEPCTLEEVGNIFNLSRERVRQIQSKAMRKLRRPHIAKRL 391
Query: 375 KVYMV 379
K +++
Sbjct: 392 KGWLI 396
>gi|347753174|ref|YP_004860739.1| RpoD subfamily RNA polymerase sigma-70 subunit [Bacillus coagulans
36D1]
gi|347585692|gb|AEP01959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Bacillus
coagulans 36D1]
Length = 377
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 151/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ ++GYK
Sbjct: 132 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLIKAVEKFDYKKGYK 191
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 192 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEEIAEE 251
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++I VR I+ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 252 MDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 311
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 312 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 371
Query: 374 LKVYM 378
LK ++
Sbjct: 372 LKDFL 376
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 154/245 (62%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 144 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 203
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++ R P+++EIAE L
Sbjct: 204 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEIAEFLE 263
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 264 MSVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVL 323
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 324 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 383
Query: 375 KVYMV 379
K +++
Sbjct: 384 KGWLI 388
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/256 (38%), Positives = 161/256 (62%), Gaps = 7/256 (2%)
Query: 125 ELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
+L++ L + K+ ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R +
Sbjct: 129 QLEHRLYQGKV------AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATE 182
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F+P++GYK STY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++L R
Sbjct: 183 KFDPDKGYKFSTYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARN 242
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT+ E+AE+L+I + +R + R +SL+ V + D++ D PE + +
Sbjct: 243 PTEEELAEVLDIPANQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNQSPEARMNE 302
Query: 305 QLMKQELKELL-QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363
+M+QE+ E+L L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+
Sbjct: 303 SMMRQEIWEVLGDVLTPREKDVISLRYGLTSSEPCTLEEVGNMFNLSRERVRQIQSKAMR 362
Query: 364 KLQQTNILNNLKVYMV 379
KL++ +I LK +++
Sbjct: 363 KLRRPHIAKRLKGWLI 378
>gi|123966683|ref|YP_001011764.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201049|gb|ABM72657.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 313
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++++ LVVS+A YQGKGL L DL+QEGS+GL R ++F+P RGYK STY +
Sbjct: 76 RRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKFDPTRGYKFSTYAF 135
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q++ RAIA +SRTIRLP ++ +A I + + L+ +L MP+ EIAE + I V
Sbjct: 136 WWIRQSMTRAIACQSRTIRLPVHLSERLATIRKVSRELAHKLGAMPSRIEIAEAMEIDVE 195
Query: 260 TVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ + + SLD V D G + D+I + P V++++ +++L + L L
Sbjct: 196 ELDSVLRQALSTSSLDAPVNGDDGRSFLGDLIADSNNEEPLDQVEQKMHQEQLGKWLTHL 255
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
SE+E +L+L FGLDG + EIGRLL +SRER+RQ+ AL KL+
Sbjct: 256 SEQEQHVLKLRFGLDGNERHTLAEIGRLLEVSRERVRQVELKALRKLR 303
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 158/247 (63%), Gaps = 5/247 (2%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K++ + + +++++I + LVV+IA YQ + + DLIQEGS+GL RG ++F+P +G+K
Sbjct: 84 KLIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFK 143
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA ++RTIRLP + + KI + LS++L R P SEIA
Sbjct: 144 FSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSPNQSEIANA 203
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELK 312
L++ S +R R PISLD V D + +++ DE + P++ + ++LM+Q+L
Sbjct: 204 LDLEPSQIREYFSIARQPISLDVKVGDNQDTELSELL--EDEGLSPDKYITQELMRQDLH 261
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+LL L+ ++ +++RL FGLD +S +IG+ + +SRER+RQ+ AL L++
Sbjct: 262 KLLDELTTQQQEVVRLRFGLDDGKELSLAKIGQRMGISRERVRQLEQQALAHLRKKR--G 319
Query: 373 NLKVYMV 379
++K Y+V
Sbjct: 320 SVKEYIV 326
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 155/245 (63%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 127 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 186
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++L R P+++E+AE L
Sbjct: 187 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMAEALE 246
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 247 ITVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVL 306
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 307 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 366
Query: 375 KVYMV 379
K +++
Sbjct: 367 KGWLI 371
>gi|162605994|ref|XP_001713512.1| RNA-polymerase sigma factor [Guillardia theta]
gi|13794432|gb|AAK39807.1|AF165818_15 RNA-polymerase sigma factor [Guillardia theta]
Length = 460
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 153/234 (65%), Gaps = 2/234 (0%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
IL R ++ER++ + LVVSIA Y +G+SL+DLIQEGS+GL+R A++F+ E+G+K
Sbjct: 181 ILHNARRAKERMVAANLRLVVSIAKRYVNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKF 240
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WW+KQA+ RAIA+ SRTIRLP + ++ I + L+ + R PT+ EIA+ +
Sbjct: 241 STYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRM 300
Query: 255 NIHVSTVRLAIERTRHPISLDGAV-TDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++ V +R ++ + +SL+ + D + D I D+ PE V+K +++ +L+
Sbjct: 301 DMSVEKLRNVLQSAQPTLSLERPLKNDDDTSQLSDFIEA-DQESPEEHVEKSMLRDDLEN 359
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
++ +LS RE D++R+ +GLD + +EIG++ S++RER+RQI A+ KL+Q
Sbjct: 360 VINSLSPRERDVVRMRYGLDDGRIKTLEEIGQIFSVTRERVRQIEAKAIRKLRQ 413
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 150/238 (63%), Gaps = 3/238 (1%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P++GY+ STY YWW
Sbjct: 125 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRFSTYAYWW 184
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A LS+ R PT +IA L + V V
Sbjct: 185 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASELEMTVPQV 244
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + D++ D+ PE + ++ + ++L++LL L+ R
Sbjct: 245 RELLVRVPRSVSLETKVGKDKDTELGDLLET-DDISPEETMMREALHRDLQQLLADLTSR 303
Query: 322 EADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D++R+ FGL DG+T S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 304 ERDVIRMRFGLGDGRT-YSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 360
>gi|325295045|ref|YP_004281559.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065493|gb|ADY73500.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Desulfurobacterium thermolithotrophum DSM 11699]
Length = 563
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 150/239 (62%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+E+++ ++RS LVVSIA Y +GL DLIQEG+IGL++ +F RGYK STY
Sbjct: 323 QEAKQILVRSNLRLVVSIAKKYINRGLHFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 382
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA+++RTIR+P M + K+ +A+ + R P EIAE L + S
Sbjct: 383 WWIRQAITRAIADQARTIRIPVHMIETINKVIKASRQMFLEKGREPRPEEIAERLRMPAS 442
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
VR I+ + P+SL+ + D T+ + I +PE V K+ +++++ +LL TLS
Sbjct: 443 KVRSIIQLAQEPVSLETPIGDDEDSTLGNFIEDSKSPIPEHEVIKKDLQEKVSQLLSTLS 502
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +L+L FGLDG + +++GR L ++RERIRQI AL KL+ + +L +++
Sbjct: 503 EREALVLKLRFGLDGYPEHTLEQVGRELKVTRERIRQIESKALRKLKNCGLDIDLSIFL 561
>gi|336114403|ref|YP_004569170.1| RpoD subfamily RNA polymerase sigma-70 subunit [Bacillus coagulans
2-6]
gi|335367833|gb|AEH53784.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Bacillus
coagulans 2-6]
Length = 377
Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 132 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLIKAVEKFDYRKGYK 191
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 192 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGREPTPEEIAEE 251
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++I VR I+ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 252 MDISPDKVREIIKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 311
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 312 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 371
Query: 374 LKVYM 378
LK ++
Sbjct: 372 LKDFL 376
>gi|33861845|ref|NP_893406.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33640213|emb|CAE19748.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 313
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++++ LVVS+A YQGKGL L DL+QEGS+GL R ++F+P RGYK STY +
Sbjct: 76 RRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKFDPTRGYKFSTYAF 135
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q++ RAIA +SRTIRLP ++ +A I + + L+ +L MP+ EIAE + I V
Sbjct: 136 WWIRQSMTRAIACQSRTIRLPVHLSERLATIRKISRELAHKLGAMPSRIEIAEAMEIDVE 195
Query: 260 TVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ + + SLD V D G + D+I + P V++++ +++L + L L
Sbjct: 196 ELDSVLRQALSTSSLDAPVNGDDGRSFLGDLIADSNNEEPLDQVEQKMHQEQLGKWLSHL 255
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
SE+E +L+L FGLDG + EIGRLL +SRER+RQ+ AL KL+
Sbjct: 256 SEQEQHVLKLRFGLDGNERHTLAEIGRLLEVSRERVRQVELKALRKLR 303
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 155/244 (63%), Gaps = 1/244 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L K R ++ ++IRS LVVSIA Y +G+ DLIQEG+IGL R A++F+P +GYK S
Sbjct: 129 LYKGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFS 188
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI R IAN +RTIRLP + + K+ +A L ++L+R P+++E+A+ L+
Sbjct: 189 TYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQKLQRNPSETELAQELD 248
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I + ++ R +SL+ V + D++ +PE + + +M+QEL ++L
Sbjct: 249 ISADQLHHLLQLRRQSLSLNHRVGKGEDTELVDLLEDDGLQLPEERMSEAMMRQELWDVL 308
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L++RE +++ L +GL + P + +E+G + +LSRER+RQI+ A+ KL++ + L
Sbjct: 309 GDVLTDREKEVIALRYGLSSEQPHTLEEVGGIFNLSRERVRQIQSKAMRKLRRPQVARKL 368
Query: 375 KVYM 378
K ++
Sbjct: 369 KSWL 372
>gi|390952817|ref|YP_006416575.1| sigma-70 family RNA polymerase sigma factor [Aequorivita
sublithincola DSM 14238]
gi|390418803|gb|AFL79560.1| RNA polymerase sigma factor, sigma-70 family [Aequorivita
sublithincola DSM 14238]
Length = 288
Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 154/235 (65%), Gaps = 1/235 (0%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
++ R+ V+S+A YQ +GLSL DLI EG++GL++ AKRF+ RG+K +Y WWI+Q
Sbjct: 53 KLSRANLRFVISVAKQYQNQGLSLPDLINEGNVGLVKAAKRFDETRGFKFISYAVWWIRQ 112
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLA 264
AI++AIA +SR +RLP + G + KI +A+ L ++ +R+PT SEIA+ L+ S V+ +
Sbjct: 113 AILQAIAEQSRVVRLPLNKIGDINKIKKASIHLEQKFQRIPTASEIAQELDFSESKVKSS 172
Query: 265 IERTRHPISLDGAVTD-RGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
++ + +S+D + + D++ + P++ + + ++ E+ L TL+ REA
Sbjct: 173 LKNSTRSLSMDAPFQEGENDNNLYDVLSSGESPNPDKNLMHESLRIEINRALDTLAPREA 232
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D+++L+FGL GQ P++ +EIG LSRER+RQIR A+ +L+QT+ + LK Y+
Sbjct: 233 DVVKLNFGLCGQPPMTLQEIGDTFDLSRERVRQIREKAIRRLRQTSKSHILKKYL 287
>gi|309792450|ref|ZP_07686915.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308225522|gb|EFO79285.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 311
Score = 184 bits (466), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 145/234 (61%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
++I S LVVSIA YQG GLSL DLIQEGS+GL+R +F+P RG K STY +WI+Q
Sbjct: 77 QLINSNLRLVVSIARRYQGHGLSLLDLIQEGSLGLMRAVDKFDPSRGLKFSTYATYWIRQ 136
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLA 264
++ RAIA+ RT+RLP + ++++A A L++RL R PT E+A+ L I V A
Sbjct: 137 SVGRAIADHGRTVRLPVHLGERLSRLARARQRLTQRLDRDPTPEEVADELGITTDQVTRA 196
Query: 265 IERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREAD 324
+ P SLD +D G + ++I P E P V L++ +L E + L++RE
Sbjct: 197 EQAALTPASLDETHSDDGTGALAEVISDPLEPTPLDHVAHGLLRDDLCEAMSHLTQRERS 256
Query: 325 ILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
IL L +GL+G+T ++ ++IG+ LSL+RER+RQ+ AL KL+ ++ L Y
Sbjct: 257 ILNLRYGLEGETALTLEQIGQRLSLTRERVRQLESEALRKLRDPHLGRRLHGYF 310
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 148/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ + CK++ +I+S LV+SIA YQG G++L+DL+QEG GL+RGA++F+ +
Sbjct: 331 LNHGTFCKDK-----MIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASK 385
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ ++++++SRTIRLP M ++ EA L + P + E+
Sbjct: 386 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGKQPNNEEV 445
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SLD + + ++I P+ E ++ KQ M+Q+
Sbjct: 446 AEATGLSMKRLTAVLMTPKAPRSLDQKIGFNMNLKPSEVIADPEAETAEDLLTKQFMRQD 505
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L+++L TLS RE ++R FGL+ + +EIG L+ +SRERIRQI A KLQ
Sbjct: 506 LEKVLDTLSSREKQVIRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFRKLQNKKK 565
Query: 371 LNNLKVYMV 379
NL+ YM
Sbjct: 566 TINLQQYMF 574
>gi|157413850|ref|YP_001484716.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388425|gb|ABV51130.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 313
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 156/251 (62%), Gaps = 6/251 (2%)
Query: 122 ENGELDYNLVKYKILCKE-----RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGS 176
E+G+L+ + ++ K R ++ER++++ LVVS+A YQGKGL L DL+QEGS
Sbjct: 53 EDGQLNEKIKEFTTQQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGS 112
Query: 177 IGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNV 236
+GL R ++F+P RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ +A I + +
Sbjct: 113 LGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLASIRKVSRD 172
Query: 237 LSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDE 295
L+ +L MP+ EIAE + I V + + + SLD V D G + D+I +
Sbjct: 173 LAHKLGAMPSRIEIAEAMEIDVEELDSVLRQALSTSSLDAPVNGDDGRSFLGDLIADSNN 232
Query: 296 TMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIR 355
P V++++ +++L + L LSE+E +L+L FGLD + EIGRLL +SRER+R
Sbjct: 233 EEPLDQVEQKMHQEQLGKWLSHLSEQEQHVLKLRFGLDANERHTLAEIGRLLEVSRERVR 292
Query: 356 QIRGIALTKLQ 366
Q+ AL KL+
Sbjct: 293 QVELKALRKLR 303
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 150/249 (60%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ Y ILCK++ +I+S LV+SIA YQG G++L+DL+QEG GL+RGA++F+ +
Sbjct: 323 LNYGILCKDK-----MIKSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASK 377
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ ++++++SRTIRLP M ++ EA L R P D E+
Sbjct: 378 GFKFSTYAHWWIKQAVRKSLSDRSRTIRLPFHMVDATYRVKEARKQLYSENGRHPDDKEV 437
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SLD + + + ++ P+ E ++ K+ MK++
Sbjct: 438 AEAAGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKD 497
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L ++L +LS RE ++R FG++ + +EIG L+ +SRER+RQI A KL+ N
Sbjct: 498 LAKVLGSLSPRENQVVRWRFGMEDGRMKTLQEIGELMGVSRERVRQIELSAFRKLKNKNR 557
Query: 371 LNNLKVYMV 379
L+ YMV
Sbjct: 558 TKQLRQYMV 566
>gi|385809530|ref|YP_005845926.1| RNA polymerase primary sigma factor [Ignavibacterium album JCM
16511]
gi|383801578|gb|AFH48658.1| RNA polymerase primary sigma factor [Ignavibacterium album JCM
16511]
Length = 284
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 147/235 (62%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
ER+I+S VVS+A YQ +GLSL DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 49 ERLIKSNLRFVVSVAKQYQNQGLSLGDLINEGNVGLMKAARRFDETRGFKFISYAVWWIR 108
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + +I +A + L + R P+ E+A L + V +
Sbjct: 109 QSILQALAEQSRIVRLPLNRVGTLNRIGKAYSHLEQEFEREPSPEELANELEMDVEEISD 168
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
++ T P+S+D ++ D++ D P+ + + +K E+K L L+ERE
Sbjct: 169 VMKMTGKPMSMDAPFNQNEENSLHDVLVNDDLPSPDDELMTESLKAEIKRALNILNEREK 228
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++L+L+FG+D P++ +EIG +L+RER+RQI+ A+ KL+ + NLK Y+
Sbjct: 229 EVLKLYFGIDCDQPLTLEEIGEKFNLTRERVRQIKEKAIRKLRHNSRSKNLKSYL 283
>gi|254527154|ref|ZP_05139206.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538578|gb|EEE41031.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 313
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 156/251 (62%), Gaps = 6/251 (2%)
Query: 122 ENGELDYNLVKYKILCKE-----RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGS 176
E+G+L+ + ++ K R ++ER++++ LVVS+A YQGKGL L DL+QEGS
Sbjct: 53 EDGQLNEKINEFTTQQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGS 112
Query: 177 IGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNV 236
+GL R ++F+P RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ +A I + +
Sbjct: 113 LGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLASIRKVSRD 172
Query: 237 LSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDE 295
L+ +L MP+ EIAE + I V + + + SLD V D G + D+I +
Sbjct: 173 LAHKLGAMPSRIEIAEAMEIDVEELDSVLRQALSTSSLDAPVNGDDGRSFLGDLIADSNN 232
Query: 296 TMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIR 355
P V++++ +++L + L LSE+E +L+L FGLD + EIGRLL +SRER+R
Sbjct: 233 EEPLDQVEQKMHQEQLGKWLSHLSEQEQHVLKLRFGLDANERHTLAEIGRLLEVSRERVR 292
Query: 356 QIRGIALTKLQ 366
Q+ AL KL+
Sbjct: 293 QVELKALRKLR 303
>gi|254423226|ref|ZP_05036944.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190715|gb|EDX85679.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 431
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 146/237 (61%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YWW
Sbjct: 192 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 251
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A +S+ R +IA+ L++ V+ +
Sbjct: 252 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQTQGRTAKAEDIAKELDMTVAQI 311
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + +SLD V + D++ D PE + ++ +K+EL +LL L+ R
Sbjct: 312 REVLLKVPRSVSLDTKVGKDRDTELGDLLETED-ISPEDRLMRESLKRELHQLLTDLTTR 370
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +++ L FGLD P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 371 EQEVITLRFGLDDGVPYSLAEIGRTLELSRERVRQIESKALQKLRQPKRRNRVRDYL 427
>gi|309791233|ref|ZP_07685765.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308226795|gb|EFO80491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 391
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 151/246 (61%), Gaps = 3/246 (1%)
Query: 133 YKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
Y + C ES++ +I++ LVVSIA Y GL++ DL+QEG+IGL+R ++F+ +G+
Sbjct: 148 YALGC---ESRQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGH 204
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI RAIA++SRTIRLP M ++++ ++ L + ++R PT EIAE
Sbjct: 205 KFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQSMQREPTPEEIAE 264
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
+ I VR +E + HP+SL+ V G M D I + P +++++++
Sbjct: 265 AMGISAGKVRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDDRISTPSEAAAAAMLREQIE 324
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
E+LQ L ERE I++L +GL + +E+G ++RERIRQI +AL KL+ ++
Sbjct: 325 EVLQKLPERERKIIQLRYGLKDGRYRTLEEVGVEFGITRERIRQIEAVALRKLRHPHLGK 384
Query: 373 NLKVYM 378
L+ Y+
Sbjct: 385 KLRGYL 390
>gi|259500591|ref|ZP_05743493.1| RNA polymerase sigma factor rpoD [Lactobacillus iners DSM 13335]
gi|302191282|ref|ZP_07267536.1| RNA polymerase sigma factor RpoD [Lactobacillus iners AB-1]
gi|309805231|ref|ZP_07699283.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LactinV
09V1-c]
gi|309807583|ref|ZP_07701535.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LactinV
01V1-a]
gi|312871770|ref|ZP_07731858.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LEAF 3008A-a]
gi|312875648|ref|ZP_07735649.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LEAF 2053A-b]
gi|325912054|ref|ZP_08174452.1| RNA polymerase sigma factor RpoD [Lactobacillus iners UPII 143-D]
gi|349611467|ref|ZP_08890702.1| RNA polymerase sigma factor rpoD [Lactobacillus sp. 7_1_47FAA]
gi|259167975|gb|EEW52470.1| RNA polymerase sigma factor rpoD [Lactobacillus iners DSM 13335]
gi|308165465|gb|EFO67696.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LactinV
09V1-c]
gi|308169189|gb|EFO71255.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LactinV
01V1-a]
gi|311088902|gb|EFQ47345.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LEAF 2053A-b]
gi|311092712|gb|EFQ51068.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LEAF 3008A-a]
gi|325476004|gb|EGC79172.1| RNA polymerase sigma factor RpoD [Lactobacillus iners UPII 143-D]
gi|348608560|gb|EGY58540.1| RNA polymerase sigma factor rpoD [Lactobacillus sp. 7_1_47FAA]
Length = 382
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 156/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N + + +L K +I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 127 NADQEIDLAK-RIENNDDEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 185
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 186 VDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 245
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EI +++ VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 246 REPTPEEIGAEMDMSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 305
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+E+L TL++RE ++LRL FGL+ + +E+GR+ ++RERIRQI AL
Sbjct: 306 SYELLKEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRERIRQIEAKAL 365
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N LK ++
Sbjct: 366 RKLRHPSRSNQLKDFL 381
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 153/245 (62%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 155 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 214
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++ R PT+ E+AE L
Sbjct: 215 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFARNPTEVEMAEFLE 274
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 275 MTVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVL 334
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 335 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 394
Query: 375 KVYMV 379
K +++
Sbjct: 395 KGWLI 399
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 154/245 (62%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 146 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 205
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++ R P+++E+AE L
Sbjct: 206 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMAEALE 265
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 266 ISVPQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVL 325
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 326 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 385
Query: 375 KVYMV 379
K +++
Sbjct: 386 KGWLI 390
>gi|309803186|ref|ZP_07697283.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LactinV
11V1-d]
gi|309806578|ref|ZP_07700575.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LactinV
03V1-b]
gi|312872984|ref|ZP_07733044.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LEAF
2062A-h1]
gi|315653573|ref|ZP_07906493.1| RNA polymerase sigma factor rpoD [Lactobacillus iners ATCC 55195]
gi|325912624|ref|ZP_08175007.1| RNA polymerase sigma factor RpoD [Lactobacillus iners UPII 60-B]
gi|329920166|ref|ZP_08276997.1| RNA polymerase sigma factor RpoD [Lactobacillus iners SPIN 1401G]
gi|308164694|gb|EFO66944.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LactinV
11V1-d]
gi|308166998|gb|EFO69180.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LactinV
03V1-b]
gi|311091506|gb|EFQ49890.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LEAF
2062A-h1]
gi|315488935|gb|EFU78577.1| RNA polymerase sigma factor rpoD [Lactobacillus iners ATCC 55195]
gi|325478045|gb|EGC81174.1| RNA polymerase sigma factor RpoD [Lactobacillus iners UPII 60-B]
gi|328936620|gb|EGG33064.1| RNA polymerase sigma factor RpoD [Lactobacillus iners SPIN 1401G]
Length = 382
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 156/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N + + +L K +I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 127 NADQEIDLAK-RIENNDDEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 185
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 186 VDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 245
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EI +++ VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 246 REPTPEEIGAEMDMSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 305
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+E+L TL++RE ++LRL FGL+ + +E+GR+ ++RERIRQI AL
Sbjct: 306 SYELLKEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRERIRQIEAKAL 365
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N LK ++
Sbjct: 366 RKLRHPSRSNQLKDFL 381
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 154/244 (63%), Gaps = 1/244 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L K R ++ ++IRS LVVSIA Y +G+ DLIQEG+IGL R A++F+P +GYK S
Sbjct: 121 LYKGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFS 180
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI R IAN +RTIRLP + + K+ +A L + L+R PT++E+A+ L+
Sbjct: 181 TYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRTLKQTLQRNPTEAELAQELD 240
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I + ++ R +SL+ V + D++ +PE + + +M+QEL ++L
Sbjct: 241 ITADQLHQLLQLRRQSLSLNHRVGKGEDTELVDLLEDDGLQLPEERMSEAMMRQELWDVL 300
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L++RE +++ L +GL + P + +E+G + +LSRER+RQI+ A+ KL++ + L
Sbjct: 301 GDVLTDREKEVIALRYGLSSEQPHTLEEVGGMFNLSRERVRQIQSKAMRKLRRPQVARRL 360
Query: 375 KVYM 378
K ++
Sbjct: 361 KSWL 364
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 145/230 (63%), Gaps = 1/230 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 98 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 157
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R PT +E+AE + +
Sbjct: 158 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPED 217
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + +++ G D +P V++ +K +L+ LL L
Sbjct: 218 DVKDLMCRARQPVSLEMKVGDGDDTELLELLSG-DGDLPSDQVEEDCLKGDLRSLLGQLP 276
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369
+ +LR+ +G+DG+ P+S IGR+L +SR+R+R + L L++ +
Sbjct: 277 HLQEQVLRMRYGMDGEDPMSLTGIGRILGMSRDRVRNLERDGLAGLRRVS 326
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 152/244 (62%), Gaps = 1/244 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG+IGL R ++F+P +GYK S
Sbjct: 124 LYRGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFS 183
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI R IAN +RTIRLP + + K+ +A L ++L+R P + E+A LN
Sbjct: 184 TYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQQLQRNPNEQELANELN 243
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ +S + +E R +SL+ V + D++ + +PE + + +M+QE+ +L
Sbjct: 244 VSLSQLHQLLELRRQSLSLNHRVGKAEDTELVDLLEDSELQLPEERMSEAMMRQEIFTVL 303
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ERE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ + L
Sbjct: 304 SDVLTEREKDVISLRYGLATNQPYTLEEVGGMFNLSRERVRQIQSKAMRKLRRPQVARRL 363
Query: 375 KVYM 378
K ++
Sbjct: 364 KGWL 367
>gi|319789700|ref|YP_004151333.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermovibrio
ammonificans HB-1]
gi|317114202|gb|ADU96692.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermovibrio
ammonificans HB-1]
Length = 563
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/248 (39%), Positives = 155/248 (62%), Gaps = 3/248 (1%)
Query: 134 KILCKERESQER---IIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
KI +++SQE ++RS LVVSIA Y +GL DLIQEG+IGL++ +F R
Sbjct: 314 KIYFYKKDSQEAKQILVRSNLRLVVSIAKKYINRGLHFLDLIQEGNIGLMKAVDKFEYRR 373
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
GYK STY WWI+QAI RAIA+++RTIR+P M + K+ + + + + + R P EI
Sbjct: 374 GYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKVIKISRQMFQEMGREPKPEEI 433
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE L + S VR ++ + P+SL+ + D T+ + I +PE+ V K+ ++++
Sbjct: 434 AERLKMPASKVRSILQLAQEPVSLETPIGDDEDSTLGNFIEDTKSPIPEQEVIKKDLQEK 493
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
+ +LL LSEREA +L+L FGLDG + +++G+ L ++RERIRQI AL KL+ + +
Sbjct: 494 VSQLLSQLSEREALVLKLRFGLDGYPEHTLEQVGKELKVTRERIRQIESKALRKLRNSGL 553
Query: 371 LNNLKVYM 378
+L +++
Sbjct: 554 NIDLSIFL 561
>gi|309810147|ref|ZP_07703992.1| RNA polymerase sigma factor RpoD [Lactobacillus iners SPIN
2503V10-D]
gi|308169419|gb|EFO71467.1| RNA polymerase sigma factor RpoD [Lactobacillus iners SPIN
2503V10-D]
Length = 382
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 156/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N + + +L K +I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 127 NADQEIDLAK-RIENNDDEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 185
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 186 VDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 245
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EI +++ VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 246 REPTPEEIGAEMDMSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 305
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+E+L TL++RE ++LRL FGL+ + +E+GR+ ++RERIRQI AL
Sbjct: 306 SYELLKEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRERIRQIEAKAL 365
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N LK ++
Sbjct: 366 RKLRHPSRSNQLKDFL 381
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 154/245 (62%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 134 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 193
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++ R P+++E+AE L
Sbjct: 194 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKFSRNPSEAEMAEALE 253
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 254 ISVPQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVL 313
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 314 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 373
Query: 375 KVYMV 379
K +++
Sbjct: 374 KGWLI 378
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 150/239 (62%), Gaps = 3/239 (1%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 95 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 154
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R PT +E+A+ + +
Sbjct: 155 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTITELAQYVELPED 214
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + +++ G D +P V++ MK +L+ LL L
Sbjct: 215 DVKDLMCRARQPVSLEMKVGDGDDTELLELLAG-DADLPSDQVEEDCMKGDLRSLLGQLP 273
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ +LR+ +G+DG+ P+S IGR+L +SR+R+R + L L++ I + ++ Y+
Sbjct: 274 HLQEQVLRMRYGMDGEDPMSLTGIGRILGMSRDRVRNLERDGLAGLRR--ISDQVEAYV 330
>gi|116629751|ref|YP_814923.1| RNA polymerase sigma factor RpoD [Lactobacillus gasseri ATCC 33323]
gi|238853400|ref|ZP_04643779.1| RNA polymerase sigma factor RpoD [Lactobacillus gasseri 202-4]
gi|282851794|ref|ZP_06261157.1| RNA polymerase sigma factor RpoD [Lactobacillus gasseri 224-1]
gi|300361838|ref|ZP_07058015.1| RNA polymerase sigma factor rpoD [Lactobacillus gasseri JV-V03]
gi|311110607|ref|ZP_07712004.1| RNA polymerase sigma-43 factor [Lactobacillus gasseri MV-22]
gi|420147067|ref|ZP_14654343.1| RNA polymerase sigma factor [Lactobacillus gasseri CECT 5714]
gi|116095333|gb|ABJ60485.1| RNA polymerase, sigma 70 subunit, RpoD [Lactobacillus gasseri ATCC
33323]
gi|238833972|gb|EEQ26230.1| RNA polymerase sigma factor RpoD [Lactobacillus gasseri 202-4]
gi|282557036|gb|EFB62635.1| RNA polymerase sigma factor RpoD [Lactobacillus gasseri 224-1]
gi|300354457|gb|EFJ70328.1| RNA polymerase sigma factor rpoD [Lactobacillus gasseri JV-V03]
gi|311065761|gb|EFQ46101.1| RNA polymerase sigma-43 factor [Lactobacillus gasseri MV-22]
gi|398401068|gb|EJN54570.1| RNA polymerase sigma factor [Lactobacillus gasseri CECT 5714]
Length = 373
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 155/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N + + L K +I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 118 NADQEIALAK-RIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 176
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 177 VDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 236
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EI +++ VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 237 REPTPEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 296
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+E+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL
Sbjct: 297 SYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 356
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N LK ++
Sbjct: 357 RKLRHPSRSNQLKDFL 372
>gi|123969020|ref|YP_001009878.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199130|gb|ABM70771.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 313
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 156/251 (62%), Gaps = 6/251 (2%)
Query: 122 ENGELDYNLVKYKILCKE-----RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGS 176
E+G+L+ + ++ K R ++ER++++ LVVS+A YQGKGL L DL+QEGS
Sbjct: 53 EDGQLNEKVNEFTTQQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGS 112
Query: 177 IGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNV 236
+GL R ++F+P RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ +A I + +
Sbjct: 113 LGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLASIRKVSRD 172
Query: 237 LSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDE 295
L+ +L MP+ EIAE + I V + + + SLD V D G + D+I +
Sbjct: 173 LAHKLGAMPSRIEIAEAMEIDVEELDSVLRQALSTSSLDAPVNGDDGRSFLGDLIADSNN 232
Query: 296 TMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIR 355
P V++++ +++L + L LSE+E +L+L FGLD + EIGRLL +SRER+R
Sbjct: 233 EEPLDQVEQKMHQEQLGKWLSHLSEQEQHVLKLRFGLDANERHTLAEIGRLLEVSRERVR 292
Query: 356 QIRGIALTKLQ 366
Q+ AL KL+
Sbjct: 293 QVELKALRKLR 303
>gi|315038507|ref|YP_004032075.1| RNA polymerase sigma factor RpoD [Lactobacillus amylovorus GRL
1112]
gi|325956923|ref|YP_004292335.1| RNA polymerase sigma factor RpoD [Lactobacillus acidophilus 30SC]
gi|385817765|ref|YP_005854155.1| RNA polymerase sigma factor RpoD [Lactobacillus amylovorus GRL1118]
gi|312276640|gb|ADQ59280.1| RNA polymerase sigma factor RpoD [Lactobacillus amylovorus GRL
1112]
gi|325333488|gb|ADZ07396.1| RNA polymerase sigma factor RpoD [Lactobacillus acidophilus 30SC]
gi|327183703|gb|AEA32150.1| RNA polymerase sigma factor RpoD [Lactobacillus amylovorus GRL1118]
Length = 370
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 152/245 (62%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K
Sbjct: 125 RIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFK 184
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 185 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 244
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+N+ + VR ++ + P+SL+ + + + D I D T PE+ +++K++L++
Sbjct: 245 MNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQ 304
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N
Sbjct: 305 VLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 364
Query: 374 LKVYM 378
L+ +M
Sbjct: 365 LRDFM 369
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 148/233 (63%), Gaps = 3/233 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+IL R +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 91 RILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 150
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA +RTIRLP + + KI + L+++L R P+ EIA
Sbjct: 151 FSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGEIAAA 210
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELK 312
L +H S +R + RHP+SLD V D +Q+++ DET P+ + +L++Q+L
Sbjct: 211 LELHPSQIREYLLMARHPVSLDLRVGDNQDTELQELL--EDETASPDNYITSELLRQDLD 268
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
L+ L+ ++ D++ L FGL+ T +S ++G L+LSRER+RQ+ AL L
Sbjct: 269 TLISELTPQQRDVIILRFGLEDGTEMSLAKVGERLNLSRERVRQLEHQALAHL 321
>gi|227878689|ref|ZP_03996603.1| RNA polymerase sigma factor RpoD [Lactobacillus crispatus JV-V01]
gi|256843283|ref|ZP_05548771.1| RNA polymerase sigma factor RpoD [Lactobacillus crispatus
125-2-CHN]
gi|256850360|ref|ZP_05555788.1| RNA polymerase sigma factor RpoD [Lactobacillus crispatus MV-1A-US]
gi|262046492|ref|ZP_06019454.1| RNA polymerase sigma factor RpoD [Lactobacillus crispatus MV-3A-US]
gi|293380134|ref|ZP_06626221.1| RNA polymerase sigma factor RpoD [Lactobacillus crispatus 214-1]
gi|295693058|ref|YP_003601668.1| RNA polymerase sigma factor [Lactobacillus crispatus ST1]
gi|312978174|ref|ZP_07789918.1| RNA polymerase sigma-43 factor [Lactobacillus crispatus CTV-05]
gi|423318618|ref|ZP_17296495.1| RNA polymerase sigma factor rpoD [Lactobacillus crispatus FB049-03]
gi|423321749|ref|ZP_17299620.1| RNA polymerase sigma factor rpoD [Lactobacillus crispatus FB077-07]
gi|227861704|gb|EEJ69309.1| RNA polymerase sigma factor RpoD [Lactobacillus crispatus JV-V01]
gi|256614703|gb|EEU19904.1| RNA polymerase sigma factor RpoD [Lactobacillus crispatus
125-2-CHN]
gi|256712757|gb|EEU27750.1| RNA polymerase sigma factor RpoD [Lactobacillus crispatus MV-1A-US]
gi|260573363|gb|EEX29921.1| RNA polymerase sigma factor RpoD [Lactobacillus crispatus MV-3A-US]
gi|290923304|gb|EFE00220.1| RNA polymerase sigma factor RpoD [Lactobacillus crispatus 214-1]
gi|295031164|emb|CBL50643.1| RNA polymerase sigma factor [Lactobacillus crispatus ST1]
gi|310894892|gb|EFQ43962.1| RNA polymerase sigma-43 factor [Lactobacillus crispatus CTV-05]
gi|405591687|gb|EKB65161.1| RNA polymerase sigma factor rpoD [Lactobacillus crispatus FB077-07]
gi|405593898|gb|EKB67333.1| RNA polymerase sigma factor rpoD [Lactobacillus crispatus FB049-03]
Length = 370
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 152/245 (62%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K
Sbjct: 125 RIESGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFK 184
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 185 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 244
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+N+ + VR ++ + P+SL+ + + + D I D T PE+ +++K++L++
Sbjct: 245 MNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQ 304
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N
Sbjct: 305 VLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 364
Query: 374 LKVYM 378
L+ +M
Sbjct: 365 LRDFM 369
>gi|225851205|ref|YP_002731439.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
gi|225645895|gb|ACO04081.1| RNA polymerase sigma factor RpoD (Sigma-70) [Persephonella marina
EX-H1]
Length = 577
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++++I++S LVVSIA Y +GL DLIQEG+IGL++ +F+ ++GYK STY W
Sbjct: 338 ETKQKIVQSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFDYKKGYKFSTYATW 397
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ + + L R PT EIA+ + +
Sbjct: 398 WIRQAITRAIADQARTIRIPVHMIETINKLVRVARSMVQELGREPTPEEIAKKVGMPPEK 457
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + ++ PISL+ + D + D I PE+ V +Q ++Q+L+E+L TLSE
Sbjct: 458 VRKILRTSQEPISLETPIGDDDESHLGDFIEDKTVMSPEQHVLRQALRQQLEEVLSTLSE 517
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
RE +LR FGL+ T + +++G+ ++RERIRQI AL KL+
Sbjct: 518 REEQVLRYRFGLEDDTEYTLEQVGKKFGVTRERIRQIEAKALRKLRH 564
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY YWW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R PT +E+A+ +++ V
Sbjct: 157 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAQFVDLPEDEV 216
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ + R R P+SL+ V D + +++ G +E +P V++ +K +L+ LL L
Sbjct: 217 KDLMCRARQPVSLEMKVGDGDDTELLELLSGDNE-LPSDQVEEDCLKGDLRSLLGQLPHL 275
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369
+ +LR+ FG+DG+ P+S IGR+L +SR+R+R + L L++ +
Sbjct: 276 QEQVLRMRFGMDGEDPMSLTGIGRILGMSRDRVRNLERDGLAGLRRVS 323
>gi|227904114|ref|ZP_04021919.1| RNA polymerase sigma factor RpoD [Lactobacillus acidophilus ATCC
4796]
gi|227868133|gb|EEJ75554.1| RNA polymerase sigma factor RpoD [Lactobacillus acidophilus ATCC
4796]
Length = 370
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 152/245 (62%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K
Sbjct: 125 RIESGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFK 184
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 185 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 244
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+N+ + VR ++ + P+SL+ + + + D I D T PE+ +++K++L++
Sbjct: 245 MNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQ 304
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N
Sbjct: 305 VLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 364
Query: 374 LKVYM 378
L+ +M
Sbjct: 365 LRDFM 369
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 148/233 (63%), Gaps = 3/233 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+IL R +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 91 RILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 150
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA +RTIRLP + + KI + L+++L R P+ EIA
Sbjct: 151 FSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELTQQLGRSPSPGEIATA 210
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELK 312
L +H S +R + RHP+SLD V D +Q+++ DET P+ + +L++Q+L
Sbjct: 211 LELHPSQIREYLLMARHPVSLDLRVGDNQDTELQELL--EDETASPDNYITSELLRQDLD 268
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
L+ L+ ++ D++ L FGL+ T +S ++G L+LSRER+RQ+ AL L
Sbjct: 269 TLISELTPQQRDVIILRFGLEDGTEMSLAKVGERLNLSRERVRQLEHQALAHL 321
>gi|42519241|ref|NP_965171.1| RNA polymerase sigma factor RpoD [Lactobacillus johnsonii NCC 533]
gi|385825805|ref|YP_005862147.1| RNA polymerase sigma factor RpoD [Lactobacillus johnsonii DPC 6026]
gi|417837453|ref|ZP_12483691.1| RNA polymerase sigma factor RpoD [Lactobacillus johnsonii pf01]
gi|41583529|gb|AAS09137.1| RNA polymerase sigma factor RpoD [Lactobacillus johnsonii NCC 533]
gi|329667249|gb|AEB93197.1| RNA polymerase sigma factor RpoD [Lactobacillus johnsonii DPC 6026]
gi|338760996|gb|EGP12265.1| RNA polymerase sigma factor RpoD [Lactobacillus johnsonii pf01]
Length = 372
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 155/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N + + L K +I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 117 NADQEIALAK-RIESGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 175
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 176 VDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 235
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EI +++ VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 236 REPTPEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 295
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+E+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL
Sbjct: 296 SYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 355
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N LK ++
Sbjct: 356 RKLRHPSRSNQLKDFL 371
>gi|269925873|ref|YP_003322496.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269789533|gb|ACZ41674.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 326
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/253 (38%), Positives = 156/253 (61%), Gaps = 15/253 (5%)
Query: 114 KESDFLDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQ 173
+E+ DKE GE+ ++ R+I LVVSIA Y G+GL L DLI+
Sbjct: 78 REAALRDKERGEM---------------ARRRMIECNLRLVVSIARRYAGRGLPLSDLIE 122
Query: 174 EGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEA 233
EG++GL+R A +F+ RGY+ STY WWI+QA+ RA+A++SR +RLP + ++ I +
Sbjct: 123 EGNLGLMRAADKFDYRRGYRFSTYATWWIRQAVTRALASQSRVVRLPVHVTELMHNITKV 182
Query: 234 NNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGP 293
++ LS+ L R PT EIA LNI VR ++ +++P+SL+ + G T+++II P
Sbjct: 183 SHRLSQELGREPTSEEIAAELNITPERVREVVKASQYPMSLEQPYGEDGDGTVEEIIEDP 242
Query: 294 DETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRER 353
+ P V + ++++++ LL L++RE +L L +GL G + +E+G++L ++RER
Sbjct: 243 NIESPADQVSRDILREQILALLDDLTDRERQVLDLRYGLTGNHSYTLEEVGKVLGVTRER 302
Query: 354 IRQIRGIALTKLQ 366
IRQI AL+KL+
Sbjct: 303 IRQIEKEALSKLR 315
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 146/228 (64%), Gaps = 1/228 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY YWW
Sbjct: 97 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWW 156
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R PT +E+A+ +++ V
Sbjct: 157 IRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAQFVDLPEDEV 216
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ + R R P+SL+ V D + +++ G +E +P V++ +K +L+ LL L
Sbjct: 217 KDLMCRARQPVSLEMKVGDGDDTELLELLSGDNE-LPSDQVEEDCLKGDLRSLLGQLPHL 275
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369
+ +LR+ FG+DG+ P+S IGR+L +SR+R+R + L L++ +
Sbjct: 276 QEQVLRMRFGMDGEDPMSLTGIGRILGMSRDRVRNLERDGLAGLRRVS 323
>gi|58337478|ref|YP_194063.1| RNA polymerase sigma factor RpoD [Lactobacillus acidophilus NCFM]
gi|58254795|gb|AAV43032.1| RNA polymerase sigma factor [Lactobacillus acidophilus NCFM]
Length = 356
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 152/245 (62%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K
Sbjct: 111 RIESGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFK 170
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 171 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 230
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+N+ + VR ++ + P+SL+ + + + D I D T PE+ +++K++L++
Sbjct: 231 MNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQ 290
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N
Sbjct: 291 VLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 350
Query: 374 LKVYM 378
L+ +M
Sbjct: 351 LRDFM 355
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 154/245 (62%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 145 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 204
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++L R P ++E+AE L
Sbjct: 205 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLCRNPNEAEMAEALE 264
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 265 ISVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVL 324
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 325 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 384
Query: 375 KVYMV 379
K +++
Sbjct: 385 KGWLI 389
>gi|126696812|ref|YP_001091698.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126543855|gb|ABO18097.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 313
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/251 (40%), Positives = 155/251 (61%), Gaps = 6/251 (2%)
Query: 122 ENGELDYNLVKYKILCKE-----RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGS 176
E+G+L+ ++ K R ++ER++++ LVVS+A YQGKGL L DL+QEGS
Sbjct: 53 EDGQLNEKTNEFTTQQKRTIKIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGS 112
Query: 177 IGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNV 236
+GL R ++F+P RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ +A I + +
Sbjct: 113 LGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLASIRKVSRD 172
Query: 237 LSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDE 295
L+ +L MP+ EIAE + I V + + + SLD V D G + D+I +
Sbjct: 173 LAHKLGAMPSRIEIAEAMEIDVEELDSVLRQALSTSSLDAPVNGDDGRSFLGDLIADSNN 232
Query: 296 TMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIR 355
P V++++ +++L + L LSE+E +L+L FGLD + EIGRLL +SRER+R
Sbjct: 233 EEPLDQVEQKMHQEQLGKWLSHLSEQEQHVLKLRFGLDANERHTLAEIGRLLEVSRERVR 292
Query: 356 QIRGIALTKLQ 366
Q+ AL KL+
Sbjct: 293 QVELKALRKLR 303
>gi|156744261|ref|YP_001434390.1| RpoD family RNA polymerase sigma factor [Roseiflexus castenholzii
DSM 13941]
gi|156235589|gb|ABU60372.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus
castenholzii DSM 13941]
Length = 399
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 150/238 (63%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++ +I++ LVVSIA Y GL++ DL+QEG+IGL+R ++F+ +G+K STY W
Sbjct: 161 EARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATW 220
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA++SRTIRLP M ++++ A++ L + ++R PT EIA+ + I +
Sbjct: 221 WIRQAITRAIADQSRTIRLPVHMGEAISQVKRASHKLQQMMQREPTPEEIADAMGISSTK 280
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR +E + HP+SL+ V G M D I + P +++++L+E+LQ L E
Sbjct: 281 VRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASMLREQLEEVLQKLPE 340
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE I++L +GL + +E+G ++RERIRQI +AL KL+ ++ L+ Y+
Sbjct: 341 RERKIIQLRYGLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKKLRGYL 398
>gi|268319377|ref|YP_003293033.1| DNA-directed RNA polymerase sigma factor RpoD (Sigma-70)
[Lactobacillus johnsonii FI9785]
gi|262397752|emb|CAX66766.1| DNA-directed RNA polymerase sigma factor RpoD (Sigma-70)
[Lactobacillus johnsonii FI9785]
Length = 372
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 155/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N + + L K +I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 117 NADQEIALAK-RIESGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 175
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 176 VDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 235
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EI +++ VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 236 REPTPEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 295
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+E+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL
Sbjct: 296 SYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 355
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N LK ++
Sbjct: 356 RKLRHPSRSNQLKDFL 371
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 145/230 (63%), Gaps = 1/230 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 98 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 157
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R PT +E+AE + +
Sbjct: 158 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPED 217
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + +++ G D +P V++ +K +L+ LL L
Sbjct: 218 DVKDLMCRARQPVSLEMKVGDGDDTELLELLSG-DGDLPSDQVEEDCLKGDLRSLLGQLP 276
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369
+ +LR+ +G+DG+ P+S IGR+L +SR+R+R + L L++ +
Sbjct: 277 HLQEQVLRMRYGMDGEDPMSLTGIGRILGMSRDRVRNLERDGLAGLRRVS 326
>gi|227890104|ref|ZP_04007909.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
johnsonii ATCC 33200]
gi|227849548|gb|EEJ59634.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
johnsonii ATCC 33200]
Length = 372
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 155/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N + + L K +I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 117 NADQEIALAK-RIESGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 175
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 176 VDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 235
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EI +++ VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 236 REPTPEEIGAEMDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 295
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+E+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL
Sbjct: 296 SYELLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 355
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N LK ++
Sbjct: 356 RKLRHPSRSNQLKDFL 371
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 149/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ + +CK++ +I+S LV+SIA YQG G++L+DL+QEG GL+RGA++F+ +
Sbjct: 325 INHGTICKDK-----MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 379
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ ++++++SRTIRLP M ++ EA L R P D E+
Sbjct: 380 GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEV 439
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SLD + + ++I P+ E ++ KQ MKQ+
Sbjct: 440 AEAAGLSMKRLSAVLLTPKAPRSLDQKIGMNMDLKPSEVIADPEAETAEELLMKQFMKQD 499
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L+++L TL+ RE ++R FGL+ + +EIG ++ +SRERIRQI A KL+
Sbjct: 500 LEKVLNTLNPRETQVVRWRFGLEDGRMKTLQEIGEIMGVSRERIRQIESSAFRKLKNKKR 559
Query: 371 LNNLKVYMV 379
LK Y++
Sbjct: 560 TKQLKQYLL 568
>gi|397691763|ref|YP_006529017.1| DNA-directed RNA polymerase sigma subunit RpoD [Melioribacter
roseus P3M]
gi|395813255|gb|AFN76004.1| DNA-directed RNA polymerase sigma subunit RpoD [Melioribacter
roseus P3M]
Length = 286
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 157/242 (64%), Gaps = 2/242 (0%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++++ +++ ++ VVS+A YQ +GL L DLI EG++GL++ RF+ RG+K +Y
Sbjct: 44 DKQALDKLTKANLRFVVSVAKQYQNQGLPLGDLINEGNLGLIKAGLRFDETRGFKFISYA 103
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+Q+I++AIA +SR +RLP + G + K+ +A + L + R P+ EIAE L++ V
Sbjct: 104 VWWIRQSIMQAIAEQSRMVRLPLNRVGALNKMGKALSQLEQEYERKPSAEEIAEQLDMDV 163
Query: 259 STVRLAIERTRHPISLDG--AVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQ 316
V A++ IS+D A +D ++ D++P D+ P+ + K+ +K E++ L
Sbjct: 164 QDVNYAMQIAGRHISMDAPFAHSDDSNNSLLDVMPNEDQPSPDHTLLKESLKTEIERSLS 223
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKV 376
TL+EREA+++RL+FGL + ++ +EIG L+L+RER+RQI+ AL +L+ ++ NLK
Sbjct: 224 TLTEREAEVIRLYFGLGKEHSLTLEEIGEKLNLTRERVRQIKEKALIRLRHSSRSKNLKA 283
Query: 377 YM 378
Y+
Sbjct: 284 YL 285
>gi|406993881|gb|EKE12962.1| hypothetical protein ACD_13C00110G0010 [uncultured bacterium]
Length = 359
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++ +++++ S LVVSIA Y G+GLSL DLIQEG+ GL+R ++++ +GYK STY
Sbjct: 119 DKRAKDKLTESNLRLVVSIAKKYIGRGLSLLDLIQEGNQGLIRAVEKYDWRKGYKFSTYA 178
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + KI + L + L R PT EI E L +
Sbjct: 179 TWWIRQAITRAIADQARTIRIPVHMVETINKIYRTSRRLMQELGREPTPEEIGEELEMDG 238
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ +R + + SL+ V + + D IP P KQL+K L+E+L TL
Sbjct: 239 NRIREIFKIAQETTSLEAPVGEDQESFLGDFIPDETTLSPVDQASKQLLKDHLEEVLGTL 298
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
SEREA +L+L FGL+G ++ +E+G++ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 299 SEREAKVLKLRFGLEGSKAMTLEEVGKVFGVTRERIRQIEAKALRKLKHPSRRKKLQDYL 358
>gi|116074383|ref|ZP_01471645.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069688|gb|EAU75440.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 104 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 163
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R PT +E+AE + +
Sbjct: 164 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEE 223
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + +++ G D +P V+ + +K +L++LL+ L
Sbjct: 224 EVKDLMCRARQPVSLEMKVGDGDDTELLELLAG-DGELPSEQVEGECLKGDLRDLLEQLP 282
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
E + +LR+ +G++G+ P+S IGR++ +SR+R+R + L L++
Sbjct: 283 ELQRKVLRMRYGMNGEDPMSLTGIGRIIGISRDRVRNLERDGLAGLRR 330
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 148/232 (63%), Gaps = 1/232 (0%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
++L + R++++++I + LVV+IA YQ + L DLIQEGS+GL RG ++F+P RGYK
Sbjct: 83 RVLRQGRQAKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPSRGYK 142
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA + R+IRLP + + KI + LS++L R T +EIA
Sbjct: 143 FSTYAYWWIRQAITRAIAQQGRSIRLPIHITEKLNKIKKTQRELSQQLGRSATSAEIAVA 202
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L + + +R + +R PISLD V DR + +++ PE+ +Q ++QEL+
Sbjct: 203 LELEPAQIRDYLTLSRQPISLDAKVGDRQDTELSELLEDGG-ISPEKYTVQQSLRQELQS 261
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
L L+ ++ +++ L FGL+G T +S ++G +L+LSRER+RQ+ AL+
Sbjct: 262 TLDELTRQQREVINLRFGLEGGTELSLAKVGEILNLSRERVRQLEHQALSHF 313
>gi|428315381|ref|YP_007113263.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
gi|428239061|gb|AFZ04847.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria
nigro-viridis PCC 7112]
Length = 421
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++ +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P RGY+ STY YW
Sbjct: 181 EAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYW 240
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA +SRTIRLP + + KI +A +S+ R T +IA L++
Sbjct: 241 WIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIAVELDMTAPQ 300
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + + D++ D PE M+ ++ + ++L++LL L+
Sbjct: 301 VREVLLRVPRSVSLETKVGNEKDTELGDLLE-TDSISPEEMLMREALHRDLQQLLADLTS 359
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 360 RERDVILMRFGLGDGHPYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 417
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 147/237 (62%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YWW
Sbjct: 178 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 237
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A +S+ R T +IA L + V
Sbjct: 238 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIALELEMTKEQV 297
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + D++ +ET PE ++ ++ ++++L++LL L+ R
Sbjct: 298 REVLLRVPRSVSLEIKVGKEKDTELGDLLE-TEETSPEEVLMREALQRDLQQLLADLTSR 356
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D++R+ FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 357 ERDVIRMRFGLGDGHPYSLAEIGRALELSRERVRQIEAKALQKLRQPKRRNRVRDYL 413
>gi|334117906|ref|ZP_08491997.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333461015|gb|EGK89623.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 421
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/238 (41%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++ +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P RGY+ STY YW
Sbjct: 181 EAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYW 240
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA +SRTIRLP + + KI +A +S+ R T +IA L++
Sbjct: 241 WIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATIEDIAVELDMTAPQ 300
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + + D++ D PE M+ ++ + ++L++LL L+
Sbjct: 301 VREVLLRVPRSVSLETKVGNEKDTELGDLLE-TDSISPEEMLMREALHRDLQQLLADLTS 359
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 360 RERDVILMRFGLGDGHPYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 417
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 148/230 (64%), Gaps = 1/230 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + +++++++I + LVVS+A YQ + L L DLIQEG++GL RG ++F+P RGYK S
Sbjct: 86 LHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFS 145
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIA ++RTIRLP + + KI +A LS++L R T +EIAE L
Sbjct: 146 TYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKAQRELSQKLGRSATPAEIAEALE 205
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ S +R + R PISLD V D ++D++ D PE+ + ++ ++ +LL
Sbjct: 206 LEPSQIRDYLTIARQPISLDLRVGDNQDTELRDLLED-DGQSPEQFTTTEALRDDVNQLL 264
Query: 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
+ L+ ++ D+L L FGL+ +S ++G+ LSLSRER+RQ+ AL L
Sbjct: 265 KELTPQQRDVLMLRFGLNNGKELSLAKVGQQLSLSRERVRQLERQALDYL 314
>gi|312874241|ref|ZP_07734275.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LEAF 2052A-d]
gi|311090311|gb|EFQ48721.1| RNA polymerase sigma factor RpoD [Lactobacillus iners LEAF 2052A-d]
Length = 382
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 156/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N + + +L K +I + ++++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 127 NADQEIDLAK-RIENNDDDAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 185
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 186 VDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 245
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EI +++ VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 246 REPTPEEIGAEMDMSTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 305
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+E+L TL++RE ++LRL FGL+ + +E+GR+ ++RERIRQI AL
Sbjct: 306 SYELLKEQLEEVLDTLTDREENVLRLRFGLNDGRTRTLEEVGRVFGVTRERIRQIEAKAL 365
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N LK ++
Sbjct: 366 RKLRHPSRSNQLKDFL 381
>gi|403514879|ref|YP_006655699.1| RNA polymerase sigma factor RpoD [Lactobacillus helveticus R0052]
gi|403080317|gb|AFR21895.1| RNA polymerase sigma factor RpoD [Lactobacillus helveticus R0052]
Length = 370
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 150/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K STY
Sbjct: 130 DEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFKFSTYA 189
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI +N+
Sbjct: 190 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMNMPT 249
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ VR ++ + P+SL+ + + + D I D T PE+ +++K++L+++L+TL
Sbjct: 250 NKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETL 309
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N L+ +M
Sbjct: 310 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 148/230 (64%), Gaps = 1/230 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + +++++++I + LVVS+A YQ + L L DLIQEG++GL RG ++F+P RGYK S
Sbjct: 86 LHQGQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFS 145
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIA ++RTIRLP + + KI +A LS++L R T +EIAE L
Sbjct: 146 TYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKAQRELSQKLGRSATPAEIAEALE 205
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ S +R + R PISLD V D ++D++ D PE+ + ++ ++ +LL
Sbjct: 206 LEPSQIRDYLTIARQPISLDLRVGDNQDTELRDLLED-DGQSPEQFTTTEALRDDVNQLL 264
Query: 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
+ L+ ++ D+L L FGL+ +S ++G+ LSLSRER+RQ+ AL L
Sbjct: 265 KELTPQQRDVLMLRFGLNNGKELSLAKVGQQLSLSRERVRQLERQALDYL 314
>gi|238854653|ref|ZP_04644983.1| RNA polymerase sigma factor RpoD [Lactobacillus jensenii 269-3]
gi|260664404|ref|ZP_05865256.1| RNA polymerase sigma factor RpoS [Lactobacillus jensenii SJ-7A-US]
gi|238832443|gb|EEQ24750.1| RNA polymerase sigma factor RpoD [Lactobacillus jensenii 269-3]
gi|260561469|gb|EEX27441.1| RNA polymerase sigma factor RpoS [Lactobacillus jensenii SJ-7A-US]
Length = 364
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 155/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N + + L K +I + E+++ + + LVVSIA Y G+G+ DLIQEG++GL++
Sbjct: 109 NADEEITLAK-RIQDGDEEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKA 167
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+FN + G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 168 VDKFNYKLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 227
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EI +++ VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 228 REPTPEEIGAEMDMGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 287
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+++K++L+E+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL
Sbjct: 288 SYEMLKEQLEEVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 347
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N LK ++
Sbjct: 348 RKLRHPSRSNQLKDFL 363
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 145/228 (63%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 118 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 177
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R P+ +E+A + +
Sbjct: 178 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPSVTELAAFVELPED 237
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + D++ G D +P V+ + +K +L++LL L
Sbjct: 238 EVKELMCRARQPVSLEMKVGDGDDTELLDLLAG-DGELPSEQVEGECLKGDLRDLLGQLP 296
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
E + +LR+ +G+DG+ P+S IGR++ +SR+R+R + L L++
Sbjct: 297 ELQERVLRMRYGMDGEDPMSLTGIGRVIGISRDRVRNLERDGLAGLRR 344
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 145/228 (63%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 118 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 177
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R P+ +E+A + +
Sbjct: 178 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPED 237
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + D++ G D +P V+ + +K +L++LL L
Sbjct: 238 EVKELMCRARQPVSLEMKVGDGDDTELLDLLAG-DGELPSEQVEGECLKGDLRDLLGQLP 296
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
E + +LR+ +G+DG+ P+S IGR++ +SR+R+R + L L++
Sbjct: 297 ELQERVLRMRYGMDGEEPMSLTGIGRVIGISRDRVRNLERDGLAGLRR 344
>gi|385813669|ref|YP_005850062.1| RNA polymerase sigma factor [Lactobacillus helveticus H10]
gi|323466388|gb|ADX70075.1| RNA polymerase sigma factor [Lactobacillus helveticus H10]
Length = 370
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 150/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K STY
Sbjct: 130 DEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFKFSTYA 189
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI +N+
Sbjct: 190 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMNMPT 249
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ VR ++ + P+SL+ + + + D I D T PE+ +++K++L+++L+TL
Sbjct: 250 NKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETL 309
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N L+ +M
Sbjct: 310 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 154/245 (62%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 145 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 204
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++L R P+++E+A L
Sbjct: 205 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLARNPSEAEMATALE 264
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I + +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 265 ISIQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNENMMRQEIWEVL 324
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 325 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 384
Query: 375 KVYMV 379
K +++
Sbjct: 385 KGWLI 389
>gi|254430889|ref|ZP_05044592.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
gi|197625342|gb|EDY37901.1| possible type II alternative RNA polymerase sigma factor [Cyanobium
sp. PCC 7001]
Length = 327
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 149/245 (60%), Gaps = 1/245 (0%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ L + R ++ER++++ LVV++A YQ +GL L DLIQEG++GL R +R++P RG++
Sbjct: 78 QALHRGRRAKERMLQANLRLVVAVAKKYQRRGLDLLDLIQEGTLGLERAVERYDPRRGFR 137
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+Q I RA+A++SRTIRLP + + +I L+R R PT +E+A
Sbjct: 138 FSTYAYWWIRQGITRALASQSRTIRLPVHVTETLNRIRTCQGELTREHGRQPTLAELARA 197
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + + +R + P+SL+G V + D++ D PE+ + +Q + +L+
Sbjct: 198 VGLDEARLRSTLAHIPRPVSLEGRVGANADTPLVDLLED-DHATPEQTLTRQQLHADLEA 256
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL LS REA ++R FGLD TP + EIG L LSRER+RQI AL KL+Q
Sbjct: 257 LLDELSAREATVIRQRFGLDDDTPRTLAEIGEQLQLSRERVRQIESRALLKLRQPQNRCR 316
Query: 374 LKVYM 378
++ Y+
Sbjct: 317 VRDYL 321
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 145/238 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++++ +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P RGY+ STY YW
Sbjct: 221 QAKDHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYW 280
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA +SRTIRLP + + KI +A +S+ R + +IA L +
Sbjct: 281 WIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTASIEDIAAELGMTAPQ 340
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + + D++ D PE ++ ++ + ++L++LL L+
Sbjct: 341 VREVLLRVPRSVSLETKVGNEKDTELGDLLDDADSVSPEELLMREALHRDLQQLLADLTS 400
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 401 RERDVILMRFGLGDGHPYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 458
>gi|254416308|ref|ZP_05030062.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176990|gb|EDX72000.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 416
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 148/238 (62%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YW
Sbjct: 176 QAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYW 235
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA +SRTIRLP + + KI +A +S+ R T +IA+ L +
Sbjct: 236 WIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEQGRTATIEDIAKELEMDAPQ 295
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + D++ +ET PE ++ ++ ++++L++LL L+
Sbjct: 296 VREVLMRVPRSVSLEIKVGKEKDTELGDLLE-TEETSPEDVLMREALQRDLQQLLADLTS 354
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 355 RERDVICMRFGLGDGHPYSLAEIGRALELSRERVRQIEAKALQKLRQPKRRNRVRDYL 412
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 147/237 (62%), Gaps = 6/237 (2%)
Query: 129 NLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
NLVK R S++++I + LVV+IA YQ + L DLIQEG++GL RG ++F+P
Sbjct: 91 NLVKIG-----RRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDP 145
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
RGYK STY YWWI+QAI RAIA ++RTIRLP + + KI + L++ L R P+ S
Sbjct: 146 MRGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELTQNLGRSPSPS 205
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMK 308
EI E L + + +R + R P+SLD V D +QD++ D + PE + ++L++
Sbjct: 206 EIGEALELEPAQIREYLLMARQPVSLDLRVGDNQDTELQDLLEDADAS-PENYITQELLR 264
Query: 309 QELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
++L+ LL L+ ++ D++ L FGL +S ++G LSLSRER+RQ+ AL L
Sbjct: 265 EDLESLLAELTTQQRDVIILRFGLKDGRELSLAKVGEKLSLSRERVRQLEHQALAHL 321
>gi|418010946|ref|ZP_12650717.1| RNA polymerase sigma factor [Lactobacillus casei Lc-10]
gi|410553525|gb|EKQ27528.1| RNA polymerase sigma factor [Lactobacillus casei Lc-10]
Length = 422
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 151/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 177 KIEQGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 236
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 237 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 296
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T PE +L+K++L+
Sbjct: 297 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLES 356
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ ++
Sbjct: 357 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHSSRSKQ 416
Query: 374 LKVYM 378
LK ++
Sbjct: 417 LKDFL 421
>gi|256851182|ref|ZP_05556571.1| RNA polymerase sigma factor RpoS [Lactobacillus jensenii 27-2-CHN]
gi|260660606|ref|ZP_05861521.1| RNA polymerase sigma factor RpoS [Lactobacillus jensenii 115-3-CHN]
gi|297206047|ref|ZP_06923442.1| RNA polymerase sigma factor rpoD [Lactobacillus jensenii JV-V16]
gi|256616244|gb|EEU21432.1| RNA polymerase sigma factor RpoS [Lactobacillus jensenii 27-2-CHN]
gi|260548328|gb|EEX24303.1| RNA polymerase sigma factor RpoS [Lactobacillus jensenii 115-3-CHN]
gi|297149173|gb|EFH29471.1| RNA polymerase sigma factor rpoD [Lactobacillus jensenii JV-V16]
Length = 364
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G+ DLIQEG++GL++ +FN + G+K
Sbjct: 119 RIQDGDEEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFNYKLGFK 178
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 179 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 238
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T PE+ +++K++L+E
Sbjct: 239 MDMGTDKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEE 298
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N
Sbjct: 299 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQ 358
Query: 374 LKVYM 378
LK ++
Sbjct: 359 LKDFL 363
>gi|86610159|ref|YP_478921.1| RNA polymerase sigma factor SigC [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558701|gb|ABD03658.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 366
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 150/240 (62%), Gaps = 3/240 (1%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+ ++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P++GY+ STY Y
Sbjct: 125 KRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPKKGYRFSTYAY 184
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA +SRTIRLP + + KI +A LS+ R PT +IA L +
Sbjct: 185 WWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTPTIEDIASELEMTPP 244
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
VR + R +SL+ V + D++ D+ PE + ++ + ++L++LL L+
Sbjct: 245 QVRELLVRVPRSVSLETKVGKDKDTELGDLLET-DDISPEETMMREALHRDLQQLLSDLT 303
Query: 320 EREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++R+ FGL DG+T S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 304 SRERDVIRMRFGLGDGRT-YSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 362
>gi|335429392|ref|ZP_08556290.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
gi|334889402|gb|EGM27687.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
Length = 398
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 145/237 (61%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
S+ R++ + LVVSIA + G+G+ DLIQEG++GL++ +F+ RGYK STY WW
Sbjct: 160 SKMRLVEANLRLVVSIAKRHVGRGMLFLDLIQEGNMGLMKAVDKFDYRRGYKFSTYATWW 219
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L++ L R P EIA+ ++I V
Sbjct: 220 IRQAITRAIADQARTIRIPVHMVETINKLVREQRQLTQELGRDPLPEEIAKKMDITPDKV 279
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ ++ PISL+ V + + D IP + P +L+KQEL E+L+TL++R
Sbjct: 280 REILKISQDPISLESPVGEEDDSNLGDFIPDSETISPAEFASNELLKQELNEVLETLTDR 339
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGL+ + +E+G+ ++RERIRQI AL KL+ + L+ +M
Sbjct: 340 EERVLRLRFGLNDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSKKLRDFM 396
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 145/228 (63%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 98 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 157
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R P+ +E+A + +
Sbjct: 158 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEE 217
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + +++ G D +P V+ + +K +L++LL L
Sbjct: 218 EVKDLMCRARQPVSLEMKVGDGDDTELLELLAG-DGELPSEQVEGECLKGDLRDLLSQLP 276
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
E + +LR+ +G+DG+ P+S IGR++ +SR+R+R + L L++
Sbjct: 277 ELQGKVLRMRYGMDGEEPMSLTGIGRIIGISRDRVRNLERDGLAGLRR 324
>gi|371777651|ref|ZP_09483973.1| RpoD subfamily RNA polymerase sigma-70 subunit [Anaerophaga sp.
HS1]
Length = 289
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 144/225 (64%), Gaps = 3/225 (1%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
VVS+A YQ +GLSL DLI EG++GL++ A+RF+ RG+K +Y WWI+Q+I++A+A
Sbjct: 61 FVVSVAKQYQNQGLSLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAE 120
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++R +RLP + G V K+ A L + +R PT EIAE+L++ V+ A++ + I
Sbjct: 121 QARIVRLPLNKIGSVNKVNNAFAQLEQEYQREPTSEEIAELLDMAPKDVKEALKASHKHI 180
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
S+D + T+ D++ P+ + +++E+ L TLS READI+RL++GL
Sbjct: 181 SMDAPLKPDDDNTLYDVLLSDSSGQPDSHLVDDSLRKEIDRSLSTLSSREADIIRLYYGL 240
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT---NILNNL 374
G+ P S +EIG+L +L+RER+RQI+ A+ +L+ T IL NL
Sbjct: 241 HGEPPYSLEEIGKLFNLTRERVRQIKEKAIKRLKNTYRSRILRNL 285
>gi|81428494|ref|YP_395494.1| RNA polymerase sigma factor RpoD [Lactobacillus sakei subsp. sakei
23K]
gi|78610136|emb|CAI55185.1| DNA-directed RNA polymerase sigma factor, sigma A (Primary sigma
factor) [Lactobacillus sakei subsp. sakei 23K]
Length = 369
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 149/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 129 DQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDHRKGFKFSTYA 188
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI ++++
Sbjct: 189 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMNT 248
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T PE +L+K++L+ +L TL
Sbjct: 249 DKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTL 308
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 309 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 149/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ Y ILCK++ +I+S LV+SIA YQG G++L+DL+QEG GL+RG ++F+ +
Sbjct: 320 LNYAILCKDK-----MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVEKFDASK 374
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWI+QA+ R+++++SRTIRLP M ++ EA R P D E+
Sbjct: 375 GFKFSTYAHWWIRQAVRRSLSDQSRTIRLPFHMVDATYRVKEARKQFYSENGRHPDDKEV 434
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SLD + + + ++ P+ E ++ K+ MK++
Sbjct: 435 AEATGLSMKRLSAVLLTPKAPRSLDQKMGFNMDLKLSEVTADPEAETAEDLLMKEFMKKD 494
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L+ +L++LS RE ++R FG++ + +EIG L+ +SRERIRQI A KL+ N
Sbjct: 495 LERVLESLSPRENQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIELSAFRKLKNKNR 554
Query: 371 LNNLKVYMV 379
L+ Y+V
Sbjct: 555 TKQLRQYLV 563
>gi|293375429|ref|ZP_06621710.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325844412|ref|ZP_08168139.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
gi|292645982|gb|EFF64011.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325489086|gb|EGC91470.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
Length = 464
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
++L + +++R++ S LVVSIA + G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 218 RVLHEAEYAKKRLVESNLRLVVSIARRHIGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFK 277
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EIAE
Sbjct: 278 FSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRIQRQLVQELGREPLPEEIAEK 337
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ I R ++ ++ PISL+ V D ++ D IP D P +++K+EL E
Sbjct: 338 MEITPEKAREILKISQEPISLESPVGDEADSSLGDFIPDADALSPSDFTSNEMLKKELAE 397
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TL++RE +LRL FGL+ + +E+G+ ++RERIRQI AL KL+ +
Sbjct: 398 VLETLTDREERVLRLRFGLEDGHTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSRR 457
Query: 374 LKVYM 378
LK +M
Sbjct: 458 LKDFM 462
>gi|354807988|ref|ZP_09041435.1| RNA polymerase sigma factor rpoD [Lactobacillus curvatus CRL 705]
gi|354513521|gb|EHE85521.1| RNA polymerase sigma factor rpoD [Lactobacillus curvatus CRL 705]
Length = 369
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 149/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 129 DQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDHRKGFKFSTYA 188
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI ++++
Sbjct: 189 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMNT 248
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T PE +L+K++L+ +L TL
Sbjct: 249 DKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEEHASYELLKEQLESVLDTL 308
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 309 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 368
>gi|395240851|ref|ZP_10417875.1| RNA polymerase sigma factor [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475633|emb|CCI87852.1| RNA polymerase sigma factor [Lactobacillus gigeriorum CRBIP 24.85]
Length = 371
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 156/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N + + L K +I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 116 NADQEIKLAK-RIEDNDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 174
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 175 VDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 234
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EIA +++ + VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 235 REPTPEEIAAEMDMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 294
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+++K++L++ L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL
Sbjct: 295 SYEMLKEQLEQTLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKAL 354
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N L+ ++
Sbjct: 355 RKLRHPSRSNQLRDFL 370
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 146/237 (61%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YWW
Sbjct: 175 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 234
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A +S+ R PT +IA L + V
Sbjct: 235 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPTIEDIARELEMTSPQV 294
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + +++ D+ PE + ++ ++++L++LL L+ R
Sbjct: 295 REVLLRVPRSVSLETKVGKEKDTELGELLE-TDDVTPEETLMRESLRRDLQQLLADLTSR 353
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D++++ FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 354 ERDVIQMRFGLGDGHPYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRIRDYL 410
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 149/239 (62%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++ +I++ LVVSIA Y GL++ DL+QEG+IGL+R ++F+ +G+K STY
Sbjct: 147 RAARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYAT 206
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP M ++++ ++ L + ++R PT EIAE + I S
Sbjct: 207 WWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIAEAMGITAS 266
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
VR +E + HP+SL+ V G M D I + P +++++++E+LQ L
Sbjct: 267 KVRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDDRVSTPVDAAAMTMLREQIEEVLQKLP 326
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
ERE I++L +GL + +E+G ++RERIRQI +AL KL+ ++ L+ Y+
Sbjct: 327 ERERKIIQLRYGLKDGRYRTLEEVGLEFGITRERIRQIEAVALRKLRHPHLGKKLRGYL 385
>gi|148654372|ref|YP_001274577.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148566482|gb|ABQ88627.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 402
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 149/238 (62%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++ +I++ LVVSIA Y GL++ DL+QEG+IGL+R ++F+ +G+K STY W
Sbjct: 164 EARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYTKGHKFSTYATW 223
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA++SRTIRLP M ++++ ++ L + ++R PT EIA+ + I +
Sbjct: 224 WIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHKLQQTMQREPTPEEIADAMGISSTK 283
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR +E + HP+SL+ V G M D I + P +++++L+E+LQ L E
Sbjct: 284 VRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASMLREQLEEVLQKLPE 343
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE I++L +GL + +E+G ++RERIRQI +AL KL+ ++ L+ Y+
Sbjct: 344 RERKIIQLRYGLKDGRYRTLEEVGMEFGITRERIRQIEAVALRKLRHPHLGKKLRGYL 401
>gi|37520903|ref|NP_924280.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35211898|dbj|BAC89275.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 350
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 101/249 (40%), Positives = 156/249 (62%), Gaps = 4/249 (1%)
Query: 132 KYKILCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
++ + +E E ++ ++++ LVVS+A YQG+GL L DLIQEG++GL+R A++F+ R
Sbjct: 98 QWSTIVREGERAKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQEGTLGLIRAAEKFDYTR 157
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY WWI+Q I RAIA ++RTIRLP + V +I +A LS++L R P++ EI
Sbjct: 158 GFKFSTYATWWIRQGITRAIAMQARTIRLPVHIVEKVNRIKKATRQLSQQLGRSPSEDEI 217
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
A+ + + +R + + P+SL+ V + D+I PE V + LM Q+
Sbjct: 218 AQAVEMDADQLRFVRKAIQLPVSLETPVGREEDTALGDLIQAKGNE-PEHGVVRDLMNQD 276
Query: 311 LKELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369
L+ LLQTL+ RE D+LRL +GL DG++ + E+G+ L+RERIRQI AL KL+
Sbjct: 277 LESLLQTLTPRERDVLRLRYGLIDGRSR-TLDEVGQQFGLTRERIRQIEARALRKLRHPQ 335
Query: 370 ILNNLKVYM 378
L ++ Y+
Sbjct: 336 RLQRVREYL 344
>gi|298246437|ref|ZP_06970243.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
gi|297553918|gb|EFH87783.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
Length = 422
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 150/246 (60%)
Query: 133 YKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
Y+ + + E+Q+R+ + LVVS+A Y G+G++L DLIQEG+IGL+R ++F+ +G+
Sbjct: 176 YRYISEGEEAQKRLTEANLRLVVSVAKKYIGRGMNLLDLIQEGNIGLIRAVEKFDYNKGF 235
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI RAIA+++RTIR+P M + ++ + L + L R PT EIA
Sbjct: 236 KFSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLIRISRRLLQDLGREPTSEEIAA 295
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
+ I VR I+ ++ P+SL+ + + + D I P QL+K++++
Sbjct: 296 QMEISAEKVREIIKVSQEPVSLETPIGEEDDSHLGDFIEDHTALAPADAASHQLLKEQVE 355
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
++L +L+ERE +L+L FGLD + +E+G+ ++RERIRQI AL KL+ +
Sbjct: 356 DVLDSLTERERKVLQLRFGLDDGRSRTLEEVGKEFHVTRERIRQIEAKALRKLRHPSRSR 415
Query: 373 NLKVYM 378
LK Y+
Sbjct: 416 KLKDYL 421
>gi|411117153|ref|ZP_11389640.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
gi|410713256|gb|EKQ70757.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoriales
cyanobacterium JSC-12]
Length = 414
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 150/238 (63%), Gaps = 3/238 (1%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YWW
Sbjct: 175 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 234
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A +S+ R T +IA+ L++ V
Sbjct: 235 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTATMEDIAKELDMTPPQV 294
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + D++ D+ PE + ++ ++++L++LL L+ R
Sbjct: 295 REVLLRVPRSVSLETKVGKEKDTELGDLLE-TDDITPEDTLMREALRRDLQQLLADLTSR 353
Query: 322 EADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D++++ FGL DGQ P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 354 ERDVIQMRFGLGDGQ-PYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 410
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 145/228 (63%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 98 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 157
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R P+ +E+A + +
Sbjct: 158 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEE 217
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + +++ G D +P V+ + +K +L++LL L
Sbjct: 218 EVKDLMCRARQPVSLEMKVGDGDDTELLELLAG-DGELPSDQVEGECLKGDLRDLLSQLP 276
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
E + +LR+ +G+DG+ P+S IGR++ +SR+R+R + L L++
Sbjct: 277 ELQGKVLRMRYGMDGEEPMSLTGIGRIIGISRDRVRNLERDGLAGLRR 324
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 160/247 (64%), Gaps = 5/247 (2%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI+ + + +++++I + LVV+IA YQ + + DLIQEGS+GL RG ++F+P +G+K
Sbjct: 88 KIIHQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFK 147
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA ++RTIRLP + + KI + LS++L R P+ +EIAE
Sbjct: 148 FSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSPSPNEIAEA 207
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELK 312
L + + +R R PISLD V D + +++ DE + P+ + ++LM+Q+L+
Sbjct: 208 LQLEPAQIREYFSIARQPISLDVKVGDNQDTELSELL--EDEGVSPDNYITQELMRQDLQ 265
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+LL L+ ++ ++RL FGL+ +S +IG+ +++SRER+RQ+ AL L++ +
Sbjct: 266 KLLGELTPQQQQVVRLRFGLEDGKELSLAKIGQRMNISRERVRQLEQQALAHLRKKR--S 323
Query: 373 NLKVYMV 379
++K Y+V
Sbjct: 324 SVKEYIV 330
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 97/248 (39%), Positives = 148/248 (59%), Gaps = 1/248 (0%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
++ ++ C R S++++I + LVV IA YQG+GLSL+DL+QEGS+GL+R ++F P+
Sbjct: 307 LQKRLHCGNR-SKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQA 365
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G + STY YWWI+Q I RA+ S+TIRLP + ++ KIAEA + PT EI
Sbjct: 366 GCRFSTYAYWWIRQTIRRALFLHSKTIRLPENFYALLGKIAEAKKSYIKEGNLHPTKEEI 425
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
A+ + I V + + + TR P+S++ AV T Q+I +P V KQLM+
Sbjct: 426 AKRVGITVDRLEMLLFSTRTPLSMERAVWADSDTTFQEITADSSIEIPNVCVAKQLMRSH 485
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
++ LL L +E +LRL FG++ S EIG++L + +ER+RQ+ AL KL+Q +
Sbjct: 486 VRNLLGILPPKERKVLRLRFGIEDGYEKSLTEIGKVLGVCKERVRQLESQALNKLKQCLV 545
Query: 371 LNNLKVYM 378
L Y+
Sbjct: 546 SQQLDAYV 553
>gi|86143196|ref|ZP_01061598.1| putative sigma factor A [Leeuwenhoekiella blandensis MED217]
gi|85830101|gb|EAQ48561.1| putative sigma factor A [Leeuwenhoekiella blandensis MED217]
Length = 288
Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 153/236 (64%), Gaps = 1/236 (0%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
ER+ ++ VVS+A YQ +GL L DLI EG++GL++ AKRF+ RG+K +Y WWI+
Sbjct: 52 ERLTKANLRFVVSVAKQYQNQGLKLPDLINEGNVGLVKAAKRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++AI+ SRT+RLP + G ++KI +A + L + L R P+ EIA+ L++ V+ V+L
Sbjct: 112 QSILQAISEHSRTVRLPLNKIGTISKINKAFSYLEQSLERPPSAEEIAKELDMTVAKVKL 171
Query: 264 AIERTRHPISLDGAVTD-RGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSERE 322
A++ + +S+D + + D++ + P+ + ++ + E++ L+TLS RE
Sbjct: 172 AMKNSGRNLSMDAPFKEGENDSNLYDVLKSGESPNPDADLMQESLGTEIERALETLSPRE 231
Query: 323 ADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+D+++L++GL G+ P + +EIG + LSRER+RQIR + +L+ T+ LK Y+
Sbjct: 232 SDVIKLNYGLGGEQPHTLQEIGEMFDLSRERVRQIREKGIRRLRHTSRSKVLKTYL 287
>gi|221633247|ref|YP_002522472.1| RNA polymerase sigma factor rpoD [Thermomicrobium roseum DSM 5159]
gi|221156052|gb|ACM05179.1| RNA polymerase sigma factor rpoD [Thermomicrobium roseum DSM 5159]
Length = 340
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+ +R +RS LVVSIA Y G+GLSL DLIQEG+IGL+R ++F+ RGY+ STY W
Sbjct: 101 EALQRFVRSNLRLVVSIAKRYVGRGLSLLDLIQEGNIGLMRAVEKFDWRRGYRFSTYATW 160
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA++ RTIRLP M + + L++ L R PT EIAE +++
Sbjct: 161 WIRQAITRAIADQGRTIRLPVHMTDSITRYHRTTTQLAQELGRQPTPEEIAEAMSVQPEK 220
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
+ + + +SLD +++ ++ D+I PE + ++ LM++++ E+L+ L+
Sbjct: 221 IAQIVRAAQRAVSLDQPLSEEDETSLGDLIADELAQSPEELAEESLMRRDIAEILEMLTP 280
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
RE +L+L +GL P + E+G LL +SRER+RQI AL KL++
Sbjct: 281 RERLVLQLRYGLSDGEPRTLAEVGDLLGISRERVRQIENEALRKLRR 327
>gi|395242363|ref|ZP_10419360.1| RNA polymerase sigma factor [Lactobacillus pasteurii CRBIP 24.76]
gi|394480095|emb|CCI85600.1| RNA polymerase sigma factor [Lactobacillus pasteurii CRBIP 24.76]
Length = 371
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 156/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N + + NL K +I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++
Sbjct: 116 NADQEINLAK-RIEENDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKA 174
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
+F+ G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 175 VDKFDYRLGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLG 234
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EI +++ + VR ++ + P+SL+ + + + D I D T PE+
Sbjct: 235 REPTPEEIGAEMDMATNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHA 294
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+++K++L++ L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL
Sbjct: 295 SYEMLKEQLEQTLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 354
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + N L+ ++
Sbjct: 355 RKLRHPSRSNQLRDFL 370
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 147/228 (64%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 72 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 131
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R PT +E+A + +
Sbjct: 132 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAGFVELPEE 191
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + +++ G D +PE V+ + +K +L++LL+ L
Sbjct: 192 EVKDLMCRARQPVSLEMKVGDGDDTELLELLAG-DGELPEEQVEVECLKGDLRDLLEQLP 250
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ + +LR+ +G+DG+ P+S IGR++ +SR+R+R + L L++
Sbjct: 251 DLQRRVLRMRYGMDGEEPMSLTGIGRVIGISRDRVRNLERDGLAGLRR 298
>gi|395244609|ref|ZP_10421570.1| RNA polymerase sigma factor [Lactobacillus hominis CRBIP 24.179]
gi|394483110|emb|CCI82578.1| RNA polymerase sigma factor [Lactobacillus hominis CRBIP 24.179]
Length = 379
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K STY
Sbjct: 139 DEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFKFSTYA 198
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI +++
Sbjct: 199 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPT 258
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T PE+ +L+K++L+++L TL
Sbjct: 259 DKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYELLKEQLEQVLDTL 318
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N LK ++
Sbjct: 319 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLKDFL 378
>gi|199598416|ref|ZP_03211835.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus HN001]
gi|258508506|ref|YP_003171257.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus GG]
gi|385828171|ref|YP_005865943.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus GG]
gi|199590735|gb|EDY98822.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus HN001]
gi|257148433|emb|CAR87406.1| RNA polymerase sigma factor [Lactobacillus rhamnosus GG]
gi|259649816|dbj|BAI41978.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus GG]
Length = 416
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 171 KIEQGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 230
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 231 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 290
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T PE +L+K++L+
Sbjct: 291 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLES 350
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 351 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 410
Query: 374 LKVYM 378
LK ++
Sbjct: 411 LKDFL 415
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 147/233 (63%), Gaps = 3/233 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+++ + R +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 91 RLMHQGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 150
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA +RTIRLP + + KI + L+++L R PT +EI
Sbjct: 151 FSTYAYWWIRQAITRAIAQHARTIRLPIHITEKLNKIKKVQRELAQQLGRSPTPAEIGSA 210
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELK 312
L +H S +R + RHP+SLD V D +Q+++ DE+ P+ + +L++Q+L
Sbjct: 211 LELHPSQIREYLLMARHPVSLDLRVGDNQDTELQELL--EDESASPDDYITGELLRQDLN 268
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
L+ L+ ++ D+L L FGL+ +S ++G L LSRER+RQ+ AL L
Sbjct: 269 NLMAELTPQQRDVLSLRFGLEDGHEMSLAKVGERLKLSRERVRQLEHQALAHL 321
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K L R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK
Sbjct: 92 KKLKSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYK 151
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+Q I RAIA KSR+IRLP + M+ K+ + LS+ L R PT E++E
Sbjct: 152 FSTYAYWWIRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKELSEY 211
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + + V+ + R P+SL+ + D + D++ + MP ++ MK +L+
Sbjct: 212 VELPETDVKDLMSRAGQPVSLETKIGDGEDTILLDLLSNEID-MPSEQIESDCMKGDLET 270
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL+ L E + +LR+ +G+DG P+S IGR+L +SR+R+R + L L++T ++
Sbjct: 271 LLEQLPELQNRVLRMRYGIDGDDPMSLTGIGRVLGISRDRVRNLERDGLRGLRKTG--DS 328
Query: 374 LKVYM 378
++ YM
Sbjct: 329 VEAYM 333
>gi|386852074|ref|YP_006270087.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
gi|359839578|gb|AEV88019.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
Length = 329
Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 147/245 (60%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
++ + R ++ ++ + LVVSIA Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 85 VIAEGRAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 144
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M V ++ A LS +L R P+ +EIA +
Sbjct: 145 STYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRDLSAQLGREPSIAEIATAM 204
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+ V I R P+SLD AV + G + D + D P V + ++ E++ +
Sbjct: 205 AVPEFQVIELISYDREPVSLDQAVGEDGESALGDFVAAVDPNQPGEGVSQGELRSEVEIV 264
Query: 315 LQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L TLSERE+ ++RL FGLD + E+GR LSRERIRQI + + KL+ + L
Sbjct: 265 LATLSERESAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTMLKLRDPERASRL 324
Query: 375 KVYMV 379
+ Y V
Sbjct: 325 EAYAV 329
>gi|406978397|gb|EKE00372.1| hypothetical protein ACD_22C00037G0001 [uncultured bacterium]
Length = 367
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 144/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++ + +S LVVSIA Y G+G+S DLIQEG+ GL+R ++++ +G+K STY WW
Sbjct: 130 AKDMLTKSNLRLVVSIAKKYMGRGMSFLDLIQEGNKGLIRAVEKYDWTKGFKFSTYATWW 189
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R PTD E+A L V
Sbjct: 190 IRQAITRAIADQARTIRIPVHMVETINKLIRTQRKLMQDLGREPTDDEVAAELETTPEKV 249
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + SL+ + D + D IP + P +QLM + L++ L +L+ER
Sbjct: 250 REILKIAQKTTSLETPIGDDEDSMLGDFIPDERQATPYESTSRQLMHENLEDALGSLTER 309
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E+ +LR+ FGLDG P++ +E+G++ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 310 ESKVLRMRFGLDGSKPLTLEEVGKVFGVTRERIRQIESKALRKLRHPSRRRKLQDYL 366
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 147/234 (62%), Gaps = 1/234 (0%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K L + ++ +++ + LVVS+A Y + + L DLIQEG+IG+ RG ++F+P +GY+
Sbjct: 75 KALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYR 134
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA K RTIRLP + + KI + LS++L R T SE+A
Sbjct: 135 FSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAATISELATA 194
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ VR +ER R P+SLD V D + ++I P E+ PE + ++ +L+
Sbjct: 195 LDLTTKQVREYLERARQPLSLDVRVGDNQDTELGELIEDPSES-PENFTLQASLRGDLER 253
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
L+ L++++ +L L FGLD P++ +IG LS+SRER+RQI AL+KL++
Sbjct: 254 LMADLTDQQQQVLHLRFGLDDGQPLTLAKIGDRLSISRERVRQIEREALSKLRK 307
>gi|269837239|ref|YP_003319467.1| RpoD subfamily RNA polymerase sigma-70 subunit [Sphaerobacter
thermophilus DSM 20745]
gi|269786502|gb|ACZ38645.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
Length = 390
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 154/261 (59%), Gaps = 19/261 (7%)
Query: 120 DKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGL 179
DKE+GE +++ +I++ LVVS+A Y G+GLS DLIQEG+IGL
Sbjct: 146 DKEDGE---------------KARAHLIQANLRLVVSVAKKYVGRGLSFLDLIQEGNIGL 190
Query: 180 LRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSR 239
++ +F+ +RG+K STY WWI+QAI RAI+++SRTIRLP + + ++ + + L +
Sbjct: 191 MKATDKFDYKRGFKFSTYATWWIRQAITRAISDQSRTIRLPVHVGETINRVKKTSQRLQQ 250
Query: 240 RLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPE 299
R PT E+A ++I VR ++ +RHP+SL+ V G + D I D+TMP
Sbjct: 251 IFEREPTFEEVARAMDIPEEKVRQVLDASRHPVSLEAPVGQEGDAFLGDFI--EDDTMPP 308
Query: 300 --RMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQI 357
+ ++L+K ++ + L L+ERE I+ L FGL+ + +E+GR ++RERIRQI
Sbjct: 309 PLELASQELLKHQISDALSKLTERERRIIILRFGLEDGQFRTLEEVGREFGITRERIRQI 368
Query: 358 RGIALTKLQQTNILNNLKVYM 378
AL KL+ + L+ Y+
Sbjct: 369 EAKALRKLRHPTYSHRLRGYL 389
>gi|392391315|ref|YP_006427918.1| sigma-70 family RNA polymerase sigma factor [Ornithobacterium
rhinotracheale DSM 15997]
gi|390522393|gb|AFL98124.1| RNA polymerase sigma factor, sigma-70 family [Ornithobacterium
rhinotracheale DSM 15997]
Length = 288
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 152/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GLSL DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLSLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI +A L + R P+ EI++ L++ V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKAYAALEQEHERAPSAEEISDQLDMTEEDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+I+ + +S+D + + + D++ + P+R + + ++ E++ LQTL+ REA
Sbjct: 172 SIKNSGRHVSMDAPLVEGEDSNLYDVLRSGESPNPDRELLNESLRIEIERALQTLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL+GQ P++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DLIRLYFGLNGQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|448823559|ref|YP_007416724.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7111]
gi|448277056|gb|AGE36480.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7111]
Length = 545
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 306 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 365
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A ++I V
Sbjct: 366 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITVD 425
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
TV + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 426 TVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 485
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 486 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 544
>gi|421768689|ref|ZP_16205399.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus LRHMDP2]
gi|421771160|ref|ZP_16207821.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus LRHMDP3]
gi|411185538|gb|EKS52665.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus LRHMDP2]
gi|411186595|gb|EKS53719.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus LRHMDP3]
Length = 416
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 171 KIEQGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 230
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 231 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 290
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T PE +L+K++L+
Sbjct: 291 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLES 350
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 351 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 410
Query: 374 LKVYM 378
LK ++
Sbjct: 411 LKDFL 415
>gi|229552308|ref|ZP_04441033.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
rhamnosus LMS2-1]
gi|385835366|ref|YP_005873140.1| RNA polymerase sigma factor rpoD [Lactobacillus rhamnosus ATCC
8530]
gi|229314290|gb|EEN80263.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
rhamnosus LMS2-1]
gi|355394857|gb|AER64287.1| RNA polymerase sigma factor rpoD [Lactobacillus rhamnosus ATCC
8530]
Length = 416
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 171 KIEQGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 230
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 231 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 290
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T PE +L+K++L+
Sbjct: 291 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLES 350
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 351 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 410
Query: 374 LKVYM 378
LK ++
Sbjct: 411 LKDFL 415
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K L R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK
Sbjct: 92 KKLKSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYK 151
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+Q I RAIA KSR+IRLP + M+ K+ + LS+ L R PT E++E
Sbjct: 152 FSTYAYWWIRQGITRAIAEKSRSIRLPIHITEMLNKLKKGQRELSQELSRTPTLKELSEY 211
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + + V+ + R P+SL+ + D + D++ + MP ++ MK +L+
Sbjct: 212 VELPETDVKDLMSRAGQPVSLETKIGDGEDTILLDLLSNEID-MPSEQIESDCMKGDLET 270
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL+ L E + +LR+ +G+DG P+S IGR+L +SR+R+R + L L++T ++
Sbjct: 271 LLEQLPELQNRVLRMRYGMDGDDPMSLTGIGRVLGISRDRVRNLERDGLRGLRKTG--DS 328
Query: 374 LKVYM 378
++ YM
Sbjct: 329 VEAYM 333
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 148/238 (62%), Gaps = 1/238 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++I S LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK STY YWW
Sbjct: 93 AKQKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWW 152
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I R IAN+ RT+RLP + + K+ + L R LRR PT+ E+AE L+I +
Sbjct: 153 IRQGITRTIANQGRTVRLPVHVVEQLNKLQGIHQDLRRSLRRKPTEDELAEALSISPQQL 212
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQT-LSE 320
RL + R +SL+ V + D++ + PE + + +M+QEL E+L++ L+E
Sbjct: 213 RLLEQVRRKSLSLNHRVGSEENSELMDLLEDYESLSPESQINELMMRQELLEVLRSVLNE 272
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE DIL L +GL P + E+ + SLSRER+RQI+ A+ KL++ + LK ++
Sbjct: 273 REQDILSLRYGLTTGVPYTLDEVSGMCSLSRERVRQIQAKAMRKLRRPQVAERLKGWI 330
>gi|172056869|ref|YP_001813329.1| RpoD family RNA polymerase sigma factor [Exiguobacterium sibiricum
255-15]
gi|407476679|ref|YP_006790556.1| RNA polymerase sigma factor rpoD [Exiguobacterium antarcticum B7]
gi|171989390|gb|ACB60312.1| RNA polymerase, sigma 70 subunit, RpoD family [Exiguobacterium
sibiricum 255-15]
gi|407060758|gb|AFS69948.1| RNA polymerase sigma factor rpoD [Exiguobacterium antarcticum B7]
Length = 361
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 156/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N E + L K +I + E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++
Sbjct: 106 NAEDEVELAK-RIEQNDEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 164
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
++F+ +GYK STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 165 VEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 224
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EI++ + I VR ++ + P+SL+ + + + D I D T P+
Sbjct: 225 REPTPEEISKEMEITPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATAPQDAA 284
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+++L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL
Sbjct: 285 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 344
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + LK ++
Sbjct: 345 RKLRHPSRSKRLKDFL 360
>gi|417989747|ref|ZP_12630248.1| RNA polymerase sigma factor [Lactobacillus casei A2-362]
gi|410537492|gb|EKQ12066.1| RNA polymerase sigma factor [Lactobacillus casei A2-362]
Length = 422
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 177 KIEQGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 236
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 237 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 296
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T PE +L+K++L+
Sbjct: 297 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLES 356
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 357 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 416
Query: 374 LKVYM 378
LK ++
Sbjct: 417 LKDFL 421
>gi|418070721|ref|ZP_12707996.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus R0011]
gi|423078927|ref|ZP_17067603.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus ATCC
21052]
gi|357540141|gb|EHJ24158.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus R0011]
gi|357548830|gb|EHJ30689.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus ATCC
21052]
Length = 416
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 171 KIEQGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 230
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 231 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 290
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T PE +L+K++L+
Sbjct: 291 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLES 350
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 351 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 410
Query: 374 LKVYM 378
LK ++
Sbjct: 411 LKDFL 415
>gi|56421017|ref|YP_148335.1| RNA polymerase sigma factor RpoD [Geobacillus kaustophilus HTA426]
gi|261417657|ref|YP_003251339.1| RNA polymerase sigma factor RpoD [Geobacillus sp. Y412MC61]
gi|297529352|ref|YP_003670627.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus sp.
C56-T3]
gi|319767537|ref|YP_004133038.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus sp.
Y412MC52]
gi|375009568|ref|YP_004983201.1| RNA polymerase sigma factor rpoD [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|448238761|ref|YP_007402819.1| RNA polymerase sigma factor [Geobacillus sp. GHH01]
gi|56380859|dbj|BAD76767.1| DNA-directed RNA polymerase major sigma-43 factor (sigma-A)
[Geobacillus kaustophilus HTA426]
gi|261374114|gb|ACX76857.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
Y412MC61]
gi|297252604|gb|ADI26050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
C56-T3]
gi|317112403|gb|ADU94895.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
Y412MC52]
gi|359288417|gb|AEV20101.1| RNA polymerase sigma factor rpoD [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|445207603|gb|AGE23068.1| RNA polymerase sigma factor [Geobacillus sp. GHH01]
Length = 375
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 130 RIEQGDEEAKRRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYK 189
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 190 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEE 249
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 250 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLED 309
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 310 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 369
Query: 374 LKVYM 378
LK ++
Sbjct: 370 LKDFL 374
>gi|260101316|ref|ZP_05751553.1| RNA polymerase sigma factor rpoD [Lactobacillus helveticus DSM
20075]
gi|260084901|gb|EEW69021.1| RNA polymerase sigma factor rpoD [Lactobacillus helveticus DSM
20075]
Length = 370
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 150/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K STY
Sbjct: 130 DEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYCLGFKFSTYA 189
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI +N+
Sbjct: 190 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMNMPT 249
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ VR ++ + P+SL+ + + + D I D T PE+ +++K++L+++L+TL
Sbjct: 250 NKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETL 309
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N L+ +M
Sbjct: 310 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
>gi|366085904|ref|ZP_09452389.1| RNA polymerase sigma factor RpoD [Lactobacillus zeae KCTC 3804]
Length = 416
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 171 KIEQGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 230
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 231 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 290
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T PE +L+K++L+
Sbjct: 291 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLES 350
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 351 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 410
Query: 374 LKVYM 378
LK ++
Sbjct: 411 LKDFL 415
>gi|116494985|ref|YP_806719.1| RNA polymerase sigma factor RpoD [Lactobacillus casei ATCC 334]
gi|191638497|ref|YP_001987663.1| RNA polymerase sigma factor RpoD [Lactobacillus casei BL23]
gi|227535009|ref|ZP_03965058.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|301066553|ref|YP_003788576.1| DNA-directed RNA polymerase sigma70/sigma32 subunit [Lactobacillus
casei str. Zhang]
gi|385820205|ref|YP_005856592.1| RNA polymerase sigma-70 subunit RpoD [Lactobacillus casei LC2W]
gi|385823402|ref|YP_005859744.1| RNA polymerase sigma-70 subunit RpoD [Lactobacillus casei BD-II]
gi|417980791|ref|ZP_12621470.1| RNA polymerase sigma factor [Lactobacillus casei 12A]
gi|417993010|ref|ZP_12633361.1| RNA polymerase sigma factor [Lactobacillus casei CRF28]
gi|417996364|ref|ZP_12636645.1| RNA polymerase sigma factor [Lactobacillus casei M36]
gi|417999242|ref|ZP_12639453.1| RNA polymerase sigma factor [Lactobacillus casei T71499]
gi|418002184|ref|ZP_12642307.1| RNA polymerase sigma factor [Lactobacillus casei UCD174]
gi|418008091|ref|ZP_12647961.1| RNA polymerase sigma factor [Lactobacillus casei UW4]
gi|418015186|ref|ZP_12654763.1| RNA polymerase sigma factor [Lactobacillus casei Lpc-37]
gi|116105135|gb|ABJ70277.1| RNA polymerase, sigma 70 subunit, RpoD [Lactobacillus casei ATCC
334]
gi|190712799|emb|CAQ66805.1| RNA polymerase sigma factor [Lactobacillus casei BL23]
gi|227187324|gb|EEI67391.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
paracasei subsp. paracasei ATCC 25302]
gi|300438960|gb|ADK18726.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Lactobacillus casei str. Zhang]
gi|327382532|gb|AEA54008.1| RNA polymerase, sigma 70 subunit, RpoD [Lactobacillus casei LC2W]
gi|327385729|gb|AEA57203.1| RNA polymerase, sigma 70 subunit, RpoD [Lactobacillus casei BD-II]
gi|410524302|gb|EKP99214.1| RNA polymerase sigma factor [Lactobacillus casei 12A]
gi|410532419|gb|EKQ07127.1| RNA polymerase sigma factor [Lactobacillus casei CRF28]
gi|410535675|gb|EKQ10292.1| RNA polymerase sigma factor [Lactobacillus casei M36]
gi|410539518|gb|EKQ14046.1| RNA polymerase sigma factor [Lactobacillus casei T71499]
gi|410544727|gb|EKQ19046.1| RNA polymerase sigma factor [Lactobacillus casei UCD174]
gi|410547571|gb|EKQ21802.1| RNA polymerase sigma factor [Lactobacillus casei UW4]
gi|410552010|gb|EKQ26049.1| RNA polymerase sigma factor [Lactobacillus casei Lpc-37]
Length = 422
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 177 KIEQGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 236
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 237 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 296
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T PE +L+K++L+
Sbjct: 297 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLES 356
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 357 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 416
Query: 374 LKVYM 378
LK ++
Sbjct: 417 LKDFL 421
>gi|294501280|ref|YP_003564980.1| RNA polymerase sigma factor [Bacillus megaterium QM B1551]
gi|295706627|ref|YP_003599702.1| RNA polymerase sigma factor [Bacillus megaterium DSM 319]
gi|294351217|gb|ADE71546.1| RNA polymerase sigma factor [Bacillus megaterium QM B1551]
gi|294804286|gb|ADF41352.1| RNA polymerase sigma factor [Bacillus megaterium DSM 319]
Length = 377
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 156/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
+ E + NL K +I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++
Sbjct: 122 SAEEEINLAK-RIEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 180
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
++F+ +GYK STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 181 VEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 240
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R P+ EIAE +++ VR ++ + P+SL+ + + + D I D T P
Sbjct: 241 REPSPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHA 300
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+++L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL
Sbjct: 301 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + LK ++
Sbjct: 361 RKLRHPSRSKRLKDFL 376
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/234 (41%), Positives = 147/234 (62%), Gaps = 1/234 (0%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K L + ++ +++ + LVVS+A Y + + L DLIQEG+IG+ RG ++F+P +GY+
Sbjct: 75 KALHEGEAAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYR 134
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA K RTIRLP + + KI + LS++L R T SE+A
Sbjct: 135 FSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKTQRQLSQKLGRAATISELATS 194
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ VR +ER R P+SLD V D + ++I P E+ PE + ++ +L+
Sbjct: 195 LDLTTKQVREYLERARQPLSLDVRVGDNQDTELGELIEDPSES-PENFTLQASLRGDLER 253
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
L+ L++++ +L L FGLD P++ +IG LS+SRER+RQI AL+KL++
Sbjct: 254 LMADLTDQQQQVLHLRFGLDDGQPLTLAKIGDRLSISRERVRQIEREALSKLRK 307
>gi|161507646|ref|YP_001577600.1| RNA polymerase sigma factor RpoD [Lactobacillus helveticus DPC
4571]
gi|160348635|gb|ABX27309.1| RNA polymerase sigma factor [Lactobacillus helveticus DPC 4571]
Length = 356
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 150/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K STY
Sbjct: 116 DEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYCLGFKFSTYA 175
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI +N+
Sbjct: 176 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMNMPT 235
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ VR ++ + P+SL+ + + + D I D T PE+ +++K++L+++L+TL
Sbjct: 236 NKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETL 295
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N L+ +M
Sbjct: 296 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 355
>gi|443321959|ref|ZP_21050996.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442788351|gb|ELR98047.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 353
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/256 (37%), Positives = 155/256 (60%), Gaps = 7/256 (2%)
Query: 124 GELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGA 183
G+LD +L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R
Sbjct: 104 GQLD------NLLYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAVGLNRAT 157
Query: 184 KRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRR 243
++F+P +GYK STY YWWI+QAI R IAN +RTIRLP + + K+ +A VL ++L R
Sbjct: 158 EKFDPNKGYKFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHR 217
Query: 244 MPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQ 303
P + EIA + I +R +E R +SL+ + + D++ + +PE +
Sbjct: 218 NPKEEEIATEMEISPLQLRYLLELKRQSLSLNHRIGKGEDTELVDLLQDTEIQLPEDKIS 277
Query: 304 KQLMKQELKELL-QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+ +M+QE+ E+L + L+ERE D++ L +GL + E+G + +LSRER+RQI+ A+
Sbjct: 278 ETMMRQEISEVLAEVLTERERDVISLRYGLTTDQAYTLDEVGGMFNLSRERVRQIQTKAM 337
Query: 363 TKLQQTNILNNLKVYM 378
KL++ + LK ++
Sbjct: 338 RKLRRPQVARRLKGWL 353
>gi|417008518|ref|ZP_11945637.1| RNA polymerase sigma factor RpoD [Lactobacillus helveticus MTCC
5463]
gi|328465879|gb|EGF37062.1| RNA polymerase sigma factor RpoD [Lactobacillus helveticus MTCC
5463]
Length = 370
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 150/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K STY
Sbjct: 130 DEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYCLGFKFSTYA 189
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI +N+
Sbjct: 190 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMNMPT 249
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ VR ++ + P+SL+ + + + D I D T PE+ +++K++L+++L+TL
Sbjct: 250 NKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKDATSPEQHASYEMLKEQLEQVLETL 309
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + N L+ +M
Sbjct: 310 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFM 369
>gi|449126353|ref|ZP_21762644.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
SP33]
gi|448948060|gb|EMB28899.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
SP33]
Length = 286
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 147/251 (58%), Gaps = 3/251 (1%)
Query: 131 VKYKILCKERE--SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
+KY L ++ + ++ ++ S VV++A YQ +GL L DLI EG+IGL+ A+RF+
Sbjct: 35 IKYAKLAEKGDEYAKNMLVNSNLRFVVNVAKKYQNQGLPLMDLISEGNIGLMNAAERFDV 94
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
+GYK +Y WWIKQ+I++AI KSR IRLP + A + +I +A + +
Sbjct: 95 SKGYKFISYAVWWIKQSILKAICEKSRMIRLPLNRANELVQIEKAKKEIDFSGNETKELN 154
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAVTDR-GCMTMQDIIPGPDETMPERMVQKQLM 307
EIA +LN+ S V + R PIS+D V D G ++ D + MPE +
Sbjct: 155 EIAGILNMDNSMVHTIMNAAREPISIDAPVFDEPGSSSVNDFLQDETHQMPEDYAMDMSL 214
Query: 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ E+ ELL+ L +REA+I+R FGLDG P+S KE+G + +L++ERIRQI AL +L++
Sbjct: 215 RDEVNELLKNLDDREAEIIRYRFGLDGYAPLSLKEVGLIFNLTKERIRQIEKKALQQLKK 274
Query: 368 TNILNNLKVYM 378
L VY+
Sbjct: 275 PAEKQKLAVYV 285
>gi|384044875|ref|YP_005492892.1| RNA polymerase sigma factor [Bacillus megaterium WSH-002]
gi|345442566|gb|AEN87583.1| RNA polymerase sigma factor [Bacillus megaterium WSH-002]
Length = 377
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 156/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
+ E + NL K +I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++
Sbjct: 122 SAEEEINLAK-RIEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 180
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
++F+ +GYK STY WWI+QAI RAIA+++RTIR+P M + K+ L + L
Sbjct: 181 VEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLG 240
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R P+ EIAE +++ VR ++ + P+SL+ + + + D I D T P
Sbjct: 241 REPSPEEIAEDMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHA 300
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+++L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL
Sbjct: 301 AYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 360
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + LK ++
Sbjct: 361 RKLRHPSRSKRLKDFL 376
>gi|367470532|ref|ZP_09470228.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
gi|365814386|gb|EHN09588.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
Length = 388
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 136/226 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++ +I + LVVSIA Y G+GLS DLIQEGS+GL+R ++F+ RGYK STY W
Sbjct: 151 EAKRAMIEANLRLVVSIAKAYLGRGLSFLDLIQEGSLGLIRAVEKFDYRRGYKFSTYATW 210
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QA+ RAIA+K RTIR+P M + K+ L + L R PT EIA + + V
Sbjct: 211 WIRQAVTRAIADKGRTIRIPVHMVEKLNKVVHVERQLVQTLGRQPTPEEIASEVEMEVRD 270
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + ++ PISL+ V + ++ D + D P + +QL ++ ++ L TL +
Sbjct: 271 VRDILRISQQPISLEKPVGEDEESSLGDFVEDKDAESPFELTSEQLRREHVRRALSTLPK 330
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
RE +++ + FGL G P + +E+GR ++RERIRQI L KL+
Sbjct: 331 REREVIEMRFGLSGDQPCTLEEVGRAFDVTRERIRQIESHTLKKLE 376
>gi|258539717|ref|YP_003174216.1| RNA polymerase sigma factor RpoD [Lactobacillus rhamnosus Lc 705]
gi|257151393|emb|CAR90365.1| RNA polymerase sigma factor [Lactobacillus rhamnosus Lc 705]
Length = 416
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 171 KIEQGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 230
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 231 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 290
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T PE +L+K++L+
Sbjct: 291 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLES 350
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 351 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 410
Query: 374 LKVYM 378
LK ++
Sbjct: 411 LKDFL 415
>gi|327404710|ref|YP_004345548.1| RpoD subfamily RNA polymerase sigma-70 subunit [Fluviicola
taffensis DSM 16823]
gi|327320218|gb|AEA44710.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fluviicola
taffensis DSM 16823]
Length = 289
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 155/247 (62%), Gaps = 2/247 (0%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I ++ + ER+ ++ VVS++ YQ +GLSL DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 RIKAGDKRALERLTKANLRFVVSVSKQYQNQGLSLPDLINEGNLGLIKAAERFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A ++R +RLP + G + KI A + L + R P+ E+AE
Sbjct: 102 FISYAVWWIRQSILQALAEQARIVRLPLNKIGTINKINRAYSELEQVYERPPSADELAEF 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVT--DRGCMTMQDIIPGPDETMPERMVQKQLMKQEL 311
L V VR ++ T +S+D + D +M D++P PE + K+ +++E+
Sbjct: 162 LECSVEDVRQSLANTARHLSMDAPLVDGDESSSSMYDVLPNDALPSPENELNKESLRKEI 221
Query: 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
+ L +LS RE D++RL++GL+G+ ++ +EIG L L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ERSLSSLSGREGDVVRLYYGLNGKHALTLEEIGDLFDLTRERVRQIKEKAIRRLKHTSRS 281
Query: 372 NNLKVYM 378
LK Y+
Sbjct: 282 RMLKSYL 288
>gi|89100479|ref|ZP_01173341.1| RNA polymerase sigma factor [Bacillus sp. NRRL B-14911]
gi|89084822|gb|EAR63961.1| RNA polymerase sigma factor [Bacillus sp. NRRL B-14911]
Length = 374
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 134 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYA 193
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE +++
Sbjct: 194 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTP 253
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T P +L+K++L+++L TL
Sbjct: 254 DKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTL 313
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 314 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 152/245 (62%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 145 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 204
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L +RL R P + E+AE L
Sbjct: 205 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQRLGRNPNEIEMAEALE 264
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 265 IPPQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNESMMRQEIWEVL 324
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 325 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 384
Query: 375 KVYMV 379
K +++
Sbjct: 385 KGWLI 389
>gi|380030852|ref|XP_003699053.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Apis florea]
Length = 382
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 142/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K STY WWI+QAI RAIA+
Sbjct: 156 LVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYSLGFKFSTYATWWIRQAITRAIAD 215
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R PT EI +++ S VR ++ + P+
Sbjct: 216 QARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTSKVRDILKIAQEPV 275
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I D T PE+ +++K++L+E+L TL++RE ++LRL FGL
Sbjct: 276 SLETPIGEEDDSHLGDFIKDKDATSPEQHASYEMLKEQLEEVLDTLTDREENVLRLRFGL 335
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +E+G++ ++RERIRQI AL KL+ + N L+ ++
Sbjct: 336 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSNQLRDFL 381
>gi|297570260|ref|YP_003691604.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfurivibrio
alkaliphilus AHT2]
gi|296926175|gb|ADH86985.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfurivibrio
alkaliphilus AHT2]
Length = 555
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 139/228 (60%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
RE++ R+++S LVVS+A Y G+GL L DL+QEG+IGL++ ++F RGYK STY
Sbjct: 314 REAKNRLVQSNLRLVVSVAKKYAGRGLQLLDLVQEGNIGLMKAVEKFEYRRGYKFSTYAT 373
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QA+ RAIA++ RTIR+P M + ++ + R+ R PT E+AE L + ++
Sbjct: 374 WWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEYQRQHGREPTPEEMAEHLGVDIA 433
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ ++ + P+SLD V + D I D T P+ ++ L +L+TL+
Sbjct: 434 KVKSILKIAKEPLSLDTPVGSGEDSFLSDFIEDADSTSPDEATIYDSLQDNLARVLKTLT 493
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
RE +LRL FG+D T ++ +E+G S++RERIRQI AL KL+
Sbjct: 494 PREEMVLRLRFGIDTATDLTLEEVGENFSVTRERIRQIEAKALKKLKH 541
>gi|326791438|ref|YP_004309259.1| RpoD subfamily RNA polymerase sigma-70 subunit [Clostridium
lentocellum DSM 5427]
gi|326542202|gb|ADZ84061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
lentocellum DSM 5427]
Length = 363
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 151/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++E+++++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 123 DQEAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYA 182
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIA+ +++ V
Sbjct: 183 TWWIRQAITRAIADQARTIRIPVHMVETINKLMRVSRQLLQELGRDPQPEEIAKRMDMPV 242
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
S VR ++ ++ P+SL+ + + + D IP D +P L+K++L E+L TL
Sbjct: 243 SKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDEDIPVPAEAAAFTLLKEQLIEVLDTL 302
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FGLD + +E+G+ S++RERIRQI AL KL+ + LK Y+
Sbjct: 303 TEREQKVLRLRFGLDDGRARTLEEVGKEFSVTRERIRQIEAKALRKLRHPSRSKKLKDYL 362
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 149/247 (60%), Gaps = 5/247 (2%)
Query: 133 YKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
Y I CK++ +I+S LV+SIA YQG G++++DL+QEG GL+RGA++F+ +G+
Sbjct: 336 YGIRCKDK-----MIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGF 390
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY +WWIKQA+ ++++++SRTIRLP M ++ EA L R P + E+AE
Sbjct: 391 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 450
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
+ + + + + P SLD + + ++I PD E ++ KQ M+++L+
Sbjct: 451 ATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLE 510
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
++L +L+ RE ++R +GL+ + +EIG L+ +SRERIRQI A KL+
Sbjct: 511 KVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTK 570
Query: 373 NLKVYMV 379
+L+ Y+V
Sbjct: 571 HLQQYLV 577
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 149/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ Y LCK++ +I+S LV+SIA YQG G++L+DL+QEG GL+RGA++F+ +
Sbjct: 336 LNYGTLCKDK-----MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 390
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ + ++++SRTIRLP M ++ EA L R P D EI
Sbjct: 391 GFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEI 450
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SL+ + + ++I P+ E M+ KQ MKQ+
Sbjct: 451 AEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQD 510
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L+++L +L+ RE ++R FG++ + +EIG ++ +SRERIRQI A KL+
Sbjct: 511 LEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKR 570
Query: 371 LNNLKVYMV 379
+L+ Y++
Sbjct: 571 TKHLQQYVM 579
>gi|298247391|ref|ZP_06971196.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
gi|297550050|gb|EFH83916.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
Length = 385
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 152/248 (61%), Gaps = 2/248 (0%)
Query: 132 KYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
++ I+ + +++R+ + LVVSIA Y G+G++L DLIQEG+ GL+ ++F+ RG
Sbjct: 138 EHAIMDSAQNARDRLTEANLRLVVSIARKYMGRGMALADLIQEGNAGLMLAVEKFDYTRG 197
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
+K STY WWI+QAI RAIAN++RTIRLP V ++ ++ L + L R P+ EIA
Sbjct: 198 FKFSTYATWWIRQAINRAIANQARTIRLPVHFHEAVNRLHRTSSQLFQELGREPSAEEIA 257
Query: 252 EMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQEL 311
E ++I V TV +E + PISL+ V D G ++ D + P + + ++++++
Sbjct: 258 ERMHISVDTVYDILEAGKQPISLESPVGDDGDSSLGDFVEDQVTASPADITTRNILREQI 317
Query: 312 KELLQTLSEREADILRLHFG-LDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
+L L+ERE I++ HFG LDG+ + EIG L LSRER+RQI AL KL+Q+
Sbjct: 318 AHVLDELNERERHIIQYHFGFLDGKEH-TLAEIGENLHLSRERVRQIEAKALRKLRQSYS 376
Query: 371 LNNLKVYM 378
LK ++
Sbjct: 377 SRQLKDFL 384
>gi|387907278|ref|YP_006337614.1| RNA polymerase sigma-70 factor [Blattabacterium sp. (Blaberus
giganteus)]
gi|387582171|gb|AFJ90949.1| RNA polymerase sigma-70 factor [Blattabacterium sp. (Blaberus
giganteus)]
Length = 287
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 154/235 (65%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
++++ + VVS+A YQ +GLSL DLI EG++GL++G RF+ RG+K +YV WWI+
Sbjct: 52 DKLVNANLRFVVSVAKQYQNQGLSLCDLINEGNLGLIKGILRFDETRGFKCISYVVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
QAI++AIA +SR+IR P + ++ KI + L + L+R P+ EIAE L+++ V
Sbjct: 112 QAILQAIAEQSRSIRQPTNKLALLNKILKTLAQLEQELQRTPSAREIAEYLDMNEKDVED 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+I+ + +S+D + + + D++ + P+ ++K+ +++++K +L+TLSERE
Sbjct: 172 SIKNSGRHVSMDAPLIEGEDSNLYDLVRSDESPRPDEHLEKESLRKDIKRILETLSERER 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++ LHFGL+G P++ +E+G+ L+RER+RQI IAL +L+ ++ LK Y+
Sbjct: 232 RVIILHFGLNGSPPMTLEEVGQFCDLTRERVRQIESIALKRLKHSSRSKILKPYL 286
>gi|163119552|ref|YP_079858.2| RNA polymerase sigma factor RpoD [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|319644974|ref|ZP_07999207.1| RNA polymerase sigma factor rpoD [Bacillus sp. BT1B_CT2]
gi|404489950|ref|YP_006714056.1| RNA polymerase sigma factor RpoD [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423683045|ref|ZP_17657884.1| RNA polymerase sigma factor RpoD [Bacillus licheniformis WX-02]
gi|52348949|gb|AAU41583.1| RNA polymerase sigma factor SigA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|145903060|gb|AAU24220.2| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|317392783|gb|EFV73577.1| RNA polymerase sigma factor rpoD [Bacillus sp. BT1B_CT2]
gi|383439819|gb|EID47594.1| RNA polymerase sigma factor RpoD [Bacillus licheniformis WX-02]
Length = 373
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 128 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYK 187
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 247
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 248 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 307
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 308 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 367
Query: 374 LKVYM 378
LK ++
Sbjct: 368 LKDFL 372
>gi|452975086|gb|EME74905.1| RNA polymerase sigma factor RpoD [Bacillus sonorensis L12]
Length = 373
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 128 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYK 187
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 247
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 248 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 307
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 308 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 367
Query: 374 LKVYM 378
LK ++
Sbjct: 368 LKDFL 372
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 148/229 (64%), Gaps = 7/229 (3%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ +++ + LVVS+A Y + + L DLIQEG+IG+ RG ++F+P +GY+ STY YWW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA K+R IRLP + + KI +A LS++L R T +E+AE L + V
Sbjct: 143 IRQAITRAIAEKARAIRLPIHITEKLNKIKKAQRSLSQKLGRAATVTELAEELELTPPQV 202
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIP--GPDETMPERMVQKQLMKQELKELLQTLS 319
R +ER R P+SLD V D + D++ GP PE V + M+ +L++LL L+
Sbjct: 203 REYLERARQPLSLDLRVGDHQDTELGDLLEDTGPS---PEDFVTQSAMQMDLEKLLSDLT 259
Query: 320 EREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+++ D+L L FGL DGQ P++ +IG LS+SRER+RQI AL KL++
Sbjct: 260 QQQRDVLSLRFGLADGQ-PLTLAKIGDRLSISRERVRQIEREALAKLRK 307
>gi|428280009|ref|YP_005561744.1| RNA polymerase sigma factor [Bacillus subtilis subsp. natto
BEST195]
gi|291484966|dbj|BAI86041.1| RNA polymerase sigma factor [Bacillus subtilis subsp. natto
BEST195]
Length = 371
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 126 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYK 185
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 186 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 245
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 246 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 305
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 306 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 365
Query: 374 LKVYM 378
LK ++
Sbjct: 366 LKDFL 370
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 149/247 (60%), Gaps = 5/247 (2%)
Query: 133 YKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
Y I CK++ +I+S LV+SIA YQG G++++DL+QEG GL+RGA++F+ +G+
Sbjct: 333 YGIRCKDK-----MIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGF 387
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY +WWIKQA+ ++++++SRTIRLP M ++ EA L R P + E+AE
Sbjct: 388 KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPNNEEVAE 447
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
+ + + + + P SLD + + ++I PD E ++ KQ M+++L+
Sbjct: 448 ATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEELLIKQFMREDLE 507
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
++L +L+ RE ++R +GL+ + +EIG L+ +SRERIRQI A KL+
Sbjct: 508 KVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCAFRKLKNKRRTK 567
Query: 373 NLKVYMV 379
+L+ Y+V
Sbjct: 568 HLQQYLV 574
>gi|404393633|ref|ZP_10985559.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium CM2]
gi|404278859|gb|EJZ44345.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium CM2]
Length = 492
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 142/234 (60%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
+I+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+Q
Sbjct: 258 KIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQ 317
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLA 264
AI RAIA+++RTIR+P M + K+ N L + L R P EIAE +N+ +
Sbjct: 318 AITRAIADQARTIRIPVHMVETINKLIRVNRQLVQELGRDPRPDEIAEQMNMPQEKIMEI 377
Query: 265 IERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREAD 324
++ + P+SL+ + + + D IP D P L+K++++E+L+TL++RE
Sbjct: 378 MKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSLLKEQIEEVLETLTDREKK 437
Query: 325 ILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+L+L FGLD + +E+G+ ++RERIRQI AL KL+ N LK Y+
Sbjct: 438 VLKLRFGLDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRGPKKSNKLKDYL 491
>gi|157693020|ref|YP_001487482.1| RNA polymerase sigma factor RpoD [Bacillus pumilus SAFR-032]
gi|389571818|ref|ZP_10161906.1| RNA polymerase sigma factor RpoD [Bacillus sp. M 2-6]
gi|407978487|ref|ZP_11159318.1| RNA polymerase sigma factor RpoD [Bacillus sp. HYC-10]
gi|157681778|gb|ABV62922.1| DNA-directed RNA polymerase sigma subunit SigA [Bacillus pumilus
SAFR-032]
gi|388428304|gb|EIL86101.1| RNA polymerase sigma factor RpoD [Bacillus sp. M 2-6]
gi|407415045|gb|EKF36661.1| RNA polymerase sigma factor RpoD [Bacillus sp. HYC-10]
Length = 373
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 128 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYK 187
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 247
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 248 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 307
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 308 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 367
Query: 374 LKVYM 378
LK ++
Sbjct: 368 LKDFL 372
>gi|311069121|ref|YP_003974044.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus 1942]
gi|419820232|ref|ZP_14343844.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus C89]
gi|310869638|gb|ADP33113.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus 1942]
gi|388475644|gb|EIM12355.1| RNA polymerase sigma factor RpoD [Bacillus atrophaeus C89]
Length = 373
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 128 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYK 187
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 247
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 248 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 307
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 308 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 367
Query: 374 LKVYM 378
LK ++
Sbjct: 368 LKDFL 372
>gi|239631415|ref|ZP_04674446.1| DNA-directed RNA polymerase [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|409997357|ref|YP_006751758.1| RNA polymerase sigma factor rpoD [Lactobacillus casei W56]
gi|417983523|ref|ZP_12624159.1| RNA polymerase sigma factor [Lactobacillus casei 21/1]
gi|417986865|ref|ZP_12627430.1| RNA polymerase sigma factor [Lactobacillus casei 32G]
gi|418005214|ref|ZP_12645210.1| RNA polymerase sigma factor [Lactobacillus casei UW1]
gi|239525880|gb|EEQ64881.1| DNA-directed RNA polymerase [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|406358369|emb|CCK22639.1| RNA polymerase sigma factor rpoD [Lactobacillus casei W56]
gi|410524599|gb|EKP99507.1| RNA polymerase sigma factor [Lactobacillus casei 32G]
gi|410527792|gb|EKQ02654.1| RNA polymerase sigma factor [Lactobacillus casei 21/1]
gi|410547467|gb|EKQ21700.1| RNA polymerase sigma factor [Lactobacillus casei UW1]
Length = 352
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 107 KIEQGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 166
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 167 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 226
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T PE +L+K++L+
Sbjct: 227 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPEDHASYELLKEQLES 286
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 287 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 346
Query: 374 LKVYM 378
LK ++
Sbjct: 347 LKDFL 351
>gi|442804827|ref|YP_007372976.1| RNA polymerase sigma factor RpoD [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740677|gb|AGC68366.1| RNA polymerase sigma factor RpoD [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 443
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
E E ++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 203 EEEPKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYA 262
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA+ + + V
Sbjct: 263 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAQEMGMSV 322
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D IP D P+ L+K++L ++L TL
Sbjct: 323 EKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPDESAAFTLLKEQLMDVLDTL 382
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 383 TPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 442
>gi|402838551|ref|ZP_10887056.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium OBRC8]
gi|402272765|gb|EJU21981.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium OBRC8]
Length = 492
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 142/234 (60%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
+I+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+Q
Sbjct: 258 KIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQ 317
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLA 264
AI RAIA+++RTIR+P M + K+ N L + L R P EIAE +N+ +
Sbjct: 318 AITRAIADQARTIRIPVHMVETINKLIRVNRQLVQELGRDPRPDEIAEQMNMPQEKIMEI 377
Query: 265 IERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREAD 324
++ + P+SL+ + + + D IP D P L+K++++E+L+TL++RE
Sbjct: 378 MKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSLLKEQIEEVLETLTDREKK 437
Query: 325 ILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+L+L FGLD + +E+G+ ++RERIRQI AL KL+ N LK Y+
Sbjct: 438 VLKLRFGLDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRGPKKSNKLKDYL 491
>gi|417304059|ref|ZP_12091095.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica WH47]
gi|327539652|gb|EGF26260.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica WH47]
Length = 567
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 141/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y+ +GLS DLIQEG+ GL+R ++ RG+K STY WWI+QAI RAIA+
Sbjct: 338 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGFKFSTYATWWIRQAITRAIAD 397
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M +++K+ +A L++ LRR PT +IAE ++ + VR ++ RHP+
Sbjct: 398 QARTIRIPVHMIDVLSKLRQAQKRLTQTLRREPTYEDIAEATDVPIEEVRRVMDIGRHPV 457
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + + + + + P R+ +++ ++ ELL+TL+ RE +I+RL +GL
Sbjct: 458 SLDRPVGEGEDSSFGEFVQDSETDNPVRIAASGMLRNKIDELLKTLTFREREIIRLRYGL 517
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ +E GR+ ++RER+RQI A+ K+Q + L Y+
Sbjct: 518 VDGYSYTLEECGRIFKVTRERVRQIEAKAVAKMQSPSRAERLSSYL 563
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 146/227 (64%), Gaps = 2/227 (0%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+K K ER ++ER++ + LVVSIA Y + + L DLIQEG+IGL+RG ++F+P R
Sbjct: 90 LKKKFRLGER-AKERMVAANLRLVVSIAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPAR 148
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
GYK STY YWWI+Q I RAIA KSR IRLP + M+ K+ + LS++L R P+ +E+
Sbjct: 149 GYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRDLSQQLSRTPSVAEL 208
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE +++ V+ + + P+SL+ V D+ + D++ D P++ ++ MK +
Sbjct: 209 AEYIDVSEEEVKDLMLKASQPVSLEMKVGDKDDTVLLDLL-STDNDSPQQQIELDCMKGD 267
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQI 357
L+ LL+ L E + +LR+ +G+DG+ P+S IGR+L +SR+R+R +
Sbjct: 268 LEILLEKLPELQYRVLRMRYGIDGEEPMSLTGIGRVLGISRDRVRNL 314
>gi|308174309|ref|YP_003921014.1| RpoD [Bacillus amyloliquefaciens DSM 7]
gi|384160167|ref|YP_005542240.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens TA208]
gi|384165097|ref|YP_005546476.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens LL3]
gi|384169236|ref|YP_005550614.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens XH7]
gi|307607173|emb|CBI43544.1| RpoD [Bacillus amyloliquefaciens DSM 7]
gi|328554255|gb|AEB24747.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens TA208]
gi|328912652|gb|AEB64248.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens LL3]
gi|341828515|gb|AEK89766.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens XH7]
Length = 373
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 128 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYK 187
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 247
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 248 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 307
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 308 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 367
Query: 374 LKVYM 378
LK ++
Sbjct: 368 LKDFL 372
>gi|221310444|ref|ZP_03592291.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. 168]
gi|221314767|ref|ZP_03596572.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221319690|ref|ZP_03600984.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323967|ref|ZP_03605261.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. SMY]
gi|255767573|ref|NP_390399.2| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. 168]
gi|296333322|ref|ZP_06875775.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675173|ref|YP_003866845.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis
subsp. spizizenii str. W23]
gi|321312003|ref|YP_004204290.1| RNA polymerase sigma factor RpoD [Bacillus subtilis BSn5]
gi|350266721|ref|YP_004878028.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|384176143|ref|YP_005557528.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|386759117|ref|YP_006232333.1| RNA polymerase sigma factor RpoD [Bacillus sp. JS]
gi|398311463|ref|ZP_10514937.1| RNA polymerase sigma factor RpoD [Bacillus mojavensis RO-H-1]
gi|418032304|ref|ZP_12670787.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|430758721|ref|YP_007208938.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|443631815|ref|ZP_21115995.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|449095014|ref|YP_007427505.1| RNA polymerase sigma factor [Bacillus subtilis XF-1]
gi|452915616|ref|ZP_21964242.1| RNA polymerase sigma factor rpoD [Bacillus subtilis MB73/2]
gi|251757327|sp|P06224.2|RPOD_BACSU RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-43; AltName: Full=Sigma-A
gi|225185201|emb|CAB14450.2| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis
subsp. subtilis str. 168]
gi|296149520|gb|EFG90416.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413417|gb|ADM38536.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis
subsp. spizizenii str. W23]
gi|320018277|gb|ADV93263.1| RNA polymerase sigma factor RpoD [Bacillus subtilis BSn5]
gi|349595367|gb|AEP91554.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349599608|gb|AEP87396.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|351471167|gb|EHA31288.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|384932399|gb|AFI29077.1| RNA polymerase sigma factor RpoD [Bacillus sp. JS]
gi|407959766|dbj|BAM53006.1| RNA polymerase sigma factor RpoD [Bacillus subtilis BEST7613]
gi|407965341|dbj|BAM58580.1| RNA polymerase sigma factor RpoD [Bacillus subtilis BEST7003]
gi|430023241|gb|AGA23847.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|443347930|gb|ELS61987.1| RNA polymerase sigma factor RpoD [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|449028929|gb|AGE64168.1| RNA polymerase sigma factor [Bacillus subtilis XF-1]
gi|452115964|gb|EME06360.1| RNA polymerase sigma factor rpoD [Bacillus subtilis MB73/2]
Length = 371
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 126 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYK 185
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 186 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 245
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 246 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 305
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 306 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 365
Query: 374 LKVYM 378
LK ++
Sbjct: 366 LKDFL 370
>gi|387929762|ref|ZP_10132439.1| RNA polymerase sigma factor RpoD [Bacillus methanolicus PB1]
gi|387586580|gb|EIJ78904.1| RNA polymerase sigma factor RpoD [Bacillus methanolicus PB1]
Length = 375
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 130 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYK 189
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 190 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 249
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 250 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 309
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 310 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 369
Query: 374 LKVYM 378
LK ++
Sbjct: 370 LKDFL 374
>gi|422686027|ref|ZP_16744240.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4000]
gi|315029422|gb|EFT41354.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4000]
Length = 368
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 123 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 182
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 242
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 243 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLED 302
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 303 VLDTLTDREENVLRLRFGLDNGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 374 LKVYM 378
LK ++
Sbjct: 363 LKDFL 367
>gi|415885546|ref|ZP_11547474.1| RNA polymerase sigma factor RpoD [Bacillus methanolicus MGA3]
gi|387591215|gb|EIJ83534.1| RNA polymerase sigma factor RpoD [Bacillus methanolicus MGA3]
Length = 375
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 130 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYK 189
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 190 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 249
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 250 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 309
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 310 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 369
Query: 374 LKVYM 378
LK ++
Sbjct: 370 LKDFL 374
>gi|154686781|ref|YP_001421942.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens FZB42]
gi|375363053|ref|YP_005131092.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384266131|ref|YP_005421838.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385265518|ref|ZP_10043605.1| RNA polymerase sigma factor RpoD [Bacillus sp. 5B6]
gi|387899153|ref|YP_006329449.1| polymerase primary sigma factor [Bacillus amyloliquefaciens Y2]
gi|394992081|ref|ZP_10384874.1| RNA polymerase sigma factor RpoD [Bacillus sp. 916]
gi|421730962|ref|ZP_16170088.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429505928|ref|YP_007187112.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451346274|ref|YP_007444905.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens IT-45]
gi|452856284|ref|YP_007497967.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|154352632|gb|ABS74711.1| RpoD [Bacillus amyloliquefaciens FZB42]
gi|371569047|emb|CCF05897.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380499484|emb|CCG50522.1| RNA polymerase sigma factor rpoD [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385150014|gb|EIF13951.1| RNA polymerase sigma factor RpoD [Bacillus sp. 5B6]
gi|387173263|gb|AFJ62724.1| polymerase primary sigma factor [Bacillus amyloliquefaciens Y2]
gi|393807097|gb|EJD68423.1| RNA polymerase sigma factor RpoD [Bacillus sp. 916]
gi|407075116|gb|EKE48103.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429487518|gb|AFZ91442.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449850032|gb|AGF27024.1| RNA polymerase sigma factor RpoD [Bacillus amyloliquefaciens IT-45]
gi|452080544|emb|CCP22307.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 373
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 128 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYK 187
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 247
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 248 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 307
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 308 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 367
Query: 374 LKVYM 378
LK ++
Sbjct: 368 LKDFL 372
>gi|32474203|ref|NP_867197.1| transcription initiation factor sigma 70 [Rhodopirellula baltica SH
1]
gi|421612755|ref|ZP_16053854.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SH28]
gi|440716787|ref|ZP_20897291.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SWK14]
gi|32444741|emb|CAD74742.1| transcription initiation factor sigma 70 [Rhodopirellula baltica SH
1]
gi|408496428|gb|EKK00988.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SH28]
gi|436438284|gb|ELP31844.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
baltica SWK14]
Length = 567
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 141/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y+ +GLS DLIQEG+ GL+R ++ RG+K STY WWI+QAI RAIA+
Sbjct: 338 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGFKFSTYATWWIRQAITRAIAD 397
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M +++K+ +A L++ LRR PT +IAE ++ + VR ++ RHP+
Sbjct: 398 QARTIRIPVHMIDVLSKLRQAQKRLTQTLRREPTYEDIAEATDVPIEEVRRVMDIGRHPV 457
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + + + + + P R+ +++ ++ ELL+TL+ RE +I+RL +GL
Sbjct: 458 SLDRPVGEGEDSSFGEFVQDSETDNPVRIAASGMLRNKIDELLKTLTFREREIIRLRYGL 517
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ +E GR+ ++RER+RQI A+ K+Q + L Y+
Sbjct: 518 VDGYSYTLEECGRIFKVTRERVRQIEAKAVAKMQSPSRAERLSSYL 563
>gi|15606649|ref|NP_214029.1| RNA polymerase sigma factor RpoD [Aquifex aeolicus VF5]
gi|2983864|gb|AAC07417.1| RNA polymerase sigma factor RpoD [Aquifex aeolicus VF5]
Length = 575
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 147/227 (64%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++++ +I+S LVVSIA Y +GL DLIQEG+IGL++ +++ +GYK STY W
Sbjct: 337 QAKQVMIQSNLRLVVSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATW 396
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + KI +A+ L + R PT EIAE L+I V
Sbjct: 397 WIRQAITRAIADQARTIRIPVHMIETINKIIKASKKLFQENGREPTPEEIAEYLDIPVEK 456
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
V+ ++ ++ PISL+ + D ++D I PE V ++L++++L+++L TLSE
Sbjct: 457 VKKVMKFSQEPISLETPIGDDDDTFLKDFIEDKSIPNPEEQVTRKLLREQLQKVLSTLSE 516
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+E +IL +GL T + +++G++ +++RERIRQI AL KL+
Sbjct: 517 KEREILMYRYGLVDGTEYTLEQVGKMFNVTRERIRQIENKALRKLRH 563
>gi|398306978|ref|ZP_10510564.1| RNA polymerase sigma factor RpoD [Bacillus vallismortis DV1-F-3]
Length = 371
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 126 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYK 185
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 186 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 245
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 246 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 305
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 306 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 365
Query: 374 LKVYM 378
LK ++
Sbjct: 366 LKDFL 370
>gi|449134673|ref|ZP_21770143.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
europaea 6C]
gi|448886646|gb|EMB17047.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhodopirellula
europaea 6C]
Length = 567
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 141/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y+ +GLS DLIQEG+ GL+R ++ RG+K STY WWI+QAI RAIA+
Sbjct: 338 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGFKFSTYATWWIRQAITRAIAD 397
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M +++K+ +A L++ LRR PT +IAE ++ + VR ++ RHP+
Sbjct: 398 QARTIRIPVHMIDVLSKLRQAQKRLTQTLRREPTYEDIAEATDVPIEEVRRVMDIGRHPV 457
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + + + + + P R+ +++ ++ ELL+TL+ RE +I+RL +GL
Sbjct: 458 SLDRPVGEGEDSSFGEFVQDSETDNPVRIAASGMLRNKIDELLKTLTFREREIIRLRYGL 517
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ +E GR+ ++RER+RQI A+ K+Q + L Y+
Sbjct: 518 VDGYSYTLEECGRIFKVTRERVRQIEAKAVAKMQSPSRAERLSSYL 563
>gi|29376087|ref|NP_815241.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis V583]
gi|227518714|ref|ZP_03948763.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0104]
gi|227553323|ref|ZP_03983372.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis HH22]
gi|229545861|ref|ZP_04434586.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1322]
gi|229550053|ref|ZP_04438778.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 29200]
gi|255975889|ref|ZP_05426475.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T2]
gi|256619027|ref|ZP_05475873.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 4200]
gi|256762453|ref|ZP_05503033.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T3]
gi|256853088|ref|ZP_05558458.1| RNA polymerase sigma-43 factor [Enterococcus faecalis T8]
gi|256958944|ref|ZP_05563115.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DS5]
gi|256961963|ref|ZP_05566134.1| sigma 42 [Enterococcus faecalis Merz96]
gi|256965161|ref|ZP_05569332.1| sigma 42 [Enterococcus faecalis HIP11704]
gi|257078975|ref|ZP_05573336.1| sigma 42 [Enterococcus faecalis JH1]
gi|257082587|ref|ZP_05576948.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis E1Sol]
gi|257085220|ref|ZP_05579581.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis Fly1]
gi|257086781|ref|ZP_05581142.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis D6]
gi|257089848|ref|ZP_05584209.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis CH188]
gi|257416057|ref|ZP_05593051.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ARO1/DG]
gi|257419260|ref|ZP_05596254.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis T11]
gi|257422656|ref|ZP_05599646.1| RNA polymerase sigma-43 factor [Enterococcus faecalis X98]
gi|293383032|ref|ZP_06628950.1| RNA polymerase sigma-43 factor [Enterococcus faecalis R712]
gi|293389479|ref|ZP_06633936.1| RNA polymerase sigma-43 factor [Enterococcus faecalis S613]
gi|294779115|ref|ZP_06744526.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis PC1.1]
gi|300860473|ref|ZP_07106560.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TUSoD Ef11]
gi|307271055|ref|ZP_07552338.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4248]
gi|307273262|ref|ZP_07554508.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0855]
gi|307274998|ref|ZP_07556161.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2134]
gi|307278111|ref|ZP_07559195.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0860]
gi|307289068|ref|ZP_07569024.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0109]
gi|307292033|ref|ZP_07571902.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0411]
gi|312900723|ref|ZP_07760020.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0470]
gi|312903270|ref|ZP_07762450.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0635]
gi|312907497|ref|ZP_07766488.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DAPTO 512]
gi|312910115|ref|ZP_07768962.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DAPTO 516]
gi|312951455|ref|ZP_07770352.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0102]
gi|384513206|ref|YP_005708299.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis OG1RF]
gi|421512418|ref|ZP_15959225.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 29212]
gi|422689405|ref|ZP_16747517.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0630]
gi|422693062|ref|ZP_16751077.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0031]
gi|422694944|ref|ZP_16752932.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4244]
gi|422699260|ref|ZP_16757133.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1346]
gi|422701717|ref|ZP_16759557.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1342]
gi|422704436|ref|ZP_16762246.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1302]
gi|422706710|ref|ZP_16764408.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0043]
gi|422708433|ref|ZP_16765961.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0027]
gi|422714660|ref|ZP_16771386.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0309A]
gi|422715918|ref|ZP_16772634.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0309B]
gi|422718883|ref|ZP_16775534.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0017]
gi|422722558|ref|ZP_16779108.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2137]
gi|422727009|ref|ZP_16783452.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0312]
gi|422728944|ref|ZP_16785350.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0012]
gi|422733618|ref|ZP_16789920.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0645]
gi|422734351|ref|ZP_16790645.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1341]
gi|422739714|ref|ZP_16794887.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2141]
gi|422869407|ref|ZP_16915927.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1467]
gi|424673258|ref|ZP_18110201.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis 599]
gi|424676801|ref|ZP_18113672.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV103]
gi|424681381|ref|ZP_18118168.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV116]
gi|424683570|ref|ZP_18120320.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV129]
gi|424686525|ref|ZP_18123193.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV25]
gi|424690202|ref|ZP_18126737.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV31]
gi|424695296|ref|ZP_18131679.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV37]
gi|424696965|ref|ZP_18133306.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV41]
gi|424699649|ref|ZP_18135860.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV62]
gi|424703338|ref|ZP_18139472.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV63]
gi|424706029|ref|ZP_18142042.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV65]
gi|424717174|ref|ZP_18146472.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV68]
gi|424720753|ref|ZP_18149854.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV72]
gi|424724303|ref|ZP_18153252.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV73]
gi|424733890|ref|ZP_18162445.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV81]
gi|424743807|ref|ZP_18172112.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV85]
gi|424749506|ref|ZP_18177609.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV93]
gi|424761355|ref|ZP_18188937.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis R508]
gi|428766960|ref|YP_007153071.1| RNA polymerase sigma factor [Enterococcus faecalis str. Symbioflor
1]
gi|430360376|ref|ZP_19426223.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis OG1X]
gi|430368205|ref|ZP_19428077.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis M7]
gi|30179886|sp|P52329.2|RPOD_ENTFA RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-42
gi|29343549|gb|AAO81311.1| RNA polymerase sigma-43 factor [Enterococcus faecalis V583]
gi|227073834|gb|EEI11797.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0104]
gi|227177552|gb|EEI58524.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis HH22]
gi|229304757|gb|EEN70753.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 29200]
gi|229309016|gb|EEN75003.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1322]
gi|255968761|gb|EET99383.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T2]
gi|256598554|gb|EEU17730.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 4200]
gi|256683704|gb|EEU23399.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T3]
gi|256711547|gb|EEU26585.1| RNA polymerase sigma-43 factor [Enterococcus faecalis T8]
gi|256949440|gb|EEU66072.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DS5]
gi|256952459|gb|EEU69091.1| sigma 42 [Enterococcus faecalis Merz96]
gi|256955657|gb|EEU72289.1| sigma 42 [Enterococcus faecalis HIP11704]
gi|256987005|gb|EEU74307.1| sigma 42 [Enterococcus faecalis JH1]
gi|256990617|gb|EEU77919.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis E1Sol]
gi|256993250|gb|EEU80552.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis Fly1]
gi|256994811|gb|EEU82113.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis D6]
gi|256998660|gb|EEU85180.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis CH188]
gi|257157885|gb|EEU87845.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ARO1/DG]
gi|257161088|gb|EEU91048.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis T11]
gi|257164480|gb|EEU94440.1| RNA polymerase sigma-43 factor [Enterococcus faecalis X98]
gi|291079697|gb|EFE17061.1| RNA polymerase sigma-43 factor [Enterococcus faecalis R712]
gi|291081096|gb|EFE18059.1| RNA polymerase sigma-43 factor [Enterococcus faecalis S613]
gi|294453840|gb|EFG22231.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis PC1.1]
gi|295112959|emb|CBL31596.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Enterococcus sp. 7L76]
gi|300849512|gb|EFK77262.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TUSoD Ef11]
gi|306497031|gb|EFM66579.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0411]
gi|306499777|gb|EFM69138.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0109]
gi|306505508|gb|EFM74694.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0860]
gi|306508446|gb|EFM77553.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2134]
gi|306510247|gb|EFM79271.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0855]
gi|306512553|gb|EFM81202.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4248]
gi|310626525|gb|EFQ09808.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DAPTO 512]
gi|310630611|gb|EFQ13894.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0102]
gi|310633146|gb|EFQ16429.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0635]
gi|311289388|gb|EFQ67944.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis DAPTO 516]
gi|311292204|gb|EFQ70760.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0470]
gi|315027303|gb|EFT39235.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2137]
gi|315033932|gb|EFT45864.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0017]
gi|315036941|gb|EFT48873.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0027]
gi|315144454|gb|EFT88470.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX2141]
gi|315147227|gb|EFT91243.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX4244]
gi|315150574|gb|EFT94590.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0012]
gi|315152521|gb|EFT96537.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0031]
gi|315155799|gb|EFT99815.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0043]
gi|315158034|gb|EFU02051.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0312]
gi|315160483|gb|EFU04500.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0645]
gi|315163977|gb|EFU07994.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1302]
gi|315169073|gb|EFU13090.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1341]
gi|315169690|gb|EFU13707.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1342]
gi|315172348|gb|EFU16365.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1346]
gi|315575904|gb|EFU88095.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0309B]
gi|315577570|gb|EFU89761.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0630]
gi|315580556|gb|EFU92747.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX0309A]
gi|327535095|gb|AEA93929.1| RNA polymerase sigma factor rpoD [Enterococcus faecalis OG1RF]
gi|329571347|gb|EGG53034.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis TX1467]
gi|401674531|gb|EJS80882.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ATCC 29212]
gi|402351088|gb|EJU85980.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV116]
gi|402353068|gb|EJU87904.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis 599]
gi|402356421|gb|EJU91155.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV103]
gi|402364568|gb|EJU99003.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV129]
gi|402364889|gb|EJU99320.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV31]
gi|402367379|gb|EJV01720.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV25]
gi|402368473|gb|EJV02786.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV37]
gi|402375578|gb|EJV09558.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV62]
gi|402377294|gb|EJV11205.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV41]
gi|402385343|gb|EJV18883.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV63]
gi|402386522|gb|EJV20028.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV68]
gi|402388672|gb|EJV22100.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV65]
gi|402390900|gb|EJV24220.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV81]
gi|402393224|gb|EJV26454.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV72]
gi|402395444|gb|EJV28550.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV73]
gi|402399936|gb|EJV32790.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV85]
gi|402402339|gb|EJV35060.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis R508]
gi|402407757|gb|EJV40262.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis ERV93]
gi|427185133|emb|CCO72357.1| RNA polymerase sigma factor [Enterococcus faecalis str. Symbioflor
1]
gi|429512852|gb|ELA02447.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis OG1X]
gi|429516367|gb|ELA05859.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis M7]
Length = 368
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 123 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 182
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 242
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 243 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLED 302
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 303 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 374 LKVYM 378
LK ++
Sbjct: 363 LKDFL 367
>gi|402776782|ref|YP_006630726.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis
QB928]
gi|402481962|gb|AFQ58471.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis
QB928]
Length = 400
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 155 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYK 214
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 215 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 274
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 275 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 334
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 335 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 394
Query: 374 LKVYM 378
LK ++
Sbjct: 395 LKDFL 399
>gi|320161271|ref|YP_004174495.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319995124|dbj|BAJ63895.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 409
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 146/238 (61%), Gaps = 2/238 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I + LV+S+A Y G+G+ DLIQEG+IGL+R K+F+ RG+K STY WW
Sbjct: 171 AREHLITANSRLVISVAKKYMGRGVPFLDLIQEGNIGLIRATKKFDYRRGHKFSTYATWW 230
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QA+ RAIA++ RTIR+P M + K+ + L++RL R P+ E+AE L++ V
Sbjct: 231 IRQAVTRAIADQGRTIRVPVHMGDQINKLLRVQHQLTQRLGREPSVEELAEALDVPPRKV 290
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
I+ R P+SL+ D + D I + P+ L++Q L+E+L TL R
Sbjct: 291 ENMIQVARRPLSLETPTDDEEDSVLGDFIEDEEAPPPDDTATYNLLRQHLEEVLNTLPPR 350
Query: 322 EADILRLHFG-LDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E IL+L +G LDGQ + +E+GR + ++RER+RQI AL++L+ +I L+ Y+
Sbjct: 351 EVRILQLRYGLLDGQA-YTLEEVGRKMGVTRERVRQIEAQALSRLRHPSIRRKLRDYL 407
>gi|374290184|ref|YP_005037237.1| RNA polymerase sigma-70 factor [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
gi|358376976|gb|AEU09164.1| RNA polymerase sigma-70 factor [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
Length = 287
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 152/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
++++ + VVS+A YQ +GLSL DLI EG++GL++G RF+ RG+K +YV WWI+
Sbjct: 52 DKLVNANLRFVVSVAKQYQNQGLSLCDLINEGNLGLIKGILRFDETRGFKCISYVVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
QAI++AIA +SR+IR P + ++ KI + L + L+R P+ EIAE L ++ V
Sbjct: 112 QAILQAIAEQSRSIRQPTNKLALLNKILKTLAQLEQELQRTPSAREIAENLEMNEKEVEE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + IS+D + D + D++ + P+ ++K+ +++++K +L+TLSERE
Sbjct: 172 SLKNSGRHISMDAPLIDGEDSNLYDLVKSDESPRPDEHLEKESLRKDIKRILETLSERER 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++ LHFGL+G P++ +E+G L+RER+RQI IAL +L+ ++ LK Y+
Sbjct: 232 RVIILHFGLNGSPPMTLEEVGHSCDLTRERVRQIESIALKRLKHSSRSKILKPYL 286
>gi|384518554|ref|YP_005705859.1| RNA polymerase sigma factor rpoD (Sigma-42) [Enterococcus faecalis
62]
gi|397699845|ref|YP_006537633.1| RNA polymerase sigma factor rpoD (Sigma-42) [Enterococcus faecalis
D32]
gi|323480687|gb|ADX80126.1| RNA polymerase sigma factor rpoD (Sigma-42) [Enterococcus faecalis
62]
gi|397336484|gb|AFO44156.1| RNA polymerase sigma factor rpoD (Sigma-42) [Enterococcus faecalis
D32]
Length = 356
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 111 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 170
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 171 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 230
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 231 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLED 290
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 291 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 350
Query: 374 LKVYM 378
LK ++
Sbjct: 351 LKDFL 355
>gi|255972833|ref|ZP_05423419.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T1]
gi|255963851|gb|EET96327.1| RNA polymerase sigma factor RpoD [Enterococcus faecalis T1]
Length = 368
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 123 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 182
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 242
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 243 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLED 302
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 303 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 374 LKVYM 378
LK ++
Sbjct: 363 LKDFL 367
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 154/245 (62%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG+IGL R A++F+P +GYK S
Sbjct: 128 LYRGRSAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFS 187
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI R IAN +RTIRLP + + K+ +A VL ++L R PT+ E+A+ L
Sbjct: 188 TYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPTEKELAQALE 247
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ +R ++ R +SL+ V + D++ D +PE + + +M+Q++ +L
Sbjct: 248 VDAENLRQLLQLRRQSLSLNHRVGKGEDTELVDLLEDEDLQLPEEKMNEAMMRQDISAVL 307
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ERE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ + L
Sbjct: 308 TDVLTEREKDVIALRYGLSTSQPYTLEEVGGIFNLSRERVRQIQSKAMRKLRRPQVARRL 367
Query: 375 KVYMV 379
K +++
Sbjct: 368 KGWLI 372
>gi|769798|emb|CAA60113.1| sigma 42 [Enterococcus faecalis]
Length = 368
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 123 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 182
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRMQRNLLQDLGREPTPEEIGAE 242
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 243 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLED 302
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 303 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 374 LKVYM 378
LK ++
Sbjct: 363 LKDFL 367
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 147/226 (65%), Gaps = 1/226 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R++ + LVVS+A Y + + L DLIQEG+IG+ RG ++F+P +GY+ STY YWW
Sbjct: 83 AKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPLKGYRFSTYAYWW 142
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA KSRTIRLP + + KI +A LS++L R T +E+AE + + V
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQKLGRAATVAELAEEVKLTPKQV 202
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R +E++R P+SLD + D + D++ P ++ PE + L++++L L+ L+ +
Sbjct: 203 RDYLEKSRSPLSLDLRIGDNQDTNLGDLLEDPGQS-PEDYATQSLLRKDLDRLMAELTPQ 261
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ +L L FGLD ++ +IG +LS+SRER+RQI ALT+L++
Sbjct: 262 QQRVLHLRFGLDDGKNMTLAKIGEMLSISRERVRQIEREALTRLRK 307
>gi|409351170|ref|ZP_11233998.1| RNA polymerase sigma factor [Lactobacillus equicursoris CIP 110162]
gi|407876929|emb|CCK86056.1| RNA polymerase sigma factor [Lactobacillus equicursoris CIP 110162]
Length = 374
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 148/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G++ DLIQEG++GL++ +F+ GYK
Sbjct: 129 RIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGYK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EIA
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAE 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++I VR ++ ++ P+SL+ + + + D I D PE+ +++K++L E
Sbjct: 249 MDITTKKVREILKISQEPVSLETPIGEEDDSHLGDFIEDKDAMSPEQHAANEMLKEQLSE 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TLS READ+LRL FGLD + +E+G+ ++RERIRQI AL KL+ +
Sbjct: 309 VLRTLSAREADVLRLRFGLDDGKTRTLEEVGQHFDVTRERIRQIEAKALRKLRHPSRSGQ 368
Query: 374 LKVYM 378
L+ ++
Sbjct: 369 LRDFL 373
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 150/244 (61%), Gaps = 1/244 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 163 LHRSRVAKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRATEKFDPDKGYKFS 222
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+Q I R IAN SRTIRLP + + K+ A L R+L R PT++E+AE L
Sbjct: 223 TYAYWWIRQGITRTIANDSRTIRLPVHIVEKLNKLKGAQRDLKRKLNRNPTEAELAEALE 282
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ ++ + R +SL+ V + D++ + PE + + +++QE+ ++L
Sbjct: 283 VTPEQLQNLQQVHRRSLSLNYRVGKDEDTELVDLLEDAETRSPESQMSETMLRQEIWDVL 342
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ERE DI+ L +GL P + +E+G L +LSRER+RQI+ A+ KL++ + L
Sbjct: 343 GNVLTEREKDIISLRYGLSSNKPCTLEEVGGLFNLSRERVRQIQSKAMRKLRRPQVAERL 402
Query: 375 KVYM 378
K ++
Sbjct: 403 KGWL 406
>gi|373859068|ref|ZP_09601800.1| RNA polymerase sigma factor RpoD [Bacillus sp. 1NLA3E]
gi|372451159|gb|EHP24638.1| RNA polymerase sigma factor RpoD [Bacillus sp. 1NLA3E]
Length = 375
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 135 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYA 194
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE +++
Sbjct: 195 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTP 254
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T P +L+K++L+++L TL
Sbjct: 255 DKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTL 314
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 315 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
>gi|295424882|ref|ZP_06817597.1| RNA polymerase sigma factor rpoD [Lactobacillus amylolyticus DSM
11664]
gi|295065448|gb|EFG56341.1| RNA polymerase sigma factor rpoD [Lactobacillus amylolyticus DSM
11664]
Length = 368
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K
Sbjct: 123 RIENGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFK 182
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 242
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ + VR ++ + P+SL+ + + + D I + T PE+ +++K++L+E
Sbjct: 243 MDMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKEATSPEQHASYEMLKEQLEE 302
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ + N
Sbjct: 303 TLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSNQ 362
Query: 374 LKVYM 378
LK ++
Sbjct: 363 LKDFL 367
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 151/237 (63%), Gaps = 3/237 (1%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ ++I + LVV+IA YQ + + DLIQEGS+GL RG ++F+P +GYK STY YWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA ++RTIRLP + + KI + LS++L R T +EIA +L I S +
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAVLEIEPSQI 211
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R PISLD V D + +++ E P++ + ++L++Q+LK L++ L+ +
Sbjct: 212 RECLSMARQPISLDVRVGDNQDTELSELLED-HEASPDQYITQELLRQDLKNLMEELTPQ 270
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ +L L FGL+ +S +IG+ L++SRER+RQ+ AL +L++ N+K Y+
Sbjct: 271 QRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLRRRRA--NVKEYL 325
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 148/240 (61%), Gaps = 3/240 (1%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 84 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 143
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R P+ +E+A + +
Sbjct: 144 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPED 203
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + D++ G D +P V+ + +K +L++LL L
Sbjct: 204 EVKELMCRARQPVSLEMKVGDGDDTELLDLLAG-DGELPSEQVEGECLKGDLRDLLGQLP 262
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYMV 379
E + +LR+ +G+DG+ P+S I + L +SR+R R++ L L+Q + L+ Y V
Sbjct: 263 ELQERVLRMRYGMDGEEPMSLTGIAKTLKMSRDRTRRLEREGLQSLRQAPL--ELRDYTV 320
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 150/244 (61%), Gaps = 1/244 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L K R ++ ++IRS LVVSIA Y +G+ DLIQEG+IGL R A++F+P +GYK S
Sbjct: 119 LYKGRTAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFS 178
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI R IAN SRTIRLP + + K+ +A +L + L+R PT+ E+AE +
Sbjct: 179 TYAYWWIRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRILKQDLQRQPTEKELAEEMG 238
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I + ++ R +SL+ V + +++ + +PE + + +M QE+ +L
Sbjct: 239 ITRQALHQLLQLKRQSLSLNHRVGKGEDTELMELLEDTNLLLPEDKMNEAMMHQEIVSVL 298
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
LSERE +++ L +GL + +E+G++ LSRER+RQI+ A+ KL++ + L
Sbjct: 299 SDVLSEREKEVIVLRYGLASSKAHTLEEVGKIFDLSRERVRQIQTKAMRKLRRPQVARRL 358
Query: 375 KVYM 378
K ++
Sbjct: 359 KGWL 362
>gi|408411646|ref|ZP_11182784.1| RNA polymerase sigma factor [Lactobacillus sp. 66c]
gi|407874194|emb|CCK84590.1| RNA polymerase sigma factor [Lactobacillus sp. 66c]
Length = 374
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 148/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G++ DLIQEG++GL++ +F+ GYK
Sbjct: 129 RIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGYK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EIA
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAE 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++I VR ++ ++ P+SL+ + + + D I D PE+ +++K++L E
Sbjct: 249 MDITTKKVREILKISQEPVSLETPIGEEDDSHLGDFIEDKDAMSPEQHAANEMLKEQLSE 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TLS READ+LRL FGLD + +E+G+ ++RERIRQI AL KL+ +
Sbjct: 309 VLRTLSAREADVLRLRFGLDDGKTRTLEEVGQHFDVTRERIRQIEAKALRKLRHPSRSGQ 368
Query: 374 LKVYM 378
L+ ++
Sbjct: 369 LRDFL 373
>gi|363890577|ref|ZP_09317904.1| hypothetical protein HMPREF9628_00551 [Eubacteriaceae bacterium
CM5]
gi|361964953|gb|EHL17953.1| hypothetical protein HMPREF9628_00551 [Eubacteriaceae bacterium
CM5]
Length = 432
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 142/234 (60%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
+I+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+Q
Sbjct: 198 KIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQ 257
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLA 264
AI RAIA+++RTIR+P M + K+ N L + L R P EIAE +N+ +
Sbjct: 258 AITRAIADQARTIRIPVHMVETINKLIRVNRQLVQELGRDPRPDEIAEQMNMPQEKIMEI 317
Query: 265 IERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREAD 324
++ + P+SL+ + + + D IP D P L+K++++E+L+TL++RE
Sbjct: 318 MKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSLLKEQIEEVLETLTDREKK 377
Query: 325 ILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+L+L FGLD + +E+G+ ++RERIRQI AL KL+ N LK Y+
Sbjct: 378 VLKLRFGLDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRGPKKSNKLKDYL 431
>gi|289578595|ref|YP_003477222.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermoanaerobacter
italicus Ab9]
gi|289528308|gb|ADD02660.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter italicus Ab9]
Length = 273
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 148/241 (61%), Gaps = 1/241 (0%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R I S LVVSIA GY GKG+S DLIQEG++GLL+ +RF+ +GYK STY
Sbjct: 33 DEEAKKRFIESNLRLVVSIAKGYVGKGISFPDLIQEGNLGLLKAVERFDYRKGYKFSTYA 92
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWIKQ I RAIA+++RTIR+P M V K+ + ++L R P+ EIAE +NI
Sbjct: 93 TWWIKQTITRAIADQARTIRIPVHMVESVNKLLKIQKQFLQKLGREPSIEEIAEEMNISE 152
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
++ +E + +SL+ V + + DII + P ++ L+K+++ E+L TL
Sbjct: 153 KKAKVLLEIVQGIVSLEEPVGEDENGKLGDIIADKEAVDPVEELESMLLKEQVDEVLSTL 212
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLL-SLSRERIRQIRGIALTKLQQTNILNNLKVY 377
+ RE +LRL FGLD + +E+G+ L +SRER+RQI AL +L+ N LK +
Sbjct: 213 APREEKVLRLRFGLDDGKIRTLEEVGKELGGISRERVRQIETKALKRLRHPNRSRRLKEF 272
Query: 378 M 378
+
Sbjct: 273 L 273
>gi|319651585|ref|ZP_08005712.1| RNA polymerase sigma factor [Bacillus sp. 2_A_57_CT2]
gi|317396652|gb|EFV77363.1| RNA polymerase sigma factor [Bacillus sp. 2_A_57_CT2]
Length = 374
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 134 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYA 193
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE +++
Sbjct: 194 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEDMDLTP 253
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T P +L+K++L+++L TL
Sbjct: 254 DKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLEDVLDTL 313
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 314 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 151/237 (63%), Gaps = 3/237 (1%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ ++I + LVV+IA YQ + + DLIQEGS+GL RG ++F+P +GYK STY YWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA ++RTIRLP + + KI + LS++L R T +EIA +L I S +
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAAVLEIEPSQI 211
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R PISLD V D + +++ E P++ + ++L++Q+LK L++ L+ +
Sbjct: 212 RECLSMARQPISLDVRVGDNQDTELSELLED-HEASPDQYITQELLRQDLKNLMEELTPQ 270
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ +L L FGL+ +S +IG+ L++SRER+RQ+ AL +L++ N+K Y+
Sbjct: 271 QRSVLILRFGLEDGKELSLAKIGKKLNISRERVRQLEHQALAQLRRRRA--NVKEYL 325
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/240 (39%), Positives = 148/240 (61%), Gaps = 3/240 (1%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 84 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 143
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R P+ +E+A + +
Sbjct: 144 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQDLGRTPSVTELAAFVELPED 203
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + D++ G D +P V+ + +K +L++LL L
Sbjct: 204 EVKELMCRARQPVSLEMKVGDGDDTELLDLLAG-DGELPSEQVEGECLKGDLRDLLGQLP 262
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYMV 379
E + +LR+ +G+DG+ P+S I + L +SR+R R++ L L+Q + L+ Y V
Sbjct: 263 ELQERVLRMRYGMDGEDPMSLTGIAKTLKMSRDRTRRLEREGLESLRQAPL--ELRDYTV 320
>gi|363893636|ref|ZP_09320731.1| hypothetical protein HMPREF9629_01057 [Eubacteriaceae bacterium
ACC19a]
gi|361963438|gb|EHL16510.1| hypothetical protein HMPREF9629_01057 [Eubacteriaceae bacterium
ACC19a]
Length = 432
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 142/234 (60%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
+I+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+Q
Sbjct: 198 KIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQ 257
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLA 264
AI RAIA+++RTIR+P M + K+ N L + L R P EIAE +N+ +
Sbjct: 258 AITRAIADQARTIRIPVHMVETINKLIRVNRQLVQELGRDPRPDEIAEQMNMPQEKIMEI 317
Query: 265 IERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREAD 324
++ + P+SL+ + + + D IP D P L+K++++E+L+TL++RE
Sbjct: 318 MKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSLLKEQIEEVLETLTDREKK 377
Query: 325 ILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+L+L FGLD + +E+G+ ++RERIRQI AL KL+ N LK Y+
Sbjct: 378 VLKLRFGLDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRGPKKSNKLKDYL 431
>gi|344204439|ref|YP_004789582.1| RpoD subfamily RNA polymerase sigma-70 subunit [Muricauda
ruestringensis DSM 13258]
gi|343956361|gb|AEM72160.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Muricauda
ruestringensis DSM 13258]
Length = 287
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 151/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++ + E++ + VVS+A YQ +GL L DLI EG++GL++ AKRF+ RG+K
Sbjct: 42 KIRAGDQAALEKLTNANLRFVVSVAKQYQNQGLKLPDLINEGNVGLVKAAKRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + + L + R P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRVVRLPLNKIGSINKIKKTFSYLEQAHERPPSPEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ VS V+ +++ T +S+D + + + D++ D P++ + Q + E+
Sbjct: 162 LDMTVSEVKQSLKNTGRHVSMDAPLKEGETSNLYDVLNAGDSPKPDKGLMHQSLNTEINR 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLS READ++RL++G+ Q ++ +EIG L+RER+RQIR A+ KL+ T+
Sbjct: 222 ALDTLSPREADVVRLYYGIGNQPSMTLEEIGSTFDLTRERVRQIREKAIRKLRHTSKSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKSYL 286
>gi|15639484|ref|NP_218934.1| RNA polymerase sigma factor RpoD [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025724|ref|YP_001933496.1| RNA polymerase sigma factor RpoD [Treponema pallidum subsp.
pallidum SS14]
gi|378972999|ref|YP_005221603.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|378974066|ref|YP_005222672.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|378975127|ref|YP_005223735.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pallidum DAL-1]
gi|378981975|ref|YP_005230280.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. CDC2]
gi|408502366|ref|YP_006869810.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pallidum str. Mexico A]
gi|6094131|sp|O83506.1|RPOD_TREPA RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A;
AltName: Full=Major vegetative sigma factor
gi|3322782|gb|AAC65480.1| RNA polymerase sigma-70 factor (rpoD) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189018299|gb|ACD70917.1| RNA polymerase sigma-70 factor [Treponema pallidum subsp. pallidum
SS14]
gi|374677322|gb|AEZ57615.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. SamoaD]
gi|374678392|gb|AEZ58684.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. CDC2]
gi|374679461|gb|AEZ59752.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pertenue str. Gauthier]
gi|374680525|gb|AEZ60815.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pallidum DAL-1]
gi|408475729|gb|AFU66494.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema pallidum
subsp. pallidum str. Mexico A]
Length = 611
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 157/270 (58%)
Query: 109 RKKRTKESDFLDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSL 168
R+ R E DF + +G L ++ +++++++I + LVVSIA Y +GL
Sbjct: 340 RRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLF 399
Query: 169 KDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVA 228
DL+QEG+IGL++ ++F +GYK STY WWI+QAI R+I++++RTIR+P M +
Sbjct: 400 FDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQIN 459
Query: 229 KIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQD 288
K+ + L ++ R P+D EIA+ L V V+ R PISL+ + + ++ D
Sbjct: 460 KVTRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGD 519
Query: 289 IIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLS 348
+P D P R+ ++ L+K+E++ +L L RE ++LR+ FGLDG + +E+G
Sbjct: 520 FVPDADVENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFD 579
Query: 349 LSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RERIRQI AL +L+ LK ++
Sbjct: 580 VTRERIRQIEAKALKRLRHPRHSRRLKDFL 609
>gi|384422005|ref|YP_005631364.1| RNA polymerase sigma factor RpoD [Treponema pallidum subsp.
pallidum str. Chicago]
gi|291059871|gb|ADD72606.1| RNA polymerase sigma factor RpoD [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 610
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 157/270 (58%)
Query: 109 RKKRTKESDFLDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSL 168
R+ R E DF + +G L ++ +++++++I + LVVSIA Y +GL
Sbjct: 339 RRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLF 398
Query: 169 KDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVA 228
DL+QEG+IGL++ ++F +GYK STY WWI+QAI R+I++++RTIR+P M +
Sbjct: 399 FDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQIN 458
Query: 229 KIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQD 288
K+ + L ++ R P+D EIA+ L V V+ R PISL+ + + ++ D
Sbjct: 459 KVTRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGD 518
Query: 289 IIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLS 348
+P D P R+ ++ L+K+E++ +L L RE ++LR+ FGLDG + +E+G
Sbjct: 519 FVPDADVENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFD 578
Query: 349 LSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RERIRQI AL +L+ LK ++
Sbjct: 579 VTRERIRQIEAKALKRLRHPRHSRRLKDFL 608
>gi|338706454|ref|YP_004673222.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema
paraluiscuniculi Cuniculi A]
gi|335344515|gb|AEH40431.1| DNA-directed RNA polymerase sigma subunit RpoD [Treponema
paraluiscuniculi Cuniculi A]
Length = 611
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 157/270 (58%)
Query: 109 RKKRTKESDFLDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSL 168
R+ R E DF + +G L ++ +++++++I + LVVSIA Y +GL
Sbjct: 340 RRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLF 399
Query: 169 KDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVA 228
DL+QEG+IGL++ ++F +GYK STY WWI+QAI R+I++++RTIR+P M +
Sbjct: 400 FDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQIN 459
Query: 229 KIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQD 288
K+ + L ++ R P+D EIA+ L V V+ R PISL+ + + ++ D
Sbjct: 460 KVTRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGD 519
Query: 289 IIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLS 348
+P D P R+ ++ L+K+E++ +L L RE ++LR+ FGLDG + +E+G
Sbjct: 520 FVPDADVENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFD 579
Query: 349 LSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RERIRQI AL +L+ LK ++
Sbjct: 580 VTRERIRQIEAKALKRLRHPRHSRRLKDFL 609
>gi|302389497|ref|YP_003825318.1| RNA polymerase sigma-70 subunit RpoD [Thermosediminibacter oceani
DSM 16646]
gi|302200125|gb|ADL07695.1| RNA polymerase, sigma 70 subunit, RpoD [Thermosediminibacter oceani
DSM 16646]
Length = 367
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 150/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 127 DKEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 186
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIAE + + V
Sbjct: 187 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGRDPTPEEIAEEMELPV 246
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D IP + P +L++++L+++L+TL
Sbjct: 247 EKVREIMKIAQEPVSLETPIGEEEDSHLGDFIPDEEAQAPADAAAYRLLREQLEDVLETL 306
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE +LRL FGLD P + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 307 TPREEKVLRLRFGLDDGKPRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 366
>gi|260886856|ref|ZP_05898119.1| RNA polymerase sigma factor RpoD [Selenomonas sputigena ATCC 35185]
gi|330839344|ref|YP_004413924.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Selenomonas
sputigena ATCC 35185]
gi|260863455|gb|EEX77955.1| RNA polymerase sigma factor RpoD [Selenomonas sputigena ATCC 35185]
gi|329747108|gb|AEC00465.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Selenomonas
sputigena ATCC 35185]
Length = 375
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 146/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+Q+ + + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 135 DEEAQKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYA 194
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L ++L R P+ EIAE + I V
Sbjct: 195 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPSPEEIAEAMEISV 254
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P L+K++L+E+L TL
Sbjct: 255 ERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLDTL 314
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 315 TEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLKDFL 374
>gi|409196256|ref|ZP_11224919.1| sigma-70 family RNA polymerase sigma factor [Marinilabilia
salmonicolor JCM 21150]
Length = 289
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/216 (39%), Positives = 141/216 (65%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
VVS+A YQ +GLSL DLI EG++GL++ A+RF+ RG+K +Y WWI+Q+I++A+A
Sbjct: 61 FVVSVAKQYQNQGLSLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAE 120
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++R +RLP + G V K+ + L + +R PT EI ++L + V+ A++ + I
Sbjct: 121 QARIVRLPLNKIGSVNKVNNTFSRLEQEFQREPTPEEIGDILEMAPKDVKEALKVSNRHI 180
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
S+D + T+ D++ D P+ + +K+E++ L TLS READI++L++GL
Sbjct: 181 SMDAPLKPDEENTLYDVLLASDSVSPDAELLDNSLKKEIERSLSTLSSREADIIKLYYGL 240
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
+G+ P S +EIG+L +L+RER+RQI+ A+ +L+ T
Sbjct: 241 NGEPPYSLEEIGKLFNLTRERVRQIKEKAIKRLKHT 276
>gi|221632805|ref|YP_002522027.1| sigma factor MysA [Thermomicrobium roseum DSM 5159]
gi|221156346|gb|ACM05473.1| sigma factor MysA [Thermomicrobium roseum DSM 5159]
Length = 369
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 151/247 (61%), Gaps = 4/247 (1%)
Query: 136 LCKERESQER----IIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
L ++E ER +I++ LVVS+A Y G+GLS DLIQEG+IGL++ ++F+ +RG
Sbjct: 122 LVADKEDGERARAHLIQANLRLVVSVAKKYVGRGLSFLDLIQEGNIGLMKATEKFDYKRG 181
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
YK STY WWI+QAI RAI+++SRTIRLP + + +I + ++ L + L R PT E+A
Sbjct: 182 YKFSTYATWWIRQAITRAISDQSRTIRLPVHVGETINRIKKISHRLQQILEREPTQLEVA 241
Query: 252 EMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQEL 311
L++ +R +E R P+SL+ + G + D I + P + +QL++Q+L
Sbjct: 242 RALDMPEEKIRQILEAARLPVSLEAPIGQDGDAFLGDFIEDETQPAPLEIASQQLLRQQL 301
Query: 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
+E L L+ERE I+ L +GL+ + +E+GR ++RERIRQI AL KL+ +
Sbjct: 302 EEALSRLTERERRIIILRYGLEDGQFRTLEEVGREFGITRERIRQIEAKALRKLRHPSCS 361
Query: 372 NNLKVYM 378
L+ Y+
Sbjct: 362 RFLRGYL 368
>gi|402832995|ref|ZP_10881618.1| RNA polymerase sigma factor RpoD [Selenomonas sp. CM52]
gi|402281738|gb|EJU30364.1| RNA polymerase sigma factor RpoD [Selenomonas sp. CM52]
Length = 375
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 146/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+Q+ + + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 135 DEEAQKELAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYA 194
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L ++L R P+ EIAE + I V
Sbjct: 195 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQQLGREPSPEEIAEAMEISV 254
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P L+K++L+E+L TL
Sbjct: 255 ERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLDTL 314
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 315 TEREERVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSRKLKDFL 374
>gi|444335400|ref|YP_007391769.1| RNA polymerase primary sigma factor [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
gi|444299779|gb|AGD98016.1| RNA polymerase primary sigma factor [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
Length = 287
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 154/235 (65%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E+++ + VVS+A YQ +GLSL DLI EG++GL++G RF+ RG+K +YV WWI+
Sbjct: 52 EKLVNANLRFVVSVAKQYQNQGLSLCDLINEGNLGLIKGILRFDETRGFKCISYVVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
QAI++AIA +SR+IR P + ++ KI + L + L+R P+ EIAE L+++ V
Sbjct: 112 QAILQAIAEQSRSIRQPTNKLALLNKILKTLAQLEQELQRTPSAREIAEHLDMNEKDVEE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+I+ + +S+D + + + D++ + P+ ++++ +++++K +L+TLSERE
Sbjct: 172 SIKNSGRHVSMDAPLIEGEDSNLYDLVRSDESPRPDEYLERESLRKDIKRILETLSERER 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++ LHFGL+G P++ +E+G+ L+RER+RQI IAL +L+ ++ LK Y+
Sbjct: 232 RVIILHFGLNGSPPMTLEEVGQSCDLTRERVRQIESIALKRLKHSSRSKILKPYL 286
>gi|404421205|ref|ZP_11002928.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659218|gb|EJZ13874.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 481
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 154/248 (62%), Gaps = 3/248 (1%)
Query: 133 YKILCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
Y+ +C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +G
Sbjct: 234 YQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 293
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
YK STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A
Sbjct: 294 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 353
Query: 252 EMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQEL 311
+ ++I V + R PISLD + D G + D I + + V L++ +L
Sbjct: 354 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 413
Query: 312 KELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
+ +L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 414 QSVLETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSR 472
Query: 371 LNNLKVYM 378
L+ Y+
Sbjct: 473 SQVLRDYL 480
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 157/241 (65%), Gaps = 5/241 (2%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+ ++ ++I + LVV+IA YQ + + DLIQEGS+GL RG ++F+P +GYK STY Y
Sbjct: 90 KRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAY 149
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA ++RTIRLP + + KI + LS++L R T SEIA+ L++
Sbjct: 150 WWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSATPSEIAKALDLEPD 209
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELKELLQTL 318
+R + +R PISLD V D + +++ DE + P+ + ++LM+Q+L++LL L
Sbjct: 210 QIREFLSMSRQPISLDVRVGDNQDTELSELL--EDEGISPDNYITQELMRQDLQDLLAEL 267
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ ++ ++L L FGL +S +IG+ +++SRER+RQ+ AL++L++ +N+K Y+
Sbjct: 268 TPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQALSQLRRRR--SNVKEYI 325
Query: 379 V 379
V
Sbjct: 326 V 326
>gi|261749591|ref|YP_003257277.1| RNA polymerase sigma factor rpoD [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497684|gb|ACX84134.1| RNA polymerase sigma factor rpoD [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 287
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 154/235 (65%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E+++ + VVS+A YQ +GLSL DLI EG++GL++G RF+ RG+K +YV WWI+
Sbjct: 52 EKLVNANLRFVVSVAKQYQNQGLSLCDLINEGNLGLIKGILRFDETRGFKCISYVVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
QAI++AIA +SR+IR P + ++ KI + L + L+R P+ EIAE L+++ V
Sbjct: 112 QAILQAIAEQSRSIRQPTNKLALLNKILKTLAQLEQELQRTPSAREIAEHLDMNEKDVEE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+I+ + +S+D + + + D++ + P+ ++++ +++++K +L+TLSERE
Sbjct: 172 SIKNSGRHVSMDAPLIEGEDSNLYDLVRSDESPRPDEHLERESLRKDIKRILETLSERER 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++ LHFGL+G P++ +E+G+ L+RER+RQI IAL +L+ ++ LK Y+
Sbjct: 232 RVIILHFGLNGSPPMTLEEVGQSCDLTRERVRQIESIALKRLKHSSRSKILKPYL 286
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 156/254 (61%), Gaps = 4/254 (1%)
Query: 126 LDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKR 185
L +++K ++ +R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++
Sbjct: 83 LSTSIIKKRLRAGQR-AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 141
Query: 186 FNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMP 245
F+P RGYK STY YWWI+Q I RAIA KSR IRLP + M+ K+ + LS+ + R P
Sbjct: 142 FDPARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTP 201
Query: 246 TDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQ 305
T SE+A+ + + V+ + + P+SL+ V D + D++ G E +P+ ++
Sbjct: 202 TVSELAKYVELPEDDVKDLMCKAGQPVSLETKVGDGEDTVLLDLLAGG-EDLPDEQIEMD 260
Query: 306 LMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
M+ +L LL L + + +LR+ +G+DG P+S IGR+L +SR+R+R + L L
Sbjct: 261 CMRGDLHSLLHQLPDLQCRVLRMRYGMDGDEPMSLTGIGRVLGISRDRVRNLERDGLRGL 320
Query: 366 QQTNILNNLKVYMV 379
++ + +N++ Y V
Sbjct: 321 RRLS--DNVEAYFV 332
>gi|220907004|ref|YP_002482315.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7425]
gi|219863615|gb|ACL43954.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 327
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 142/224 (63%), Gaps = 1/224 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++I + LVVS+A YQ + L L DLIQEG++GL RG ++F+P RGYK STY YWW
Sbjct: 92 AKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA ++RT+RLP + + KI +A VLS+RL R T +EIA+ L + S +
Sbjct: 152 IRQAITRAIAQQARTVRLPIHITEKLNKIKKAQRVLSQRLGRSATPAEIAQELELEPSQI 211
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R P+SLD V D ++D++ D PE+ + ++ ++ LL L+ +
Sbjct: 212 REYLTLARQPVSLDLRVGDNQDTELRDLLED-DSPSPEQYTTGEALRDDVNHLLAELTPQ 270
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
+ ++L L FGL+ +S ++G LSLSRER+RQ+ AL L
Sbjct: 271 QREVLTLRFGLEDGKELSLAKVGEQLSLSRERVRQLERQALDHL 314
>gi|297617785|ref|YP_003702944.1| RpoD subfamily RNA polymerase sigma-70 subunit [Syntrophothermus
lipocalidus DSM 12680]
gi|297145622|gb|ADI02379.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Syntrophothermus
lipocalidus DSM 12680]
Length = 361
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + +++ +++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 116 RIENGDEDAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLMKAVEKFDYRKGYK 175
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K++ L ++L R PT +E+AE
Sbjct: 176 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLSRIQRALLQKLGREPTPAEVAEE 235
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++I V V ++ + P+SL+ + + + D I D PE L+++ L
Sbjct: 236 MDIPVERVMEIMKVAQEPVSLETPIGEEDDSHLGDFITDEDAESPEESASFVLLREHLDG 295
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE +LRL FGLD P + +E+G+ ++RERIRQI AL KL+ +
Sbjct: 296 ILSTLTDREEKVLRLRFGLDDGRPRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKK 355
Query: 374 LKVYM 378
LK Y+
Sbjct: 356 LKDYI 360
>gi|410456772|ref|ZP_11310628.1| RNA polymerase sigma factor RpoD [Bacillus bataviensis LMG 21833]
gi|409927529|gb|EKN64662.1| RNA polymerase sigma factor RpoD [Bacillus bataviensis LMG 21833]
Length = 377
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 132 RIEAGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFK 191
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI E
Sbjct: 192 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGED 251
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 252 MDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLED 311
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 312 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 371
Query: 374 LKVYM 378
LK ++
Sbjct: 372 LKDFL 376
>gi|262340892|ref|YP_003283747.1| RNA polymerase sigma-70 factor [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272229|gb|ACY40137.1| RNA polymerase sigma-70 factor [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 287
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 154/235 (65%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
++++ + VVS+A YQ +GLSL DLI EG++GL++G RF+ RG+K +YV WWI+
Sbjct: 52 DKLVNANLRFVVSVAKQYQNQGLSLCDLINEGNLGLIKGILRFDETRGFKCISYVVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
QAI++AIA +SR+IR P + ++ KI + L + L+R P+ EIAE L+++ V
Sbjct: 112 QAILQAIAEQSRSIRQPTNKLALLNKILKTLAQLEQELQRTPSAREIAEYLDMNEKDVEE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+I+ + +S+D + + + D++ + P+ ++K+ +++++K +L+TLSERE
Sbjct: 172 SIKNSGRHVSMDAPLIEGEDSNLYDLVRSDESPRPDEHLEKESLRKDIKRILETLSERER 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++ LHFGL+G P++ +E+G+ L+RER+RQI IAL +L+ ++ LK Y+
Sbjct: 232 RVIILHFGLNGSPPMTLEEVGQSCDLTRERVRQIESIALKRLKHSSRSKILKPYL 286
>gi|158335266|ref|YP_001516438.1| RNA polymerase sigma factor SigC [Acaryochloris marina MBIC11017]
gi|158305507|gb|ABW27124.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 423
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 157/257 (61%), Gaps = 9/257 (3%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N ELD +VK I KE +I++ LVVS+A YQ +GL L DLIQEG++GL R
Sbjct: 171 NAELD-QIVKQGIKAKEH-----MIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERA 224
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
++F+P +GY+ STY YWWI+Q I RAIA +SRTIRLP + + KI +A LS+
Sbjct: 225 VEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQSKG 284
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R + +IA+ +++ +R + R +SL+ V + D++ D+ PE ++
Sbjct: 285 RTASIEDIAQEMDMTPEQIRELLVRVPRSVSLEIKVGKDKDTELGDLLE-TDDISPEELI 343
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIA 361
++ ++QELK+LL L+ RE D++ + FGL DG+T S +IG+ L LSRER+RQI A
Sbjct: 344 MRESLQQELKQLLADLTPRERDVITMRFGLNDGKTH-SLAQIGKSLDLSRERVRQIESKA 402
Query: 362 LTKLQQTNILNNLKVYM 378
L KL+Q N ++ ++
Sbjct: 403 LQKLRQPKRRNRIRDFL 419
>gi|138896056|ref|YP_001126509.1| RNA polymerase sigma factor RpoD [Geobacillus thermodenitrificans
NG80-2]
gi|196248949|ref|ZP_03147649.1| RNA polymerase, sigma 70 subunit, RpoD family [Geobacillus sp.
G11MC16]
gi|134267569|gb|ABO67764.1| RNA polymerase sigma factor RpoD [Geobacillus thermodenitrificans
NG80-2]
gi|196211825|gb|EDY06584.1| RNA polymerase, sigma 70 subunit, RpoD family [Geobacillus sp.
G11MC16]
Length = 375
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 130 RIEQGDEEAKRRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYK 189
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 190 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEE 249
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 250 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLED 309
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 310 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 369
Query: 374 LKVYM 378
LK ++
Sbjct: 370 LKDFL 374
>gi|260890619|ref|ZP_05901882.1| RNA polymerase sigma factor RpoD [Leptotrichia hofstadii F0254]
gi|260859664|gb|EEX74164.1| RNA polymerase sigma factor RpoD [Leptotrichia hofstadii F0254]
Length = 392
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 154/253 (60%), Gaps = 3/253 (1%)
Query: 125 ELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
E+DY ++L E E+++++I S LVVSIA + +GL + DLIQEG++GL++ +
Sbjct: 141 EIDY---AQRVLNGEEEAKQKLIESNLRLVVSIAKKHTNRGLKMLDLIQEGNMGLMKAVE 197
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F E+G+K STY WWI+QAI RAIA++ RTIR+P M + KI + + ++ + +
Sbjct: 198 KFEYEKGFKFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGKE 257
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT E+AE L + V V+ +E + PISL+ V + D + P +
Sbjct: 258 PTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFANPYDATTR 317
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
L+K++L E+L+TL+ERE +LR +GLD + + +E+G++ +++RERIRQI AL K
Sbjct: 318 VLLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKALRK 377
Query: 365 LQQTNILNNLKVY 377
L+ + L+ Y
Sbjct: 378 LRHPSRRKKLEDY 390
>gi|157414236|ref|YP_001485102.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388811|gb|ABV51516.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 344
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 156/254 (61%), Gaps = 4/254 (1%)
Query: 126 LDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKR 185
L +++K ++ +R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++
Sbjct: 94 LSTSIIKKRLRAGQR-AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 152
Query: 186 FNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMP 245
F+P RGYK STY YWWI+Q I RAIA KSR IRLP + M+ K+ + LS+ + R P
Sbjct: 153 FDPARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTP 212
Query: 246 TDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQ 305
T SE+A+ + + V+ + + P+SL+ V D + D++ G E +P+ ++
Sbjct: 213 TVSELAKYVELPEDDVKDLMCKAGQPVSLETKVGDGEDTVLLDLLAGG-EDLPDEQIEMD 271
Query: 306 LMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
M+ +L LL L + + +LR+ +G+DG P+S IGR+L +SR+R+R + L L
Sbjct: 272 CMRGDLHSLLHQLPDLQCRVLRMRYGMDGDEPMSLTGIGRVLGISRDRVRNLERDGLRGL 331
Query: 366 QQTNILNNLKVYMV 379
++ + +N++ Y V
Sbjct: 332 RRLS--DNVEAYFV 343
>gi|257869538|ref|ZP_05649191.1| RNA polymerase sigma-43 factor [Enterococcus gallinarum EG2]
gi|357050733|ref|ZP_09111930.1| RNA polymerase sigma factor rpoD [Enterococcus saccharolyticus
30_1]
gi|257803702|gb|EEV32524.1| RNA polymerase sigma-43 factor [Enterococcus gallinarum EG2]
gi|355380885|gb|EHG28017.1| RNA polymerase sigma factor rpoD [Enterococcus saccharolyticus
30_1]
Length = 368
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 123 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 182
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 242
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 243 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLED 302
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FG+D + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 303 VLDTLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 374 LKVYM 378
LK ++
Sbjct: 363 LKDFL 367
>gi|325954752|ref|YP_004238412.1| RpoD subfamily RNA polymerase sigma-70 subunit [Weeksella virosa
DSM 16922]
gi|323437370|gb|ADX67834.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Weeksella virosa
DSM 16922]
Length = 288
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 160/250 (64%), Gaps = 10/250 (4%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I +R + E++ ++ VVS+A YQ +GLSL DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 RIKAGDRVALEKLTKANLRFVVSVAKQYQNQGLSLPDLINEGNLGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI +A +L + R P+ EI+E+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKAYALLEQEHERAPSAEEISEV 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDII-----PGPDETMPERMVQKQLMK 308
L++ V+ +++ + +S+D + + + D++ P PD T+ M++ ++
Sbjct: 162 LDMSEGDVKESLKNSGRHVSMDAPLVEGEDSNLYDVLNIGESPSPDNTL---MIES--LR 216
Query: 309 QELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
E++ LQTL+ READ++RL+FGL+G P++ +EIG L+RER+RQI+ A+ +L+ T
Sbjct: 217 VEIERALQTLTPREADLIRLYFGLNGAHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHT 276
Query: 369 NILNNLKVYM 378
+ LK Y+
Sbjct: 277 SRSKILKTYI 286
>gi|116073053|ref|ZP_01470315.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068358|gb|EAU74110.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 321
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 150/239 (62%), Gaps = 3/239 (1%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 84 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 143
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R PT +E+AE + +
Sbjct: 144 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAEFVELPEE 203
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + +++ G D +P V+ + +K +L++LL+ L
Sbjct: 204 EVKDLMCRARQPVSLEMKVGDGDDTELLELLSG-DGELPSEQVESECLKGDLRDLLEQLP 262
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E + +LR+ +G++G+ P+S I + L +SR+R R++ L L+ + + L+ Y+
Sbjct: 263 ELQRKVLRMRYGMNGEDPMSLTGIAKTLKMSRDRTRRLEREGLEMLRNGD--SQLEAYV 319
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 143/226 (63%), Gaps = 1/226 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY YWW
Sbjct: 93 AKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 152
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA KSR IRLP + ++ K+ + LS+ L R PT E++ + I V V
Sbjct: 153 IRQGITRAIAEKSRIIRLPIHITELLNKLKKGQRELSQHLERTPTMQELSAYVEIPVEEV 212
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ + R P+SL+ V D ++ D++ D +P++ ++ MK +L+ LLQ L E
Sbjct: 213 KDLMFRASQPVSLESKVGDGEDTSLLDLL-AIDTDLPDQQIELDCMKGDLEVLLQKLPEL 271
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ +LR+ FG++G+ P++ IGR+L +SR+R+R + L L+Q
Sbjct: 272 QNRVLRMRFGINGEEPMTLTGIGRMLGISRDRVRNLLRDGLKGLRQ 317
>gi|312110191|ref|YP_003988507.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus sp.
Y4.1MC1]
gi|336234655|ref|YP_004587271.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|423719224|ref|ZP_17693406.1| RNA polymerase, rpoD subfamily, sigma-70 subunit [Geobacillus
thermoglucosidans TNO-09.020]
gi|311215292|gb|ADP73896.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
Y4.1MC1]
gi|335361510|gb|AEH47190.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus
thermoglucosidasius C56-YS93]
gi|383368127|gb|EID45402.1| RNA polymerase, rpoD subfamily, sigma-70 subunit [Geobacillus
thermoglucosidans TNO-09.020]
Length = 377
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 132 RIEQGDEEAKRRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYK 191
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 192 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEE 251
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 252 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLED 311
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 312 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 371
Query: 374 LKVYM 378
LK ++
Sbjct: 372 LKDFL 376
>gi|42526449|ref|NP_971547.1| RNA polymerase sigma-70 factor [Treponema denticola ATCC 35405]
gi|422342773|ref|ZP_16423712.1| RNA polymerase sigma factor [Treponema denticola F0402]
gi|449103121|ref|ZP_21739868.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
AL-2]
gi|449106849|ref|ZP_21743510.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
ASLM]
gi|449109925|ref|ZP_21746557.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
ATCC 33520]
gi|449112430|ref|ZP_21748984.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
ATCC 33521]
gi|449115350|ref|ZP_21751814.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
ATCC 35404]
gi|449117914|ref|ZP_21754329.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
H-22]
gi|449120648|ref|ZP_21757031.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
H1-T]
gi|449123053|ref|ZP_21759383.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
MYR-T]
gi|451968548|ref|ZP_21921777.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
US-Trep]
gi|41816642|gb|AAS11428.1| RNA polymerase sigma-70 factor family protein [Treponema denticola
ATCC 35405]
gi|325473389|gb|EGC76584.1| RNA polymerase sigma factor [Treponema denticola F0402]
gi|448946573|gb|EMB27427.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
MYR-T]
gi|448947219|gb|EMB28066.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
H1-T]
gi|448949805|gb|EMB30629.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
H-22]
gi|448953127|gb|EMB33922.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
ATCC 35404]
gi|448955892|gb|EMB36656.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
ATCC 33521]
gi|448957633|gb|EMB38373.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
ATCC 33520]
gi|448963761|gb|EMB44436.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
ASLM]
gi|448965923|gb|EMB46584.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
AL-2]
gi|451702561|gb|EMD56963.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
US-Trep]
Length = 286
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 146/251 (58%), Gaps = 3/251 (1%)
Query: 131 VKYKILCK--ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
+KY L + + +++ ++ S VV++A YQ +GL L DLI EG+IGL+ A+RF+
Sbjct: 35 IKYAKLAEKGDEDAKNMLVNSNLRFVVNVAKKYQNQGLPLMDLISEGNIGLMNAAERFDV 94
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
+GYK +Y WWIKQ+I++AI KSR IRLP + A + +I +A + +
Sbjct: 95 SKGYKFISYAVWWIKQSILKAICEKSRMIRLPLNRANELVQIEKAKKEIDFSGNETKELN 154
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAVTDR-GCMTMQDIIPGPDETMPERMVQKQLM 307
EIA +LN+ S V + R PIS+D V D G ++ D + MPE +
Sbjct: 155 EIAGILNMDNSMVHTIMNAAREPISIDAPVFDEPGSSSVNDFLQDETHQMPEDYAMDMSL 214
Query: 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ E+ ELL+ L +REA+I+R FGL G P+S KE+G + +L++ERIRQI AL +L++
Sbjct: 215 RDEVNELLKNLDDREAEIIRYRFGLGGYAPLSLKEVGLIFNLTKERIRQIEKKALQQLKK 274
Query: 368 TNILNNLKVYM 378
L VY+
Sbjct: 275 PAEKQKLAVYV 285
>gi|239827752|ref|YP_002950376.1| RNA polymerase sigma factor RpoD [Geobacillus sp. WCH70]
gi|239808045|gb|ACS25110.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacillus sp.
WCH70]
Length = 374
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 129 RIEQGDEEAKRRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAEE 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 249 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSEHAAYELLKEQLED 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 309 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 368
Query: 374 LKVYM 378
LK ++
Sbjct: 369 LKDFL 373
>gi|172040581|ref|YP_001800295.1| RNA polymerase sigma factor [Corynebacterium urealyticum DSM 7109]
gi|171851885|emb|CAQ04861.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7109]
Length = 545
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 306 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 365
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A ++I V
Sbjct: 366 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITVD 425
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 426 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 485
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 486 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 544
>gi|427418816|ref|ZP_18908999.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
gi|425761529|gb|EKV02382.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7375]
Length = 434
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 142/237 (59%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YWW
Sbjct: 195 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 254
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A +S+ R T +IA L + V
Sbjct: 255 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQTKGRTATVEDIARELKMTAPQV 314
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + ISL+ V + D++ D PE + + ++++L +LL L+ R
Sbjct: 315 REVLLKVPRSISLETKVGKERDTELGDLLE-TDALSPEELAVRDALRRDLHQLLADLTTR 373
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +++RL FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 374 EQEVIRLRFGLGDGVPYSLAEIGRTLELSRERVRQIESKALQKLRQPKRRNRIRDYL 430
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/249 (35%), Positives = 149/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ + LCK++ +I+S LV+SIA YQG G++L+DL+QEG GL+RGA++F+ +
Sbjct: 326 IHHGTLCKDK-----MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATK 380
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ ++++++SR IRLP M ++ EA L + P + EI
Sbjct: 381 GFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEI 440
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SLD + + ++I P+ PE ++ K+ M+Q+
Sbjct: 441 AEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTPEDILIKEFMRQD 500
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L ++L +L RE ++R FG++ + +EIG ++ +SRER+RQI A KL+
Sbjct: 501 LDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKR 560
Query: 371 LNNLKVYMV 379
N+L+ Y+V
Sbjct: 561 NNHLQQYLV 569
>gi|392531598|ref|ZP_10278735.1| RNA polymerase sigma factor RpoD [Carnobacterium maltaromaticum
ATCC 35586]
Length = 375
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 149/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ ++G+K STY
Sbjct: 135 DQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYQKGFKFSTYA 194
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI +++
Sbjct: 195 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPT 254
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T P +L+K++L+++L TL
Sbjct: 255 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTL 314
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 315 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 374
>gi|403237525|ref|ZP_10916111.1| RNA polymerase sigma factor RpoD [Bacillus sp. 10403023]
Length = 339
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 94 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFK 153
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 154 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 213
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 214 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLED 273
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 274 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 333
Query: 374 LKVYM 378
LK ++
Sbjct: 334 LKDFL 338
>gi|315640587|ref|ZP_07895693.1| RNA polymerase sigma factor rpoD [Enterococcus italicus DSM 15952]
gi|315483615|gb|EFU74105.1| RNA polymerase sigma factor rpoD [Enterococcus italicus DSM 15952]
Length = 368
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 123 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 182
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 242
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 243 MDLSTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLED 302
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FG+D + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 303 VLDTLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 374 LKVYM 378
LK ++
Sbjct: 363 LKDFL 367
>gi|433444375|ref|ZP_20409294.1| RNA polymerase sigma factor rpoD [Anoxybacillus flavithermus
TNO-09.006]
gi|432001667|gb|ELK22540.1| RNA polymerase sigma factor rpoD [Anoxybacillus flavithermus
TNO-09.006]
Length = 372
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 127 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EIAE
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 247 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYELLKEQLED 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 366
Query: 374 LKVYM 378
LK ++
Sbjct: 367 LKDFL 371
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 156/254 (61%), Gaps = 4/254 (1%)
Query: 126 LDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKR 185
L +++K ++ +R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++
Sbjct: 94 LSTSVIKKRLRAGQR-AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEK 152
Query: 186 FNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMP 245
F+P RGYK STY YWWI+Q I RAIA KSR IRLP + M+ K+ + LS+ + R P
Sbjct: 153 FDPARGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTP 212
Query: 246 TDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQ 305
T SE+A+ + + V+ + + P+SL+ V D + D++ G E +P+ ++
Sbjct: 213 TVSELAKYVELPEDDVKDLMCKAGQPVSLETKVGDGEDTVLLDLLAGG-EDLPDEQIEMD 271
Query: 306 LMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
M+ +L LL L + + +LR+ +G+DG P+S IGR+L +SR+R+R + L L
Sbjct: 272 CMRGDLHSLLHQLPDLQCRVLRMRYGMDGDEPMSLTGIGRVLGISRDRVRNLERDGLRGL 331
Query: 366 QQTNILNNLKVYMV 379
++ + +N++ Y V
Sbjct: 332 RRLS--HNVEAYFV 343
>gi|326803636|ref|YP_004321454.1| RNA polymerase sigma factor RpoD [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651510|gb|AEA01693.1| RNA polymerase sigma factor RpoD [Aerococcus urinae
ACS-120-V-Col10a]
Length = 401
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 144/227 (63%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +G+K STY WWI+QAI R+IA+
Sbjct: 174 LVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRSIAD 233
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R PT EI +++ VR ++ ++ P+
Sbjct: 234 QARTIRIPVHMVETINKLVRIQRQLLQELGREPTPEEIGAEMDLPTEKVRNIMKISQEPV 293
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I D P+ ++L+K++L E+L TL++RE ++LRL FGL
Sbjct: 294 SLETPIGEEDDSHLGDFIEDNDAMQPDEYTNQELLKEQLNEVLDTLTDREENVLRLRFGL 353
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQT + +++G+ ++RERIRQI AL KL+ + L LK ++
Sbjct: 354 EDGQTK-TLEQVGQQFGVTRERIRQIEAKALRKLRHPSRLKQLKDFL 399
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 153/245 (62%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 133 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFS 192
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++L P+++E+A L
Sbjct: 193 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQKLGHNPSEAEMAAFLE 252
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ V +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 253 MTVQQLRQLQQLRRQALSLNHRVGKEEDTELMDLLEDEDNLSPEAKMNENMMRQEIWEVL 312
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 313 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 372
Query: 375 KVYMV 379
K +++
Sbjct: 373 KGWLI 377
>gi|212638699|ref|YP_002315219.1| RNA polymerase sigma factor RpoD [Anoxybacillus flavithermus WK1]
gi|212560179|gb|ACJ33234.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Anoxybacillus flavithermus WK1]
Length = 372
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 127 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EIAE
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 247 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLED 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 366
Query: 374 LKVYM 378
LK ++
Sbjct: 367 LKDFL 371
>gi|56750962|ref|YP_171663.1| group2 RNA polymerase sigma factor RpoD4 [Synechococcus elongatus
PCC 6301]
gi|81299380|ref|YP_399588.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like
protein [Synechococcus elongatus PCC 7942]
gi|123769297|sp|Q31QR8.1|RPOD4_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD4
gi|56685921|dbj|BAD79143.1| group2 RNA polymerase sigma factor RpoD4 [Synechococcus elongatus
PCC 6301]
gi|81168261|gb|ABB56601.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like
[Synechococcus elongatus PCC 7942]
Length = 311
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 149/245 (60%), Gaps = 1/245 (0%)
Query: 122 ENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLR 181
EN + + N +L + ++ +++++ LVVS+A YQ +GL L DLIQEGS+GL R
Sbjct: 54 ENPDAESNSENQAVLQAGQRAKTKMLKANLRLVVSVAKKYQNQGLELLDLIQEGSLGLER 113
Query: 182 GAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRL 241
++F+P GYK STY YWWI+Q++ RAI N +RTIRLP ++ +++I + L+ +L
Sbjct: 114 AVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQL 173
Query: 242 RRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDG-AVTDRGCMTMQDIIPGPDETMPER 300
+R+P+ +EIAE L + + V + + ++ SLD A D G + D+IP P P
Sbjct: 174 KRLPSRAEIAEALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMD 233
Query: 301 MVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360
+ + + +++ L L+ERE +L+L FGL + EIGR L++SRERIRQ+
Sbjct: 234 AMDRHIQHEQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEAR 293
Query: 361 ALTKL 365
AL KL
Sbjct: 294 ALQKL 298
>gi|374854339|dbj|BAL57223.1| RNA polymerase primary sigma factor [uncultured Chloroflexi
bacterium]
gi|374855178|dbj|BAL58041.1| RNA polymerase primary sigma factor [uncultured Chloroflexi
bacterium]
Length = 405
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 146/238 (61%), Gaps = 2/238 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I + LV+S+A Y G+G+ DLIQEG+IGL+R K+F+ RG+K STY WW
Sbjct: 167 AREHLITANSRLVISVAKKYMGRGVPFLDLIQEGNIGLIRATKKFDYRRGHKFSTYATWW 226
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QA+ RAIA++ RTIR+P M + K+ + L+++L R PT E+AE L + V
Sbjct: 227 IRQAVTRAIADQGRTIRVPVHMGDQINKLLRVQHQLTQKLGREPTIDELAEALGVPPRKV 286
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
I+ R P+SL+ D + D I + P+ L++++L E+L TL R
Sbjct: 287 ENMIQVARRPLSLETPTDDEEDSVLGDFIEDEEAAPPDETATYNLLREQLNEILSTLPPR 346
Query: 322 EADILRLHFG-LDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E IL+L +G LDGQ+ + +E+GR + ++RER+RQI AL++L+ +I L+ Y+
Sbjct: 347 EVRILQLRYGLLDGQS-YTLEEVGRKMGVTRERVRQIEAQALSRLRHPSIRRKLRDYL 403
>gi|312622967|ref|YP_004024580.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor kronotskyensis 2002]
gi|312203434|gb|ADQ46761.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor kronotskyensis 2002]
Length = 417
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GLL+ ++F+ +GYK STY
Sbjct: 177 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYA 236
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + R PT EIA+ +N+ V
Sbjct: 237 TWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPV 296
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D IP D P ++K++L E+L +L
Sbjct: 297 EKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSL 356
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +L+L FGL+ + +E+GR +++RERIRQI AL KL+ + LK ++
Sbjct: 357 NEREKKVLKLRFGLEDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416
>gi|313673100|ref|YP_004051211.1| RNA polymerase, sigma 70 subunit, rpod subfamily [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939856|gb|ADR19048.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calditerrivibrio
nitroreducens DSM 19672]
Length = 327
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 158/254 (62%), Gaps = 2/254 (0%)
Query: 125 ELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
E +Y L K +I ++E+ ++I S VVS+A Y+ G+SL DLI +G++GL+ AK
Sbjct: 75 EEEYELGK-RIQQGDQEALNKLILSNIKFVVSMANRYKNTGVSLSDLINQGNLGLVEAAK 133
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
RF+P++G K +Y WWI+QA+I+ +A +S T++LP A ++ KI EA LS++ R
Sbjct: 134 RFDPDKGVKFISYAVWWIRQAMIQLLAEQSGTVKLPIKQASLLYKINEAIETLSKKYHRE 193
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT EI+E LNI + + +++ +S + + D T D++ + + ++
Sbjct: 194 PTSEEISEYLNIPKENIENILMVSKNYLSFESPIKDGEDRTFLDLMESRTIKVEDEVINH 253
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
L K L+ L+Q L EREA IL++ +GLDG+ P++ +E+G +L++SRER+RQI AL+K
Sbjct: 254 TL-KDTLQSLIQELDEREAKILKMRYGLDGENPMTLEEVGNILNISRERVRQIESRALSK 312
Query: 365 LQQTNILNNLKVYM 378
L++ + L+ Y+
Sbjct: 313 LRKKAVKKRLQDYL 326
>gi|257867642|ref|ZP_05647295.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC30]
gi|257873971|ref|ZP_05653624.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC10]
gi|257876550|ref|ZP_05656203.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC20]
gi|325571155|ref|ZP_08146727.1| DNA-directed RNA polymerase sigma subunit RpoD [Enterococcus
casseliflavus ATCC 12755]
gi|420263955|ref|ZP_14766590.1| RNA polymerase sigma-43 factor [Enterococcus sp. C1]
gi|257801725|gb|EEV30628.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC30]
gi|257808135|gb|EEV36957.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC10]
gi|257810716|gb|EEV39536.1| RNA polymerase sigma-43 factor [Enterococcus casseliflavus EC20]
gi|325156240|gb|EGC68426.1| DNA-directed RNA polymerase sigma subunit RpoD [Enterococcus
casseliflavus ATCC 12755]
gi|394768854|gb|EJF48731.1| RNA polymerase sigma-43 factor [Enterococcus sp. C1]
Length = 368
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 123 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 182
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 242
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 243 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLED 302
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FG+D + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 303 VLDTLTDREENVLRLRFGIDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 374 LKVYM 378
LK ++
Sbjct: 363 LKDFL 367
>gi|40143|emb|CAA27538.1| unnamed protein product [Bacillus subtilis]
gi|143454|gb|AAA22709.1| RNA polymerase sigma-43 factor [Bacillus subtilis]
gi|1303833|dbj|BAA12489.1| RpoD [Bacillus subtilis]
Length = 371
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLI EG++GL++ ++F+ +GYK
Sbjct: 126 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIHEGNMGLMKAVEKFDYRKGYK 185
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 186 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 245
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 246 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 305
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 306 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 365
Query: 374 LKVYM 378
LK ++
Sbjct: 366 LKDFL 370
>gi|187736115|ref|YP_001878227.1| RpoD family RNA polymerase sigma-70 subunit [Akkermansia
muciniphila ATCC BAA-835]
gi|187426167|gb|ACD05446.1| RNA polymerase, sigma 70 subunit, RpoD family [Akkermansia
muciniphila ATCC BAA-835]
Length = 688
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 145/245 (59%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K L + R +++ ++ + LV+SIA Y +GLS DLIQEG++GL++ ++F RGYK
Sbjct: 439 KWLREARRAKDEMVEANLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYK 498
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI R+IA+++RTIR+P M + K+ L + R PT EIAE
Sbjct: 499 FSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLMRVQKQLVQEYGREPTPEEIAEE 558
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ V VR ++ + PISL V D + D I P +K+++K+
Sbjct: 559 IHLPVERVRSVLKMAQQPISLQAPVGDSDDTSFGDFIEDKAAENPMEEASFSFLKEKIKD 618
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE +++ FGL +P + +E+GR S++RERIRQI AL KL+ ++
Sbjct: 619 VLDTLTDREREVIEQRFGLRDGSPRTLEEVGRQFSVTRERIRQIEAKALRKLRHPTRISK 678
Query: 374 LKVYM 378
+K ++
Sbjct: 679 IKGFL 683
>gi|163848612|ref|YP_001636656.1| sigma-70 family RNA polymerase sigma factor [Chloroflexus
aurantiacus J-10-fl]
gi|222526547|ref|YP_002571018.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus sp.
Y-400-fl]
gi|163669901|gb|ABY36267.1| RNA polymerase sigma factor, sigma-70 family [Chloroflexus
aurantiacus J-10-fl]
gi|222450426|gb|ACM54692.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus sp.
Y-400-fl]
Length = 381
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 148/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
++++ +I++ LVVSIA Y GL++ DL+QEG+IGL+R ++F+ ++G+K STY
Sbjct: 142 QDARHHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYKKGHKFSTYAT 201
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP M ++++ ++ L + ++R PT EIA+ + I
Sbjct: 202 WWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHRLQQTMQREPTPEEIADAMGISAG 261
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
VR +E + HP+SL+ V G M D I + P L++++L+E+L L
Sbjct: 262 KVRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASLLREQLEEVLMKLP 321
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
ERE I++L +GL + +E+G ++RERIRQI +AL KL+ ++ L+ Y+
Sbjct: 322 ERERKIIQLRYGLKDGRYRTLEEVGIEFGITRERIRQIEAVALRKLRHPHLGKKLRGYL 380
>gi|219847900|ref|YP_002462333.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219542159|gb|ACL23897.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 381
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 148/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
++++ +I++ LVVSIA Y GL++ DL+QEG+IGL+R ++F+ ++G+K STY
Sbjct: 142 QDARHHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKFDYKKGHKFSTYAT 201
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP M ++++ ++ L + ++R PT EIA+ + I
Sbjct: 202 WWIRQAITRAIADQSRTIRLPVHMGEAISQVKRTSHRLQQTMQREPTPEEIADAMGISAG 261
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
VR +E + HP+SL+ V G M D I + P L++++L+E+L L
Sbjct: 262 KVRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDDRISTPAEAAAASLLREQLEEVLMKLP 321
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
ERE I++L +GL + +E+G ++RERIRQI +AL KL+ ++ L+ Y+
Sbjct: 322 ERERKIIQLRYGLKDGRYRTLEEVGIEFGITRERIRQIEAVALRKLRHPHLGKKLRGYL 380
>gi|78044024|ref|YP_359316.1| RNA polymerase sigma factor RpoD [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996139|gb|ABB15038.1| RNA polymerase sigma factor RpoD [Carboxydothermus hydrogenoformans
Z-2901]
Length = 370
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 146/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ ++ + LVVSIA Y G+G+ DLIQEG++GLL+ ++F+ +GYK STY
Sbjct: 130 DEEAKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYA 189
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA+ + I
Sbjct: 190 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISE 249
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D + PD P L++++L E+L+TL
Sbjct: 250 DKVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLREQLDEVLKTL 309
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 310 TEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 369
>gi|227549126|ref|ZP_03979175.1| RNA polymerase major sigma subunit [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078794|gb|EEI16757.1| RNA polymerase major sigma subunit [Corynebacterium lipophiloflavum
DSM 44291]
Length = 520
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 281 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 340
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 341 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 400
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 401 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLS 460
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 461 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 519
>gi|449130718|ref|ZP_21766937.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
SP37]
gi|448941758|gb|EMB22658.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
SP37]
Length = 286
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/251 (37%), Positives = 146/251 (58%), Gaps = 3/251 (1%)
Query: 131 VKYKILCK--ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
+KY L + + +++ ++ S VV++A YQ +GL L DLI EG+IGL+ A+RF+
Sbjct: 35 IKYAKLAEKGDEDAKNMLVNSNLRFVVNVAKKYQNQGLPLMDLISEGNIGLMNAAERFDV 94
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
+GYK +Y WWIKQ+I++AI KSR IRLP + A + +I +A + +
Sbjct: 95 SKGYKFISYAVWWIKQSILKAICEKSRMIRLPLNRANELVQIEKAKKEIDFSGNETKELN 154
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAVTDR-GCMTMQDIIPGPDETMPERMVQKQLM 307
EIA +LN+ S V + R P+S+D V D G ++ D + MPE +
Sbjct: 155 EIAGILNMDNSMVHTIMNAAREPVSIDAPVFDEPGSSSVNDFLQDETHQMPEDYAMDMSL 214
Query: 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ E+ ELL+ L +REA+I+R FGL G P+S KE+G + +L++ERIRQI AL +L++
Sbjct: 215 RDEVNELLKNLDDREAEIIRYRFGLGGYAPLSLKEVGLIFNLTKERIRQIEKKALQQLKK 274
Query: 368 TNILNNLKVYM 378
L VY+
Sbjct: 275 PAEKQKLAVYV 285
>gi|376254497|ref|YP_005142956.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae PW8]
gi|372117581|gb|AEX70051.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae PW8]
Length = 517
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 278 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 337
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 338 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 397
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 398 KVLEIQQYAREPISLDQTIGDEGASQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 457
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 458 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 516
>gi|414083890|ref|YP_006992598.1| RNA polymerase sigma factor rpoD [Carnobacterium maltaromaticum
LMA28]
gi|412997474|emb|CCO11283.1| RNA polymerase sigma factor rpoD [Carnobacterium maltaromaticum
LMA28]
Length = 319
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 149/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ ++G+K STY
Sbjct: 79 DQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYQKGFKFSTYA 138
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI +++
Sbjct: 139 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDLPT 198
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T P +L+K++L+++L TL
Sbjct: 199 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLEDVLDTL 258
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 259 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 318
>gi|357021635|ref|ZP_09083866.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
gi|356479383|gb|EHI12520.1| RNA polymerase sigma factor SigB [Mycobacterium thermoresistibile
ATCC 19527]
Length = 319
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 174/327 (53%), Gaps = 26/327 (7%)
Query: 59 IESATDAAALASAAVRTAKDAV---SFANGAEEVCF----DDG-ECESVLKMMRRRSRRK 110
++S DA + A+ VR + + + + AEEV + G + +LK +R + +
Sbjct: 9 VDSDLDAQSPAADLVRVYLNGIGKTALLDAAEEVELAKRIEAGLYAQHLLKTKKRLGQNR 68
Query: 111 KRTKESDFLDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKD 170
KR E+ D E E++ ++ + LVVS+A Y G+G+ L D
Sbjct: 69 KRDLEAIVRDGE------------------EARRHLLEANLRLVVSLAKRYTGRGMPLLD 110
Query: 171 LIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKI 230
LIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A++SRTIRLP + V K+
Sbjct: 111 LIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKL 170
Query: 231 AEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDII 290
A L + L R PTD E+AE I V + ++ +R P+SLD V + D I
Sbjct: 171 ARIKRELHQTLGREPTDEELAEESGIPVEKIADLLDHSRDPVSLDMPVGSDEEAPLGDFI 230
Query: 291 PGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLS 350
+ E V +L+ +++ +L TL ERE ++RL FGLD P + +IG+L LS
Sbjct: 231 EDAEAMSAENAVIAELLHTDIRHVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLS 290
Query: 351 RERIRQIRGIALTKLQQTNILNNLKVY 377
RER+RQI + KL+ + L+ Y
Sbjct: 291 RERVRQIEREVMAKLRHGERADRLRSY 317
>gi|225412271|ref|ZP_03761460.1| hypothetical protein CLOSTASPAR_05493 [Clostridium asparagiforme
DSM 15981]
gi|225042189|gb|EEG52435.1| hypothetical protein CLOSTASPAR_05493 [Clostridium asparagiforme
DSM 15981]
Length = 376
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 146/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+RE+ +R+ S LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 135 DREAAKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 194
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI R+IA+++RTIR+P M + ++ + L + L R PT EIA + V
Sbjct: 195 TWWIRQAITRSIADQARTIRIPVHMVENINRLVRTSRQLLQELGREPTTEEIAARAEMSV 254
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
V ++ ++ P+SL+ + + + D I + T+P+ L+ ++L E+L TL
Sbjct: 255 ERVSEILKMSQEPVSLETPIGEEEDSHLGDFIQDDNVTVPQDAATYTLLHEQLMEVLTTL 314
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FGLD P + +E+GR ++RERIRQI AL KL+ + LK Y+
Sbjct: 315 TEREQKVLRLRFGLDDGRPRTLEEVGREFKVTRERIRQIEAKALRKLRHPSRSKKLKDYL 374
>gi|257126628|ref|YP_003164742.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptotrichia
buccalis C-1013-b]
gi|257050567|gb|ACV39751.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptotrichia
buccalis C-1013-b]
Length = 392
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 154/253 (60%), Gaps = 3/253 (1%)
Query: 125 ELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
E+DY ++L E E+++++I S LVVSIA + +GL + DLIQEG++GL++ +
Sbjct: 141 EIDY---AQRVLDGEEEAKQKLIESNLRLVVSIAKKHTNRGLKMLDLIQEGNMGLMKAVE 197
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F E+G+K STY WWI+QAI RAIA++ RTIR+P M + KI + + ++ + +
Sbjct: 198 KFEYEKGFKFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGKE 257
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT E+AE L + V V+ +E + PISL+ V + D + P +
Sbjct: 258 PTAEELAEKLELPVEKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFANPYDATTR 317
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
L+K++L E+L+TL+ERE +LR +GLD + + +E+G++ +++RERIRQI AL K
Sbjct: 318 ILLKEQLDEVLKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKALRK 377
Query: 365 LQQTNILNNLKVY 377
L+ + L+ Y
Sbjct: 378 LRHPSRRKKLEDY 390
>gi|392989884|ref|YP_006488477.1| RNA polymerase sigma factor RpoD [Enterococcus hirae ATCC 9790]
gi|392337304|gb|AFM71586.1| RNA polymerase sigma factor RpoD [Enterococcus hirae ATCC 9790]
Length = 369
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 124 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 183
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 184 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 243
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 244 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLED 303
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 304 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 363
Query: 374 LKVYM 378
LK ++
Sbjct: 364 LKDFL 368
>gi|78780107|ref|YP_398219.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9312]
gi|78713606|gb|ABB50783.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9312]
Length = 344
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 154/250 (61%), Gaps = 4/250 (1%)
Query: 130 LVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPE 189
++K ++ +R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P
Sbjct: 98 IIKKRLRAGQR-AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPA 156
Query: 190 RGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSE 249
RGYK STY YWWI+Q I RAIA KSR IRLP + M+ K+ + LS+ + R PT SE
Sbjct: 157 RGYKFSTYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSE 216
Query: 250 IAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQ 309
+A+ + + V+ + + P+SL+ V D + D++ G E +P+ ++ M+
Sbjct: 217 LAKYVELPEEDVKDLMCKAGQPVSLETKVGDGEDTVLLDLLAG-GEDLPDEQIEMDCMRG 275
Query: 310 ELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369
+L LL L + + +LR+ +G+DG P+S IGR+L +SR+R+R + L L++ +
Sbjct: 276 DLHSLLHQLPDLQCRVLRMRYGMDGDEPMSLTGIGRVLGISRDRVRNLERDGLRGLRRLS 335
Query: 370 ILNNLKVYMV 379
+N++ Y V
Sbjct: 336 --DNVEAYFV 343
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 152/246 (61%), Gaps = 3/246 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K K + ++ ++I + LVV+IA YQ + + DLIQEGS+GL RG ++F+P +G+K
Sbjct: 84 KTQQKGQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFK 143
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA + RTIRLP + + KI LS+RL R P+ SEIA
Sbjct: 144 FSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKRTQRELSQRLGRNPSPSEIARE 203
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L + + +R + R PISLD V D + +++ D P++ + ++L++Q+L+
Sbjct: 204 LELQPAQIREYLSVARQPISLDVRVGDNQDTELSELLED-DSVSPDKYITQELLRQDLRM 262
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL L+ ++ ++ L FGL+ +S +IG+ L+LSRER+RQ+ AL L++ +N
Sbjct: 263 LLDELTPQQQQVISLRFGLEDGKEMSLAKIGKQLNLSRERVRQLEHQALAHLRKRR--DN 320
Query: 374 LKVYMV 379
++ Y++
Sbjct: 321 IEEYII 326
>gi|1710683|sp|P52328.1|RPSD2_BACSP RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|149623|gb|AAA25264.1| RNA polymerase sigma-subunit [Leptospira borgpetersenii]
Length = 377
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I+ + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 132 RIMNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHNKGFK 191
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA
Sbjct: 192 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAE 251
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + V VR ++ + P+SL+ + + + D I + P +L+K++L++
Sbjct: 252 MELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLED 311
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL+ERE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 312 VLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 371
Query: 374 LKVYM 378
LK ++
Sbjct: 372 LKDFL 376
>gi|291563082|emb|CBL41898.1| RNA polymerase, sigma 70 subunit, RpoD [butyrate-producing
bacterium SS3/4]
Length = 374
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + E+++++ S LVVSIA Y G+G+ L DLIQEG++GL++ ++F+ +GYK
Sbjct: 128 KIELGDEEAKKKLAESNLRLVVSIAKRYAGRGMQLLDLIQEGNLGLIKAVEKFDYRKGYK 187
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + ++ L ++L R T E+A+
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLVRTQRQLVQKLGREATPEELAKE 247
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ V VR ++ ++ P+SL+ + + + D I + +P L+ ++L +
Sbjct: 248 LDMPVERVREIMKISQDPVSLETPIGEEEDSHLGDFIQDNNVEVPADAATYTLLHEQLMD 307
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL+ERE +LRL FGLD P + +E+GR +++RERIRQI AL KL+ +
Sbjct: 308 VLSTLTEREQKVLRLRFGLDDGRPRTLEEVGRQFNVTRERIRQIEAKALRKLRHPSRSKI 367
Query: 374 LKVYM 378
LK Y+
Sbjct: 368 LKDYL 372
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%), Gaps = 3/245 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ + + + +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 84 QTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYK 143
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA + RTIRLP + + KI + L+++L R PT EIA+
Sbjct: 144 FSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPVEIAKE 203
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L + + +R + R P+SLD V D +QD++ D PE ++ ++Q+L
Sbjct: 204 LELEPAQIREYLNMARQPVSLDVRVGDNQDTELQDMLED-DGPSPEYYTNQEFLRQDLNN 262
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL L+ ++ ++L L FGL+ +S ++G L+LSRER+RQ+ AL L++ N
Sbjct: 263 LLAELTPQQREVLALRFGLEDGNELSLAKVGERLNLSRERVRQLEHQALAHLRRRRA--N 320
Query: 374 LKVYM 378
+K Y+
Sbjct: 321 VKEYV 325
>gi|357588808|ref|ZP_09127474.1| RNA polymerase sigma factor [Corynebacterium nuruki S6-4]
Length = 539
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVSIA Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 300 RKAKSHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYVKGYKFSTYAT 359
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A ++I V
Sbjct: 360 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITVD 419
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 420 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLS 479
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+REA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 480 DREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 538
>gi|227503480|ref|ZP_03933529.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
gi|227075983|gb|EEI13946.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
Length = 493
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 254 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 313
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 314 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 373
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 374 KVMEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLS 433
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 434 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 492
>gi|33864510|ref|NP_896070.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33641290|emb|CAE22420.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 344
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 144/236 (61%), Gaps = 2/236 (0%)
Query: 132 KYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
++KI +R +++R++ + LVVS+A YQ +GL L DL+QEG+IGL R +F+P G
Sbjct: 101 RHKIRMGKR-ARDRMMSANLRLVVSVAKKYQNQGLELLDLVQEGAIGLERAVDKFDPAMG 159
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
YK STY YWWI+Q + RAI N +RTIRLP ++ ++K+ + LS R R P E+A
Sbjct: 160 YKFSTYAYWWIRQGMTRAIDNSARTIRLPIHISEKLSKMRRISRELSHRFGRQPNRLELA 219
Query: 252 EMLNIHVSTVRLAIERTRHPISLDG-AVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
+ I + I ++ SLD A + T+ ++IP PD P + + + K+
Sbjct: 220 HAMGIQPQDLEDLIAQSAPCASLDAHARGEEDRSTLGELIPDPDGAEPMEGLDRSIQKEH 279
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
L L L+ERE ILRL FGLDG+ P++ EIGR +S+SRER+RQ+ A+ KL+
Sbjct: 280 LGGWLSQLNEREQKILRLRFGLDGEEPLTLAEIGRQISVSRERVRQLEAKAILKLR 335
>gi|443289588|ref|ZP_21028682.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
gi|385887203|emb|CCH16756.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
Length = 338
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 144/244 (59%), Gaps = 1/244 (0%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
I+ + R +++ ++ + LVVSIA Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 93 IVAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYAKGYKF 152
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M V ++ A L+ L R PT +E+A L
Sbjct: 153 STYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRARRELAVTLGREPTVAEVARAL 212
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPD-ETMPERMVQKQLMKQELKE 313
+I V I R P+SLD AV D G + D + D T P + ++ E+
Sbjct: 213 DIPEFQVIELISYDREPVSLDQAVGDDGESALGDFVASVDPRTDPGEGAAQGELRNEVSI 272
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TLS+RE ++RL FGLD + E+GR LSRERIRQI + L KL+
Sbjct: 273 VLSTLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTLLKLRAPERAQR 332
Query: 374 LKVY 377
L+ Y
Sbjct: 333 LEAY 336
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 151/235 (64%), Gaps = 3/235 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I+ + R +++++I + LVVSIA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 89 EIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 148
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA SRTIRLP + + KI L ++ R T +EIA+
Sbjct: 149 FSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKA 208
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELK 312
L++ S +R + +RHP+SLD V D +QD++ DE+ + V +QL++Q+LK
Sbjct: 209 LDLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLL--EDESASADNYVTQQLLRQDLK 266
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+L+ L+ ++ ++L L +GL+ +S ++G +++SRER+RQ+ AL L++
Sbjct: 267 DLMADLTPQQREVLTLRYGLNDGKEMSLSKVGVHMNISRERVRQLENQALNHLRR 321
>gi|422409684|ref|ZP_16486645.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
F2-208]
gi|313608766|gb|EFR84582.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
F2-208]
Length = 374
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 129 RIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEE 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 249 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ +
Sbjct: 309 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 368
Query: 374 LKVYM 378
LK ++
Sbjct: 369 LKDFL 373
>gi|294622679|ref|ZP_06701641.1| RNA polymerase sigma factor RpoD [Enterococcus faecium U0317]
gi|425032753|ref|ZP_18437770.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 515]
gi|431776262|ref|ZP_19564529.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2560]
gi|291597877|gb|EFF29007.1| RNA polymerase sigma factor RpoD [Enterococcus faecium U0317]
gi|403012152|gb|EJY25413.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 515]
gi|430641596|gb|ELB77397.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2560]
Length = 369
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 124 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 183
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 184 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 243
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 244 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLED 303
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 304 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 363
Query: 374 LKVYM 378
LK ++
Sbjct: 364 LKDFL 368
>gi|357421170|ref|YP_004928619.1| RNA polymerase sigma-70 factor [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
gi|354803680|gb|AER40794.1| RNA polymerase sigma-70 factor [Blattabacterium sp. (Mastotermes
darwiniensis) str. MADAR]
Length = 287
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 153/235 (65%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
++++ + VVS+A YQ +GLSL DLI EG++GL++G RF+ RG+K +YV WWI+
Sbjct: 52 DKLVNANLRFVVSVAKQYQNQGLSLCDLINEGNLGLIKGILRFDETRGFKCISYVVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
QAI++AIA +SR+IR P + ++ KI + L + L+R P+ EIAE L+++ V
Sbjct: 112 QAILQAIAEQSRSIRQPTNKLALLNKILKTLAQLEQELQRTPSSREIAEHLDMNEKDVEE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+I+ + +S+D + + + D++ + P+ ++K+ +++++K +L TLSERE
Sbjct: 172 SIKNSGKHVSMDAPLIEGEDSNLYDLVRSEESPRPDEHLEKESLRKDIKRILGTLSERER 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++ LHFGL+G P++ +E+G+ L+RER+RQI IAL +L+ ++ LK Y+
Sbjct: 232 RVIILHFGLNGSPPMTLEEVGQSCDLTRERVRQIESIALKRLKHSSRSKILKPYL 286
>gi|227551146|ref|ZP_03981195.1| DNA-directed RNA polymerase sigma subunit RpoD [Enterococcus
faecium TX1330]
gi|257887737|ref|ZP_05667390.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,141,733]
gi|257896230|ref|ZP_05675883.1| RNA polymerase sigma-43 factor [Enterococcus faecium Com12]
gi|257898868|ref|ZP_05678521.1| RNA polymerase sigma-43 factor [Enterococcus faecium Com15]
gi|293379528|ref|ZP_06625670.1| RNA polymerase sigma factor RpoD [Enterococcus faecium PC4.1]
gi|293570226|ref|ZP_06681295.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E980]
gi|424765155|ref|ZP_18192558.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX1337RF]
gi|425053967|ref|ZP_18457482.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 505]
gi|430840937|ref|ZP_19458858.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1007]
gi|431034734|ref|ZP_19491611.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1590]
gi|431068931|ref|ZP_19494124.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1604]
gi|431102158|ref|ZP_19496769.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1613]
gi|431580904|ref|ZP_19519996.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1861]
gi|431738056|ref|ZP_19527006.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1972]
gi|431740484|ref|ZP_19529399.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2039]
gi|431751483|ref|ZP_19540171.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2620]
gi|431756330|ref|ZP_19544962.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3083]
gi|431761581|ref|ZP_19550143.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3548]
gi|227179708|gb|EEI60680.1| DNA-directed RNA polymerase sigma subunit RpoD [Enterococcus
faecium TX1330]
gi|257823791|gb|EEV50723.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,141,733]
gi|257832795|gb|EEV59216.1| RNA polymerase sigma-43 factor [Enterococcus faecium Com12]
gi|257836780|gb|EEV61854.1| RNA polymerase sigma-43 factor [Enterococcus faecium Com15]
gi|291609633|gb|EFF38894.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E980]
gi|292641837|gb|EFF60005.1| RNA polymerase sigma factor RpoD [Enterococcus faecium PC4.1]
gi|402417177|gb|EJV49481.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX1337RF]
gi|403036891|gb|EJY48224.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 505]
gi|430494668|gb|ELA70903.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1007]
gi|430563449|gb|ELB02658.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1590]
gi|430567870|gb|ELB06937.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1604]
gi|430570386|gb|ELB09347.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1613]
gi|430594671|gb|ELB32635.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1861]
gi|430598092|gb|ELB35852.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1972]
gi|430603348|gb|ELB40878.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2039]
gi|430615264|gb|ELB52222.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2620]
gi|430620184|gb|ELB56986.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3083]
gi|430624273|gb|ELB60923.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3548]
Length = 369
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 124 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 183
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 184 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 243
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 244 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLED 303
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 304 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 363
Query: 374 LKVYM 378
LK ++
Sbjct: 364 LKDFL 368
>gi|68536164|ref|YP_250869.1| RNA polymerase sigma factor [Corynebacterium jeikeium K411]
gi|68263763|emb|CAI37251.1| RNA polymerase sigma factor A [Corynebacterium jeikeium K411]
Length = 544
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 145/239 (60%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 305 RRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYVKGYKFSTYAT 364
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A ++I V
Sbjct: 365 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITVD 424
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 425 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLS 484
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 485 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 543
>gi|336424191|ref|ZP_08604234.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336007859|gb|EGN37879.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 397
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 149/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 157 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYA 216
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIAE +++ V
Sbjct: 217 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAEEMSMPV 276
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P L+K++L E+L TL
Sbjct: 277 ERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFSLLKEQLNEVLGTL 336
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 337 TEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 396
>gi|149370424|ref|ZP_01890113.1| RNA polymerase sigma-70 factor [unidentified eubacterium SCB49]
gi|149355975|gb|EDM44532.1| RNA polymerase sigma-70 factor [unidentified eubacterium SCB49]
Length = 288
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 145/225 (64%), Gaps = 1/225 (0%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
+++ R+ V+S+A YQ +GLSL DLI EG++GL++ AKRF+ RG+K +Y WWI+
Sbjct: 52 DKLTRANLRFVISVAKQYQNQGLSLPDLINEGNVGLVKAAKRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++AIA +SR +RLP + G + K+ +A+ L + R+PT EIA L+I VS+V+
Sbjct: 112 QSILQAIAEQSRIVRLPLNKIGDINKVKKASIHLQQVYERVPTAQEIANELDITVSSVKS 171
Query: 264 AIERTRHPISLDGAVTD-RGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSERE 322
+++ + IS+D + + D+I + P+ + ++ +K E+ L TLS+RE
Sbjct: 172 SMKNSNRSISMDAPFQEGENDNNLYDVISSGESPNPDNGLMQESLKTEIDRALDTLSQRE 231
Query: 323 ADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
AD+++L+FGL G ++ +EIG LSRER+RQIR A+ +L+
Sbjct: 232 ADVVKLNFGLSGNPVMTLQEIGDTFDLSRERVRQIREKAIRRLRH 276
>gi|452948554|gb|EME54032.1| RNA polymerase primary sigma factor [Amycolatopsis decaplanina DSM
44594]
Length = 466
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 240 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 299
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 300 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 359
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 360 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 419
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 420 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 465
>gi|261367093|ref|ZP_05979976.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
gi|282571217|gb|EFB76752.1| RNA polymerase sigma factor RpoD [Subdoligranulum variabile DSM
15176]
Length = 364
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 147/237 (62%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 127 AKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYATWW 186
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + ++ L P+ EIAE L++ V V
Sbjct: 187 IRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHEYGHDPSAEEIAERLDMSVDKV 246
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + P+SL+ + + + D IP D +P + L+K++L ++L+TL+ R
Sbjct: 247 REIMRVAQEPVSLETPIGEEEDSHLGDFIPDDDAPVPAEAASQTLLKEQLADVLKTLTPR 306
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGL+ P + +E+G+ +++RERIRQI AL KL+ + L+ ++
Sbjct: 307 EEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLRDFL 363
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 152/235 (64%), Gaps = 3/235 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I+ + R +++++I + LVVSIA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 89 EIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 148
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA SRTIRLP + + KI + L ++ R T +EIA+
Sbjct: 149 FSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKKVQRELFQQYGRNATPTEIAKA 208
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELK 312
L++ S +R + +RHP+SLD V D +QD++ DE+ + V +QL++Q+LK
Sbjct: 209 LDLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLL--EDESASADNYVTQQLLRQDLK 266
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+L+ L+ ++ ++L L +GL+ +S ++G +++SRER+RQ+ AL L++
Sbjct: 267 DLMADLTPQQREVLTLRYGLNDGKEMSLSKVGVHMNISRERVRQLENQALNHLRR 321
>gi|300765597|ref|ZP_07075576.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
N1-017]
gi|300513698|gb|EFK40766.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
N1-017]
Length = 374
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 146/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY W
Sbjct: 136 EAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATW 195
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 196 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEK 255
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I D T P +L+K++L+++L TL++
Sbjct: 256 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTD 315
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ + LK ++
Sbjct: 316 REENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
>gi|69249285|ref|ZP_00604924.1| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70
region 4:Sigma-70 region 1.2 [Enterococcus faecium DO]
gi|257877975|ref|ZP_05657628.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,230,933]
gi|257881238|ref|ZP_05660891.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,502]
gi|257884904|ref|ZP_05664557.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,501]
gi|257889826|ref|ZP_05669479.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,410]
gi|260559026|ref|ZP_05831212.1| RNA polymerase sigma-43 factor [Enterococcus faecium C68]
gi|261207559|ref|ZP_05922244.1| RNA polymerase sigma-43 factor [Enterococcus faecium TC 6]
gi|289565071|ref|ZP_06445524.1| RNA polymerase sigma factor rpoD [Enterococcus faecium D344SRF]
gi|293556716|ref|ZP_06675279.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1039]
gi|293563374|ref|ZP_06677823.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1162]
gi|293568034|ref|ZP_06679372.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1071]
gi|294614871|ref|ZP_06694766.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1636]
gi|294618226|ref|ZP_06697809.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1679]
gi|314939477|ref|ZP_07846711.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133a04]
gi|314941108|ref|ZP_07848006.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133C]
gi|314949892|ref|ZP_07853194.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0082]
gi|314951693|ref|ZP_07854736.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133A]
gi|314993960|ref|ZP_07859287.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133B]
gi|314996911|ref|ZP_07861912.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133a01]
gi|383328545|ref|YP_005354429.1| RNA polymerase sigma factor RpoD [Enterococcus faecium Aus0004]
gi|389868271|ref|YP_006375694.1| RNA polymerase sigma-43 factor [Enterococcus faecium DO]
gi|406580165|ref|ZP_11055383.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD4E]
gi|406582348|ref|ZP_11057473.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD3E]
gi|406584629|ref|ZP_11059654.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD2E]
gi|406589486|ref|ZP_11063921.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD1E]
gi|410937789|ref|ZP_11369648.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD5E]
gi|415895001|ref|ZP_11550497.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E4453]
gi|424791669|ref|ZP_18218011.1| RNA polymerase sigma factor RpoD [Enterococcus faecium V689]
gi|424796468|ref|ZP_18222191.1| RNA polymerase sigma factor RpoD [Enterococcus faecium S447]
gi|424821626|ref|ZP_18246653.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R501]
gi|424856308|ref|ZP_18280550.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R499]
gi|424867386|ref|ZP_18291189.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R497]
gi|424949587|ref|ZP_18365193.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R496]
gi|424954619|ref|ZP_18369509.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R494]
gi|424957543|ref|ZP_18372265.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R446]
gi|424960595|ref|ZP_18375097.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1986]
gi|424964787|ref|ZP_18378851.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1190]
gi|424967668|ref|ZP_18381352.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1140]
gi|424972400|ref|ZP_18385741.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1139]
gi|424975693|ref|ZP_18388835.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1137]
gi|424977020|ref|ZP_18390062.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1123]
gi|424981472|ref|ZP_18394205.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV99]
gi|424983417|ref|ZP_18396004.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV69]
gi|424987850|ref|ZP_18400202.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV38]
gi|424991247|ref|ZP_18403414.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV26]
gi|424994875|ref|ZP_18406790.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV168]
gi|424997773|ref|ZP_18409508.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV165]
gi|425001952|ref|ZP_18413424.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV161]
gi|425003970|ref|ZP_18415303.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV102]
gi|425009153|ref|ZP_18420185.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV1]
gi|425010373|ref|ZP_18421329.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E422]
gi|425013357|ref|ZP_18424093.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E417]
gi|425018368|ref|ZP_18428821.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C621]
gi|425019998|ref|ZP_18430327.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C497]
gi|425025859|ref|ZP_18434721.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C1904]
gi|425036841|ref|ZP_18441556.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 514]
gi|425039329|ref|ZP_18443877.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 513]
gi|425045653|ref|ZP_18449740.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 510]
gi|425049482|ref|ZP_18453329.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 509]
gi|425051398|ref|ZP_18455064.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 506]
gi|425059340|ref|ZP_18462686.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 504]
gi|425062159|ref|ZP_18465330.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 503]
gi|427395200|ref|ZP_18888122.1| RNA polymerase sigma factor rpoD [Enterococcus durans FB129-CNAB-4]
gi|430820429|ref|ZP_19439061.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0045]
gi|430821924|ref|ZP_19440505.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0120]
gi|430825044|ref|ZP_19443255.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0164]
gi|430828311|ref|ZP_19446433.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0269]
gi|430830261|ref|ZP_19448319.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0333]
gi|430833555|ref|ZP_19451567.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0679]
gi|430836259|ref|ZP_19454242.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0680]
gi|430838928|ref|ZP_19456871.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0688]
gi|430844551|ref|ZP_19462449.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1050]
gi|430846534|ref|ZP_19464392.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1133]
gi|430850131|ref|ZP_19467897.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1185]
gi|430852830|ref|ZP_19470561.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1258]
gi|430854361|ref|ZP_19472074.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1392]
gi|430858603|ref|ZP_19476230.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1552]
gi|430861922|ref|ZP_19479274.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1573]
gi|430864408|ref|ZP_19480330.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1574]
gi|430870358|ref|ZP_19483213.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1575]
gi|430958918|ref|ZP_19486782.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1576]
gi|431010111|ref|ZP_19489636.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1578]
gi|431193717|ref|ZP_19500224.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1620]
gi|431228335|ref|ZP_19501476.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1622]
gi|431259204|ref|ZP_19505381.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1623]
gi|431295498|ref|ZP_19507386.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1626]
gi|431368551|ref|ZP_19509365.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1627]
gi|431436396|ref|ZP_19513095.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1630]
gi|431503078|ref|ZP_19515314.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1634]
gi|431539169|ref|ZP_19517673.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1731]
gi|431626828|ref|ZP_19523067.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1904]
gi|431743437|ref|ZP_19532316.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2071]
gi|431745719|ref|ZP_19534558.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2134]
gi|431748772|ref|ZP_19537527.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2297]
gi|431754364|ref|ZP_19543027.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2883]
gi|431758843|ref|ZP_19547464.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3346]
gi|431766269|ref|ZP_19554762.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E4215]
gi|431766733|ref|ZP_19555194.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1321]
gi|431770348|ref|ZP_19558748.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1644]
gi|431772868|ref|ZP_19561205.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2369]
gi|431778282|ref|ZP_19566493.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E4389]
gi|431782362|ref|ZP_19570497.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E6012]
gi|431785253|ref|ZP_19573279.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E6045]
gi|68194219|gb|EAN08744.1| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70
region 4:Sigma-70 region 1.2 [Enterococcus faecium DO]
gi|257812203|gb|EEV40961.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,230,933]
gi|257816896|gb|EEV44224.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,502]
gi|257820742|gb|EEV47890.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,501]
gi|257826186|gb|EEV52812.1| RNA polymerase sigma-43 factor [Enterococcus faecium 1,231,410]
gi|260074783|gb|EEW63099.1| RNA polymerase sigma-43 factor [Enterococcus faecium C68]
gi|260077942|gb|EEW65648.1| RNA polymerase sigma-43 factor [Enterococcus faecium TC 6]
gi|289163078|gb|EFD10925.1| RNA polymerase sigma factor rpoD [Enterococcus faecium D344SRF]
gi|291589255|gb|EFF21065.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1071]
gi|291592333|gb|EFF23947.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1636]
gi|291595506|gb|EFF26816.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1679]
gi|291601048|gb|EFF31337.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1039]
gi|291604635|gb|EFF34120.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E1162]
gi|313588970|gb|EFR67815.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133a01]
gi|313591562|gb|EFR70407.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133B]
gi|313596157|gb|EFR75002.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133A]
gi|313600109|gb|EFR78952.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133C]
gi|313641279|gb|EFS05859.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0133a04]
gi|313643734|gb|EFS08314.1| RNA polymerase sigma factor RpoD [Enterococcus faecium TX0082]
gi|364091895|gb|EHM34318.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E4453]
gi|378938239|gb|AFC63311.1| RNA polymerase sigma factor RpoD [Enterococcus faecium Aus0004]
gi|388533520|gb|AFK58712.1| RNA polymerase sigma-43 factor [Enterococcus faecium DO]
gi|402918645|gb|EJX39313.1| RNA polymerase sigma factor RpoD [Enterococcus faecium V689]
gi|402923024|gb|EJX43360.1| RNA polymerase sigma factor RpoD [Enterococcus faecium S447]
gi|402925744|gb|EJX45851.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R501]
gi|402930275|gb|EJX49951.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R499]
gi|402934094|gb|EJX53483.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R496]
gi|402936283|gb|EJX55470.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R494]
gi|402937981|gb|EJX57025.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R497]
gi|402943243|gb|EJX61743.1| RNA polymerase sigma factor RpoD [Enterococcus faecium R446]
gi|402945793|gb|EJX64123.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1190]
gi|402947041|gb|EJX65273.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1986]
gi|402953044|gb|EJX70802.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1137]
gi|402953825|gb|EJX71506.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1140]
gi|402954367|gb|EJX71999.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1139]
gi|402963646|gb|EJX80498.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV99]
gi|402967402|gb|EJX83955.1| RNA polymerase sigma factor RpoD [Enterococcus faecium P1123]
gi|402971572|gb|EJX87837.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV69]
gi|402973467|gb|EJX89593.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV38]
gi|402977346|gb|EJX93169.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV26]
gi|402978850|gb|EJX94561.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV168]
gi|402984960|gb|EJY00216.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV161]
gi|402985281|gb|EJY00503.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV165]
gi|402990378|gb|EJY05251.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV1]
gi|402990785|gb|EJY05643.1| RNA polymerase sigma factor RpoD [Enterococcus faecium ERV102]
gi|403000162|gb|EJY14306.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E422]
gi|403001359|gb|EJY15420.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E417]
gi|403002356|gb|EJY16337.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C621]
gi|403006182|gb|EJY19847.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C1904]
gi|403010303|gb|EJY23689.1| RNA polymerase sigma factor RpoD [Enterococcus faecium C497]
gi|403013141|gb|EJY26268.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 514]
gi|403016367|gb|EJY29190.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 513]
gi|403026576|gb|EJY38539.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 510]
gi|403027342|gb|EJY39235.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 509]
gi|403035445|gb|EJY46833.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 504]
gi|403037666|gb|EJY48930.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 506]
gi|403039276|gb|EJY50439.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 503]
gi|404454544|gb|EKA01472.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD4E]
gi|404458200|gb|EKA04647.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD3E]
gi|404463859|gb|EKA09438.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD2E]
gi|404470756|gb|EKA15351.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD1E]
gi|410733922|gb|EKQ75844.1| RNA polymerase sigma factor RpoD [Enterococcus sp. GMD5E]
gi|425724336|gb|EKU87220.1| RNA polymerase sigma factor rpoD [Enterococcus durans FB129-CNAB-4]
gi|430439560|gb|ELA49896.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0045]
gi|430443756|gb|ELA53718.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0120]
gi|430446545|gb|ELA56213.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0164]
gi|430482863|gb|ELA59962.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0333]
gi|430483606|gb|ELA60674.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0269]
gi|430486296|gb|ELA63155.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0679]
gi|430488616|gb|ELA65278.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0680]
gi|430491329|gb|ELA67802.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E0688]
gi|430497141|gb|ELA73200.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1050]
gi|430536163|gb|ELA76540.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1185]
gi|430538834|gb|ELA79108.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1133]
gi|430541664|gb|ELA81809.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1258]
gi|430545230|gb|ELA85216.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1552]
gi|430548020|gb|ELA87925.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1392]
gi|430549213|gb|ELA89045.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1573]
gi|430553955|gb|ELA93629.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1574]
gi|430556603|gb|ELA96100.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1576]
gi|430559011|gb|ELA98393.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1575]
gi|430560606|gb|ELA99902.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1578]
gi|430572127|gb|ELB10993.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1620]
gi|430574637|gb|ELB13400.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1622]
gi|430577299|gb|ELB15904.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1623]
gi|430581588|gb|ELB20033.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1626]
gi|430584139|gb|ELB22489.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1627]
gi|430586993|gb|ELB25227.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1630]
gi|430587701|gb|ELB25922.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1634]
gi|430594432|gb|ELB32401.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1731]
gi|430603082|gb|ELB40625.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1904]
gi|430606869|gb|ELB44206.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2071]
gi|430609925|gb|ELB47097.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2134]
gi|430613098|gb|ELB50121.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2297]
gi|430619772|gb|ELB56591.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2883]
gi|430626970|gb|ELB63513.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E3346]
gi|430627045|gb|ELB63581.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E4215]
gi|430631968|gb|ELB68259.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1321]
gi|430635275|gb|ELB71371.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E1644]
gi|430637556|gb|ELB73564.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E2369]
gi|430643828|gb|ELB79531.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E4389]
gi|430647697|gb|ELB83138.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E6012]
gi|430647740|gb|ELB83179.1| RNA polymerase sigma factor rpoD [Enterococcus faecium E6045]
Length = 369
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 124 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 183
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 184 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 243
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 244 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLED 303
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 304 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 363
Query: 374 LKVYM 378
LK ++
Sbjct: 364 LKDFL 368
>gi|94263094|ref|ZP_01286913.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
gi|93456637|gb|EAT06745.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
Length = 540
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 143/238 (60%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+E++ R++++ LVVS+A Y G+GL L DLIQEG+IGL++ ++F RGYK STY
Sbjct: 300 QEAKNRLVQANLRLVVSVAKKYAGRGLQLLDLIQEGNIGLMKAVEKFEYRRGYKFSTYAT 359
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QA+ RAIA++ RTIR+P M + ++ + R+ R PT E+A+ L + V+
Sbjct: 360 WWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQRQHGREPTPDEMAQHLGVEVA 419
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ ++ + P+SLD V + + D I + P+ + ++ L+ +L+TLS
Sbjct: 420 KVKSVLKIAKEPLSLDTPVGNSNDSFLADFIEDTEAASPDEATIYENLQSNLRRVLKTLS 479
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
RE +LRL FGLD ++ +E+G +++RERIRQI AL KL+ N L +
Sbjct: 480 PREEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIEAKALKKLKHPARRNQLSSF 537
>gi|306836272|ref|ZP_07469254.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
gi|304567864|gb|EFM43447.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
Length = 492
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 253 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 312
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 313 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 372
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 373 KVMEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLS 432
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 433 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 491
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 157/241 (65%), Gaps = 5/241 (2%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+ ++ ++I + LVV+IA YQ + + DLIQEGS+GL RG ++F+P +GYK STY Y
Sbjct: 90 KRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAY 149
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA ++RTIRLP + + KI + LS++L R T +EIA+ L++ +
Sbjct: 150 WWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQQLGRSATPAEIAKALDLEPA 209
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELKELLQTL 318
+R + +R PISLD V D + +++ DE + P+ + ++LM+Q+L +LL L
Sbjct: 210 QIREFLSMSRQPISLDVRVGDNQDTELSELL--EDEGISPDNYITQELMRQDLHDLLAEL 267
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ ++ ++L L FGL +S +IG+ +++SRER+RQ+ AL++L++ +N+K Y+
Sbjct: 268 TPQQREVLSLRFGLQDGKELSLAKIGQRMNISRERVRQLEHQALSQLRRRR--SNVKEYI 325
Query: 379 V 379
V
Sbjct: 326 V 326
>gi|416134915|ref|ZP_11598376.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E4452]
gi|364092345|gb|EHM34726.1| RNA polymerase sigma factor RpoD [Enterococcus faecium E4452]
Length = 369
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 124 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 183
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 184 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 243
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 244 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLED 303
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 304 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 363
Query: 374 LKVYM 378
LK ++
Sbjct: 364 LKDFL 368
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 147/238 (61%), Gaps = 3/238 (1%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY YWW
Sbjct: 109 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 168
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA KSR IRLP + M+ K+ + LS+ + R PT SE+A+ + + V
Sbjct: 169 IRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTVSELAKYVELPEDDV 228
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ + + P+SL+ V D + D++ G E +P+ ++ M+ +L LL L +
Sbjct: 229 KDLMCKAGQPVSLETKVGDGEDTVLLDLLAGG-EDLPDEQIEMDCMRGDLHSLLHQLPDL 287
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYMV 379
+ +LR+ +G+DG P+S IGR+L +SR+R+R + L L++ + +N++ Y V
Sbjct: 288 QCRVLRMRYGMDGDEPMSLTGIGRVLGISRDRVRNLERDGLRGLRRLS--DNVEAYFV 343
>gi|357055215|ref|ZP_09116289.1| RNA polymerase sigma factor rpoD [Clostridium clostridioforme
2_1_49FAA]
gi|355383171|gb|EHG30257.1| RNA polymerase sigma factor rpoD [Clostridium clostridioforme
2_1_49FAA]
Length = 374
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 147/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++R+ S LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY W
Sbjct: 135 EARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 194
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + ++ + L + L R PT EIA L++ V
Sbjct: 195 WIRQAITRAIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARLDLPVER 254
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
V ++ ++ P+SL+ + + + D I + +P+ L+ ++L E+L TL+E
Sbjct: 255 VSEIMKMSQEPVSLETPIGEEEDSHLGDFIQDDNVLVPQDAAAFTLLHEQLMEVLLTLTE 314
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LRL FGLD P + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 315 REQKVLRLRFGLDDGRPRTLEEVGKQFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 372
>gi|260578861|ref|ZP_05846767.1| RNA polymerase principal sigma factor SigA [Corynebacterium
jeikeium ATCC 43734]
gi|258603008|gb|EEW16279.1| RNA polymerase principal sigma factor SigA [Corynebacterium
jeikeium ATCC 43734]
Length = 552
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 145/239 (60%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 313 RRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYVKGYKFSTYAT 372
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A ++I V
Sbjct: 373 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITVD 432
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 433 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLS 492
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 493 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 551
>gi|16803494|ref|NP_464979.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes EGD-e]
gi|46907682|ref|YP_014071.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
4b str. F2365]
gi|47092744|ref|ZP_00230530.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes str. 4b
H7858]
gi|47095405|ref|ZP_00233015.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes str. 1/2a
F6854]
gi|226224055|ref|YP_002758162.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|254824487|ref|ZP_05229488.1| RNA polymerase subunit sigma [Listeria monocytogenes FSL J1-194]
gi|254827742|ref|ZP_05232429.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
N3-165]
gi|254852080|ref|ZP_05241428.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
R2-503]
gi|254912128|ref|ZP_05262140.1| sigma 43 subunit of RNA polymerase [Listeria monocytogenes J2818]
gi|254932639|ref|ZP_05265998.1| RNA polymerase subunit sigma [Listeria monocytogenes HPB2262]
gi|254936456|ref|ZP_05268153.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes F6900]
gi|254994146|ref|ZP_05276336.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
J2-064]
gi|255029176|ref|ZP_05301127.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes LO28]
gi|255522085|ref|ZP_05389322.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
J1-175]
gi|284801841|ref|YP_003413706.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 08-5578]
gi|284994983|ref|YP_003416751.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 08-5923]
gi|315282349|ref|ZP_07870778.1| RNA polymerase sigma factor RpoD [Listeria marthii FSL S4-120]
gi|386043765|ref|YP_005962570.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes 10403S]
gi|386047106|ref|YP_005965438.1| RNA polymerase:subunit sigma [Listeria monocytogenes J0161]
gi|386050430|ref|YP_005968421.1| RNA polymerase:subunit sigma [Listeria monocytogenes FSL R2-561]
gi|386053707|ref|YP_005971265.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes Finland
1998]
gi|386732193|ref|YP_006205689.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 07PF0776]
gi|404281011|ref|YP_006681909.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2755]
gi|404283946|ref|YP_006684843.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2372]
gi|404286876|ref|YP_006693462.1| RNA polymerase sigma-A factor [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|404410753|ref|YP_006696341.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC5850]
gi|404413532|ref|YP_006699119.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC7179]
gi|405749798|ref|YP_006673264.1| RNA polymerase sigma-A factor [Listeria monocytogenes ATCC 19117]
gi|405752674|ref|YP_006676139.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2378]
gi|405755612|ref|YP_006679076.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2540]
gi|405758502|ref|YP_006687778.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2479]
gi|406704227|ref|YP_006754581.1| RNA polymerase sigma-A factor [Listeria monocytogenes L312]
gi|417316000|ref|ZP_12102658.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes J1816]
gi|424823215|ref|ZP_18248228.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes str. Scott
A]
gi|1710684|sp|P52331.1|RPOD_LISMO RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-43
gi|664756|gb|AAC43306.1| sigma 43 subunit of RNA polymerase [Listeria monocytogenes]
gi|16410883|emb|CAC99532.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes EGD-e]
gi|46880950|gb|AAT04248.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
4b str. F2365]
gi|47016226|gb|EAL07149.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
1/2a str. F6854]
gi|47018932|gb|EAL09679.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
4b str. H7858]
gi|225876517|emb|CAS05226.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes serotype
4b str. CLIP 80459]
gi|258600121|gb|EEW13446.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
N3-165]
gi|258605378|gb|EEW17986.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
R2-503]
gi|258609048|gb|EEW21656.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes F6900]
gi|284057403|gb|ADB68344.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 08-5578]
gi|284060450|gb|ADB71389.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 08-5923]
gi|293584198|gb|EFF96230.1| RNA polymerase subunit sigma [Listeria monocytogenes HPB2262]
gi|293590099|gb|EFF98433.1| sigma 43 subunit of RNA polymerase [Listeria monocytogenes J2818]
gi|293593725|gb|EFG01486.1| RNA polymerase subunit sigma [Listeria monocytogenes FSL J1-194]
gi|313614010|gb|EFR87725.1| RNA polymerase sigma factor RpoD [Listeria marthii FSL S4-120]
gi|328465497|gb|EGF36726.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes J1816]
gi|332311895|gb|EGJ24990.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes str. Scott
A]
gi|345534097|gb|AEO03538.1| RNA polymerase:subunit sigma [Listeria monocytogenes J0161]
gi|345536999|gb|AEO06439.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes 10403S]
gi|346424276|gb|AEO25801.1| RNA polymerase:subunit sigma [Listeria monocytogenes FSL R2-561]
gi|346646358|gb|AEO38983.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes Finland
1998]
gi|384390951|gb|AFH80021.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes 07PF0776]
gi|404218998|emb|CBY70362.1| RNA polymerase sigma-A factor [Listeria monocytogenes ATCC 19117]
gi|404221874|emb|CBY73237.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2378]
gi|404224812|emb|CBY76174.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2540]
gi|404227646|emb|CBY49051.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2755]
gi|404230579|emb|CBY51983.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC5850]
gi|404233448|emb|CBY54851.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2372]
gi|404236384|emb|CBY57786.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2479]
gi|404239231|emb|CBY60632.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC7179]
gi|404245805|emb|CBY04030.1| RNA polymerase sigma-A factor [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|406361257|emb|CBY67530.1| RNA polymerase sigma-A factor [Listeria monocytogenes L312]
gi|441471138|emb|CCQ20893.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes]
gi|441474266|emb|CCQ24020.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes N53-1]
gi|1093602|prf||2104269C RNA polymerase:SUBUNIT=sigma
Length = 374
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 146/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY W
Sbjct: 136 EAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATW 195
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 196 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEK 255
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I D T P +L+K++L+++L TL++
Sbjct: 256 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTD 315
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ + LK ++
Sbjct: 316 REENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
>gi|355670644|ref|ZP_09057391.1| RNA polymerase sigma factor rpoD [Clostridium citroniae WAL-17108]
gi|354816081|gb|EHF00670.1| RNA polymerase sigma factor rpoD [Clostridium citroniae WAL-17108]
Length = 374
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 147/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++R+ S LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY W
Sbjct: 135 EARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 194
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI R+IA+++RTIR+P M + ++ + L + L R PT EIA +++ V
Sbjct: 195 WIRQAITRSIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARVDLPVER 254
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
V ++ ++ P+SL+ + + + D I + +P+ L+ ++L E+L TL+E
Sbjct: 255 VSEILKMSQEPVSLETPIGEEEDSHLVDFIQDDNVLVPQDAAAFTLLHEQLMEVLLTLTE 314
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LRL FGLD P + +E+GR S++RERIRQI AL KL+ + LK Y+
Sbjct: 315 REQKVLRLRFGLDDGRPRTLEEVGRQFSVTRERIRQIEAKALRKLRHPSRSKKLKDYL 372
>gi|289434736|ref|YP_003464608.1| RNA polymerase sigma factor RpoD [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|422419057|ref|ZP_16496012.1| RNA polymerase sigma factor RpoD [Listeria seeligeri FSL N1-067]
gi|289170980|emb|CBH27522.1| RNA polymerase sigma factor RpoD [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|313633237|gb|EFS00106.1| RNA polymerase sigma factor RpoD [Listeria seeligeri FSL N1-067]
Length = 374
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 129 RIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEE 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 249 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ +
Sbjct: 309 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 368
Query: 374 LKVYM 378
LK ++
Sbjct: 369 LKDFL 373
>gi|300781032|ref|ZP_07090886.1| RNA polymerase sigma factor rpoD [Corynebacterium genitalium ATCC
33030]
gi|300532739|gb|EFK53800.1| RNA polymerase sigma factor rpoD [Corynebacterium genitalium ATCC
33030]
Length = 536
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 297 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 356
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 357 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 416
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 417 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLS 476
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 477 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 535
>gi|383823557|ref|ZP_09978747.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
gi|383338836|gb|EID17195.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
Length = 527
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 283 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 342
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 343 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 402
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 403 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 462
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 463 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 521
Query: 374 LKVYM 378
L+ Y+
Sbjct: 522 LRDYL 526
>gi|145224520|ref|YP_001135198.1| RNA polymerase sigma factor [Mycobacterium gilvum PYR-GCK]
gi|315444851|ref|YP_004077730.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
gi|145217006|gb|ABP46410.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
gi|315263154|gb|ADT99895.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 488
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 153/248 (61%), Gaps = 3/248 (1%)
Query: 133 YKILCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
Y +C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +G
Sbjct: 241 YMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 300
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
YK STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A
Sbjct: 301 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 360
Query: 252 EMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQEL 311
+ ++I V + R PISLD + D G + D I + + V L++ +L
Sbjct: 361 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 420
Query: 312 KELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
+ +L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 421 QSVLETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSR 479
Query: 371 LNNLKVYM 378
L+ Y+
Sbjct: 480 SQVLRDYL 487
>gi|16800559|ref|NP_470827.1| RNA polymerase sigma factor RpoD [Listeria innocua Clip11262]
gi|116872885|ref|YP_849666.1| RNA polymerase sigma factor RpoD [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|217964400|ref|YP_002350078.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes HCC23]
gi|290894216|ref|ZP_06557185.1| rpoD protein [Listeria monocytogenes FSL J2-071]
gi|347548840|ref|YP_004855168.1| putative RNA polymerase sigma factor RpoD [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|386008225|ref|YP_005926503.1| RNA polymerase sigma factor [Listeria monocytogenes L99]
gi|386026826|ref|YP_005947602.1| RNA polymerase, sigma-70 (primary) subunit [Listeria monocytogenes
M7]
gi|404407892|ref|YP_006690607.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2376]
gi|422415957|ref|ZP_16492914.1| RNA polymerase sigma factor RpoD [Listeria innocua FSL J1-023]
gi|422809535|ref|ZP_16857946.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
J1-208]
gi|20140102|sp|Q92BQ6.1|RPOD_LISIN RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-43
gi|16413964|emb|CAC96722.1| RNA polymerase sigma factor RpoD [Listeria innocua Clip11262]
gi|116741763|emb|CAK20887.1| RNA polymerase sigma factor RpoD (Sigma-A) [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|217333670|gb|ACK39464.1| RNA polymerase sigma factor RpoD (Sigma-A) (Sigma-43) [Listeria
monocytogenes HCC23]
gi|290556213|gb|EFD89758.1| rpoD protein [Listeria monocytogenes FSL J2-071]
gi|307571035|emb|CAR84214.1| RNA polymerase sigma factor [Listeria monocytogenes L99]
gi|313623755|gb|EFR93895.1| RNA polymerase sigma factor RpoD [Listeria innocua FSL J1-023]
gi|336023407|gb|AEH92544.1| RNA polymerase, sigma-70 (primary) subunit [Listeria monocytogenes
M7]
gi|346981911|emb|CBW85892.1| Putative RNA polymerase sigma factor RpoD [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|378753149|gb|EHY63734.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
J1-208]
gi|404242041|emb|CBY63441.1| RNA polymerase sigma-A factor [Listeria monocytogenes SLCC2376]
Length = 374
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 129 RIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEE 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 249 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ +
Sbjct: 309 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 368
Query: 374 LKVYM 378
LK ++
Sbjct: 369 LKDFL 373
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 221 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 280
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 281 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPI 340
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V LM+ +L +LQTLSEREA ++RL FGL
Sbjct: 341 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLMQDQLTSVLQTLSEREAGVVRLRFGL 400
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 401 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 446
>gi|357021629|ref|ZP_09083860.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
gi|356479377|gb|EHI12514.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
Length = 504
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ E ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 260 ICRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 319
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 320 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 379
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 380 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 439
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 440 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 498
Query: 374 LKVYM 378
L+ Y+
Sbjct: 499 LRDYL 503
>gi|163790450|ref|ZP_02184881.1| RNA polymerase sigma factor RpoD [Carnobacterium sp. AT7]
gi|159874354|gb|EDP68427.1| RNA polymerase sigma factor RpoD [Carnobacterium sp. AT7]
Length = 373
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 151/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ ++G+K
Sbjct: 128 KIEEGDQEARQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYKKGFK 187
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 247
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 248 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPAENAAYELLKEQLED 307
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +++G++ ++RERIRQI AL KL+ +
Sbjct: 308 VLDTLTDREENVLRLRFGLDDGRNRTLEDVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 367
Query: 374 LKVYM 378
LK ++
Sbjct: 368 LKDFL 372
>gi|94266972|ref|ZP_01290621.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
gi|93452327|gb|EAT02958.1| Sigma-70-like protein [delta proteobacterium MLMS-1]
Length = 353
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 143/238 (60%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+E++ R++++ LVVS+A Y G+GL L DLIQEG+IGL++ ++F RGYK STY
Sbjct: 113 QEAKNRLVQANLRLVVSVAKKYAGRGLQLLDLIQEGNIGLMKAVEKFEYRRGYKFSTYAT 172
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QA+ RAIA++ RTIR+P M + ++ + R+ R PT E+A+ L + V+
Sbjct: 173 WWIRQAVTRAIADQGRTIRIPVHMIDTINRMLKGAKEFQRQHGREPTPDEMAQHLGVEVA 232
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ ++ + P+SLD V + + D I + P+ + ++ L+ +L+TLS
Sbjct: 233 KVKSVLKIAKEPLSLDTPVGNSNDSFLADFIEDTEAASPDEATIYENLQSNLRRVLKTLS 292
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
RE +LRL FGLD ++ +E+G +++RERIRQI AL KL+ N L +
Sbjct: 293 PREEMVLRLRFGLDTAMDLTLEEVGENFAVTRERIRQIEAKALKKLKHPARRNQLSSF 350
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 330 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 389
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 390 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 449
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 450 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 509
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 510 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 568
Query: 374 LKVYM 378
L+ Y+
Sbjct: 569 LRDYL 573
>gi|422412943|ref|ZP_16489902.1| RNA polymerase sigma factor RpoD [Listeria innocua FSL S4-378]
gi|313618909|gb|EFR90770.1| RNA polymerase sigma factor RpoD [Listeria innocua FSL S4-378]
Length = 374
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 146/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY W
Sbjct: 136 EAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATW 195
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 196 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEK 255
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I D T P +L+K++L+++L TL++
Sbjct: 256 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTD 315
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ + LK ++
Sbjct: 316 REENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 332 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 391
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 392 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 451
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 452 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 511
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 512 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 570
Query: 374 LKVYM 378
L+ Y+
Sbjct: 571 LRDYL 575
>gi|269792833|ref|YP_003317737.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100468|gb|ACZ19455.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 387
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 150/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++ ++E+++ + LVVSIA Y G+G+ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 147 DKRAKEKLVEANLRLVVSIAKKYIGRGMLFLDLIQEGNLGLIRAVEKFDYRKGYKFSTYA 206
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + VL +RL R P+ EIA+ + + V
Sbjct: 207 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRISRVLVQRLGREPSAEEIAQEMGVTV 266
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
V + + P+SL+ + + + D + D P+ Q+++++L+E+L+ L
Sbjct: 267 DRVEEIQKIAQEPVSLETPIGEEEDSQLGDFLEDKDLPSPDEAAANQILREQLEEMLEDL 326
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGL+ + +E+GR ++RERIRQI AL KL+ + L+ ++
Sbjct: 327 TDREKEVLRLRFGLEDGHSHTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKRLRDFL 386
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 143/228 (62%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 113 RRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 172
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ + R PT SE+AE + +
Sbjct: 173 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELPEE 232
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D G T + +E +P V+ MK +L+ LL+ L
Sbjct: 233 EVKDLMCRARQPMSLEMKVGD-GDETELLELLAGEEELPSEKVEVDCMKGDLRTLLEKLP 291
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
E + +LR+ +G+DG P++ IGR+L +SR+R+R + L L+Q
Sbjct: 292 ELQGRVLRMRYGIDGGEPMNLTGIGRILDISRDRVRNLERHGLNGLRQ 339
>gi|375092093|ref|ZP_09738378.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
gi|374561859|gb|EHR33196.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
Length = 675
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 141/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +RG+K STY WWI+QAI RAIA+
Sbjct: 447 LVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVEKFDYKRGFKFSTYATWWIRQAITRAIAD 506
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R PT+ EIA+ +NI V VR + + P+
Sbjct: 507 QARTIRIPVHMVETINKLVRVQRQLVQELGRTPTNEEIAKEMNIDVDKVREVRKIAQEPV 566
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I P+ + ++K++L+++L +LSERE ++ L FGL
Sbjct: 567 SLEAPIGEEDDSHLGDFIEDERALAPDEAANQTMLKEQLEDILSSLSEREKRVIELRFGL 626
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
P + +++G+ ++RERIRQI A+ KL++ + ++ Y+
Sbjct: 627 IDGVPKTLEDVGKEFDVTRERIRQIEAKAIRKLKRPGKGDKIRDYL 672
>gi|302866072|ref|YP_003834709.1| sigma-70 family RNA polymerase [Micromonospora aurantiaca ATCC
27029]
gi|315502628|ref|YP_004081515.1| RpoD subfamily RNA polymerase sigma-70 subunit [Micromonospora sp.
L5]
gi|302568931|gb|ADL45133.1| RNA polymerase sigma factor, sigma-70 family [Micromonospora
aurantiaca ATCC 27029]
gi|315409247|gb|ADU07364.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Micromonospora
sp. L5]
Length = 328
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/244 (40%), Positives = 142/244 (58%), Gaps = 1/244 (0%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
I + R +++ ++ + LVVSIA Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 83 IAAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 142
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M V ++ LS L R PT SE+A L
Sbjct: 143 STYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRVRRELSVTLGREPTVSEVATAL 202
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPD-ETMPERMVQKQLMKQELKE 313
I V I R P+SLD AV + G + D + D T P ++ E++
Sbjct: 203 EIPEFQVIELISYDREPVSLDQAVGEDGESALGDFVAAVDPRTEPGDAATNGELRNEVRI 262
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TLS+RE ++RL FGLD + E+GR LSRERIRQI + L KL+ N
Sbjct: 263 VLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTLLKLRDPERANR 322
Query: 374 LKVY 377
L+ Y
Sbjct: 323 LEAY 326
>gi|347534447|ref|YP_004841117.1| RNA polymerase sigma factor rpoD [Lactobacillus sanfranciscensis
TMW 1.1304]
gi|345504503|gb|AEN99185.1| RNA polymerase sigma factor rpoD [Lactobacillus sanfranciscensis
TMW 1.1304]
Length = 345
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 141/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI RAIA+
Sbjct: 119 LVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIAD 178
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R P SEI +++ S VR ++ ++ P+
Sbjct: 179 QARTIRIPVHMVETINKLIRVQRQLLQDLGRDPLPSEIGAEMDMPTSKVRNILKISQEPV 238
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I D T PE +L+K++L+ +L TL++RE ++LRL FGL
Sbjct: 239 SLETPIGEEDDSHLGDFIEDKDATSPEEHASYELLKEQLEGVLDTLTDREENVLRLRFGL 298
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +E+GR+ ++RERIRQI AL KL+ + LK ++
Sbjct: 299 DDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 344
>gi|298490007|ref|YP_003720184.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231925|gb|ADI63061.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 417
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 145/238 (60%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 177 QAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 236
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +S+ R PT ++A L++ +
Sbjct: 237 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPTLEDLAIELDMTPTQ 296
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L LL L+
Sbjct: 297 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDSITPEEMLMRESLQKDLHHLLADLTS 355
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 356 RERDVILMRFGLSDGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 413
>gi|365157895|ref|ZP_09354140.1| RNA polymerase sigma factor rpoD [Bacillus smithii 7_3_47FAA]
gi|363622565|gb|EHL73724.1| RNA polymerase sigma factor rpoD [Bacillus smithii 7_3_47FAA]
Length = 377
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 132 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYK 191
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI E
Sbjct: 192 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGEE 251
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 252 MDLSPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHEATSPSEHAAYELLKEQLED 311
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 312 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 371
Query: 374 LKVYM 378
LK ++
Sbjct: 372 LKDFL 376
>gi|302525743|ref|ZP_07278085.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434638|gb|EFL06454.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 476
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 250 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 309
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 310 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 369
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 370 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 429
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 430 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 475
>gi|427709818|ref|YP_007052195.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
gi|427362323|gb|AFY45045.1| RNA polymerase, sigma subunit, RpsC/SigC [Nostoc sp. PCC 7107]
Length = 416
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 145/238 (60%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+S+E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 176 QSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 235
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A L + S
Sbjct: 236 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEMTPSQ 295
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L+ LL L+
Sbjct: 296 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDSVTPEEMLMRESLQRDLQNLLADLTT 354
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 355 RERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 412
>gi|424714330|ref|YP_007015045.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes serotype
4b str. LL195]
gi|424013514|emb|CCO64054.1| RNA polymerase sigma factor rpoD [Listeria monocytogenes serotype
4b str. LL195]
Length = 383
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 138 RIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFK 197
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E
Sbjct: 198 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEE 257
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 258 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 317
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ +
Sbjct: 318 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 377
Query: 374 LKVYM 378
LK ++
Sbjct: 378 LKDFL 382
>gi|451944378|ref|YP_007465014.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
gi|451903765|gb|AGF72652.1| RNA polymerase sigma factor [Corynebacterium halotolerans YIM 70093
= DSM 44683]
Length = 517
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 278 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 337
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 338 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 397
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 398 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLTTLS 457
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 458 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 516
>gi|379736693|ref|YP_005330199.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
gi|378784500|emb|CCG04169.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
Length = 450
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 224 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 283
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 284 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPI 343
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V LM+ +L +LQTLSEREA ++RL FGL
Sbjct: 344 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLMQDQLTSVLQTLSEREAGVVRLRFGL 403
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 404 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 449
>gi|315303191|ref|ZP_07873849.1| RNA polymerase sigma factor RpoD [Listeria ivanovii FSL F6-596]
gi|313628434|gb|EFR96909.1| RNA polymerase sigma factor RpoD [Listeria ivanovii FSL F6-596]
Length = 386
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 141 RIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFK 200
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E
Sbjct: 201 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEE 260
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 261 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 320
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ +
Sbjct: 321 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 380
Query: 374 LKVYM 378
LK ++
Sbjct: 381 LKDFL 385
>gi|376251494|ref|YP_005138375.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC03]
gi|372112998|gb|AEX79057.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC03]
Length = 530
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 291 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 350
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 351 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 410
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 411 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 470
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 471 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 529
>gi|423100538|ref|ZP_17088245.1| RNA polymerase sigma factor RpoD [Listeria innocua ATCC 33091]
gi|370792762|gb|EHN60605.1| RNA polymerase sigma factor RpoD [Listeria innocua ATCC 33091]
Length = 382
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 137 RIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFK 196
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E
Sbjct: 197 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEE 256
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 257 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 316
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ +
Sbjct: 317 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 376
Query: 374 LKVYM 378
LK ++
Sbjct: 377 LKDFL 381
>gi|451338995|ref|ZP_21909521.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
gi|449418374|gb|EMD23965.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
Length = 466
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 240 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 299
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 300 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 359
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 360 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 419
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 420 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 465
>gi|384915839|ref|ZP_10016044.1| RNA polymerase sigma factor rpoD [Methylacidiphilum fumariolicum
SolV]
gi|384526701|emb|CCG91915.1| RNA polymerase sigma factor rpoD [Methylacidiphilum fumariolicum
SolV]
Length = 625
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 134/226 (59%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LV+SIA Y +GLS DLIQEG++GL++ ++F RGYK STY WWI+QAI R+IA+
Sbjct: 394 LVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIAD 453
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R PT EIAE + V +R I+ +HPI
Sbjct: 454 QARTIRIPVHMIETINKLMRVQKQLIQELGREPTPEEIAEETQMSVDRIRAIIKMAQHPI 513
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL V + T D I P M L++++++++L TL+ERE ++ FGL
Sbjct: 514 SLQAQVGESEDTTFGDFIEDKAAENPSEMTGYSLLREKIRDVLHTLTERERTVIEQRFGL 573
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
P + +E+G+ ++RERIRQI AL K++ L +LK ++
Sbjct: 574 LDGYPRTLEEVGKQFRVTRERIRQIEAKALRKMRHPTRLRHLKGFL 619
>gi|375291076|ref|YP_005125616.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 241]
gi|375293282|ref|YP_005127821.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae INCA
402]
gi|376243011|ref|YP_005133863.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae CDCE
8392]
gi|376245908|ref|YP_005136147.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC01]
gi|376284915|ref|YP_005158125.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 31A]
gi|376290613|ref|YP_005162860.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae C7
(beta)]
gi|376293415|ref|YP_005165089.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC02]
gi|419860975|ref|ZP_14383615.1| RNA polymerase sigma factor [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|371578430|gb|AEX42098.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 31A]
gi|371580747|gb|AEX44414.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 241]
gi|371582953|gb|AEX46619.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae INCA
402]
gi|372104009|gb|AEX67606.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae C7
(beta)]
gi|372106253|gb|AEX72315.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae CDCE
8392]
gi|372108538|gb|AEX74599.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC01]
gi|372110738|gb|AEX76798.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC02]
gi|387982659|gb|EIK56160.1| RNA polymerase sigma factor [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 526
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 287 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 346
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 347 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 406
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 407 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 466
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 467 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 525
>gi|354568141|ref|ZP_08987307.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353541106|gb|EHC10576.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 416
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 149/239 (62%), Gaps = 3/239 (1%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+S+E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 176 QSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 235
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A+ L + +
Sbjct: 236 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAQELEMTPTQ 295
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L+ LL L+
Sbjct: 296 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDCVTPEDMLMRESLQRDLQHLLADLTS 354
Query: 321 READILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL DGQ P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 355 RERDVILMRFGLADGQ-PYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 412
>gi|443325525|ref|ZP_21054216.1| RNA polymerase sigma factor, sigma-70 family [Xenococcus sp. PCC
7305]
gi|442794846|gb|ELS04242.1| RNA polymerase sigma factor, sigma-70 family [Xenococcus sp. PCC
7305]
Length = 294
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 152/255 (59%), Gaps = 8/255 (3%)
Query: 118 FLDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSI 177
LDK+ D L + KI+ + ++ +++++ LVVSIA YQ +GL+L DLIQEGSI
Sbjct: 39 LLDKK----DLVLEEKKIVQNGQRAKRKMVQANLRLVVSIAKKYQNRGLTLLDLIQEGSI 94
Query: 178 GLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVL 237
GL+RGA++F+P +GYK STY YWWI+QA+ RAIAN++R IRLP + + K+ + L
Sbjct: 95 GLMRGAEKFDPSKGYKFSTYSYWWIRQAMTRAIANQARIIRLPLHITQDINKVKKVARQL 154
Query: 238 SRRLRRMPTDSEIAEMLNIHVSTVR--LAIERTRHPISLDGAVTDRGCMTMQDIIPGPDE 295
S L R PTD EIA L+I V + L + R SL+ + + Q I D
Sbjct: 155 SLSLGRKPTDKEIAHELDIKVKRLNYLLQVARITDLTSLNRTIDENQTELGQ--ILADDS 212
Query: 296 TMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIR 355
P + K+ + +++ LL TLS ++ ++ L FGL+ ++ ++IG +SRER+R
Sbjct: 213 ASPTDFIAKEELNSQVRNLLHTLSPKQQKVITLRFGLNNGKTMTYEQIGSQCGISRERVR 272
Query: 356 QIRGIALTKLQQTNI 370
QI+ AL LQQ I
Sbjct: 273 QIKNKALKLLQQEAI 287
>gi|410582688|ref|ZP_11319794.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter
subterraneus DSM 13965]
gi|410505508|gb|EKP95017.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter
subterraneus DSM 13965]
Length = 432
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ ++I++ LVVSIA Y G+G+ DLIQEG++GL++ A++F+ +G+K
Sbjct: 187 RIEQGDEEAKRKLIQANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAAEKFDYRKGFK 246
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIA+
Sbjct: 247 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLVQELGREPTPEEIAKE 306
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ I VR ++ + P+SL+ + + + D I D P + L++++L++
Sbjct: 307 MGIEPEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDALAPAEAASQLLLREQLED 366
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE +LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 367 VLHTLTDREQKVLRLRFGLDDGRQRTLEEVGQIFGVTRERIRQIEAKALRKLRHPSRSKK 426
Query: 374 LKVYM 378
LK Y+
Sbjct: 427 LKDYL 431
>gi|160937106|ref|ZP_02084469.1| hypothetical protein CLOBOL_01996 [Clostridium bolteae ATCC
BAA-613]
gi|158440007|gb|EDP17755.1| hypothetical protein CLOBOL_01996 [Clostridium bolteae ATCC
BAA-613]
Length = 378
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 147/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++R+ S LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY W
Sbjct: 139 EARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 198
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + ++ + L + L R PT EIA L++ V
Sbjct: 199 WIRQAITRAIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARLDLPVER 258
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
V ++ ++ P+SL+ + + + D I + +P+ L+ ++L E+L TL+E
Sbjct: 259 VSEIMKMSQEPVSLETPIGEEEDSHLGDFIQDDNVLVPQDAAAFTLLHEQLMEVLLTLTE 318
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LRL FGLD P + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 319 REQKVLRLRFGLDDGRPRTLEEVGKQFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 376
>gi|406984762|gb|EKE05675.1| hypothetical protein ACD_19C00182G0003 [uncultured bacterium]
Length = 359
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 145/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++ +++++ S LVVSIA Y G+GLSL DLIQEG+ GL+R ++++ +G+K STY
Sbjct: 119 DKRAKDKLTESNLRLVVSIAKKYIGRGLSLLDLIQEGNQGLIRAVEKYDWRKGFKFSTYA 178
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EI + +
Sbjct: 179 TWWIRQAITRAIADQARTIRIPVHMVETINKLYRISRRLMQELGREPTPEEIGAEVELTA 238
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR + + SL+ V + + D IP + P KQL+K L E+L TL
Sbjct: 239 DRVREIFKIAQETTSLEAPVGEDQESILGDFIPDESQLSPVDQASKQLLKDHLDEVLGTL 298
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+EREA +L+L FGL+G ++ +E+G++ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 299 TEREAKVLKLRFGLEGTKQMTLEEVGKVFGVTRERIRQIEAKALRKLKHPSRRKKLQDYL 358
>gi|336054000|ref|YP_004562287.1| RNA polymerase sigma factor [Lactobacillus kefiranofaciens ZW3]
gi|333957377|gb|AEG40185.1| RNA polymerase sigma factor [Lactobacillus kefiranofaciens ZW3]
Length = 370
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 151/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G+S DLIQEG++GL++ +F+ G+K
Sbjct: 125 RIENGDEEAKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVDKFDYRLGFK 184
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 185 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 244
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+N+ + VR ++ + P+SL+ + + + D I + T PE+ +++K++L++
Sbjct: 245 MNMPTNKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDKEATSPEQHASYEMLKEQLEQ 304
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + +
Sbjct: 305 VLETLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSSQ 364
Query: 374 LKVYM 378
L +M
Sbjct: 365 LHDFM 369
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 144/237 (60%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YWW
Sbjct: 177 AKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 236
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A L++ R PT +IA L + V
Sbjct: 237 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLAQEKGRTPTIEDIALELEMTAPQV 296
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + D++ D PE ++ ++ + ++L++LL L++R
Sbjct: 297 REVLLRVPRSVSLETKVGKEKDTELGDLLEN-DSISPEELLMREALHRDLQQLLADLTDR 355
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D++ + FGL S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 356 ERDVILMRFGLGDGHCYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNRVRDYL 412
>gi|428300095|ref|YP_007138401.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
gi|428236639|gb|AFZ02429.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 6303]
Length = 442
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 144/238 (60%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+S+E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 202 QSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 261
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A L + +
Sbjct: 262 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAVELEMTPTA 321
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L LL L+
Sbjct: 322 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDSVTPEEMLMRESLQRDLHHLLSDLTT 380
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 381 RERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 438
>gi|25028360|ref|NP_738414.1| RNA polymerase sigma factor [Corynebacterium efficiens YS-314]
gi|23493645|dbj|BAC18614.1| sigma factor SigA [Corynebacterium efficiens YS-314]
Length = 506
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 267 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 326
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+++ ++I
Sbjct: 327 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEE 386
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TLS
Sbjct: 387 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLS 446
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 447 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 505
>gi|123967051|ref|YP_001012132.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9515]
gi|123201417|gb|ABM73025.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9515]
Length = 333
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 146/238 (61%), Gaps = 3/238 (1%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY YWW
Sbjct: 98 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 157
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA KSR IRLP + M+ K+ + LS+ + R PT SE+A+ + + V
Sbjct: 158 IRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTISELAKYVELPEDDV 217
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ + + P+SL+ V D + D++ G E +P+ ++ M+ +L LL L +
Sbjct: 218 KDLMCKAGQPVSLETKVGDGEDTVLLDLLAG-GEDLPDEQIEMDCMRGDLHSLLHQLPDL 276
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYMV 379
+ +LR+ +G+DG P+S IGR+L +SR+R+R + L L++ + N++ Y V
Sbjct: 277 QCRVLRMRYGMDGDEPMSLTGIGRVLGISRDRVRNLERDGLRGLRRLS--ENVEAYFV 332
>gi|317132028|ref|YP_004091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Ethanoligenens
harbinense YUAN-3]
gi|315470007|gb|ADU26611.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ethanoligenens
harbinense YUAN-3]
Length = 372
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 141/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY WWI+QAI RAIA+
Sbjct: 146 LVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIAD 205
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R P EIAE++ + V VR ++ + P+
Sbjct: 206 QARTIRIPVHMVETINKVVRVERQLLQELGRQPQAEEIAELMGMSVDKVREIMKVAQEPV 265
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D IP D P L+K++L ++L+TL++REA +LRL FGL
Sbjct: 266 SLETPIGEEEDSHLGDFIPDDDAPAPAEAASHTLLKEQLGDVLKTLTQREAKVLRLRFGL 325
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D P + +E+GR +++RERIRQI AL KL+ + LK ++
Sbjct: 326 DDGRPRTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 371
>gi|358445404|ref|ZP_09156014.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608850|emb|CCE54263.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 472
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 233 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 292
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 293 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 352
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 353 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLS 412
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 413 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 471
>gi|429205294|ref|ZP_19196571.1| RNA polymerase sigma factor RpoD [Lactobacillus saerimneri 30a]
gi|428146366|gb|EKW98605.1| RNA polymerase sigma factor RpoD [Lactobacillus saerimneri 30a]
Length = 371
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 146/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 132 DEEAKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYA 191
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EI +N+
Sbjct: 192 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPVPEEIGAEMNMPT 251
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T P +L+K++L+ +L TL
Sbjct: 252 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLENVLDTL 311
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 312 TDREENVLRLRFGLDDGRTRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 371
>gi|425043807|ref|ZP_18448009.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 511]
gi|403017850|gb|EJY30573.1| RNA polymerase sigma factor RpoD [Enterococcus faecium 511]
Length = 369
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 124 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 183
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 184 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 243
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 244 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLED 303
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 304 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFVVTRERIRQIEAKALRKLRHPSRSKQ 363
Query: 374 LKVYM 378
LK ++
Sbjct: 364 LKDFL 368
>gi|352518192|ref|YP_004887509.1| RNA polymerase sigma factor RpoD [Tetragenococcus halophilus NBRC
12172]
gi|348602299|dbj|BAK95345.1| RNA polymerase sigma factor RpoD [Tetragenococcus halophilus NBRC
12172]
Length = 368
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 123 KIEEGDQEAKQRLAEANLRLVVSIAKRYIGRGMQFLDLIQEGNMGLMKAVEKFDHRKGFK 182
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 242
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 243 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 302
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FG+D + +E+GR+ ++RERIRQI AL KL+ +
Sbjct: 303 VLDTLTDREENVLRLRFGIDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 374 LKVYM 378
LK ++
Sbjct: 363 LKDFL 367
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 141/225 (62%), Gaps = 3/225 (1%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK STY YWW
Sbjct: 101 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 160
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA ++RTIRLP + + KI L + L R PT SEIA+ L + S +
Sbjct: 161 IRQAITRAIAQQARTIRLPIHITEKLNKIKRVQRELIQSLGRSPTPSEIAQALELEPSQI 220
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDET-MPERMVQKQLMKQELKELLQTLSE 320
R + RHPISLD V D +Q+++ DET P+ + +L++Q++ LL LSE
Sbjct: 221 REYLLMARHPISLDLRVGDNQDTELQELL--EDETSSPDDYITGELLRQDINTLLAELSE 278
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
++ +L L FGL+ +S ++G L LSRER+RQ+ AL L
Sbjct: 279 QQRRVLVLRFGLEDGKEMSLAKVGDKLQLSRERVRQLEHQALAFL 323
>gi|75907387|ref|YP_321683.1| RNA polymerase sigma factor SigC [Anabaena variabilis ATCC 29413]
gi|75701112|gb|ABA20788.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena variabilis ATCC
29413]
Length = 416
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+S+E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 176 QSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 235
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A L++ +
Sbjct: 236 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQ 295
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L+ LL L+
Sbjct: 296 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDGVTPEEMLMRESLQRDLQHLLADLTS 354
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 355 RERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 412
>gi|340616773|ref|YP_004735226.1| RNA polymerase sigma factor rpoD [Zobellia galactanivorans]
gi|339731570|emb|CAZ94835.1| RNA polymerase sigma factor rpoD [Zobellia galactanivorans]
Length = 287
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 151/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + RMP+ EIA+ L++ V V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQAHERMPSAEEIAKELDMTVEDVKQ 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + D + D++ + P++ + + ++ E++ L+TL+ REA
Sbjct: 172 SLKNSGRHVSMDAPLIDGEDSNLYDVLRSGESPNPDKELLHESLRTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL GQ ++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLAGQHSMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|222528719|ref|YP_002572601.1| RpoD subfamily RNA polymerase sigma-70 factor [Caldicellulosiruptor
bescii DSM 6725]
gi|222455566|gb|ACM59828.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor bescii DSM 6725]
Length = 417
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GLL+ ++F+ +GYK STY
Sbjct: 177 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYA 236
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + R PT EIA+ +N+ V
Sbjct: 237 TWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPV 296
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D IP D P ++K++L E+L +L
Sbjct: 297 EKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSL 356
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +L+L FGL+ + +E+G+ +++RERIRQI AL KL+ + LK ++
Sbjct: 357 NEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416
>gi|108805110|ref|YP_645047.1| RNA polymerase sigma-28 subunit [Rubrobacter xylanophilus DSM 9941]
gi|108766353|gb|ABG05235.1| RNA polymerase, sigma 28 subunit [Rubrobacter xylanophilus DSM
9941]
Length = 366
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 142/242 (58%), Gaps = 2/242 (0%)
Query: 137 CKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLST 196
CK S+++++ + LVVSIA Y+ +G+S DLIQEG+IGL+R A++F+ +G+K ST
Sbjct: 126 CKR--SKDKLVEANLRLVVSIAKKYRNRGVSFLDLIQEGNIGLIRAAEKFDYRKGFKFST 183
Query: 197 YVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNI 256
Y WWI+QAI RAIA+K RTIR+P M V K +++ L R PTD E+AE L +
Sbjct: 184 YATWWIRQAITRAIADKGRTIRIPVHMVEKVNKYHRTQRRMTQALGREPTDEEVAEELGV 243
Query: 257 HVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQ 316
V V E ++ ISL+ V D ++ D + P V + L+K L+E L
Sbjct: 244 PVEEVLRLQEISQRSISLETPVGDDESSSLGDFLEDASAVTPTDAVSESLLKLHLREALD 303
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKV 376
L ERE I+ + FG+ P + +E+GR ++RER+RQI+ L L++ NL+
Sbjct: 304 ELPERERQIIEMRFGMKDDRPRTLEEVGREFDITRERVRQIQMKTLNLLREQRRTQNLRE 363
Query: 377 YM 378
Y+
Sbjct: 364 YL 365
>gi|376287924|ref|YP_005160490.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae BH8]
gi|371585258|gb|AEX48923.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae BH8]
Length = 526
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 287 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 346
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 347 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 406
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 407 KVLGIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 466
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 467 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 525
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/234 (41%), Positives = 145/234 (61%), Gaps = 1/234 (0%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K L R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK
Sbjct: 92 KKLQSGRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYK 151
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ + R PT SE+AE
Sbjct: 152 FSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEF 211
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + V+ + R R P+SL+ V D G T + +E +P V+ MK +L+
Sbjct: 212 VELPEEEVKDLMCRARQPMSLEMKVGD-GDETELLELLAGEEELPSEKVEVDCMKGDLRT 270
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
LL+ L E + +LR+ +G+DG P++ IGR+L +SR+R+R + L L+Q
Sbjct: 271 LLEKLPELQGRVLRMRYGIDGGEPMNLTGIGRILDISRDRVRNLERHGLNGLRQ 324
>gi|385682368|ref|ZP_10056296.1| RNA polymerase sigma factor [Amycolatopsis sp. ATCC 39116]
Length = 447
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 221 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 280
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 281 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 340
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 341 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 400
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 401 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 446
>gi|328957491|ref|YP_004374877.1| RNA polymerase sigma factor RpoD [Carnobacterium sp. 17-4]
gi|328673815|gb|AEB29861.1| RNA polymerase sigma factor RpoD [Carnobacterium sp. 17-4]
Length = 373
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 151/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ ++G+K
Sbjct: 128 KIEEGDQEARQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYKKGFK 187
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 247
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 248 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPAENAAYELLKEQLED 307
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +++G++ ++RERIRQI AL KL+ +
Sbjct: 308 VLDTLTDREENVLRLRFGLDDGRNRTLEDVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 367
Query: 374 LKVYM 378
LK ++
Sbjct: 368 LKDFL 372
>gi|296117756|ref|ZP_06836340.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
gi|295969487|gb|EFG82728.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
Length = 471
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 232 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 291
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 292 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 351
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 352 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLS 411
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 412 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 470
>gi|255026189|ref|ZP_05298175.1| RNA polymerase sigma factor RpoD [Listeria monocytogenes FSL
J2-003]
Length = 361
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 116 RIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFK 175
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E
Sbjct: 176 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEE 235
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 236 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 295
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ +
Sbjct: 296 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 355
Query: 374 LKVYM 378
LK ++
Sbjct: 356 LKDFL 360
>gi|284990384|ref|YP_003408938.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284063629|gb|ADB74567.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 429
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 203 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 262
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 263 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPI 322
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V LM+ +L +LQTLSEREA ++RL FGL
Sbjct: 323 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLMQDQLTSVLQTLSEREAGVVRLRFGL 382
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 383 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 428
>gi|72382695|ref|YP_292050.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|124026414|ref|YP_001015529.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|72002545|gb|AAZ58347.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus str. NATL2A]
gi|123961482|gb|ABM76265.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 313
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 145/228 (63%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++++ LVVS+A YQGKGL L DL+QEGS+GL R ++F+P RGYK STY +
Sbjct: 76 RRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKFDPTRGYKFSTYAF 135
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q++ RAIA +SRTIRLP ++ +A I + + L+ +L MP+ EIAE + I +
Sbjct: 136 WWIRQSMTRAIACQSRTIRLPVHLSERLATIRKVSLDLAHKLGAMPSRIEIAEAMEIELE 195
Query: 260 TVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ + + SLD V D G + D+I P V++++ +++L L L
Sbjct: 196 ELDSILRQALTTSSLDAPVNGDEGRSFLGDLIADGSGEEPLDKVEQKIHQEQLGRWLSHL 255
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
SE+E ++RL FGL+G + EIGRLL +SRER+RQ+ AL KL+
Sbjct: 256 SEQEQHVIRLRFGLEGNERHTLAEIGRLLQVSRERVRQVELKALRKLR 303
>gi|258653895|ref|YP_003203051.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nakamurella
multipartita DSM 44233]
gi|258557120|gb|ACV80062.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nakamurella
multipartita DSM 44233]
Length = 448
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 222 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 281
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 282 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPI 341
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 342 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQAVLQTLSEREAGVVRLRFGL 401
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 402 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 447
>gi|423350088|ref|ZP_17327741.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
gi|404387950|gb|EJZ83041.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
Length = 573
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 154/264 (58%), Gaps = 6/264 (2%)
Query: 121 KENGELDYNL---VKYK---ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQE 174
KE G+ D L VK I R+++ ++ + LVVS+A Y G+G++ DLIQE
Sbjct: 309 KERGDKDAKLSPAVKRDMRAIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQE 368
Query: 175 GSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEAN 234
G++GL+R ++F+ +GYK STY WWI+QAI RA+A+++RTIR+P M ++ K+
Sbjct: 369 GNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQ 428
Query: 235 NVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPD 294
L + L R PT E+A ++I V + R PISLD + D G + D I +
Sbjct: 429 RELLQDLGREPTPQELAREMDITEDKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSE 488
Query: 295 ETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERI 354
+ V L++ +L+++L TLSEREA ++RL FGL P + EIG++ ++RERI
Sbjct: 489 AVVAVDAVSFTLLQDQLQDVLTTLSEREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERI 548
Query: 355 RQIRGIALTKLQQTNILNNLKVYM 378
RQI ++KL+ + L+ Y+
Sbjct: 549 RQIESKTMSKLRHPSRSQVLRDYL 572
>gi|225388598|ref|ZP_03758322.1| hypothetical protein CLOSTASPAR_02334 [Clostridium asparagiforme
DSM 15981]
gi|225045346|gb|EEG55592.1| hypothetical protein CLOSTASPAR_02334 [Clostridium asparagiforme
DSM 15981]
Length = 405
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 145/232 (62%), Gaps = 2/232 (0%)
Query: 137 CKE--RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
C E E+ +R++ + LVVSIA Y G+G+S DL+QEG+IGL++ ++F+ E+GY+L
Sbjct: 161 CAEGDEEAGKRLVEANLRLVVSIAKRYTGRGMSFLDLVQEGNIGLMKAVEKFDYEKGYRL 220
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WW+KQAI RA+A+++RTIRLP M V KI LS +L R P++ E+AE +
Sbjct: 221 STYATWWVKQAITRALADQARTIRLPVHMVEAVNKIRRTQRDLSVQLGRDPSNRELAEAV 280
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+ V I+ + +SL+ V D ++ D + E + L+++E+ +
Sbjct: 281 GMTEKRVEELIQTSGDTVSLETPVGDEDGSSLGDFVADNAGDSTEDQAENVLLREEIDSM 340
Query: 315 LQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
LQ L+ERE +++L FGL+ P++ +E+GR +++RERIRQI AL KL+
Sbjct: 341 LQGLNERERQVIKLRFGLENGRPLTLEEVGRQFNVTRERIRQIETAALRKLR 392
>gi|359771702|ref|ZP_09275148.1| RNA polymerase sigma factor SigA [Gordonia effusa NBRC 100432]
gi|359311138|dbj|GAB17926.1| RNA polymerase sigma factor SigA [Gordonia effusa NBRC 100432]
Length = 476
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 250 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 309
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 310 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 369
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 370 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 429
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 430 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 475
>gi|17229184|ref|NP_485732.1| RNA polymerase sigma factor SigC [Nostoc sp. PCC 7120]
gi|20141790|sp|Q03066.2|RPSC_ANASP RecName: Full=RNA polymerase sigma-C factor
gi|17135512|dbj|BAB78058.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+S+E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 176 QSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 235
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A L++ +
Sbjct: 236 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQ 295
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L+ LL L+
Sbjct: 296 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDGVTPEEMLMRESLQRDLQHLLADLTS 354
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 355 RERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 412
>gi|383831200|ref|ZP_09986289.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463853|gb|EID55943.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 468
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +G+K STY WWI+QAI RA+A+
Sbjct: 242 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMAD 301
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 302 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 361
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 362 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 421
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 422 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 467
>gi|320537364|ref|ZP_08037319.1| RNA polymerase sigma factor RpoD [Treponema phagedenis F0421]
gi|320145829|gb|EFW37490.1| RNA polymerase sigma factor RpoD [Treponema phagedenis F0421]
Length = 604
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+++++++I + LVVSIA Y +GL DL+QEG+IGL++ ++F +GYK STY
Sbjct: 364 KKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYAT 423
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI R+I++++RTIR+P M + K+A + L ++L R PTD EIA L V
Sbjct: 424 WWIRQAITRSISDQARTIRVPVHMIEQINKVARESRQLLQKLGRDPTDEEIATQLCWTVE 483
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ R PISL+ + + ++ D IP + P + +K L+++E++ +L TL
Sbjct: 484 KVKQVKNVAREPISLETPIGEEEDSSLGDFIPDTEIENPSNVTEKILLREEVQSVLSTLP 543
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE ++L++ FGLDG + +E+G ++RERIRQI AL +L+ LK ++
Sbjct: 544 SREHEVLKMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALRRLRHPRHSRRLKDFL 602
>gi|435854122|ref|YP_007315441.1| RNA polymerase sigma factor, sigma-70 family [Halobacteroides
halobius DSM 5150]
gi|433670533|gb|AGB41348.1| RNA polymerase sigma factor, sigma-70 family [Halobacteroides
halobius DSM 5150]
Length = 278
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 153/255 (60%), Gaps = 1/255 (0%)
Query: 124 GELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGA 183
E + NL K +I ++E+++ +I + LVVSIA Y G+GL DLIQEG++GL++
Sbjct: 23 AEEEKNLAK-RIEEGDKEAEQDLIEANLRLVVSIAKKYVGQGLDFLDLIQEGNLGLMKAI 81
Query: 184 KRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRR 243
++F+ ERG + STY WWIKQ I RA+A+KSRTIR+P + + K + N LS L R
Sbjct: 82 QKFDYERGCRFSTYATWWIKQRINRALADKSRTIRVPAHIWESINKYLKIFNKLSGDLGR 141
Query: 244 MPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQ 303
P E+A+ +N V+ + PISLD V + + D+I P+ P+++
Sbjct: 142 EPKLEELAQEMNSSTEKVKKIQRLIQDPISLDTPVGEDDDCYLGDVIEDPNILTPDQLAD 201
Query: 304 KQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363
+++++EL ++L TLS+RE IL+L FGL P + +EIG+ LSRERIRQI AL
Sbjct: 202 DEMLREELNDVLDTLSKREKRILQLRFGLLDGRPRTLREIGKDYDLSRERIRQIEKKALQ 261
Query: 364 KLQQTNILNNLKVYM 378
+L+ LK Y+
Sbjct: 262 RLRHPKRSKRLKGYL 276
>gi|38233991|ref|NP_939758.1| RNA polymerase sigma factor [Corynebacterium diphtheriae NCTC
13129]
gi|38200253|emb|CAE49937.1| RNA polymerase sigma factor [Corynebacterium diphtheriae]
Length = 502
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 263 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 322
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 323 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 382
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 383 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 442
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 443 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 501
>gi|142114|gb|AAA22047.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
Length = 416
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+S+E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 176 QSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 235
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A L++ +
Sbjct: 236 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQ 295
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L+ LL L+
Sbjct: 296 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDGVTPEEMLMRESLQRDLQHLLADLTS 354
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 355 RERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 412
>gi|366162136|ref|ZP_09461891.1| RNA polymerase sigma factor RpoD [Acetivibrio cellulolyticus CD2]
Length = 359
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 145/238 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY W
Sbjct: 121 ESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATW 180
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ + L + L + P EIA+ +N+ V
Sbjct: 181 WIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGKEPQPEEIAKEMNMPVEK 240
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ ++ P+SL+ + + + D IP D P L+K++L ++L TL+
Sbjct: 241 VREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLIDVLDTLTP 300
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 301 REEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 358
>gi|344996804|ref|YP_004799147.1| RpoD subfamily RNA polymerase sigma-70 subunit
[Caldicellulosiruptor lactoaceticus 6A]
gi|343965023|gb|AEM74170.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor lactoaceticus 6A]
Length = 419
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GLL+ ++F+ +GYK STY
Sbjct: 179 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYA 238
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + R PT EIA+ +N+ V
Sbjct: 239 TWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPV 298
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D IP D P ++K++L E+L +L
Sbjct: 299 EKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSL 358
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +L+L FGL+ + +E+G+ +++RERIRQI AL KL+ + LK ++
Sbjct: 359 NEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 418
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 145/240 (60%), Gaps = 1/240 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ R+I S LVVSIA Y +G+ DLIQEG++GL R A++F+P++GYK STY Y
Sbjct: 142 RTAKRRMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAY 201
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I R IAN+ RTIRLP + + K+ L R L R+P D+EIA+ L I +
Sbjct: 202 WWIRQGITRTIANQGRTIRLPVHVVEQINKLRRVYRDLRRSLNRIPNDTEIAQELEISLP 261
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL-QTL 318
+R + R +SL+ + + D + + + PE + +M+Q++ E+L L
Sbjct: 262 QLRNLQQIRRKTLSLNHRLGTDENTELLDFLEDNENSTPEAQMNDMMMRQDILEVLNHVL 321
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
S RE D++ L +GL P + E+ R+++LSRER+RQI+ A+ KL++ + LK ++
Sbjct: 322 SNREQDVISLRYGLITGEPHTLDEVSRMINLSRERVRQIQAKAMRKLRRPQVAERLKGWL 381
>gi|365129836|ref|ZP_09341218.1| RNA polymerase sigma factor RpoD [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620810|gb|EHL72057.1| RNA polymerase sigma factor RpoD [Subdoligranulum sp. 4_3_54A2FAA]
Length = 362
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 146/237 (61%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 125 AKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYATWW 184
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + ++ L R PT EIAE L++ V V
Sbjct: 185 IRQAITRAIADQARTIRIPVHMVETINKVKKVSSQLLHRNGHEPTADEIAEELDMPVDKV 244
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + P+SL+ + + + D IP D +P L+K++L +L++L+ R
Sbjct: 245 REIMRVAQEPVSLETPIGEEEDSHLGDFIPDEDAPVPAEAASHTLLKEQLSGVLKSLTPR 304
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGL+ P + +E+G+ +++RERIRQI AL KL+ + L+ ++
Sbjct: 305 EEKVLRLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLRDFL 361
>gi|302871329|ref|YP_003839965.1| RpoD subfamily RNA polymerase sigma-70 subunit
[Caldicellulosiruptor obsidiansis OB47]
gi|302574188|gb|ADL41979.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor obsidiansis OB47]
Length = 417
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GLL+ ++F+ +GYK STY
Sbjct: 177 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYA 236
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + R PT EIA+ +N+ V
Sbjct: 237 TWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPV 296
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D IP D P ++K++L E+L +L
Sbjct: 297 EKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSL 356
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +L+L FGL+ + +E+G+ +++RERIRQI AL KL+ + LK ++
Sbjct: 357 NEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416
>gi|87301096|ref|ZP_01083937.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87284064|gb|EAQ76017.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 308
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 150/239 (62%), Gaps = 1/239 (0%)
Query: 129 NLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
+L + ++L R ++ER++++ LVVS+A YQGKGL L DLIQEGS+GL R ++F+P
Sbjct: 60 SLRQKQLLRLGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDP 119
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ ++ + + L+ +L MP+ S
Sbjct: 120 TRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLSAVRRVSLELAHKLGAMPSRS 179
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDETMPERMVQKQLM 307
EIAE + I + + + ++ SLD V + G + D+I P V++ +
Sbjct: 180 EIAEAMAIPIQELDGLLRQSLTTSSLDAPVNGEEGRSFLGDLIADSSHDEPLDQVERGMH 239
Query: 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
++L+ L LSE+E +L L FGLDG + EIGRLL +SRER+RQ+ AL KL+
Sbjct: 240 HEQLERWLSYLSEQERQVLDLRFGLDGHERHTLAEIGRLLDVSRERVRQVELKALRKLR 298
>gi|381162242|ref|ZP_09871472.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254147|gb|EHY88073.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 514
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +G+K STY WWI+QAI RA+A+
Sbjct: 288 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMAD 347
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 348 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 407
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 408 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 467
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 468 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 513
>gi|13195265|gb|AAK15630.1|AF326348_2 RNA polymerase major sigma subunit [Corynebacterium ammoniagenes]
Length = 467
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 228 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 287
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 288 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 347
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 348 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLS 407
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 408 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 466
>gi|447912860|ref|YP_007394272.1| RNA polymerase sigma factor RpoD [Enterococcus faecium NRRL B-2354]
gi|445188569|gb|AGE30211.1| RNA polymerase sigma factor RpoD [Enterococcus faecium NRRL B-2354]
Length = 369
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 124 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 183
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 184 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 243
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 244 MDLPTEKVREILKIAQGPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLED 303
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 304 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 363
Query: 374 LKVYM 378
LK ++
Sbjct: 364 LKDFL 368
>gi|145295815|ref|YP_001138636.1| RNA polymerase sigma factor [Corynebacterium glutamicum R]
gi|140845735|dbj|BAF54734.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 494
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 255 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 314
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+++ ++I
Sbjct: 315 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEE 374
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TLS
Sbjct: 375 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLS 434
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 435 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 493
>gi|385840490|ref|YP_005863814.1| RNA polymerase sigma factor [Lactobacillus salivarius CECT 5713]
gi|417788402|ref|ZP_12436085.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius NIAS840]
gi|417810215|ref|ZP_12456894.1| RNA polymerase sigma factor [Lactobacillus salivarius GJ-24]
gi|418961440|ref|ZP_13513326.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius SMXD51]
gi|300214611|gb|ADJ79027.1| RNA polymerase sigma factor [Lactobacillus salivarius CECT 5713]
gi|334308579|gb|EGL99565.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius NIAS840]
gi|335349011|gb|EGM50511.1| RNA polymerase sigma factor [Lactobacillus salivarius GJ-24]
gi|380343972|gb|EIA32319.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius SMXD51]
Length = 372
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +G+K
Sbjct: 127 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + + L R P EI
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPMPEEIGAE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L+
Sbjct: 247 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLES 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 366
Query: 374 LKVYM 378
LK ++
Sbjct: 367 LKDFL 371
>gi|374296445|ref|YP_005046636.1| RNA polymerase, sigma 38 subunit, RpoS [Clostridium clariflavum DSM
19732]
gi|359825939|gb|AEV68712.1| RNA polymerase, sigma 38 subunit, RpoS [Clostridium clariflavum DSM
19732]
Length = 359
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 146/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY W
Sbjct: 121 EAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATW 180
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ + L + L + P EIA+ +N+ V
Sbjct: 181 WIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGKEPQPEEIAKEMNMPVEK 240
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ ++ P+SL+ + + + D IP D P L+K++L ++L TL+
Sbjct: 241 VREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLIDVLDTLTP 300
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 301 REEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 358
>gi|359462082|ref|ZP_09250645.1| RNA polymerase sigma factor SigC [Acaryochloris sp. CCMEE 5410]
Length = 423
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/256 (39%), Positives = 153/256 (59%), Gaps = 7/256 (2%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
N ELD +VK I KE +I++ LVVS+A YQ +GL L DLIQEG++GL R
Sbjct: 171 NAELD-QIVKQGIKAKEH-----MIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERA 224
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
++F+P +GY+ STY YWWI+Q I RAIA +SRTIRLP + + KI +A LS+
Sbjct: 225 VEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQSKG 284
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R + +IA+ +++ +R + R +SL+ V + D++ D+ PE ++
Sbjct: 285 RTASIEDIAQEMDMTPEQIRELLVRVPRSVSLEIKVGKDKDTELGDLLE-TDDISPEELI 343
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
++ ++ ELK+LL L+ RE D++ + FGL+ S +IG+ L LSRER+RQI AL
Sbjct: 344 MRESLQHELKQLLADLTPRERDVITMRFGLNDGKTHSLAQIGKSLDLSRERVRQIESKAL 403
Query: 363 TKLQQTNILNNLKVYM 378
KL+Q N ++ ++
Sbjct: 404 QKLRQPKRRNRIRDFL 419
>gi|260434805|ref|ZP_05788775.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260412679|gb|EEX05975.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 312
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 154/246 (62%), Gaps = 3/246 (1%)
Query: 122 ENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLR 181
E+GEL + ++L R ++ER++++ LVVS+A YQGKGL L DLIQEGS+GL R
Sbjct: 59 EDGEL--TTAQRRLLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLER 116
Query: 182 GAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRL 241
++F+P RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ + I + + L+ +L
Sbjct: 117 AVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKL 176
Query: 242 RRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDETMPER 300
MP+ EIAE ++I + + + + SLD V + G + D+I P
Sbjct: 177 GAMPSRVEIAEAMDIPLDELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADSSLDEPLE 236
Query: 301 MVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360
+V++++ ++L L LSE+E +LR+ FGL+G + EIGRL+ +SRER+RQ+
Sbjct: 237 IVEQRIHHEQLGRWLSHLSEQEQHVLRMRFGLEGNERHTLAEIGRLMEVSRERVRQVELK 296
Query: 361 ALTKLQ 366
AL KL+
Sbjct: 297 ALRKLR 302
>gi|23308878|ref|NP_601117.2| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|21324681|dbj|BAB99304.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) (SigA)
[Corynebacterium glutamicum ATCC 13032]
gi|385144017|emb|CCH25056.1| RNA polymerase sigma factor [Corynebacterium glutamicum K051]
Length = 498
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 259 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 318
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+++ ++I
Sbjct: 319 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEE 378
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TLS
Sbjct: 379 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLS 438
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 439 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 497
>gi|365924947|ref|ZP_09447710.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|420266363|ref|ZP_14768838.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
gi|394425595|gb|EJE98541.1| RNA polymerase sigma factor RpoD [Lactobacillus mali KCTC 3596 =
DSM 20444]
Length = 374
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 147/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ES++R+ + LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +G+K
Sbjct: 129 KIEEGNEESKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + + L R P EI
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPVPEEIGAE 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L+
Sbjct: 249 MDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYELLKEQLES 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 309 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 368
Query: 374 LKVYM 378
LK ++
Sbjct: 369 LKDFL 373
>gi|395236968|ref|ZP_10415097.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
gi|394487840|emb|CCI83185.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
Length = 429
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 145/239 (60%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 190 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 249
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A ++I
Sbjct: 250 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAREMDITED 309
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 310 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLTTLS 369
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 370 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 428
>gi|418244274|ref|ZP_12870697.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
gi|354511680|gb|EHE84586.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
Length = 494
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 255 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 314
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+++ ++I
Sbjct: 315 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEE 374
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TLS
Sbjct: 375 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLS 434
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 435 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 493
>gi|227890913|ref|ZP_04008718.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius ATCC
11741]
gi|227867322|gb|EEJ74743.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius ATCC
11741]
Length = 372
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +G+K
Sbjct: 127 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + + L R P EI
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPMPEEIGAE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L+
Sbjct: 247 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLES 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 366
Query: 374 LKVYM 378
LK ++
Sbjct: 367 LKDFL 371
>gi|62390750|ref|YP_226152.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|41326088|emb|CAF20251.1| RNA POLYMERASE SIGMA 70 FACTOR [Corynebacterium glutamicum ATCC
13032]
Length = 494
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 255 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 314
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+++ ++I
Sbjct: 315 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEE 374
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TLS
Sbjct: 375 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLS 434
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 435 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 493
>gi|376248695|ref|YP_005140639.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC04]
gi|376257308|ref|YP_005145199.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae VA01]
gi|372115263|gb|AEX81321.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC04]
gi|372119825|gb|AEX83559.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae VA01]
Length = 506
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 267 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 326
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 327 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 386
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 387 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 446
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 447 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 505
>gi|311031650|ref|ZP_07709740.1| RNA polymerase sigma factor RpoD [Bacillus sp. m3-13]
Length = 374
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 134 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYA 193
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EIAE +++
Sbjct: 194 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAEDMDLTP 253
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T P +L+K++L+++L TL
Sbjct: 254 DKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTL 313
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 314 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
>gi|301301338|ref|ZP_07207482.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851066|gb|EFK78806.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 372
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +G+K
Sbjct: 127 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + + L R P EI
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPMPEEIGAE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L+
Sbjct: 247 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLES 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 366
Query: 374 LKVYM 378
LK ++
Sbjct: 367 LKDFL 371
>gi|300858628|ref|YP_003783611.1| RNA polymerase sigma factor A [Corynebacterium pseudotuberculosis
FRC41]
gi|375288806|ref|YP_005123347.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383314390|ref|YP_005375245.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis P54B96]
gi|384504811|ref|YP_005681481.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1002]
gi|384506905|ref|YP_005683574.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis C231]
gi|384508992|ref|YP_005685660.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis I19]
gi|384511084|ref|YP_005690662.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis PAT10]
gi|385807690|ref|YP_005844087.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 267]
gi|387136734|ref|YP_005692714.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 42/02-A]
gi|300686082|gb|ADK29004.1| RNA polymerase sigma factor A [Corynebacterium pseudotuberculosis
FRC41]
gi|302206337|gb|ADL10679.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis C231]
gi|302330894|gb|ADL21088.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1002]
gi|308276579|gb|ADO26478.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis I19]
gi|341825023|gb|AEK92544.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis PAT10]
gi|348607179|gb|AEP70452.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371576095|gb|AEX39698.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 3/99-5]
gi|380869891|gb|AFF22365.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis P54B96]
gi|383805083|gb|AFH52162.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 267]
Length = 517
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 278 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 337
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 338 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 397
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 398 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 457
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 458 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 516
>gi|227542254|ref|ZP_03972303.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227182083|gb|EEI63055.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 603
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 364 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 423
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 424 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 483
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TLS
Sbjct: 484 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLKTLS 543
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 544 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 602
>gi|149370109|ref|ZP_01889960.1| RNA polymerase sigma-70 factor [unidentified eubacterium SCB49]
gi|149356600|gb|EDM45156.1| RNA polymerase sigma-70 factor [unidentified eubacterium SCB49]
Length = 287
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 157/245 (64%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++ + E++ + VVS+A YQ +GL+L DLI EG++GL++ A RF+ RG+K
Sbjct: 42 KIKAGDQRALEKLTNANLRFVVSVAKQYQNQGLTLPDLINEGNVGLIKAASRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+QAI++A+A +SR +RLP + G + KI +A L + +R P+ EIA+
Sbjct: 102 FISYAVWWIRQAILQALAEQSRIVRLPLNKIGSINKINKAFTHLEQAHQRPPSPEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ ++ V+ +I+ + IS+D +T+ + D++ + P++ + + ++ E++
Sbjct: 162 LDMTINDVKESIKNSGRSISMDAPLTEGEDYNLYDVLNTGESPNPDQALLLESLRTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ RE+D+++L+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ALETLTPRESDVIKLYFGLSDQRPMTLEEIGSTFDLTRERVRQIKEKAVRRLKHTSRSTI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|427728873|ref|YP_007075110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427364792|gb|AFY47513.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 309
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 155/251 (61%), Gaps = 9/251 (3%)
Query: 116 SDFLDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEG 175
+DF++K E++ +IL + + +++++I + LVVS+A YQ + L DL+QEG
Sbjct: 54 ADFVNKSETEVN------QILQQGQRAKQKMITANLRLVVSVAKKYQHRNLEFLDLVQEG 107
Query: 176 SIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANN 235
+IGL RG ++F+P RGYKLSTY YWWI QAI RAIA KSRT+RLP + + +I +A
Sbjct: 108 AIGLQRGIEKFDPNRGYKLSTYAYWWISQAITRAIAEKSRTVRLPVHVNEKLNQIKKAQR 167
Query: 236 VLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDE 295
L + L R T +EIA+ LN+ S +R + ISLD V D + +++ PDE
Sbjct: 168 ELFQTLNRRATVTEIAQKLNLEPSQIREYLSVASGTISLDLKVGDNQDTELSELL--PDE 225
Query: 296 TM-PERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERI 354
+ P + ++L++Q+L +LL +L + ++L L FGL S +IG L++SRER+
Sbjct: 226 GISPNEQITQELLRQDLSDLLASLKPVQREVLILRFGLLDNQERSLAQIGEKLNVSRERV 285
Query: 355 RQIRGIALTKL 365
RQI+ A+T L
Sbjct: 286 RQIQQQAMTAL 296
>gi|375101493|ref|ZP_09747756.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662225|gb|EHR62103.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 474
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +G+K STY WWI+QAI RA+A+
Sbjct: 248 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMAD 307
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 308 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 367
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 368 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 427
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 428 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 473
>gi|312128161|ref|YP_003993035.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor hydrothermalis 108]
gi|312134621|ref|YP_004001959.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor owensensis OL]
gi|312792985|ref|YP_004025908.1| RNA polymerase, sigma 70 subunit, rpod subfamily
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|311774672|gb|ADQ04159.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor owensensis OL]
gi|311778180|gb|ADQ07666.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor hydrothermalis 108]
gi|312180125|gb|ADQ40295.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 417
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GLL+ ++F+ +GYK STY
Sbjct: 177 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYA 236
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + R PT EIA+ +N+ V
Sbjct: 237 TWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPV 296
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D IP D P ++K++L E+L +L
Sbjct: 297 EKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSL 356
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +L+L FGL+ + +E+G+ +++RERIRQI AL KL+ + LK ++
Sbjct: 357 NEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 416
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 137/215 (63%), Gaps = 1/215 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y + L L DLIQEG+IG+ RG ++F+P +GY+ STY YWWI+QAI RAIA
Sbjct: 94 LVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAE 153
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
K RTIRLP + + KI +A L+++ RM T +E+AE L + VR +E++R PI
Sbjct: 154 KGRTIRLPIHITEKLNKIKKAQRKLAQQKGRMATIAELAEELELTPKQVRDYLEKSRQPI 213
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V D + D++ ++ PE ++++L L+ L+ ++ +++ L FGL
Sbjct: 214 SLDVKVGDNNDTELGDMLVDMGQS-PEDYATSSSLRKDLSRLMSELTPQQQEVISLRFGL 272
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
P++ +IG LS+SRER+RQI ALTKL+Q
Sbjct: 273 RDGKPLTLAKIGTFLSISRERVRQIEREALTKLRQ 307
>gi|306820486|ref|ZP_07454120.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304551472|gb|EFM39429.1| DNA-directed RNA polymerase sigma subunit RpoD [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 538
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 142/234 (60%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
+I+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+Q
Sbjct: 304 KIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQ 363
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLA 264
AI RAIA+++RTIR+P M + K+ N L + L R P EIAE + + +R
Sbjct: 364 AITRAIADQARTIRIPVHMVETINKLIRINRQLVQELGRDPRPEEIAEQMGMSQDKIREI 423
Query: 265 IERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREAD 324
++ + P+SL+ + + + D IP D P L++++++++L TL++RE
Sbjct: 424 MKIAQEPVSLETPIGEEEDSHLGDFIPDDDAQAPSEAAAYSLLREQIEQVLCTLTDRERR 483
Query: 325 ILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+L+L FGLD P + +E+G+ ++RERIRQI AL KL+ N LK Y+
Sbjct: 484 VLKLRFGLDDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRGPKKSNKLKDYL 537
>gi|12958492|gb|AAK09321.1|AF320817_2 sigma factor SigA [[Brevibacterium] flavum]
Length = 498
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 259 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 318
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+++ ++I
Sbjct: 319 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEE 378
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TLS
Sbjct: 379 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLS 438
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 439 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 497
>gi|375086568|ref|ZP_09732974.1| RNA polymerase sigma factor rpoD [Megamonas funiformis YIT 11815]
gi|374564707|gb|EHR35989.1| RNA polymerase sigma factor rpoD [Megamonas funiformis YIT 11815]
Length = 378
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 146/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+Q+R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY W
Sbjct: 140 EAQKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATW 199
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ + L + L R P+ EIA+ +++ V
Sbjct: 200 WIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQSLGREPSPEEIAKEMDVSVDR 259
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I D P L+K++L+++L TL+E
Sbjct: 260 VREIMKIAQEPVSLETPIGEEEDSHLGDFIEDHDAPAPAEAASFVLLKEQLEDVLDTLTE 319
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 320 REEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 377
>gi|407983277|ref|ZP_11163934.1| RNA polymerase sigma factor RpoD [Mycobacterium hassiacum DSM
44199]
gi|407375170|gb|EKF24129.1| RNA polymerase sigma factor RpoD [Mycobacterium hassiacum DSM
44199]
Length = 527
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 153/248 (61%), Gaps = 3/248 (1%)
Query: 133 YKILCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
Y+ + ++ E ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +G
Sbjct: 280 YQWISRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 339
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
YK STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A
Sbjct: 340 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELA 399
Query: 252 EMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQEL 311
+ ++I V + R PISLD + D G + D I + + V L++ +L
Sbjct: 400 KEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQL 459
Query: 312 KELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
+ +L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 460 QSVLETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSR 518
Query: 371 LNNLKVYM 378
L+ Y+
Sbjct: 519 SQVLRDYL 526
>gi|375094960|ref|ZP_09741225.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655693|gb|EHR50526.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 470
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +G+K STY WWI+QAI RA+A+
Sbjct: 244 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMAD 303
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 304 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 363
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 364 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 423
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 424 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 469
>gi|227488750|ref|ZP_03919066.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227091172|gb|EEI26484.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51867]
Length = 599
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 360 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 419
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 420 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 479
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TLS
Sbjct: 480 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLKTLS 539
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 540 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 598
>gi|417971564|ref|ZP_12612487.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
gi|344044046|gb|EGV39727.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
Length = 494
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 255 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 314
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+++ ++I
Sbjct: 315 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEE 374
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TLS
Sbjct: 375 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLS 434
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 435 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 493
>gi|402309575|ref|ZP_10828567.1| RNA polymerase sigma factor RpoD [Eubacterium sp. AS15]
gi|400372231|gb|EJP25179.1| RNA polymerase sigma factor RpoD [Eubacterium sp. AS15]
Length = 538
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 142/234 (60%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
+I+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+Q
Sbjct: 304 KIVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQ 363
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLA 264
AI RAIA+++RTIR+P M + K+ N L + L R P EIAE + + +R
Sbjct: 364 AITRAIADQARTIRIPVHMVETINKLIRINRQLVQELGRDPRPEEIAEQMGMSQDKIREI 423
Query: 265 IERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREAD 324
++ + P+SL+ + + + D IP D P L++++++++L TL++RE
Sbjct: 424 MKIAQEPVSLETPIGEEEDSHLGDFIPDDDAQAPSEAAAYSLLREQIEQVLCTLTDRERR 483
Query: 325 ILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+L+L FGLD P + +E+G+ ++RERIRQI AL KL+ N LK Y+
Sbjct: 484 VLKLRFGLDDGRPRTLEEVGKEFDVTRERIRQIEAKALRKLRGPKKSNKLKDYL 537
>gi|332686632|ref|YP_004456406.1| RNA polymerase sigma factor RpoD [Melissococcus plutonius ATCC
35311]
gi|379727357|ref|YP_005319542.1| RNA polymerase sigma factor RpoD [Melissococcus plutonius DAT561]
gi|332370641|dbj|BAK21597.1| RNA polymerase sigma factor RpoD [Melissococcus plutonius ATCC
35311]
gi|376318260|dbj|BAL62047.1| RNA polymerase sigma factor RpoD [Melissococcus plutonius DAT561]
Length = 369
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 124 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 183
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 184 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 243
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 244 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPAEHAAYELLKEQLED 303
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 304 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 363
Query: 374 LKVYM 378
LK ++
Sbjct: 364 LKDFL 368
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 144/218 (66%), Gaps = 3/218 (1%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y + + L DLIQEGSIG+ RG ++F+P +GY+ STY YWWI+QAI RAIA
Sbjct: 94 LVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAE 153
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
K+RTIRLP + + KI +A LS+RL R P+ SE+A L + VR +E+ R P+
Sbjct: 154 KARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPSASELASELELTPKQVREYLEKARLPL 213
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D + +++ P + PE V + + +L+ L++ L+ ++ ++++L FGL
Sbjct: 214 SLDLRLGDNYDTELGEMLEDPGAS-PEEFVMQSSLSYDLERLMEQLTPQQREVIKLRFGL 272
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369
DGQ ++ +IG +L++SRER+RQI ALTKL+++
Sbjct: 273 MDGQA-LTLAKIGEILNISRERVRQIEREALTKLRKSK 309
>gi|288574624|ref|ZP_06392981.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570365|gb|EFC91922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 381
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 142/238 (59%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++ ++I + LVVSIA Y G+G+ DLIQEG++GL+R ++F+ RGYK STY W
Sbjct: 143 EAKSQLIEANLRLVVSIAKKYMGRGMLFLDLIQEGNLGLIRAVEKFDYSRGYKFSTYATW 202
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ A+ L + L R PTD EIA + I +
Sbjct: 203 WIRQAITRAIADQARTIRIPVHMVETINKVMRASRNLVQSLGREPTDEEIAAEMGIEPAK 262
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
V + + PISL+ V + + D I D P+ + ++ +L ++L+ L++
Sbjct: 263 VVQIRKVAQEPISLESPVGEEDDSELGDFIEDKDMISPDDSTSMEFLRDQLDDVLEGLTD 322
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LRL FG D + +++GR ++RERIRQI AL KL+ + L+ YM
Sbjct: 323 REKQVLRLRFGFDDGQCYTLEDVGRRFGVTRERIRQIEAKALRKLRHPSRSVTLRDYM 380
>gi|339499649|ref|YP_004697684.1| RpoD subfamily RNA polymerase sigma-70 subunit [Spirochaeta
caldaria DSM 7334]
gi|338833998|gb|AEJ19176.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Spirochaeta
caldaria DSM 7334]
Length = 346
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 151/256 (58%), Gaps = 13/256 (5%)
Query: 121 KENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLL 180
KE +LD L+ YK ++I S LVVSIA YQ +GLSL DLI EG+IGL+
Sbjct: 99 KERVQLDNALMYYK---------NKMINSNLRLVVSIAKNYQHRGLSLLDLIDEGNIGLI 149
Query: 181 RGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRR 240
+RF+ R + STY WWI+QAII+++A+K R IR+P M + K L++
Sbjct: 150 EAVERFDYTRKCRFSTYGTWWIRQAIIKSLADKGRVIRIPIHMLNTIKKCYFIAKQLTQD 209
Query: 241 LRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM--P 298
L R P+D E++E L + VS V+ ++ ++ SLD V D + D+I DET+ P
Sbjct: 210 LGRDPSDEELSEYLGVPVSKVKEIVKLSQETTSLDTTVDDDNVTRLSDLI--KDETLEDP 267
Query: 299 ERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIR 358
MV ++ L +L LSERE I++L FGL G+ P++ +E G+LL ++RER+RQI+
Sbjct: 268 FDMVFAMTLQDTLDSVLSHLSEREVKIIQLRFGLTGEGPLTLEETGKLLGITRERVRQIQ 327
Query: 359 GIALTKLQQTNILNNL 374
A+ KL+ LN+
Sbjct: 328 EKAIFKLRNLKQLNDF 343
>gi|449125686|ref|ZP_21761988.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
OTK]
gi|448939655|gb|EMB20572.1| sigma-70 family RNA polymerase sigma factor [Treponema denticola
OTK]
Length = 286
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 145/251 (57%), Gaps = 3/251 (1%)
Query: 131 VKYKILCK--ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
+KY L + + +++ ++ S VV++A YQ +GL L DLI EG+IGL+ A+RF+
Sbjct: 35 IKYAKLAEKGDEDAKNMLVNSNLRFVVNVAKKYQNQGLPLMDLISEGNIGLMNAAERFDV 94
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
+GYK +Y WWIKQ+I++AI KSR IRLP + A + +I + + +
Sbjct: 95 SKGYKFISYAVWWIKQSILKAICEKSRMIRLPLNRANELVQIEKVKKEIDFSGNETKELN 154
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAVTDR-GCMTMQDIIPGPDETMPERMVQKQLM 307
EIA +LN+ S V + R P+S+D V D G ++ D + MPE +
Sbjct: 155 EIAGILNMDNSMVHTIMNAAREPVSIDAPVFDEPGSSSVNDFLQDETHQMPEDYAMDMSL 214
Query: 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ E+ ELL+ L +REA+I+R FGL G P+S KE+G + +L++ERIRQI AL +L++
Sbjct: 215 RDEVNELLKNLDDREAEIIRYRFGLGGYAPLSLKEVGLIFNLTKERIRQIEKKALQQLKK 274
Query: 368 TNILNNLKVYM 378
L VY+
Sbjct: 275 PAEKQKLAVYV 285
>gi|392400741|ref|YP_006437341.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis Cp162]
gi|390531819|gb|AFM07548.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis Cp162]
Length = 521
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 282 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 341
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 342 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 401
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 402 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 461
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 462 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 520
>gi|347755938|ref|YP_004863502.1| RNA polymerase sigma factor RpoD/sigma-70 family RNA polymerase
sigma factor [Candidatus Chloracidobacterium
thermophilum B]
gi|347588456|gb|AEP12986.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Candidatus
Chloracidobacterium thermophilum B]
Length = 558
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 139/229 (60%), Gaps = 3/229 (1%)
Query: 153 LVVSIATGY--QGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAI 210
LVVSIA Y + +GL DLIQEG+IGL+R ++F+ RGYK STY WWI+QA+ RAI
Sbjct: 326 LVVSIAKNYINRSRGLQFSDLIQEGNIGLMRAVEKFDYRRGYKFSTYATWWIRQAVTRAI 385
Query: 211 ANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRH 270
A++ RTIR+P M + KI ++ + L R PT E+A+ ++ V VR A++ +
Sbjct: 386 ADQGRTIRVPVHMVETINKIVRTARLMVQELGREPTHEELAQRTDLPVVKVRQALKIAQE 445
Query: 271 PISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHF 330
PISL+ + D G + I + P M+ + +++ E+L TL++REA IL++ F
Sbjct: 446 PISLETPIGDDGESNLGSFIEDRNSLNPAEMIVGKGLREATLEVLSTLTQREAQILKMRF 505
Query: 331 GLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
GLDG + +E+GR S++RERIRQI AL KL+ + LK +
Sbjct: 506 GLDGDGQERTLEEVGRHFSVTRERIRQIEAKALRKLRHPSRSRKLKTFF 554
>gi|325290508|ref|YP_004266689.1| RpoD subfamily RNA polymerase sigma-70 subunit [Syntrophobotulus
glycolicus DSM 8271]
gi|324965909|gb|ADY56688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Syntrophobotulus
glycolicus DSM 8271]
Length = 392
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 144/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 155 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFRKGFKFSTYATWW 214
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ N L + L R PT E A++++I V
Sbjct: 215 IRQAITRAIADQARTIRIPVHMVETINKLIRVNRQLLQELGRDPTPEETAKVMDIPEERV 274
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D IP D P L+K++L+E+L+TL+ R
Sbjct: 275 REIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFLLLKEQLEEVLETLTSR 334
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK Y+
Sbjct: 335 EEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 391
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 152/228 (66%), Gaps = 3/228 (1%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ +++ + LVVS+A Y + + L DLIQEGSIG+ RG ++F+P +GY+ STY YWW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA K+RTIRLP + + KI +A LS++L R P+ +E+A+ L++ V
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPSAAELAQELDLTPKQV 216
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R +ER R P+SLD + D + +++ P + PE V + + +L+ L++ L+ +
Sbjct: 217 REYLERARLPLSLDLRLGDNYDTELGEMLEDPGAS-PEEFVMQSSLSYDLERLMEELTPQ 275
Query: 322 EADILRLHFG-LDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
+ ++++L FG LDGQ ++ +IG +L++SRER+RQI ALTKL+++
Sbjct: 276 QKEVIKLRFGLLDGQA-LTLAKIGDILNISRERVRQIEREALTKLRKS 322
>gi|293376344|ref|ZP_06622581.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325843397|ref|ZP_08167955.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
gi|292645033|gb|EFF63106.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325489319|gb|EGC91693.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
Length = 456
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 145/237 (61%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++R++ + LVVSIA + G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 218 AKKRLVEANLRLVVSIAKRHVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWW 277
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI+E + I V
Sbjct: 278 IRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLVQELGREPLPEEISEKMGIAPEKV 337
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ ++ P+SL+ V + + D IP D P +++K+EL ++L+TL++R
Sbjct: 338 REILKISQEPVSLESPVGEEDDSHLGDFIPDADALSPSEFASNEMLKKELDDVLETLTDR 397
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGL+ + +E+G+ ++RERIRQI AL KL+ + LK +M
Sbjct: 398 EERVLRLRFGLEDGRTRTLEEVGKEFGVTRERIRQIEAKALRKLRHPSRSRRLKDFM 454
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 156/244 (63%), Gaps = 1/244 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R A++F+P++GYK S
Sbjct: 129 LYRGRVAKRKMIRSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFS 188
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI R IAN +RTIRLP + + K+ +A L ++L+R P + E+A+ L
Sbjct: 189 TYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRELKQKLQRNPNELELAQALE 248
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I +S +R +E R +SL+ V + D++ D +PE + + +M+QE+ E+L
Sbjct: 249 ISLSHLRQLLELRRRSLSLNHRVGKGEDTELMDLLEDNDLRLPEDKMNESMMRQEIWEVL 308
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ERE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ + L
Sbjct: 309 SDVLTEREKDVISLRYGLASSEPYTLEEVGGMFNLSRERVRQIQSKAMRKLRRPQVARRL 368
Query: 375 KVYM 378
+ ++
Sbjct: 369 RDWL 372
>gi|433462816|ref|ZP_20420387.1| RNA polymerase sigma factor RpoD [Halobacillus sp. BAB-2008]
gi|432188272|gb|ELK45476.1| RNA polymerase sigma factor RpoD [Halobacillus sp. BAB-2008]
Length = 377
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 141/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY WWI+QAI RAIA+
Sbjct: 151 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 210
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R PT EIA+ +++ VR ++ + P+
Sbjct: 211 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAQDMDLTPDKVREILKIAQEPV 270
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I + T P +L+K++L+++L TL++RE ++LRL FGL
Sbjct: 271 SLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 330
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 331 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 376
>gi|333919432|ref|YP_004493013.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481653|gb|AEF40213.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 503
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 277 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 336
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 337 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 396
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 397 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 456
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 457 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 502
>gi|163754266|ref|ZP_02161389.1| RNA polymerase sigma-70 factor [Kordia algicida OT-1]
gi|161326480|gb|EDP97806.1| RNA polymerase sigma-70 factor [Kordia algicida OT-1]
Length = 287
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 152/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R+P+ EIA+ L++ V+ V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTFAYLEQSHERIPSAEEIAKELDMTVNDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + + + D++ + P++ + + +K E++ L+TL+ REA
Sbjct: 172 SMKNSGRHVSMDAPLVEGEDSNLYDVLNSGESPNPDKELLHESLKTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGNQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 150/239 (62%), Gaps = 3/239 (1%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+ +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK STY Y
Sbjct: 90 KRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAY 149
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA + RTIRLP + + KI + L+++L R P+ +EIA+ L + +
Sbjct: 150 WWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPAEIAQELELEPA 209
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + R P+SLD V D +Q+++ ++ PE + ++ ++Q+L LL L+
Sbjct: 210 QIREYLNMARQPVSLDVKVGDNQDTELQEMLEDEGQS-PEYYMTQEFLRQDLNNLLSELT 268
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++ ++L L FGL+ +S ++G L+LSRER+RQ+ AL L++ N+K Y+
Sbjct: 269 PQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRRRRA--NVKEYI 325
>gi|1072021|gb|AAA81642.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 463
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL +
Sbjct: 464 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLHHPSRSQV 522
Query: 374 LKVYM 378
L+ Y+
Sbjct: 523 LRDYL 527
>gi|389850558|ref|YP_006352793.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 258]
gi|388247864|gb|AFK16855.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 258]
Length = 521
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 282 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 341
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 342 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 401
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 402 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 461
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 462 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 520
>gi|386740540|ref|YP_006213720.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 31]
gi|384477234|gb|AFH91030.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 31]
Length = 517
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 278 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 337
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 338 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 397
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 398 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 457
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 458 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 516
>gi|374608192|ref|ZP_09680991.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
gi|373553724|gb|EHP80311.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
Length = 498
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 272 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 331
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 332 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 391
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 392 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 451
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 452 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 497
>gi|337290926|ref|YP_004629947.1| RNA polymerase sigma factor A [Corynebacterium ulcerans BR-AD22]
gi|397654185|ref|YP_006494868.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
gi|334699232|gb|AEG84028.1| RNA polymerase sigma factor A [Corynebacterium ulcerans BR-AD22]
gi|393403141|dbj|BAM27633.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
Length = 533
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 294 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 353
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 354 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 413
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 414 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 473
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 474 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 532
>gi|336325738|ref|YP_004605704.1| RNA polymerase sigma factor B [Corynebacterium resistens DSM 45100]
gi|336101720|gb|AEI09540.1| RNA polymerase sigma factor B [Corynebacterium resistens DSM 45100]
Length = 337
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 148/247 (59%), Gaps = 1/247 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
KIL +E + ++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+
Sbjct: 91 KILAREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGF 150
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + + L R T+ E+AE
Sbjct: 151 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAE 210
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I S + L ++++R P+SLD V + D I D T E V L +++
Sbjct: 211 ESGIEESKIELLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSDATDAEAAVVASLRHSDVR 270
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TL ERE D+++L +GLD P + +IGR LSRER+RQI + KL++ + +
Sbjct: 271 AVLGTLEEREQDVIKLRYGLDDGMPRTLDQIGRRFGLSRERVRQIEREVMAKLREGHRAD 330
Query: 373 NLKVYMV 379
L+ Y V
Sbjct: 331 KLREYAV 337
>gi|387138806|ref|YP_005694785.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|349735284|gb|AEQ06762.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis CIP 52.97]
Length = 517
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 278 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 337
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 338 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 397
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 398 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 457
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 458 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 516
>gi|223936758|ref|ZP_03628668.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [bacterium
Ellin514]
gi|223894609|gb|EEF61060.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [bacterium
Ellin514]
Length = 352
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 147/232 (63%), Gaps = 6/232 (2%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+++++E +I++ LVV IA Y+G GL L DLI EG+IGL++ +RF+P +G KLSTY
Sbjct: 114 DKKARELMIKANLRLVVKIARDYEGIGLPLLDLISEGNIGLMKAVERFDPAKGGKLSTYG 173
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNI-- 256
WWIKQ+I RA+AN+S+TIRLP + ++K+ L L R P+D E+A+ LNI
Sbjct: 174 SWWIKQSIKRALANQSKTIRLPVHLVDKISKMRRTALKLQEILGREPSDEELADELNISA 233
Query: 257 -HVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
VS +R A R P SLD + D +++ + P ++++ + + L+EL+
Sbjct: 234 MRVSQMRTAAIR---PASLDAPIGDEDSNNFAEVVQDENADTPYEQLEEKTVTKMLQELV 290
Query: 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+TL REA ILR FGLDG + +E+G+ ++RER+RQI+ IAL KL++
Sbjct: 291 KTLDPREATILRARFGLDGGNQKTLEEVGQKFGVTRERVRQIQNIALKKLRK 342
>gi|78185087|ref|YP_377522.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|116072338|ref|ZP_01469605.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|78169381|gb|ABB26478.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
gi|116064860|gb|EAU70619.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 313
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/251 (39%), Positives = 155/251 (61%), Gaps = 6/251 (2%)
Query: 122 ENGELDYNL-----VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGS 176
E+G D+ + + ++L R ++ER++++ LVVS+A YQGKGL L DLIQEGS
Sbjct: 53 EDGSKDFKVEDLTTKQRRMLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGS 112
Query: 177 IGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNV 236
+GL R ++F+P RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ + I + +
Sbjct: 113 LGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLD 172
Query: 237 LSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDE 295
L+ +L MP EIAE ++I V + + + SLD V + G + D+I
Sbjct: 173 LAHKLGAMPNRLEIAEAMDIPVEELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADSSA 232
Query: 296 TMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIR 355
P +V++++ ++L L LSE+E ++LRL FGL+G + EIGR++ +SRER+R
Sbjct: 233 DEPLDIVEQRIHHEQLGRWLSHLSEQEQNVLRLRFGLEGNERHTLAEIGRMMEVSRERVR 292
Query: 356 QIRGIALTKLQ 366
Q+ AL KL+
Sbjct: 293 QVELKALRKLR 303
>gi|377561650|ref|ZP_09791093.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
gi|377521212|dbj|GAB36258.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
Length = 486
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 260 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 319
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 320 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 379
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 380 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 439
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 440 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 485
>gi|406837892|ref|ZP_11097486.1| RNA polymerase sigma factor RpoD [Lactobacillus vini DSM 20605]
Length = 375
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 135 DEEAKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYA 194
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + + L R PT EI +++
Sbjct: 195 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPTPEEIGAEMDMPT 254
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T P +L+K++L+ +L+TL
Sbjct: 255 DKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDHDATSPADHAAYELLKEQLESVLETL 314
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + L+ ++
Sbjct: 315 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLRDFL 374
>gi|379715508|ref|YP_005303845.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 316]
gi|377654214|gb|AFB72563.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 316]
Length = 521
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 282 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 341
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 342 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 401
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 402 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 461
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 462 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 520
>gi|387140798|ref|YP_005696776.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1/06-A]
gi|355392589|gb|AER69254.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1/06-A]
Length = 517
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 278 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 337
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 338 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 397
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 398 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 457
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 458 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 516
>gi|257056422|ref|YP_003134254.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
gi|256586294|gb|ACU97427.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
Length = 439
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +G+K STY WWI+QAI RA+A+
Sbjct: 213 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMAD 272
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 273 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 332
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 333 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 392
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 393 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 438
>gi|146295919|ref|YP_001179690.1| RpoD family RNA polymerase sigma-70 subunit [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409495|gb|ABP66499.1| RNA polymerase, sigma 70 subunit, RpoD family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 411
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GLL+ ++F+ +GYK STY
Sbjct: 171 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYA 230
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + R PT EIA+ +N+ V
Sbjct: 231 TWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQEKGREPTPEEIAKEMNMPV 290
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D IP D P ++K++L E+L +L
Sbjct: 291 EKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSMLKEQLLEVLDSL 350
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +L+L FGL+ + +E+G+ +++RERIRQI AL KL+ + LK ++
Sbjct: 351 NEREKKVLKLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 410
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 153/245 (62%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R ++F+P++GYK S
Sbjct: 139 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVQFLDLIQEGAMGLNRATEKFDPDKGYKFS 198
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A + ++L R T++E+A+ L+
Sbjct: 199 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQREIKQKLHRNATENELAQALD 258
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+R + R +SL+ V + D++ D PE+ + + +M+QE+ ++L
Sbjct: 259 TTPEQLRQLQQLRRKSLSLNHRVGKEEDTELVDLLEDEDGQSPEQQMNETMMRQEIWDVL 318
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G L +LSRER+RQI+ A+ KL++ I L
Sbjct: 319 ADVLTPREKDVISLRYGLTTSEPCTLEEVGCLFNLSRERVRQIQSKAMRKLRRPQIAKRL 378
Query: 375 KVYMV 379
K ++V
Sbjct: 379 KGWLV 383
>gi|406917815|gb|EKD56514.1| hypothetical protein ACD_58C00166G0002 [uncultured bacterium]
Length = 369
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 153/257 (59%), Gaps = 3/257 (1%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
+GE + L K KI ++ +++++ + LVVSIA Y G+GLSL DLIQEG+ GLLR
Sbjct: 114 SGEEEIRLAK-KIELGDKLAKKKLAEANLRLVVSIAKKYIGRGLSLLDLIQEGNSGLLRA 172
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
++FN +GYK STY WWI+QAI RAIA+++RTIR+P M M+ K+ L + L
Sbjct: 173 VEKFNFHKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVEMINKLIRVQRQLVQDLG 232
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R P EIAE L + V V ++ ++ +SL+ V + + D + D P+
Sbjct: 233 RAPLPEEIAEELELPVEKVEHILKISQETVSLESPVGEEEDSKLGDFLEDKDNMTPDESA 292
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIA 361
QL++ + E LQTL RE IL++ FGL DG+T + +E+G+ ++RERIRQI +
Sbjct: 293 IYQLLRGHVTEFLQTLQPREQKILKMRFGLEDGRTH-TLEEVGKEFGVTRERIRQIEAKS 351
Query: 362 LTKLQQTNILNNLKVYM 378
L +L++ LK Y+
Sbjct: 352 LQRLKKNEDSQKLKDYL 368
>gi|373460155|ref|ZP_09551911.1| sigma-70 family RNA polymerase sigma factor [Prevotella maculosa OT
289]
gi|371956540|gb|EHO74326.1| sigma-70 family RNA polymerase sigma factor [Prevotella maculosa OT
289]
Length = 287
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 148/240 (61%), Gaps = 1/240 (0%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+R++ E++ R+ VVS+A YQ +GLSL DLI EG++GL++ A++F+ RG+K +Y
Sbjct: 47 DRQALEKLTRANLRFVVSVAKQYQNQGLSLADLINEGNLGLIKAAEKFDETRGFKFISYA 106
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+Q+I++AIA +SR +RLP + G V KI A N + P+ EIA+ ++I
Sbjct: 107 VWWIRQSILQAIAEQSRIVRLPLNQVGSVNKIKRALNKFEQENEWYPSIEEIAKKVDIPE 166
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ AI+ IS+D TD T DI+P D M + ++ ++ ++ E+ LQTL
Sbjct: 167 EKIADAIKMNGRQISVDAPFTDGDDCTFLDIMPNSDALMADNVLVRESLQDEISNALQTL 226
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
SERE +I+ FG++ Q+ ++ +EIG L+RER+RQI+ A+ +L+ NLK Y+
Sbjct: 227 SERERNIIEAFFGIN-QSELTLEEIGDKFGLTRERVRQIKEKAIRRLRHHAKSKNLKTYL 285
>gi|417749579|ref|ZP_12397971.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|336458801|gb|EGO37758.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length = 496
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 252 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 311
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 312 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 371
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 372 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 431
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 432 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 490
Query: 374 LKVYM 378
L+ Y+
Sbjct: 491 LRDYL 495
>gi|333394972|ref|ZP_08476791.1| RNA polymerase sigma factor RpoD, partial [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
gi|420144890|ref|ZP_14652369.1| RNA polymerase sigma factor [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403447|gb|EJN56689.1| RNA polymerase sigma factor [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 371
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 148/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 126 KIEQGDGEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 185
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 186 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 245
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L+
Sbjct: 246 MDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLES 305
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 306 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 365
Query: 374 LKVYM 378
LK ++
Sbjct: 366 LKDFL 370
>gi|120403451|ref|YP_953280.1| RNA polymerase sigma factor [Mycobacterium vanbaalenii PYR-1]
gi|119956269|gb|ABM13274.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length = 478
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 234 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 293
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 294 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 353
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 354 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 413
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 414 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 472
Query: 374 LKVYM 378
L+ Y+
Sbjct: 473 LRDYL 477
>gi|125973412|ref|YP_001037322.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum ATCC
27405]
gi|125713637|gb|ABN52129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum ATCC 27405]
Length = 358
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 149/246 (60%)
Query: 133 YKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
++I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+
Sbjct: 112 HRIEQGDAEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGF 171
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIA+
Sbjct: 172 KFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAK 231
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
+N+ V VR ++ ++ P+SL+ + + + D IP D P L+K++L
Sbjct: 232 EMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLV 291
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
++L TL+ RE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ +
Sbjct: 292 DVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSK 351
Query: 373 NLKVYM 378
LK Y+
Sbjct: 352 KLKDYL 357
>gi|312880428|ref|ZP_07740228.1| RNA polymerase, sigma 70 subunit, RpoD [Aminomonas paucivorans DSM
12260]
gi|310783719|gb|EFQ24117.1| RNA polymerase, sigma 70 subunit, RpoD [Aminomonas paucivorans DSM
12260]
Length = 387
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 144/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
S+ +++ + LVVSIA Y G+G+ DLIQEG++GL+R ++F+ +GYK STY WW
Sbjct: 150 SKAKLVEANLRLVVSIAKKYIGRGMLFLDLIQEGNLGLIRAVEKFDYRKGYKFSTYATWW 209
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + L +RL R PT EIA + I V
Sbjct: 210 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLVQRLGREPTAEEIAGEMEIPAERV 269
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ P+SL+ + + + D + D PE Q+++++L+E+L+ L++R
Sbjct: 270 EEIQRIAQEPVSLETPIGEEEDSQLGDFLEDKDLPSPEEAAASQILREQLEEMLEDLTDR 329
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGL+ P + +E+GR ++RERIRQI AL KL+ + L+ ++
Sbjct: 330 EREVLRLRFGLEDGHPHTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKKLRDFL 386
>gi|300784507|ref|YP_003764798.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
U32]
gi|384147774|ref|YP_005530590.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|399536392|ref|YP_006549054.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|299794021|gb|ADJ44396.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
U32]
gi|340525928|gb|AEK41133.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|398317162|gb|AFO76109.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
Length = 467
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/227 (41%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 241 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 300
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 301 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 360
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 361 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 420
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 421 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 466
>gi|262202178|ref|YP_003273386.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
gi|262085525|gb|ACY21493.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
Length = 489
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 263 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 322
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 323 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 382
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 383 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 442
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 443 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 488
>gi|374595369|ref|ZP_09668373.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gillisia limnaea
DSM 15749]
gi|373870008|gb|EHQ02006.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gillisia limnaea
DSM 15749]
Length = 287
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 155/245 (63%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + + E++ ++ VVS+A YQ +GL+L DLI EG++GL++ AKRF+ RG+K
Sbjct: 42 KIKAGDDRALEKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAKRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQSHERPPSAEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ ++ V+ +++ + +S+D + + + D++ + P+R + + ++ E++
Sbjct: 162 LDMTINDVKESMKNSGRHVSMDAPLVEGEDSNLYDVLRSGESPNPDRELLHESLRTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ALETLTPREADVIRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|359419328|ref|ZP_09211286.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
gi|358244735|dbj|GAB09355.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
Length = 508
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 282 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 341
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 342 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 401
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 402 SLDQTIGDEGDSQLGDFIEDSEAIVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 461
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 462 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 507
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 155/246 (63%), Gaps = 1/246 (0%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K L + + ++ ++IRS LVVSIA Y +G+ DLIQEG+IGL R ++F+P +GYK
Sbjct: 129 KFLYRGKVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI R IAN +RTIRLP + + K+ +A L ++L+R P++ E+A+
Sbjct: 189 FSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRNLKQKLQRNPSEQELADE 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L I + +R +E R +SL+ V + D++ D +PE + + +M+QE+ +
Sbjct: 249 LKIPPAQLRQLLELRRQSLSLNHRVGKAEDTELVDLLEDDDLQLPEEKMSEAMMRQEITD 308
Query: 314 LL-QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L L++RE D++ L +GL P + +E+G + ++SRER+RQI+ A+ KL++ +
Sbjct: 309 VLDDVLTQREKDVISLRYGLFTSQPYTLEEVGGMFNISRERVRQIQSKAMRKLRRPQVAR 368
Query: 373 NLKVYM 378
LK ++
Sbjct: 369 RLKGWL 374
>gi|309790481|ref|ZP_07685041.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG-6]
gi|308227468|gb|EFO81136.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG6]
Length = 346
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 143/238 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++ +I++ LVVSIA Y G+GLSL DLIQEG+IGL+R ++F+ +G + STY W
Sbjct: 108 DARRHLIQANLRLVVSIAKKYVGRGLSLLDLIQEGNIGLMRAVEKFDHRKGNRFSTYATW 167
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QA+ R+IA + RTIRLP M+ V+++ + LS+ L R P+ EIA L
Sbjct: 168 WIRQAVTRSIAEQGRTIRLPVHMSESVSQVKRTSERLSQSLERQPSAEEIAIALGQPTER 227
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
+ +E R P+SL+ V D G T+ D +P D P QL++Q+L L L+E
Sbjct: 228 IERVLEAARRPVSLETPVGDEGEHTLGDFLPDDDLPTPGDFASAQLLRQDLCAALDHLNE 287
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE I+ L +GL + +E+GR L ++RER RQI AL +L+ ++ +L+ Y+
Sbjct: 288 RERRIIDLRYGLLDGRRRTLEEVGRTLGMTRERARQIEAEALRRLRSPDVGQHLRDYL 345
>gi|409123844|ref|ZP_11223239.1| RNA polymerase sigma-70 factor [Gillisia sp. CBA3202]
Length = 287
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 155/245 (63%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + + E++ ++ VVS+A YQ +GL+L DLI EG++GL++ AKRF+ RG+K
Sbjct: 42 KIKAGDDRALEKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAKRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQSHERPPSAEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ ++ V+ +++ + +S+D + + + D++ + P+R + + ++ E++
Sbjct: 162 LDMTINDVKESMKNSGRHVSMDAPLVEGEDSNLYDVLRSGESPNPDRELLHESLRTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ALETLTPREADVIRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|407474257|ref|YP_006788657.1| RNA polymerase factor sigma-70 RpoD [Clostridium acidurici 9a]
gi|407050765|gb|AFS78810.1| RNA polymerase factor sigma-70 RpoD [Clostridium acidurici 9a]
Length = 371
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 145/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ ++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ E+G+K STY
Sbjct: 131 DEEAKRKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYEKGFKFSTYA 190
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA+ +N+ V
Sbjct: 191 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQDLGREPTPEEIAKEMNLDV 250
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR + + P+SL+ + + + D IP D P ++K++L ++L TL
Sbjct: 251 DKVREIQKIAQEPVSLETPIGEEEDSHLGDFIPDDDAQAPAEAATFTMLKEQLIDVLDTL 310
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 311 TPREQKVLRLRFGLDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDFL 370
>gi|317473637|ref|ZP_07932926.1| RNA polymerase sigma factor RpoD [Anaerostipes sp. 3_2_56FAA]
gi|316898927|gb|EFV20952.1| RNA polymerase sigma factor RpoD [Anaerostipes sp. 3_2_56FAA]
Length = 364
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 124 DEEAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 183
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIAE ++I V
Sbjct: 184 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAEEMDIPV 243
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P L+K++L E+L TL
Sbjct: 244 DRVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLSEVLGTL 303
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 304 TEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 363
>gi|363580605|ref|ZP_09313415.1| RNA polymerase sigma-70 factor [Flavobacteriaceae bacterium HQM9]
gi|402492983|ref|ZP_10839740.1| RNA polymerase sigma-70 factor [Aquimarina agarilytica ZC1]
Length = 287
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 154/245 (62%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + + +++ ++ VVS+A YQ +GL+L DLI EG++GL++ AKRF+ RG+K
Sbjct: 42 RIKAGDERALDKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAKRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKTYAFLEQSHERPPSAEEIANE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ +S V+ +++ + +S+D + + + D++ + P+R + + ++ E++
Sbjct: 162 LDMTISDVKESMKNSGRHVSMDAPLVEGEDSNLYDVLRSGESPNPDRELMHESLRTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ALETLTPREADVIRLYFGLGNQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|354617029|ref|ZP_09034545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353218616|gb|EHB83339.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 464
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +G+K STY WWI+QAI RA+A+
Sbjct: 238 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMAD 297
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 298 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 357
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 358 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 417
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 418 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 463
>gi|313123889|ref|YP_004034148.1| RNA polymerase sigma factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280452|gb|ADQ61171.1| RNA polymerase sigma factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 372
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 148/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G++ DLIQEG++GL++ +F+ GYK
Sbjct: 127 RIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGYK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EI
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIGAE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ V+ VR ++ + P+SL+ + + + D I D PE+ +++K++L E
Sbjct: 247 MDLPVNKVREILKLCQEPVSLETPIGEEDDSNLGDFIEDKDAMSPEQHAANEMLKEQLAE 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TLS+RE ++LRL FGLD + +E+G+ ++RERIRQI AL KL+ + +
Sbjct: 307 VLDTLSDREEEVLRLRFGLDDGKARTLEEVGQHFEVTRERIRQIEAKALRKLRHPSRSSQ 366
Query: 374 LKVYM 378
L+ ++
Sbjct: 367 LRDFL 371
>gi|296171852|ref|ZP_06852951.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295893936|gb|EFG73705.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 503
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 259 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 318
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 319 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 378
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 379 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 438
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 439 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 497
Query: 374 LKVYM 378
L+ Y+
Sbjct: 498 LRDYL 502
>gi|90961886|ref|YP_535802.1| RNA polymerase sigma factor RpoD [Lactobacillus salivarius UCC118]
gi|90821080|gb|ABD99719.1| RNA polymerase sigma factor [Lactobacillus salivarius UCC118]
Length = 372
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +G+K
Sbjct: 127 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + + L R P EI
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPMPEEIGAE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L+
Sbjct: 247 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLES 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 366
Query: 374 LKVYM 378
LK ++
Sbjct: 367 LKDFL 371
>gi|400536812|ref|ZP_10800346.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
gi|400329825|gb|EJO87324.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
Length = 505
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 261 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 320
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 321 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 380
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 381 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 440
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 441 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 499
Query: 374 LKVYM 378
L+ Y+
Sbjct: 500 LRDYL 504
>gi|377562745|ref|ZP_09792113.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
gi|377530042|dbj|GAB37278.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
Length = 483
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 257 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 316
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 317 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPDKVLEIQQYAREPI 376
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 377 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 436
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 437 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 482
>gi|340794544|ref|YP_004760007.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
gi|340534454|gb|AEK36934.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
Length = 536
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 297 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 356
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 357 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITED 416
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 417 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 476
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 477 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 535
>gi|431794831|ref|YP_007221736.1| sigma-70 family RNA polymerase sigma factor [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785057|gb|AGA70340.1| RNA polymerase sigma factor, sigma-70 family [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 393
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 144/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 156 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYVKGFKFSTYATWW 215
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA ++I V V
Sbjct: 216 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIATQMDISVERV 275
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D IP D P L+K++L+E+L+TL+ R
Sbjct: 276 REIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPR 335
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK Y+
Sbjct: 336 EEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 392
>gi|281417615|ref|ZP_06248635.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum JW20]
gi|281409017|gb|EFB39275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum JW20]
Length = 358
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 149/246 (60%)
Query: 133 YKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
++I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+
Sbjct: 112 HRIEQGDAEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGF 171
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIA+
Sbjct: 172 KFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAK 231
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
+N+ V VR ++ ++ P+SL+ + + + D IP D P L+K++L
Sbjct: 232 EMNMPVEKVREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLV 291
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
++L TL+ RE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ +
Sbjct: 292 DVLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSK 351
Query: 373 NLKVYM 378
LK Y+
Sbjct: 352 KLKDYL 357
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 148/241 (61%), Gaps = 7/241 (2%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+ +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK STY Y
Sbjct: 90 KRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAY 149
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA + RTIRLP + + KI + L+++L R PT +EIA+ L +
Sbjct: 150 WWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPAEIAKELELEPL 209
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIP--GPDETMPERMVQKQLMKQELKELLQT 317
+R + R P+SLD V D +Q+++ GP PE ++ ++Q+L LL
Sbjct: 210 QIREYLNMARQPVSLDVRVGDNQDTELQEMLEDDGPS---PEYYTTQEFLRQDLNNLLAE 266
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
L+ ++ ++L L FGL+ +S ++G LSLSRER+RQ+ AL L++ N+K Y
Sbjct: 267 LTPQQREVLALRFGLEDGNELSLAKVGERLSLSRERVRQLEHQALAHLRRRRA--NVKEY 324
Query: 378 M 378
+
Sbjct: 325 V 325
>gi|308371101|ref|ZP_07423832.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308379284|ref|ZP_07485758.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308405944|ref|ZP_07494511.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|422813752|ref|ZP_16862124.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|308329814|gb|EFP18665.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308357496|gb|EFP46347.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308365045|gb|EFP53896.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|323718698|gb|EGB27860.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|379029013|dbj|BAL66746.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 530
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 286 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 345
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 346 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 405
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 406 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 465
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 466 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 524
Query: 374 LKVYM 378
L+ Y+
Sbjct: 525 LRDYL 529
>gi|440778267|ref|ZP_20957033.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436721370|gb|ELP45505.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 509
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 265 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 324
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 325 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 384
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 385 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 444
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 445 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 503
Query: 374 LKVYM 378
L+ Y+
Sbjct: 504 LRDYL 508
>gi|407275560|ref|ZP_11104030.1| RNA polymerase sigma factor [Rhodococcus sp. P14]
Length = 452
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 226 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 285
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 286 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 345
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 346 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 405
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 406 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 451
>gi|255325126|ref|ZP_05366232.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311739588|ref|ZP_07713423.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255297691|gb|EET77002.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311305404|gb|EFQ81472.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 490
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 251 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 310
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 311 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 370
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 371 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLS 430
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 431 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 489
>gi|153813734|ref|ZP_01966402.1| hypothetical protein RUMOBE_04167 [Ruminococcus obeum ATCC 29174]
gi|149830174|gb|EDM85267.1| RNA polymerase sigma factor RpoD [Ruminococcus obeum ATCC 29174]
Length = 330
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 90 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 149
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIAE + + V
Sbjct: 150 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAEEMKMPV 209
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P L+K++L E+L TL
Sbjct: 210 DRVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLIEVLGTL 269
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 270 TEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 329
>gi|402836975|ref|ZP_10885506.1| RNA polymerase sigma factor RpoD [Mogibacterium sp. CM50]
gi|402269991|gb|EJU19260.1| RNA polymerase sigma factor RpoD [Mogibacterium sp. CM50]
Length = 383
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 146/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ ++++++ S LVVSIA Y +GLS DLIQEG++GL++ +F+ +GYK STY
Sbjct: 143 DEDAKKKLCESNLRLVVSIAKRYLNRGLSFLDLIQEGNLGLIKAVDKFDYTKGYKFSTYA 202
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI R+IA+++RTIR+P M + K+ + L + L R PT EIA+ + I V
Sbjct: 203 TWWIRQAITRSIADQARTIRIPVHMVETINKLIRISRQLLQELGREPTSEEIAKEMGITV 262
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR + ++ P+SL+ + + + D IP D P ++K++L E+L TL
Sbjct: 263 EKVREIKKISQDPVSLETPIGEEEDSHLGDFIPDDDVPAPVEAAAYSMLKEQLMEVLDTL 322
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
SERE +L L FGL+ P + +E+G+ +++RERIRQI AL KL+ + L+ Y+
Sbjct: 323 SEREKKVLMLRFGLEDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLRDYL 382
>gi|384515838|ref|YP_005710930.1| RNA polymerase sigma factor A [Corynebacterium ulcerans 809]
gi|334697039|gb|AEG81836.1| RNA polymerase sigma factor A [Corynebacterium ulcerans 809]
Length = 533
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 294 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 353
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 354 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPQELAKEMDITEE 413
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 414 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 473
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 474 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 532
>gi|83815083|ref|YP_446059.1| RNA polymerase sigma-70 factor [Salinibacter ruber DSM 13855]
gi|83756477|gb|ABC44590.1| RNA polymerase sigma-70 factor [Salinibacter ruber DSM 13855]
Length = 313
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 152/239 (63%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+ ++ R+ VVS+A YQG+GLSL DLI EG+ GL++ AKRF+ RG+K +Y
Sbjct: 73 DEEALHKLCRANLRFVVSVAKKYQGQGLSLADLINEGNYGLIKAAKRFDETRGFKFISYA 132
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI++A+A +SR +RLP + G ++KI +A+ L + L R P E+AE L I V
Sbjct: 133 VWWIRQAILQALAEQSRVVRLPLNRIGTISKIRKASARLQQDLDRKPNIEELAEELEIDV 192
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR A++ T +S+D + ++ D++P D P+ + + +K +++ L L
Sbjct: 193 QKVREAMKHTSRHLSMDAPFNEEDDNSLLDVLPDEDNDSPDEEMLSESVKIDIERALSAL 252
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
+REA+I RL+FG+ + P++ +EIG+ L+RER+RQI+ AL KL+Q + +L+ +
Sbjct: 253 HDREAEITRLYFGIGREHPLTLEEIGKRFDLTRERVRQIKEKALRKLRQRHSKQDLQPH 311
>gi|1072017|gb|AAA81640.1| sigma factor [Mycobacterium bovis]
gi|1072019|gb|AAA81641.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 463
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 464 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 522
Query: 374 LKVYM 378
L+ Y+
Sbjct: 523 LRDYL 527
>gi|383782051|ref|YP_005466618.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
gi|381375284|dbj|BAL92102.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
Length = 282
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 145/243 (59%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
I+ + + ++ ++ + LVVSIA Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 38 IVAEGKAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 97
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M V ++ L+ L R P+ +EIA +
Sbjct: 98 STYATWWIRQAITRAMADQARTIRIPVHMVEQVNRMVRCRRDLAVSLGREPSIAEIATAM 157
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
++ V I R P+SLD AV + G + D + D P V + ++ E++ +
Sbjct: 158 DVPEFQVIELISYDREPVSLDQAVGEDGESALGDFVAAVDPNQPGEGVAQGELRSEVEIV 217
Query: 315 LQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L TLSERE+ ++RL FGLD + E+GR LSRERIRQI + + KL+ + L
Sbjct: 218 LATLSERESAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKVTMLKLRDPERASRL 277
Query: 375 KVY 377
+ Y
Sbjct: 278 EAY 280
>gi|167747159|ref|ZP_02419286.1| hypothetical protein ANACAC_01873 [Anaerostipes caccae DSM 14662]
gi|167654119|gb|EDR98248.1| RNA polymerase sigma factor RpoD [Anaerostipes caccae DSM 14662]
Length = 370
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 130 DEEAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 189
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIAE ++I V
Sbjct: 190 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPLPEEIAEEMDIPV 249
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P L+K++L E+L TL
Sbjct: 250 DRVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLSEVLGTL 309
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 310 TEREQKVLRLRFGLDDSRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 369
>gi|118465794|ref|YP_882772.1| RNA polymerase sigma factor [Mycobacterium avium 104]
gi|254776035|ref|ZP_05217551.1| RNA polymerase sigma factor [Mycobacterium avium subsp. avium ATCC
25291]
gi|118167081|gb|ABK67978.1| sigma factor MysA [Mycobacterium avium 104]
Length = 496
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 252 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 311
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 312 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 371
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 372 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 431
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 432 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 490
Query: 374 LKVYM 378
L+ Y+
Sbjct: 491 LRDYL 495
>gi|159903877|ref|YP_001551221.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889053|gb|ABX09267.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 313
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/251 (39%), Positives = 156/251 (62%), Gaps = 6/251 (2%)
Query: 122 ENGELDYNLVKY-----KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGS 176
E+G +D ++ +++ R ++ER++++ LVVS+A YQGKGL L DL+QEGS
Sbjct: 53 EDGSIDVKSEEFTSHQRRLIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGS 112
Query: 177 IGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNV 236
+GL R ++F+P RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ +A I + ++
Sbjct: 113 LGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLATIRKISSD 172
Query: 237 LSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDE 295
L+ +L MP+ +E+AE + I + + + SLD V D G + D+I
Sbjct: 173 LAHKLGAMPSRAELAEAMEIDAEELDSILRQALTTSSLDAPVNGDDGRSFLGDLIADSSL 232
Query: 296 TMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIR 355
P V++++ +++L L LSE+E +L+L FGL+G + EIGRLL +SRER+R
Sbjct: 233 EEPLDKVEQRIHQEQLGRWLTHLSEQEQHVLKLRFGLEGNERHTLAEIGRLLQVSRERVR 292
Query: 356 QIRGIALTKLQ 366
Q+ +L KL+
Sbjct: 293 QVELKSLRKLR 303
>gi|453382628|dbj|GAC82923.1| RNA polymerase sigma factor SigA [Gordonia paraffinivorans NBRC
108238]
Length = 527
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 301 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 360
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 361 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 420
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 421 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 480
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 481 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 526
>gi|409390110|ref|ZP_11241881.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
gi|403199937|dbj|GAB85115.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
Length = 515
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 289 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 348
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 349 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 408
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 409 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 468
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 469 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 514
>gi|377567668|ref|ZP_09796876.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
gi|377535208|dbj|GAB42041.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
Length = 520
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 294 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 353
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 354 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 413
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 414 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 473
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 474 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 519
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 150/239 (62%), Gaps = 3/239 (1%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 84 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 143
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R PT +E+A + +
Sbjct: 144 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPTVTELAGFVELPEE 203
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + +++ G D +PE V+ + +K +L++LL+ L
Sbjct: 204 EVKDLMCRARQPVSLEMKVGDGDDTELLELLAG-DGELPEEQVEVECLKGDLRDLLEQLP 262
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ + +LR+ +G+DG+ P+S I + L +SR+R R++ L L++ + L+ Y+
Sbjct: 263 DLQRRVLRMRYGMDGEEPMSLTGIAKSLRMSRDRTRRLEREGLEMLRRFD--GQLEAYV 319
>gi|15609840|ref|NP_217219.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|15842241|ref|NP_337278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CDC1551]
gi|31793875|ref|NP_856368.1| RNA polymerase sigma factor [Mycobacterium bovis AF2122/97]
gi|121638578|ref|YP_978802.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662544|ref|YP_001284067.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148823893|ref|YP_001288647.1| RNA polymerase sigma factor [Mycobacterium tuberculosis F11]
gi|167970074|ref|ZP_02552351.1| RNA polymerase sigma factor RpoD [Mycobacterium tuberculosis H37Ra]
gi|224991070|ref|YP_002645759.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798215|ref|YP_003031216.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 1435]
gi|254551759|ref|ZP_05142206.1| RNA polymerase sigma factor [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448358|ref|ZP_06438102.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289762874|ref|ZP_06522252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|294994205|ref|ZP_06799896.1| RNA polymerase sigma factor [Mycobacterium tuberculosis 210]
gi|297635311|ref|ZP_06953091.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 4207]
gi|297732307|ref|ZP_06961425.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN R506]
gi|306780885|ref|ZP_07419222.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|306790106|ref|ZP_07428428.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|306798608|ref|ZP_07436910.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|306804467|ref|ZP_07441135.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|306807495|ref|ZP_07444163.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|306968762|ref|ZP_07481423.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|307080806|ref|ZP_07489976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|313659640|ref|ZP_07816520.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN V2475]
gi|340627704|ref|YP_004746156.1| RNA polymerase sigma factor SIGA [Mycobacterium canettii CIPT
140010059]
gi|375295482|ref|YP_005099749.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|378772433|ref|YP_005172166.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|383308467|ref|YP_005361278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|385991988|ref|YP_005910286.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|385995609|ref|YP_005913907.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|385999483|ref|YP_005917782.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|392387335|ref|YP_005308964.1| sigA [Mycobacterium tuberculosis UT205]
gi|392431690|ref|YP_006472734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|397674612|ref|YP_006516147.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|424805043|ref|ZP_18230474.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|424948361|ref|ZP_18364057.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|449064770|ref|YP_007431853.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
gi|61234251|sp|P0A602.1|RPOD_MYCTU RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|61234258|sp|P0A603.1|RPOD_MYCBO RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|1072023|gb|AAA81643.1| sigma factor [Mycobacterium bovis]
gi|1072025|gb|AAA81644.1| sigma factor [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|1171102|gb|AAA86043.1| sigma factor MysA [Mycobacterium tuberculosis H37Rv]
gi|13882532|gb|AAK47092.1| RNA polymerase principal sigma factor SigA [Mycobacterium
tuberculosis CDC1551]
gi|31619469|emb|CAD94907.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium bovis
AF2122/97]
gi|121494226|emb|CAL72704.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506696|gb|ABQ74505.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148722420|gb|ABR07045.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis F11]
gi|224774185|dbj|BAH26991.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319718|gb|ACT24321.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
1435]
gi|289421316|gb|EFD18517.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289710380|gb|EFD74396.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|308326286|gb|EFP15137.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|308333457|gb|EFP22308.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|308341125|gb|EFP29976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|308346090|gb|EFP34941.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|308348951|gb|EFP37802.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|308353649|gb|EFP42500.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|308361450|gb|EFP50301.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|326904319|gb|EGE51252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|328457987|gb|AEB03410.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|339295563|gb|AEJ47674.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|339299181|gb|AEJ51291.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|340005894|emb|CCC45060.1| RNA polymerase sigma factor SIGA (sigma-A) [Mycobacterium canettii
CIPT 140010059]
gi|341602616|emb|CCC65292.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220530|gb|AEN01161.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|356594754|gb|AET19983.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|358232876|dbj|GAA46368.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|378545886|emb|CCE38164.1| sigA [Mycobacterium tuberculosis UT205]
gi|380722420|gb|AFE17529.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|392053099|gb|AFM48657.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|395139517|gb|AFN50676.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|440582180|emb|CCG12583.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium
tuberculosis 7199-99]
gi|444896240|emb|CCP45501.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|449033278|gb|AGE68705.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
Length = 528
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 463
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 464 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 522
Query: 374 LKVYM 378
L+ Y+
Sbjct: 523 LRDYL 527
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/247 (38%), Positives = 149/247 (60%), Gaps = 7/247 (2%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I+ + + +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 84 QIVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYK 143
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA + RTIRLP + + KI + L+++ R PT +EIA
Sbjct: 144 FSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKFGRSPTPTEIAHE 203
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDII--PGPDETMPERMVQKQLMKQEL 311
L + +R + R P+SLD V D +Q+++ GP PE ++ ++Q+L
Sbjct: 204 LELEPMQIREYLNMARQPVSLDVKVGDNQDTELQEMLEDEGPS---PEYYTTQEFLRQDL 260
Query: 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
LL L+ ++ +L L FGL+ +S ++G L+LSRER+RQ+ AL L++
Sbjct: 261 NNLLAELTPQQRQVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRRRRA- 319
Query: 372 NNLKVYM 378
N+K Y+
Sbjct: 320 -NVKEYV 325
>gi|392395044|ref|YP_006431646.1| sigma-70 family RNA polymerase sigma factor [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390526122|gb|AFM01853.1| RNA polymerase sigma factor, sigma-70 family [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 394
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 144/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 157 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYVKGFKFSTYATWW 216
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA ++I V V
Sbjct: 217 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQMDISVERV 276
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D IP D P L+K++L+E+L+TL+ R
Sbjct: 277 REIMKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPR 336
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK Y+
Sbjct: 337 EEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 393
>gi|433627819|ref|YP_007261448.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
gi|432155425|emb|CCK52675.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
Length = 528
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 463
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 464 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 522
Query: 374 LKVYM 378
L+ Y+
Sbjct: 523 LRDYL 527
>gi|427727607|ref|YP_007073844.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427363526|gb|AFY46247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 416
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 145/238 (60%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 176 QAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 235
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A L + S
Sbjct: 236 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEMTPSQ 295
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L+ LL L+
Sbjct: 296 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDGVTPEEMLMRESLQRDLQHLLADLTS 354
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 355 RERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 412
>gi|319953761|ref|YP_004165028.1| RNA polymerase, sigma 70 subunit, rpod subfamily [Cellulophaga
algicola DSM 14237]
gi|319422421|gb|ADV49530.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cellulophaga
algicola DSM 14237]
Length = 287
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 150/235 (63%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA+ L++ V V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQAHERQPSPEEIAKELDMTVEDVKQ 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + D + D++ + P+R + + ++ E++ L+TL+ REA
Sbjct: 172 SLKNSGRHVSMDAPLIDGEDSNLYDVLRSGESPNPDRELLHESLRTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL GQ ++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLAGQHSMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/248 (39%), Positives = 152/248 (61%), Gaps = 4/248 (1%)
Query: 130 LVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPE 189
L+K K L R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P
Sbjct: 100 LLKRK-LSSGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPT 158
Query: 190 RGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSE 249
RGYK STY YWWI+Q I RAIA KSRTIRLP + + K+ + LS+ L R PT SE
Sbjct: 159 RGYKFSTYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTLSE 218
Query: 250 IAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQ 309
+A + + V+ + R R P+SL+ V D + D++ G D T+P V + ++
Sbjct: 219 LAVCVELPEEEVKDLLCRARQPVSLETKVGDGEDTELLDLLQG-DGTLPAESVDSECLRG 277
Query: 310 ELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369
+++ LL+ L E + +L + +G+D + P+S IGR+L +SR+RIR + L L++ +
Sbjct: 278 DMRALLEQLPELQRSVLSMRYGIDVEEPMSLTGIGRILGMSRDRIRNLERDGLASLRRLS 337
Query: 370 ILNNLKVY 377
+ +K Y
Sbjct: 338 --DQVKDY 343
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 142/226 (62%), Gaps = 5/226 (2%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK STY YWW
Sbjct: 93 AKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPTRGYKFSTYAYWW 152
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA ++RTIRLP + + KI + L++RL R P+ +EIA L + S +
Sbjct: 153 IRQAITRAIAQQARTIRLPIHITEKLNKIKKIQRELAQRLGRSPSPAEIATELELEPSQI 212
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDII--PGPDETMPERMVQKQLMKQELKELLQTLS 319
R + R P+SLD V D +QD++ GP PE + ++ ++Q+L L+ L+
Sbjct: 213 REYLNLARQPVSLDVRVGDNQDTELQDLLEDEGPS---PEHYMTQESLRQDLDHLMAELT 269
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
++ ++L L FGL+ +S ++G L+LSRER+RQ+ AL L
Sbjct: 270 PQQREVLNLRFGLEDGNELSLAKVGERLNLSRERVRQLEHQALAHL 315
>gi|51891726|ref|YP_074417.1| RNA polymerase sigma factor RpoD [Symbiobacterium thermophilum IAM
14863]
gi|51855415|dbj|BAD39573.1| RNA polymerase major sigma factor [Symbiobacterium thermophilum IAM
14863]
Length = 388
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 145/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ ++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 148 DEEAKRKLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYA 207
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIA +++I V
Sbjct: 208 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVTRQLVQELGREPTPEEIAAVMDIPV 267
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR + + P+SL+ + + + D I D P L+K++L+E+L++L
Sbjct: 268 ERVREIQKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFTLLKEQLEEVLESL 327
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE +LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK Y+
Sbjct: 328 TPREEKVLRLRFGLDDGRARTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 387
>gi|365902695|ref|ZP_09440518.1| RNA polymerase sigma factor RpoD [Lactobacillus malefermentans KCTC
3548]
Length = 410
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 147/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI E E+++++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 165 KIEQGEEEAKQQLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 224
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EI
Sbjct: 225 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPAPEEIGAE 284
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L+
Sbjct: 285 MDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDNDATSPADHAAYELLKEQLEG 344
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ +
Sbjct: 345 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 404
Query: 374 LKVYM 378
LK ++
Sbjct: 405 LKDFL 409
>gi|326384438|ref|ZP_08206118.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
gi|326196783|gb|EGD53977.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
Length = 466
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 240 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 299
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 300 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 359
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+++L TLSEREA ++RL FGL
Sbjct: 360 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLDTLSEREAGVVRLRFGL 419
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 420 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 465
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 148/232 (63%), Gaps = 3/232 (1%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
I+ + R +++++I + LVVSIA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 92 IINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKF 151
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY YWWI+QAI RAIA SRTIRLP + + KI L ++ R T +EIA+ L
Sbjct: 152 STYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKAL 211
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELKE 313
++ S +R + +RHP+SLD V D +QD++ DE+ + V +QL++Q+LK+
Sbjct: 212 DLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLL--EDESASADSYVTQQLLRQDLKD 269
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
++ L+ ++ ++L L +GL+ +S ++G +++SRER+RQ+ AL L
Sbjct: 270 MMADLTPQQREVLTLRYGLNDGKEMSLSKVGVQMNISRERVRQLENQALNHL 321
>gi|189219555|ref|YP_001940196.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
gi|189186413|gb|ACD83598.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Methylacidiphilum infernorum V4]
Length = 623
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 134/226 (59%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LV+SIA Y +GLS DLIQEG++GL++ ++F RGYK STY WWI+QAI R+IA+
Sbjct: 392 LVISIAKKYSNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTYATWWIRQAITRSIAD 451
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R PT EIA+ + V +R I+ +HPI
Sbjct: 452 QARTIRIPVHMIETINKLMRVQKQLIQELGREPTPEEIADETQMSVDRIRTIIKMAQHPI 511
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL V + T D I P M L+++++K++L TL+ERE ++ FGL
Sbjct: 512 SLQAQVGESEDTTFGDFIEDKAAENPSEMTGYSLLREKIKDVLGTLTERERTVIEQRFGL 571
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
P + +E+G+ ++RERIRQI AL K++ L +LK ++
Sbjct: 572 LDGYPRTLEEVGKQFRVTRERIRQIEAKALRKMRHPTRLRHLKGFL 617
>gi|433642889|ref|YP_007288648.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
gi|432159437|emb|CCK56741.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
Length = 528
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 463
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 464 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 522
Query: 374 LKVYM 378
L+ Y+
Sbjct: 523 LRDYL 527
>gi|33240812|ref|NP_875754.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238341|gb|AAQ00407.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 313
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 144/228 (63%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++++ LVVS+A YQGKGL L DL+QEGS+GL R ++F+P RGYK STY +
Sbjct: 76 RRAKERMMKANLRLVVSVAKKYQGKGLELLDLVQEGSLGLERAVEKFDPTRGYKFSTYAF 135
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q++ RAIA +SRTIRLP ++ +A I + + L+ +L MP EIAE ++I V
Sbjct: 136 WWIRQSMTRAIACQSRTIRLPVHLSERLATIRKVSLDLAHKLGAMPNRLEIAEEMDIEVE 195
Query: 260 TVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ + + SLD V D G + D+I P V++ + +++L L L
Sbjct: 196 ELDSILRQALTTSSLDAPVNGDDGRSFLGDLIADSSVEEPLDKVEQSIHQEQLGRWLTHL 255
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
SE+E +L+L FGL+G + EIGRLL +SRER+RQ+ +L KL+
Sbjct: 256 SEQEQHVLKLRFGLEGNDRHTLAEIGRLLEVSRERVRQVELKSLRKLR 303
>gi|167768032|ref|ZP_02440085.1| hypothetical protein CLOSS21_02575 [Clostridium sp. SS2/1]
gi|317498375|ref|ZP_07956670.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
5_1_63FAA]
gi|429761231|ref|ZP_19293661.1| RNA polymerase sigma factor RpoD [Anaerostipes hadrus DSM 3319]
gi|167710361|gb|EDS20940.1| RNA polymerase sigma factor RpoD [Clostridium sp. SS2/1]
gi|291561030|emb|CBL39830.1| RNA polymerase, sigma 70 subunit, RpoD [butyrate-producing
bacterium SSC/2]
gi|316894269|gb|EFV16456.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium
5_1_63FAA]
gi|429184255|gb|EKY25278.1| RNA polymerase sigma factor RpoD [Anaerostipes hadrus DSM 3319]
Length = 363
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 141/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY WWI+QAI RAIA+
Sbjct: 137 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 196
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ + L + L R P+ EIAE ++I V VR ++ ++ P+
Sbjct: 197 QARTIRIPVHMVETINKLIRVSRQLLQELGREPSPEEIAEEMDIPVERVREILKISQEPV 256
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I + +P L+K++L E+L TL+ERE +LRL FGL
Sbjct: 257 SLETPIGEEEDSHLGDFIQDENVPVPADAAAFTLLKEQLDEVLGTLTEREQKVLRLRFGL 316
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 317 DDSRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 362
>gi|78212423|ref|YP_381202.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196882|gb|ABB34647.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 312
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/246 (40%), Positives = 154/246 (62%), Gaps = 3/246 (1%)
Query: 122 ENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLR 181
E+GEL + ++L R ++ER++++ LVVS+A YQGKGL L DLIQEGS+GL R
Sbjct: 59 EDGEL--TTAQRRLLRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLER 116
Query: 182 GAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRL 241
++F+P RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ + I + + L+ +L
Sbjct: 117 AVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKL 176
Query: 242 RRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDETMPER 300
MP+ EIAE ++I + + + + SLD V + G + D+I P
Sbjct: 177 GAMPSRVEIAEAMDIPLDELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADSSLDEPLD 236
Query: 301 MVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360
+V++++ ++L L LSE+E +LR+ FGL+G + EIGRL+ +SRER+RQ+
Sbjct: 237 IVEQRIHHEQLGRWLSHLSEQEQHVLRMRFGLEGNERHTLAEIGRLMEVSRERVRQVELK 296
Query: 361 ALTKLQ 366
AL KL+
Sbjct: 297 ALRKLR 302
>gi|374602363|ref|ZP_09675356.1| RpoD subfamily RNA polymerase sigma-70 factor [Paenibacillus
dendritiformis C454]
gi|374391965|gb|EHQ63294.1| RpoD subfamily RNA polymerase sigma-70 factor [Paenibacillus
dendritiformis C454]
Length = 374
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 147/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY W
Sbjct: 136 EAKKRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHSKGYKFSTYATW 195
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA + + V
Sbjct: 196 WIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEEIAAEMELSVEK 255
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I + P +L+K++L+++L TL+E
Sbjct: 256 VREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTE 315
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 316 REENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
>gi|295110289|emb|CBL24242.1| RNA polymerase, sigma 70 subunit, RpoD [Ruminococcus obeum A2-162]
Length = 376
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 136 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 195
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIAE + + V
Sbjct: 196 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAEEMKMPV 255
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P L+K++L E+L TL
Sbjct: 256 ERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLIEVLGTL 315
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 316 TEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 375
>gi|363420387|ref|ZP_09308479.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
gi|359735629|gb|EHK84586.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
Length = 457
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 231 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 290
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 291 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 350
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 351 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 410
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 411 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 456
>gi|343924630|ref|ZP_08764174.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
gi|343765430|dbj|GAA11100.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
Length = 470
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 244 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 303
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 304 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 363
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 364 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 423
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 424 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 469
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 148/232 (63%), Gaps = 3/232 (1%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
I+ + R +++++I + LVVSIA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 90 IINRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKF 149
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY YWWI+QAI RAIA SRTIRLP + + KI L ++ R T +EIA+ L
Sbjct: 150 STYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKAL 209
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELKE 313
++ S +R + +RHP+SLD V D +QD++ DE+ + V +QL++Q+LK+
Sbjct: 210 DLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLL--EDESASADSYVTQQLLRQDLKD 267
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
++ L+ ++ ++L L +GL+ +S ++G +++SRER+RQ+ AL L
Sbjct: 268 MMADLTPQQREVLTLRYGLNDGKEMSLSKVGVQMNISRERVRQLENQALNHL 319
>gi|118469122|ref|YP_887090.1| RNA polymerase sigma factor [Mycobacterium smegmatis str. MC2 155]
gi|399987104|ref|YP_006567453.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
gi|555680|gb|AAA85642.1| sigma factor MysA [Mycobacterium smegmatis]
gi|118170409|gb|ABK71305.1| sigma factor MysA [Mycobacterium smegmatis str. MC2 155]
gi|399231665|gb|AFP39158.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
Length = 466
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 222 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 281
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 282 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 341
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 342 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 401
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 402 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 460
Query: 374 LKVYM 378
L+ Y+
Sbjct: 461 LRDYL 465
>gi|379709850|ref|YP_005265055.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
gi|374847349|emb|CCF64419.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
Length = 454
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 228 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 287
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 288 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 347
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 348 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 407
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 408 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 453
>gi|365904101|ref|ZP_09441860.1| RNA polymerase sigma factor RpoD [Lactobacillus versmoldensis KCTC
3814]
Length = 383
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 148/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + E+++++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ G+K
Sbjct: 138 KIEQGDEEAKQKLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRLGFK 197
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EI
Sbjct: 198 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAE 257
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ + VR ++ + P+SL+ + + + D I D T PE +L+K++L+
Sbjct: 258 MDMATTKVRDILKIAQEPVSLETPIGEEDDSHLGDFIEDSDATSPEDHASYELLKEQLEN 317
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 318 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 377
Query: 374 LKVYM 378
LK ++
Sbjct: 378 LKDFL 382
>gi|433635765|ref|YP_007269392.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
gi|432167358|emb|CCK64869.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
Length = 528
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 463
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 464 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 522
Query: 374 LKVYM 378
L+ Y+
Sbjct: 523 LRDYL 527
>gi|340794551|ref|YP_004760014.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
gi|340534461|gb|AEK36941.1| RNA polymerase sigma factor B [Corynebacterium variabile DSM 44702]
Length = 397
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/247 (38%), Positives = 145/247 (58%), Gaps = 1/247 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
KIL +E R ++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+
Sbjct: 151 KILAREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 210
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + + L R T+ E+AE
Sbjct: 211 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAE 270
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I S + ++++R P+SLD V + D I D T E V L +++
Sbjct: 271 ESGIDESKIETLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSDSTDAEAAVVASLRHSDVR 330
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TL ERE D+++L +GLD P + +IGR LSRER+RQI + KL++
Sbjct: 331 AVLDTLEEREQDVIKLRYGLDDGMPRTLDQIGRSFGLSRERVRQIEREVMAKLREGERAE 390
Query: 373 NLKVYMV 379
L+ Y V
Sbjct: 391 KLREYAV 397
>gi|148243538|ref|YP_001228695.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147851848|emb|CAK29342.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 370
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/268 (38%), Positives = 159/268 (59%), Gaps = 17/268 (6%)
Query: 116 SDFLDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEG 175
++ LD G+L L+ R ++ER+I++ LVV++A YQ +G+ L DL+QEG
Sbjct: 111 AELLDMSPGDLQRQLLHG------RRAKERMIQANLRLVVAVAKKYQHRGMELLDLVQEG 164
Query: 176 SIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANN 235
++GL RG ++++P RG++ STY YWWI+Q I RAIA +SRTIRLP + + +I +A
Sbjct: 165 TLGLERGVEKYDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKKAQR 224
Query: 236 VLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAV-----TDRGCMTMQDII 290
++ RL R T ++++ L + VR + R +SLD V T+ G + ++D +
Sbjct: 225 DIASRLGRTATLKDLSQELQLSEEVVRQTLMRVPRSVSLDTRVGRDMDTELGDL-LEDGM 283
Query: 291 PGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLS 350
P PE+ + ++ + +L LL LS REA ++RL FGLD TP + EIG+ L LS
Sbjct: 284 P-----TPEQRLTREKLHDDLLVLLNELSGREARVIRLRFGLDDDTPQTLAEIGKTLDLS 338
Query: 351 RERIRQIRGIALTKLQQTNILNNLKVYM 378
RER+RQI AL KL+ ++ YM
Sbjct: 339 RERVRQIESRALHKLRLPERRGRVRDYM 366
>gi|404258479|ref|ZP_10961798.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
gi|403402993|dbj|GAC00208.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
Length = 475
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 249 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 308
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 309 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 368
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 369 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 428
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 429 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 474
>gi|375142599|ref|YP_005003248.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium
rhodesiae NBB3]
gi|359823220|gb|AEV76033.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
rhodesiae NBB3]
Length = 528
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 463
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 464 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 522
Query: 374 LKVYM 378
L+ Y+
Sbjct: 523 LRDYL 527
>gi|237785650|ref|YP_002906355.1| RNA polymerase sigma factor [Corynebacterium kroppenstedtii DSM
44385]
gi|237758562|gb|ACR17812.1| RNA polymerase sigma factor A [Corynebacterium kroppenstedtii DSM
44385]
Length = 621
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 382 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 441
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI R++A+++RTIR+P M ++ K+ L + L R PT E+A ++I
Sbjct: 442 WWIRQAITRSMADQARTIRIPVHMVEVINKLGRIQRELLQDLSREPTPEELAREMDITED 501
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TL+
Sbjct: 502 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLKTLT 561
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 562 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 620
>gi|326335966|ref|ZP_08202143.1| RNA polymerase sigma-70 factor [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325691930|gb|EGD33892.1| RNA polymerase sigma-70 factor [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 287
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 155/245 (63%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I ++ + ER+ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 RIKAGDKVALERLTKANLRFVVSVAKQYQNQGLTLPDLINEGNMGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + L + R+P+ EIA
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKMYAYLEQTHERIPSAEEIARE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ VS V+ +++ + IS+D + + + D++ + P++ + + +K E++
Sbjct: 162 LDMSVSDVKESMKNSGRHISMDAPLVEGEDSNLYDVLRSGESPNPDKELMHESLKTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ALETLTPREADVIRLYFGLGENYPMTLEEIGETFELTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|427722866|ref|YP_007070143.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
gi|427354586|gb|AFY37309.1| RNA polymerase, sigma subunit, RpsC/SigC [Leptolyngbya sp. PCC
7376]
Length = 396
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 149/237 (62%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R +F+P +GY+ STY YWW
Sbjct: 157 AKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVDKFDPTKGYRFSTYAYWW 216
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A +S+ P+ ++A++LN+ + V
Sbjct: 217 IRQGITRAIATQSRTIRLPVHVTEKLNKIKKAQRQISQTQGCTPSLEDVAKVLNMTAAQV 276
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R +++ +SL+ V + D++ D + E +V++ L + +L+ LL L++R
Sbjct: 277 REVLQKVPRSVSLEIRVGQDRDTELGDLLETKDASPEENLVRESLQR-DLRNLLAELTDR 335
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++++L +GLD S EIGR+L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 336 EQEVIQLRYGLDDGKTHSLAEIGRVLELSRERVRQIEAKALQKLRQPKRRNLMRDYL 392
>gi|226185420|dbj|BAH33524.1| RNA polymerase sigma factor SigA [Rhodococcus erythropolis PR4]
Length = 452
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 226 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 285
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 286 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 345
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 346 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 405
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 406 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 451
>gi|220907205|ref|YP_002482516.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863816|gb|ACL44155.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 455
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 144/237 (60%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YWW
Sbjct: 216 AKEHMIQANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 275
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A +S+ P+ +IA L + V V
Sbjct: 276 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPSIEDIATELEMTVPQV 335
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + D++ D+ PE M+ ++ + +EL++LL L+ R
Sbjct: 336 RELLVRVPRSVSLETKVGKDKDTELGDLLE-TDDLSPEEMMMRESLHRELEKLLADLTSR 394
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D++ + FGL S +IGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 395 ERDVISMRFGLGDGHAYSLADIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 451
>gi|433631804|ref|YP_007265432.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
gi|432163397|emb|CCK60805.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
Length = 520
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 276 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 335
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 336 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 395
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 396 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 455
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 456 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 514
Query: 374 LKVYM 378
L+ Y+
Sbjct: 515 LRDYL 519
>gi|255535549|ref|YP_003095920.1| RNA polymerase sigma factor RpoD [Flavobacteriaceae bacterium
3519-10]
gi|255341745|gb|ACU07858.1| RNA polymerase sigma factor RpoD [Flavobacteriaceae bacterium
3519-10]
Length = 294
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 157/245 (64%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI +R + E++I++ VVS++ YQ +GLSL DLI EG++GL++ AKR++ RG+K
Sbjct: 48 KIRAGDRVALEKLIKANLRFVVSVSKQYQNQGLSLPDLINEGNLGLMKAAKRYDETRGFK 107
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI +A L + R P+ E+AE+
Sbjct: 108 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKAYAHLEQENERPPSPEELAEV 167
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ ++ +++ + +S+D + + + D++ + P++ + + ++ E++
Sbjct: 168 LDMSEDDIKESMKNSGRHLSMDAPLVEGEDSNLYDVLRSGESPSPDKELMLESLQIEIER 227
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LQTL+ READ++RL+FGL+G+ P++ +EIG L+RER+RQI+ A+ +L+
Sbjct: 228 ALQTLTPREADLVRLYFGLNGKHPMTLEEIGETFDLTRERVRQIKEKAIKRLKHNTRSKI 287
Query: 374 LKVYM 378
LK Y+
Sbjct: 288 LKSYL 292
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/233 (40%), Positives = 145/233 (62%), Gaps = 3/233 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+IL R +++++I + LVVSIA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 90 RILDCGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 149
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWW++QAI RAIA RTIRLP + + KI L ++ R PT +EIAE
Sbjct: 150 FSTYAYWWVRQAITRAIAQNGRTIRLPIHITEKLNKIKRVQRDLVQKYGRNPTPTEIAEA 209
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELK 312
L + S +R + +RHPISLD V D +Q+++ DET + V +L++Q+LK
Sbjct: 210 LELEPSQIREYLLASRHPISLDLRVGDNQDTELQELL--EDETASADNYVTHELLRQDLK 267
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
L+ L+ ++ +++ L +GL+ +S ++G +S+SRER+RQ+ AL L
Sbjct: 268 SLIDELTPQQREVILLRYGLEDGKELSLSKVGARMSISRERVRQLENQALNHL 320
>gi|392416014|ref|YP_006452619.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
gi|390615790|gb|AFM16940.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
Length = 496
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 252 ICRDGDKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 311
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 312 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 371
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 372 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 431
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 432 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 490
Query: 374 LKVYM 378
L+ Y+
Sbjct: 491 LRDYL 495
>gi|124024683|ref|YP_001018990.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123964969|gb|ABM79725.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 344
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/236 (40%), Positives = 144/236 (61%), Gaps = 2/236 (0%)
Query: 132 KYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
++KI +R +++R++ + LVVS+A YQ +GL L DL+QEG+IGL R +F+P G
Sbjct: 101 RHKIRMGKR-ARDRMMSANLRLVVSVAKKYQNQGLELLDLVQEGAIGLERAVDKFDPAMG 159
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
YK STY YWWI+Q + RAI N +RTIRLP ++ ++K+ + LS R R P E+A
Sbjct: 160 YKFSTYAYWWIRQGMTRAIDNSARTIRLPIHISEKLSKMRRISRELSHRFGRQPNRLELA 219
Query: 252 EMLNIHVSTVRLAIERTRHPISLDG-AVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
+ I + I ++ SLD A + T+ ++IP P+ P + + + K+
Sbjct: 220 HAMGIQPQDLEDLIAQSAPCASLDAHARGEEDRSTLGELIPDPNGAEPMEGLDRSIQKEH 279
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
L L L+ERE ILRL FGLDG+ P++ EIGR +S+SRER+RQ+ A+ KL+
Sbjct: 280 LGGWLSQLNEREQKILRLRFGLDGEEPLTLAEIGRQISVSRERVRQLEAKAILKLR 335
>gi|441513656|ref|ZP_20995484.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
gi|441451602|dbj|GAC53445.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
Length = 472
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 246 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 305
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 306 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 365
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 366 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 425
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 426 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 471
>gi|387876811|ref|YP_006307115.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|443306603|ref|ZP_21036391.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
gi|386790269|gb|AFJ36388.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|442768167|gb|ELR86161.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
Length = 501
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 257 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 316
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 317 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 376
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 377 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 436
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 437 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 495
Query: 374 LKVYM 378
L+ Y+
Sbjct: 496 LRDYL 500
>gi|167772125|ref|ZP_02444178.1| hypothetical protein ANACOL_03499 [Anaerotruncus colihominis DSM
17241]
gi|167665923|gb|EDS10053.1| RNA polymerase sigma factor RpoD [Anaerotruncus colihominis DSM
17241]
Length = 361
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 147/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY W
Sbjct: 123 DARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYATW 182
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ + +++L + PT EI+ L++ V
Sbjct: 183 WIRQAITRAIADQARTIRIPVHMVETINKVKKVSSLLLHKNGHEPTAEEISAELDMPVDK 242
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + + P+SL+ + + + D IP D P+ L++++L E+LQTL+
Sbjct: 243 VREIMRVAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPDTAASHTLLREQLSEVLQTLTP 302
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LRL FGL+ + +E+GR +++RERIRQI AL KL+ + LK ++
Sbjct: 303 REEKVLRLRFGLEDGRSRTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKKLKDFL 360
>gi|383819214|ref|ZP_09974490.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
gi|383337185|gb|EID15566.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
Length = 472
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 228 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 287
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 288 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 347
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 348 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 407
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 408 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 466
Query: 374 LKVYM 378
L+ Y+
Sbjct: 467 LRDYL 471
>gi|359767847|ref|ZP_09271629.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|378717657|ref|YP_005282546.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
gi|359314763|dbj|GAB24462.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|375752360|gb|AFA73180.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
Length = 483
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 257 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 316
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 317 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 376
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 377 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 436
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 437 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 482
>gi|385815882|ref|YP_005852273.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
gi|325125919|gb|ADY85249.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 372
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 148/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G++ DLIQEG++GL++ +F+ G+K
Sbjct: 127 RIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGFK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EIA
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIAAE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ V VR ++ + P+SL+ + + + D I D PE+ +++K++L E
Sbjct: 247 MDLPVKKVREILKICQEPVSLETPIGEEDDSNLGDFIEDKDAMSPEQHAANEMLKEQLAE 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TLS+RE ++LRL FGLD + +E+G+ ++RERIRQI AL KL+ + +
Sbjct: 307 VLDTLSDREEEVLRLRFGLDDGKSRTLEEVGQHFEVTRERIRQIEAKALRKLRHPSRSSQ 366
Query: 374 LKVYM 378
L+ ++
Sbjct: 367 LRDFL 371
>gi|256004390|ref|ZP_05429371.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum DSM 2360]
gi|385778673|ref|YP_005687838.1| RpoD subfamily RNA polymerase sigma-70 subunit [Clostridium
thermocellum DSM 1313]
gi|419722973|ref|ZP_14250109.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum AD2]
gi|419724679|ref|ZP_14251738.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum YS]
gi|255991674|gb|EEU01775.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum DSM 2360]
gi|316940353|gb|ADU74387.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
thermocellum DSM 1313]
gi|380771898|gb|EIC05759.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum YS]
gi|380781030|gb|EIC10692.1| RNA polymerase sigma factor RpoD [Clostridium thermocellum AD2]
Length = 358
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 145/238 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY W
Sbjct: 120 EAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATW 179
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIA+ +N+ V
Sbjct: 180 WIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAKEMNMPVEK 239
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ ++ P+SL+ + + + D IP D P L+K++L ++L TL+
Sbjct: 240 VREIMKISQEPVSLETPIGEEEDSHLGDFIPDDDAPAPSEAAAFTLLKEQLVDVLDTLTP 299
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 300 REEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 357
>gi|23978335|dbj|BAC21137.1| principal sigma factor [Phormidium sp. IAM M-99]
Length = 203
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 134/204 (65%), Gaps = 1/204 (0%)
Query: 147 IRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAI 206
++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WWI+QAI
Sbjct: 1 VQSNFRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 207 IRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIE 266
RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + + +R +
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAK 120
Query: 267 RTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADIL 326
+ PISL+ + + D I ET PE V K L++++L+ +L TLS RE D+L
Sbjct: 121 SAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEGVLATLSPREKDVL 179
Query: 327 RLHFGLDGQTPVSCKEIGRLLSLS 350
RLH+GLD + +EIG++ +++
Sbjct: 180 RLHYGLDDGRMKTLEEIGQIFNVT 203
>gi|418053337|ref|ZP_12691407.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
gi|353178512|gb|EHB44091.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
Length = 319
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 135/225 (60%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 93 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMAD 152
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A + + L R TD E+AE I V + +E +R P+
Sbjct: 153 QSRTIRLPVHLVEQVNKLARIKREMHQSLGREATDDELAEESGIPVEKINDLLEHSRDPV 212
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + D I + E V +L+ +++ +L TL ERE ++RL FGL
Sbjct: 213 SLDMPVGSDEEAPLGDFIEDAEAMSAENAVIAELLHTDIRHVLATLDEREQQVIRLRFGL 272
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI ++KL+ + + L+ Y
Sbjct: 273 DDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRNGDRADRLRSY 317
>gi|384098224|ref|ZP_09999343.1| RNA polymerase sigma-70 factor [Imtechella halotolerans K1]
gi|383836370|gb|EID75783.1| RNA polymerase sigma-70 factor [Imtechella halotolerans K1]
Length = 287
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 156/245 (63%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I ++ + E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 RIKAGDQRALEKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKTYAFLEQAHERTPSAEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ V+ V+ +++ + +S+D + + + D++ + P+R + + ++ E++
Sbjct: 162 LDMTVNDVKESMKNSGRHVSMDAPLVEGEDSNLYDVLRSGESPNPDRELLHESLRTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ALETLTPREADVIRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|407647061|ref|YP_006810820.1| RNA polymerase sigma factor [Nocardia brasiliensis ATCC 700358]
gi|407309945|gb|AFU03846.1| RNA polymerase sigma factor [Nocardia brasiliensis ATCC 700358]
Length = 457
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 231 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 290
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 291 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 350
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 351 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 410
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 411 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 456
>gi|339632715|ref|YP_004724357.1| RNA polymerase sigma factor SigA [Mycobacterium africanum GM041182]
gi|339332071|emb|CCC27777.1| RNA polymerase sigma factor SIGA (SIGMA-A) [Mycobacterium africanum
GM041182]
Length = 528
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 302 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 361
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 362 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 421
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 422 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGL 481
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 482 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 527
>gi|329769784|ref|ZP_08261185.1| RNA polymerase sigma factor rpoD [Gemella sanguinis M325]
gi|328838146|gb|EGF87764.1| RNA polymerase sigma factor rpoD [Gemella sanguinis M325]
Length = 362
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 144/227 (63%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ E+G+K STY WWI+QAI RAIA+
Sbjct: 136 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYEKGFKFSTYATWWIRQAITRAIAD 195
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + ++ L + L R P EIA+ +N+ VR ++ + P+
Sbjct: 196 QARTIRIPVHMVETINRLIRVQRQLLQDLGREPKPEEIAKKMNMTPDKVREILKIAQEPV 255
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I + P +L+K++L+E+L+TL++RE ++L+L FGL
Sbjct: 256 SLETPIGEEDDSHLGDFIEDKEAQSPVEHAANELLKEQLEEILETLTDREENVLKLRFGL 315
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DG+T + +E+G ++RERIRQI A+ KL+ + LN LK +M
Sbjct: 316 KDGKTH-TLEEVGSAFGVTRERIRQIEAKAIRKLKHPSKLNKLKGFM 361
>gi|328948111|ref|YP_004365448.1| RpoD subfamily RNA polymerase sigma-70 subunit [Treponema
succinifaciens DSM 2489]
gi|328448435|gb|AEB14151.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Treponema
succinifaciens DSM 2489]
Length = 655
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/326 (35%), Positives = 179/326 (54%), Gaps = 22/326 (6%)
Query: 63 TDAAALASA----AVRT--AKDAVSFANGAEEVCFDDGECESVLKMMRRRSRRKKRTKES 116
TDA L S A+RT AK A A+E+ D E + + RK R E
Sbjct: 340 TDAVGLRSIGRRLAIRTESAKLEKELAMSADEIRSDYTEIQKI--------DRKLRELEY 391
Query: 117 DFLDKENGELDYNLVKYKILCKER----ESQERIIRSYRSLVVSIATGYQGKGLSLKDLI 172
DF EN +D L K + + R +++ R+I + LVVSIA Y +GL L DLI
Sbjct: 392 DF---ENS-VDEILEMKKEIERGRLQLEQAKNRLINANLRLVVSIAKKYTNRGLQLFDLI 447
Query: 173 QEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAE 232
QEG+IGL++ ++F +GYK STY WWI+QAI R+I++++RTIR+P M + K+
Sbjct: 448 QEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQINKVVR 507
Query: 233 ANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPG 292
+ L ++ R PTD EIA L+ ++ V+ R PISL+ + + ++ D I
Sbjct: 508 ESRQLMQKYGREPTDEEIAAQLSWPLARVKQVKNVAREPISLETPIGEEEDSSLGDFIED 567
Query: 293 PDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRE 352
+ P L++++L+ +L TL +RE ++L++ FGLD ++ +E+G +++RE
Sbjct: 568 KEIENPANQTAYTLLQEQLRSVLSTLPQREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRE 627
Query: 353 RIRQIRGIALTKLQQTNILNNLKVYM 378
RIRQI AL +L+ N L+ Y+
Sbjct: 628 RIRQIEAKALRRLRHPRRSNGLRDYI 653
>gi|254821650|ref|ZP_05226651.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379748146|ref|YP_005338967.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379755437|ref|YP_005344109.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|379762983|ref|YP_005349380.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|406031675|ref|YP_006730566.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
gi|378800510|gb|AFC44646.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|378805653|gb|AFC49788.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|378810925|gb|AFC55059.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|405130222|gb|AFS15477.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
Length = 488
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 244 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 303
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 304 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 363
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 364 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 423
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 424 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 482
Query: 374 LKVYM 378
L+ Y+
Sbjct: 483 LRDYL 487
>gi|428214294|ref|YP_007087438.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
gi|428002675|gb|AFY83518.1| RNA polymerase, sigma subunit, RpsC/SigC [Oscillatoria acuminata
PCC 6304]
Length = 418
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 141/237 (59%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I + LVVS+A YQ +GL L DL+QEG++GL R +F+P +GY+ STY YWW
Sbjct: 179 AKEHMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVDKFDPTKGYRFSTYAYWW 238
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A LS+ R + ++A+ L + + V
Sbjct: 239 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKLSQEKGRTASIEDVAKELEMTPAQV 298
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + D++ D+ PE + ++ + +EL LL L+ R
Sbjct: 299 REVLLRVPRSVSLETKVGKEKDTELGDLLET-DDISPEEKLMQEALHRELHHLLADLTSR 357
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 358 ERDVIGMRFGLTDGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNRVRDYL 414
>gi|422843866|ref|ZP_16890576.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325686026|gb|EGD28084.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 372
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 147/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G++ DLIQEG++GL++ +F+ GYK
Sbjct: 127 RIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGYK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EI
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIGAE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ V VR ++ + P+SL+ + + + D I D PE+ +++K++L E
Sbjct: 247 MDLPVKKVREILKLCQEPVSLETPIGEEDDSNLGDFIEDKDAMSPEQHAANEMLKEQLAE 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TLS+RE ++LRL FGLD + +E+G+ ++RERIRQI AL KL+ + +
Sbjct: 307 VLDTLSDREEEVLRLRFGLDDGKARTLEEVGQHFEVTRERIRQIEAKALRKLRHPSRSSQ 366
Query: 374 LKVYM 378
L+ ++
Sbjct: 367 LRDFL 371
>gi|441508334|ref|ZP_20990258.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
gi|441447362|dbj|GAC48219.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
Length = 485
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 259 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 318
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 319 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 378
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 379 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 438
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 439 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 484
>gi|433647336|ref|YP_007292338.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
gi|433297113|gb|AGB22933.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
Length = 518
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 292 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 351
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 352 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 411
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 412 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 471
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 472 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 517
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 150/247 (60%), Gaps = 7/247 (2%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K + + + +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 84 KTVLEGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGALGLERGVEKFDPTRGYK 143
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA + RTIRLP + + KI + L+++L R P SEIA+
Sbjct: 144 FSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPIPSEIAKE 203
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIP--GPDETMPERMVQKQLMKQEL 311
L++ + +R + R P+SLD V D +Q+++ GP PE ++ ++Q+L
Sbjct: 204 LDLEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLEDDGPS---PEYYTTQEFLRQDL 260
Query: 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
LL L+ ++ +L L FGL +S ++G LSLSRER+RQ+ AL L++
Sbjct: 261 NNLLAELTPQQRQVLALRFGLSDGNEMSLAKVGERLSLSRERVRQLEHQALAHLRRRRA- 319
Query: 372 NNLKVYM 378
N+K Y+
Sbjct: 320 -NVKEYV 325
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 142/226 (62%), Gaps = 1/226 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ +++ + LVVS+A Y + L L DLIQEG+IG+ RG ++F+P +GY+ STY YWW
Sbjct: 83 AKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA KSRTIRLP + + KI +A LS+ R + +E+AE L + V
Sbjct: 143 IRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQEKGRAASIAELAEHLELTPKQV 202
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R +ER+RHP+SLD V D + D++ D +PE ++ +L L+ L+ +
Sbjct: 203 REYLERSRHPLSLDLRVGDNQDTELGDLLED-DGPLPEDFATYASLQLDLDSLMAELTPQ 261
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ ++L L FGL+ P++ IG +LS+SRER+RQI AL KL++
Sbjct: 262 QREVLILRFGLNDGQPLTLASIGSMLSISRERVRQIEREALNKLRK 307
>gi|259507416|ref|ZP_05750316.1| RNA polymerase principal sigma factor SigA, partial
[Corynebacterium efficiens YS-314]
gi|259164981|gb|EEW49535.1| RNA polymerase principal sigma factor SigA [Corynebacterium
efficiens YS-314]
Length = 381
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 142 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 201
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+++ ++I
Sbjct: 202 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEE 261
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TLS
Sbjct: 262 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLS 321
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 322 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 380
>gi|317122932|ref|YP_004102935.1| RNA polymerase sigma-70 subunit RpoD [Thermaerobacter marianensis
DSM 12885]
gi|315592912|gb|ADU52208.1| RNA polymerase, sigma 70 subunit, RpoD [Thermaerobacter marianensis
DSM 12885]
Length = 433
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ ++I++ LVVSIA Y G+G+ DLIQEG++GL++ A++F+ +G+K
Sbjct: 188 RIEQGDEEAKRKLIQANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAAEKFDYRKGFK 247
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIA+
Sbjct: 248 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLVQELGREPTPEEIAKE 307
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ I VR ++ + P+SL+ + + + D I D P + L++++L++
Sbjct: 308 MGIEPEKVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDALAPAEAASQLLLREQLED 367
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE +LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 368 VLHTLTDREQKVLRLRFGLDDGRQRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKK 427
Query: 374 LKVYM 378
LK ++
Sbjct: 428 LKDFL 432
>gi|163781693|ref|ZP_02176693.1| RNA polymerase sigma factor RpoD [Hydrogenivirga sp. 128-5-R1-1]
gi|159882913|gb|EDP76417.1| RNA polymerase sigma factor RpoD [Hydrogenivirga sp. 128-5-R1-1]
Length = 571
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 145/232 (62%)
Query: 146 IIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQA 205
+I+S LVVSIA Y +GL DLIQEG+IGL++ +++ +GYK STY WWI+QA
Sbjct: 338 MIQSNLRLVVSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWWIRQA 397
Query: 206 IIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAI 265
I RAIA+++RTIR+P M + +I +A+ L + L R PT EIA+ L + VR +
Sbjct: 398 ITRAIADQARTIRIPVHMIETINRIIKASKRLFQELGREPTPEEIAKHLGMTPDKVRKVL 457
Query: 266 ERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADI 325
+ PISL+ + D ++D I PE V ++L++++L+ +L+TLS++E +I
Sbjct: 458 RSAQEPISLETPIGDDEDTFLKDFIEDKSVPNPEEYVSRKLLREQLERVLETLSDKEREI 517
Query: 326 LRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
LR +GL T + +++G++ +++RERIRQI A+ KL+ + LK +
Sbjct: 518 LRYRYGLVDGTEYTLEQVGKMFNVTRERIRQIESKAIRKLRHPSRAKYLKDF 569
>gi|441521299|ref|ZP_21002960.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
gi|441459131|dbj|GAC60921.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
Length = 465
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 239 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 298
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 299 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 358
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+++L TLSEREA ++RL FGL
Sbjct: 359 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLDTLSEREAGVVRLRFGL 418
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 419 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 464
>gi|404214757|ref|YP_006668952.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
gi|403645556|gb|AFR48796.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
Length = 474
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 248 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 307
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 308 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 367
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 368 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 427
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 428 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 473
>gi|386714844|ref|YP_006181167.1| RNA polymerase sigma factor SigA [Halobacillus halophilus DSM 2266]
gi|384074400|emb|CCG45893.1| RNA polymerase sigma factor SigA [Halobacillus halophilus DSM 2266]
Length = 382
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 140/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY WWI+QAI RAIA+
Sbjct: 156 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYATWWIRQAITRAIAD 215
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R PT EIA+ + + VR ++ + P+
Sbjct: 216 QARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAQDMELTPDKVREILKIAQEPV 275
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I + T P +L+K++L+++L TL++RE ++LRL FGL
Sbjct: 276 SLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 335
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 336 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 381
>gi|339010526|ref|ZP_08643096.1| RNA polymerase sigma factor RpoD [Brevibacillus laterosporus LMG
15441]
gi|338772681|gb|EGP32214.1| RNA polymerase sigma factor RpoD [Brevibacillus laterosporus LMG
15441]
Length = 374
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ ++GYK
Sbjct: 129 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYQKGYK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIAE
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPAPEEIAEK 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + P +L+K++L++
Sbjct: 249 MDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLED 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 309 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 368
Query: 374 LKVYM 378
LK ++
Sbjct: 369 LKDFL 373
>gi|434400128|ref|YP_007134132.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
gi|428271225|gb|AFZ37166.1| RNA polymerase, sigma subunit, RpsC/SigC [Stanieria cyanosphaera
PCC 7437]
Length = 416
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 145/237 (61%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YWW
Sbjct: 177 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 236
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A +S+ P ++A+ L++ +
Sbjct: 237 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGHTPRIEDLAQELDMTAGQI 296
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + D++ + PE + ++ ++++L+ LL L+ R
Sbjct: 297 REVLLRVPRSVSLEIKVGKEKDTELGDLLE-TESASPEETLMRESLQKDLQYLLSELTSR 355
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +++++ FG G+ P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 356 EREVIQMRFGFGGEKPFSLAEIGRCLELSRERVRQIEAKALQKLRQPRRRNMIRDYL 412
>gi|288555754|ref|YP_003427689.1| RNA polymerase sigma factor RpoD [Bacillus pseudofirmus OF4]
gi|288546914|gb|ADC50797.1| RNA polymerase sigma factor SigD [Bacillus pseudofirmus OF4]
Length = 372
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 148/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ E+GYK
Sbjct: 127 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYEKGYK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + R PT E+AE
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDFGREPTPEEVAEE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + VR ++ + P+SL+ + + + D I + P +L+K++L++
Sbjct: 247 MELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLED 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 366
Query: 374 LKVYM 378
LK ++
Sbjct: 367 LKDFL 371
>gi|196034883|ref|ZP_03102290.1| RNA polymerase sigma-43 factor [Bacillus cereus W]
gi|195992422|gb|EDX56383.1| RNA polymerase sigma-43 factor [Bacillus cereus W]
Length = 373
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 133 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYA 192
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 193 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAP 252
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + G + D I + T P +L+K++L+++L TL
Sbjct: 253 EKVREILKIAQEPVSLETPIGEEGDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTL 312
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 313 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
>gi|9837536|gb|AAG00589.1|AF288784_1 SigC [Synechococcus elongatus PCC 7942]
Length = 398
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 153/252 (60%), Gaps = 4/252 (1%)
Query: 129 NLVKYKILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFN 187
+L + K +CKE + +++ +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+
Sbjct: 145 DLEELKQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFD 204
Query: 188 PERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTD 247
P +GY+ STY YWWI+Q I RAIA +SRTIRLP + + +I +A +++ R
Sbjct: 205 PTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLTRIKKAQRKIAQTKGRTANL 264
Query: 248 SEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLM 307
EIA+ L + VR + R ISL+ V + D++ D T ER+ Q+ L
Sbjct: 265 EEIAQELEMTPDQVREVLLRVPKSISLETRVGKEKDTELGDLLETTDFTPEERLTQESL- 323
Query: 308 KQELKELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
+L+ LL L+ RE D++R+ FGL DGQ S EIG++L LSRER+RQI AL KL+
Sbjct: 324 SNDLQRLLLELNHRERDVIRMRFGLRDGQI-YSLAEIGQVLDLSRERVRQIEAKALQKLR 382
Query: 367 QTNILNNLKVYM 378
N ++ Y+
Sbjct: 383 HPRRRNQIRDYL 394
>gi|269126637|ref|YP_003300007.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermomonospora
curvata DSM 43183]
gi|268311595|gb|ACY97969.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermomonospora
curvata DSM 43183]
Length = 444
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 145/245 (59%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+ RE++ ++ + LVVS+A Y +GLSL D++QEG++GL+R ++F+ +G+K
Sbjct: 200 VAADGREAKSHMLEANLRLVVSVAKKYSDRGLSLLDVVQEGNLGLIRAVEKFDYTKGFKF 259
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI R A+ +RTIRLP + M++K++ + +RL R PT E+A L
Sbjct: 260 STYAMWWIRQAIQRGFADSARTIRLPVHVLEMLSKLSRVERDMHQRLGREPTPEELAAEL 319
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+ + VR + +R PISLD + + G + D+I D MV +QLM +L+
Sbjct: 320 DKSPAQVRELLRTSRQPISLDSTIGEDGETRIGDLIEDIDSPEASEMVDRQLMADQLRRS 379
Query: 315 LQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L LS RE I+ + FGL TP + EIG+ L L+RERIRQ+ +L+KL+ + L
Sbjct: 380 LSILSPREEMIMSMRFGLYDGTPRTLDEIGKHLGLTRERIRQLEKESLSKLRHPSNATPL 439
Query: 375 KVYMV 379
+ V
Sbjct: 440 LDFAV 444
>gi|227833276|ref|YP_002834983.1| RNA polymerase sigma factor [Corynebacterium aurimucosum ATCC
700975]
gi|262184260|ref|ZP_06043681.1| RNA polymerase sigma factor [Corynebacterium aurimucosum ATCC
700975]
gi|227454292|gb|ACP33045.1| RNA polymerase sigma factor A [Corynebacterium aurimucosum ATCC
700975]
Length = 485
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 246 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 305
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 306 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPLELAKEMDITEE 365
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 366 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLS 425
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 426 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 484
>gi|441518669|ref|ZP_21000384.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454483|dbj|GAC58345.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 489
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 263 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 322
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 323 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 382
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+++L TLSEREA ++RL FGL
Sbjct: 383 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLDTLSEREAGVVRLRFGL 442
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 443 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 488
>gi|397670626|ref|YP_006512161.1| RNA polymerase sigma factor RpoD [Propionibacterium propionicum
F0230a]
gi|395142261|gb|AFN46368.1| RNA polymerase sigma factor RpoD [Propionibacterium propionicum
F0230a]
Length = 520
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 158/266 (59%), Gaps = 3/266 (1%)
Query: 115 ESDFLDKENGELDYNLVKYKILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQ 173
E D EN L +L ++ + + R ++ ++ + LVVS+A Y G+G+ DLIQ
Sbjct: 255 EERIADAENPVLPEDLEDFEWIANDGRNAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 314
Query: 174 EGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEA 233
EG++GL+R ++F+ +GYK STY WWIKQAI RA+A+++RTIR+P M ++ K+A
Sbjct: 315 EGNLGLIRAVEKFDYTKGYKFSTYATWWIKQAITRAMADQARTIRIPVHMVEVINKLARV 374
Query: 234 NNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGP 293
+ + L R PT E+A+ L++ V + R PISL + + G D+I
Sbjct: 375 QRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDS 434
Query: 294 DETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRE 352
+ +P V L++++L ++L TLSEREA ++ + FGL DGQ P + EIG++ ++RE
Sbjct: 435 EAVVPADAVNFTLLQEQLNDVLDTLSEREAGVVSMRFGLTDGQ-PKTLDEIGKVYGVTRE 493
Query: 353 RIRQIRGIALTKLQQTNILNNLKVYM 378
RIRQI ++KL+ + L+ Y+
Sbjct: 494 RIRQIESKTMSKLRHPSRSQVLRDYL 519
>gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
gi|289544633|gb|EFD48281.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
Length = 528
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 463
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 464 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 522
Query: 374 LKVYM 378
L+ Y+
Sbjct: 523 LRDYL 527
>gi|335357397|ref|ZP_08549267.1| RNA polymerase sigma factor RpoD [Lactobacillus animalis KCTC 3501]
Length = 323
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 146/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 83 DEEAKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYA 142
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + + L R P EI +N+
Sbjct: 143 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQMLQDLGREPIPEEIGAEMNMPT 202
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T P +L+K++++ +L TL
Sbjct: 203 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQIESVLDTL 262
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 263 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 322
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 151/235 (64%), Gaps = 3/235 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I+ + R +++++I + LVVSIA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 151 EIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 210
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA SRTIRLP + + KI L ++ R T +EIA+
Sbjct: 211 FSTYAYWWIRQAITRAIAQNSRTIRLPIHITEKLNKIKRVQRELFQQYGRNATPTEIAKA 270
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELK 312
L++ S +R + +RHP+SLD V D +QD++ DE+ + V ++L++Q+LK
Sbjct: 271 LDLEPSQIRDYLLASRHPVSLDLRVGDNQDTELQDLL--EDESASADSYVTQELLRQDLK 328
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+L+ L+ ++ ++L L +GL+ +S ++G +++SRER+RQ+ AL L++
Sbjct: 329 DLMADLTPQQREVLTLRYGLNDGKEMSLSKVGVHMNISRERVRQLENQALNHLRR 383
>gi|291541030|emb|CBL14141.1| RNA polymerase, sigma 70 subunit, RpoD [Roseburia intestinalis
XB6B4]
Length = 397
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 149/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 157 DQEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 216
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA +N+ V
Sbjct: 217 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMNMPV 276
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P L+K++L+E+L TL
Sbjct: 277 ERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLEEVLGTL 336
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +L L FGL+ + +E+GR +++RERIRQI AL KL+ + LK Y+
Sbjct: 337 TEREQKVLTLRFGLEDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 396
>gi|402831650|ref|ZP_10880327.1| sigma-70, region 3 [Capnocytophaga sp. CM59]
gi|402281037|gb|EJU29729.1| sigma-70, region 3 [Capnocytophaga sp. CM59]
Length = 287
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 151/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
ER+ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 ERLTKANLRFVVSVAKQYQNQGLTLPDLINEGNMGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R+P+ EIA+ L++ V+ V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTYAYLEQTHERVPSAEEIAKELDMSVNDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + IS+D + + + D++ + P++ + + +K E++ L+TL+ REA
Sbjct: 172 SMKNSGRHISMDAPLVEGEDSNLYDVLRSGESPNPDKELMHESLKTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL P++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGENYPMTLEEIGETFELTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|421873893|ref|ZP_16305502.1| RNA polymerase sigma factor rpoD [Brevibacillus laterosporus GI-9]
gi|372457004|emb|CCF15051.1| RNA polymerase sigma factor rpoD [Brevibacillus laterosporus GI-9]
Length = 374
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ ++GYK
Sbjct: 129 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYQKGYK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIAE
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPAPEEIAEK 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + P +L+K++L++
Sbjct: 249 MDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPSDAAAYELLKEQLED 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 309 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 368
Query: 374 LKVYM 378
LK ++
Sbjct: 369 LKDFL 373
>gi|336283393|gb|AEI29170.1| sigma70 transcriptional factor [Rhodococcus ruber]
Length = 447
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 221 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 280
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 281 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 340
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 341 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 400
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 401 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHLSRSQVLRDYL 446
>gi|433545473|ref|ZP_20501826.1| RNA polymerase sigma factor [Brevibacillus agri BAB-2500]
gi|432183128|gb|ELK40676.1| RNA polymerase sigma factor [Brevibacillus agri BAB-2500]
Length = 374
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 129 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIAE
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPMPEEIAEK 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D P +L+K++L++
Sbjct: 249 MDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLED 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 309 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 368
Query: 374 LKVYM 378
LK ++
Sbjct: 369 LKDFL 373
>gi|365870934|ref|ZP_09410475.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|414583598|ref|ZP_11440738.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|420880896|ref|ZP_15344263.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420885019|ref|ZP_15348379.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420890160|ref|ZP_15353508.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420895746|ref|ZP_15359085.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899547|ref|ZP_15362879.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420906223|ref|ZP_15369541.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420972712|ref|ZP_15435905.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|421050011|ref|ZP_15513005.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|363994737|gb|EHM15955.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|392080782|gb|EIU06608.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392085805|gb|EIU11630.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087908|gb|EIU13730.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392095058|gb|EIU20853.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392100894|gb|EIU26685.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392104127|gb|EIU29913.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392118750|gb|EIU44518.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392165604|gb|EIU91290.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392238614|gb|EIV64107.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
Length = 467
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 223 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 282
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 283 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 342
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 343 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 402
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 403 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 461
Query: 374 LKVYM 378
L+ Y+
Sbjct: 462 LRDYL 466
>gi|169630092|ref|YP_001703741.1| RNA polymerase sigma factor [Mycobacterium abscessus ATCC 19977]
gi|418247851|ref|ZP_12874237.1| RNA polymerase sigma factor [Mycobacterium abscessus 47J26]
gi|418421111|ref|ZP_12994287.1| RNA polymerase sigma factor [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709752|ref|ZP_14237220.1| RNA polymerase sigma factor [Mycobacterium abscessus M93]
gi|419716769|ref|ZP_14244164.1| RNA polymerase sigma factor [Mycobacterium abscessus M94]
gi|420864405|ref|ZP_15327795.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869196|ref|ZP_15332578.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873640|ref|ZP_15337017.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420910618|ref|ZP_15373930.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917070|ref|ZP_15380374.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922235|ref|ZP_15385532.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927897|ref|ZP_15391179.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932113|ref|ZP_15395388.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420937966|ref|ZP_15401235.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942371|ref|ZP_15405628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420947419|ref|ZP_15410669.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952630|ref|ZP_15415874.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956799|ref|ZP_15420036.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961817|ref|ZP_15425042.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967506|ref|ZP_15430710.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420978237|ref|ZP_15441415.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983622|ref|ZP_15446789.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420988844|ref|ZP_15452000.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|420992758|ref|ZP_15455905.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998610|ref|ZP_15461747.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003047|ref|ZP_15466171.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421008103|ref|ZP_15471214.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013590|ref|ZP_15476671.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018540|ref|ZP_15481598.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024704|ref|ZP_15487748.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029833|ref|ZP_15492865.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035203|ref|ZP_15498223.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421039567|ref|ZP_15502576.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421043995|ref|ZP_15506996.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|169242059|emb|CAM63087.1| Probable RNA polymerase sigma factor RpoD (Sigma-A) [Mycobacterium
abscessus]
gi|353452344|gb|EHC00738.1| RNA polymerase sigma factor [Mycobacterium abscessus 47J26]
gi|363997578|gb|EHM18789.1| RNA polymerase sigma factor [Mycobacterium abscessus subsp.
bolletii BD]
gi|382940330|gb|EIC64654.1| RNA polymerase sigma factor [Mycobacterium abscessus M94]
gi|382943633|gb|EIC67947.1| RNA polymerase sigma factor [Mycobacterium abscessus M93]
gi|392068666|gb|EIT94513.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071380|gb|EIT97226.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072668|gb|EIT98509.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392112612|gb|EIU38381.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392121210|gb|EIU46976.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132071|gb|EIU57817.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135130|gb|EIU60871.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136872|gb|EIU62609.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143481|gb|EIU69206.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149798|gb|EIU75512.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392154449|gb|EIU80155.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157942|gb|EIU83639.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392166511|gb|EIU92196.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168618|gb|EIU94296.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392183123|gb|EIV08774.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392185542|gb|EIV11191.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186422|gb|EIV12069.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194505|gb|EIV20125.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199556|gb|EIV25166.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201938|gb|EIV27536.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208415|gb|EIV33989.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211501|gb|EIV37067.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224585|gb|EIV50105.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392224659|gb|EIV50178.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392225935|gb|EIV51450.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392237847|gb|EIV63341.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|392249282|gb|EIV74757.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250013|gb|EIV75487.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253698|gb|EIV79166.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
Length = 467
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 223 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 282
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 283 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 342
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 343 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 402
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 403 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 461
Query: 374 LKVYM 378
L+ Y+
Sbjct: 462 LRDYL 466
>gi|443673287|ref|ZP_21138355.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414102|emb|CCQ16693.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 476
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 250 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 309
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 310 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 369
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 370 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 429
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 430 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 475
>gi|407647092|ref|YP_006810851.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
gi|407309976|gb|AFU03877.1| RNA polymerase sigma factor SigB [Nocardia brasiliensis ATCC
700358]
Length = 322
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 137/225 (60%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 96 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMAD 155
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A L ++L R TD+E+A I V + ++ +R P+
Sbjct: 156 QSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDAELANESGIPVDKISDLLDHSRDPV 215
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + + D I + T E V L+ +++ +L TL ERE ++RL FGL
Sbjct: 216 SLDMPVGNDEEAPLGDFIEDSEATSAESAVIAGLLHHDVRSVLATLDEREQQVIRLRFGL 275
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI ++KL++ + L+ Y
Sbjct: 276 DDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRKGERADRLRAY 320
>gi|402815815|ref|ZP_10865407.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
gi|402506855|gb|EJW17378.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
Length = 376
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 131 RIEQGDEEAKKRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHSKGYK 190
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA
Sbjct: 191 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPTPEEIAAE 250
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + V VR ++ + P+SL+ + + + D I + P +L+K++L++
Sbjct: 251 MELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLED 310
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL+ERE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 311 VLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 370
Query: 374 LKVYM 378
LK ++
Sbjct: 371 LKDFL 375
>gi|387790507|ref|YP_006255572.1| sigma-70 family RNA polymerase sigma factor [Solitalea canadensis
DSM 3403]
gi|379653340|gb|AFD06396.1| RNA polymerase sigma factor, sigma-70 family [Solitalea canadensis
DSM 3403]
Length = 287
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/274 (35%), Positives = 163/274 (59%), Gaps = 9/274 (3%)
Query: 114 KESDFLDK---ENGELDYNLVKYKILC--KERESQ----ERIIRSYRSLVVSIATGYQGK 164
+ES LDK E G++D + +++ K RE ER+ ++ VVS+A YQ +
Sbjct: 13 RESQSLDKYLHEIGKVDLITAEEEVILAQKIREGDQAALERLTKTNLRFVVSVAKQYQNQ 72
Query: 165 GLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMA 224
GL+L DLI EG++GL++ AKRF+ +G+K +Y WWI+Q+I++AIA +SR +RLP +
Sbjct: 73 GLTLGDLINEGNLGLIKAAKRFDETKGFKFISYAVWWIRQSILQAIAEQSRIVRLPLNQV 132
Query: 225 GMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCM 284
G ++KI++A + L + R P+ E+A++L V + + + +S+D
Sbjct: 133 GSLSKISKAYSKLEQEYEREPSPEELADILETTVDKISDTLSNSGRHVSMDAPFVQGEEN 192
Query: 285 TMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIG 344
T+ D++ D + M+ + + +E+K L TL+ERE +I+ L FGL P+S +EIG
Sbjct: 193 TLLDVLENTDTAATDSMLISESLSEEIKRALSTLTEREREIIVLFFGLGSNHPLSLEEIG 252
Query: 345 RLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+L+RER+RQI+ AL +L+ T+ LK Y+
Sbjct: 253 EKFNLTRERVRQIKDKALQRLRHTSRSKILKSYL 286
>gi|317050370|ref|YP_004111486.1| RNA polymerase sigma factor RpoD [Desulfurispirillum indicum S5]
gi|316945454|gb|ADU64930.1| RNA polymerase sigma factor RpoD [Desulfurispirillum indicum S5]
Length = 627
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 138/223 (61%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
++I + LVVSIA Y +GL DLIQEG+IGL++ +F RGYK STY WWI+Q
Sbjct: 392 QLIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 451
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLA 264
AI RAIA+++RTIR+P M + K+ + L + L R PT EIA+ +++ V VR
Sbjct: 452 AITRAIADQARTIRIPVHMIETINKLVRTSRNLVQELGREPTPEEIADKMDLPVEKVRKV 511
Query: 265 IERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREAD 324
++ + PISL+ + + ++ D I + P V +K++++ +L TLS REA+
Sbjct: 512 LKIAKEPISLETPIGEEEDSSLGDFIEDKNTVSPAEAVISFNLKEQVRSVLHTLSAREAE 571
Query: 325 ILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+L+L FG+D + + +E+G+ +++RERIRQI AL KL+
Sbjct: 572 VLKLRFGIDTDSDHTLEEVGKKFNVTRERIRQIEAKALRKLRH 614
>gi|240147091|ref|ZP_04745692.1| RNA polymerase sigma factor RpoD [Roseburia intestinalis L1-82]
gi|257200737|gb|EEU99021.1| RNA polymerase sigma factor RpoD [Roseburia intestinalis L1-82]
gi|291536629|emb|CBL09741.1| RNA polymerase, sigma 70 subunit, RpoD [Roseburia intestinalis
M50/1]
Length = 397
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 149/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 157 DQEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 216
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA +N+ V
Sbjct: 217 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMNMPV 276
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P L+K++L+E+L TL
Sbjct: 277 ERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLEEVLGTL 336
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +L L FGL+ + +E+GR +++RERIRQI AL KL+ + LK Y+
Sbjct: 337 TEREQKVLTLRFGLEDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 396
>gi|296139587|ref|YP_003646830.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027721|gb|ADG78491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 483
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 257 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 316
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 317 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 376
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 377 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGL 436
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 437 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 482
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 149/240 (62%), Gaps = 3/240 (1%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 84 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 143
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R P+ +E+A + +
Sbjct: 144 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEE 203
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + +++ G D +P V+ + +K +L++LL L
Sbjct: 204 EVKDLMCRARQPVSLEMKVGDGDDTELLELLAG-DGELPSEQVEGECLKGDLRDLLSQLP 262
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYMV 379
E + +LR+ +G+DG+ P+S I + + +SR+R R++ L L++ + L+ Y++
Sbjct: 263 ELQGKVLRMRYGMDGEEPMSLTGIAKSMKMSRDRTRRLEREGLEMLRRGD--EQLQAYVL 320
>gi|359427064|ref|ZP_09218139.1| RNA polymerase sigma factor SigA [Gordonia amarae NBRC 15530]
gi|358237677|dbj|GAB07721.1| RNA polymerase sigma factor SigA [Gordonia amarae NBRC 15530]
Length = 491
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 265 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 324
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 325 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 384
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 385 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 444
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 445 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 490
>gi|134098380|ref|YP_001104041.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|291006918|ref|ZP_06564891.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|133911003|emb|CAM01116.1| RNA polymerase major sigma factor [Saccharopolyspora erythraea NRRL
2338]
Length = 467
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 241 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 300
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 301 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 360
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 361 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGL 420
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 421 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 466
>gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians D188]
Length = 474
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 248 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 307
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 308 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 367
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 368 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 427
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 428 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 473
>gi|260063687|ref|YP_003196767.1| sigma factor A [Robiginitalea biformata HTCC2501]
gi|88783132|gb|EAR14305.1| putative sigma factor A [Robiginitalea biformata HTCC2501]
Length = 287
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 156/245 (63%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I ++ + E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 RIKAGDQAALEKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + L + R+P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQAHERVPSAEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ V V+ +++ + +S+D + D + D++ + P++ + + ++ E++
Sbjct: 162 LDMTVEDVKQSLKNSGRHVSMDAPLIDGEDSNLYDVLRSGESPNPDKELLHESLRTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL GQ ++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ALETLTPREADVIRLYFGLAGQHSMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 150/240 (62%), Gaps = 1/240 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R A++F+P++GYK STY Y
Sbjct: 151 RSAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAY 210
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I R IAN +RTIRLP + + K+ + L ++L R PT++E+A L++
Sbjct: 211 WWIRQGITRTIANDARTIRLPIHIVEKLNKLKKTQRELRKQLNRTPTEAELAAELDLTPE 270
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL-QTL 318
+R + R +SL+ V + +++ PE + + +M+QE+ ++L + L
Sbjct: 271 QLRSLQQVRRKSLSLNHRVGKGEDTELMELLEDGSTLSPESRMNESMMRQEISDVLTEVL 330
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE DI+ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ + + LK ++
Sbjct: 331 TEREKDIISLRYGLTTGEPHTLEEVGGIFNLSRERVRQIQTKAMRKLRRPQVASRLKNWL 390
>gi|384515845|ref|YP_005710937.1| RNA polymerase sigma factor B [Corynebacterium ulcerans 809]
gi|397654192|ref|YP_006494875.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
gi|334697046|gb|AEG81843.1| RNA polymerase sigma factor B [Corynebacterium ulcerans 809]
gi|393403148|dbj|BAM27640.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
Length = 329
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 147/247 (59%), Gaps = 1/247 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
K+L K+ R+++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+
Sbjct: 83 KVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGF 142
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + + L R T+ E+AE
Sbjct: 143 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAE 202
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I S + L + ++R P+SLD V + D I + T E V L +++
Sbjct: 203 ESGIDESKIELLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHSDIR 262
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TL +RE D++R+ +GLD P + +IGR LSRER+RQI +TKL+ +
Sbjct: 263 SVLDTLEQREQDVIRMRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMTKLRDGARAD 322
Query: 373 NLKVYMV 379
L+ Y +
Sbjct: 323 KLRAYAI 329
>gi|225021265|ref|ZP_03710457.1| hypothetical protein CORMATOL_01277 [Corynebacterium matruchotii
ATCC 33806]
gi|224945998|gb|EEG27207.1| hypothetical protein CORMATOL_01277 [Corynebacterium matruchotii
ATCC 33806]
Length = 617
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 378 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 437
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+++ ++I
Sbjct: 438 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPYELSKEMDITED 497
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 498 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 557
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 558 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 616
>gi|406895179|gb|EKD39817.1| hypothetical protein ACD_75C00286G0005 [uncultured bacterium]
Length = 442
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 147/237 (62%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++ +IR+ LVVSIA Y +GL+L DLIQEG++GL+R RF+ +G K STY WW
Sbjct: 206 AKDTMIRANLRLVVSIAKRYMHQGLTLADLIQEGNLGLMRAVFRFDYTKGNKFSTYASWW 265
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAI +K+RTIRLP + ++ +A L + L R PT EI++ N+ + +
Sbjct: 266 IRQAITRAILDKTRTIRLPVHFLELRSQFFKAFYALFKELGREPTPLEISKATNLPMDKI 325
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+E +R PISL+ V D T+ D + + P VQ + + + ++L+TLSER
Sbjct: 326 LSILEASREPISLETPVGDDDS-TLGDFLENQESQSPYDAVQTRELSGRVNDILETLSER 384
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E I+RL FG+ + + +EIG+L ++SRERIRQI AL +L+ ++ + LK ++
Sbjct: 385 EEKIIRLRFGIGEKAEYTLEEIGKLFNVSRERIRQIEKKALNRLRHSSRRDKLKFFI 441
>gi|423076581|ref|ZP_17065289.1| RNA polymerase sigma factor RpoD [Desulfitobacterium hafniense DP7]
gi|361852386|gb|EHL04646.1| RNA polymerase sigma factor RpoD [Desulfitobacterium hafniense DP7]
Length = 392
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 139/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI RAIA+
Sbjct: 166 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYVKGFKFSTYATWWIRQAITRAIAD 225
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ + L + L R PT EIA ++I V VR ++ + P+
Sbjct: 226 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQMDISVERVREIMKIAQEPV 285
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D IP D P L+K++L+E+L+TL+ RE +LRL FGL
Sbjct: 286 SLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGL 345
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +E+G+ ++RERIRQI AL KL+ + LK Y+
Sbjct: 346 DDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 391
>gi|410659170|ref|YP_006911541.1| RNA polymerase sigma factor RpoD [Dehalobacter sp. DCA]
gi|410662155|ref|YP_006914526.1| RNA polymerase sigma factor RpoD [Dehalobacter sp. CF]
gi|409021525|gb|AFV03556.1| RNA polymerase sigma factor RpoD [Dehalobacter sp. DCA]
gi|409024511|gb|AFV06541.1| RNA polymerase sigma factor RpoD [Dehalobacter sp. CF]
Length = 386
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 143/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 149 AKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGFKFSTYATWW 208
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ N L + L R PT E A+++ I V
Sbjct: 209 IRQAITRAIADQARTIRIPVHMVETINKLIRVNRQLLQELGRDPTPDETAKVMEIPEERV 268
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D IP D P L+K++L+E+L+TL+ R
Sbjct: 269 REILKIAQEPVSLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPR 328
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK Y+
Sbjct: 329 EEKVLRLRFGLDDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 385
>gi|397614537|gb|EJK62861.1| hypothetical protein THAOC_16512 [Thalassiosira oceanica]
Length = 466
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 142/230 (61%), Gaps = 7/230 (3%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LV+SIA YQ +GL+++DL QEG++GL R ++F+PE+G++ STY WWIKQ I+RAIA+
Sbjct: 235 LVISIAKRYQNRGLNMQDLCQEGTLGLTRACEKFDPEKGFRFSTYATWWIKQGIMRAIAD 294
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTR--- 269
++RTIRLP + + + + N L+ L R PT EIA + I + ++R++
Sbjct: 295 QARTIRLPVHIHDQLNLVRKTENDLASELGRDPTKEEIAAKVGIKPDKIDF-LKRSKGIR 353
Query: 270 --HPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILR 327
+ GA T+QD + P E P M Q ++++ +L L++TL+ RE ++R
Sbjct: 354 GGYRWFQGGAAGSERSFTIQDTLGDP-EQQPVDMAQYRMLQDDLSRLIRTLNAREQAVIR 412
Query: 328 LHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
L FGLD TP + +EIGR S++RERIRQI AL KL+Q + +K Y
Sbjct: 413 LRFGLDDGTPKTLEEIGRKFSVTRERIRQIEARALHKLRQPYRNHTVKCY 462
>gi|384100762|ref|ZP_10001819.1| RNA polymerase sigma factor [Rhodococcus imtechensis RKJ300]
gi|383841668|gb|EID80945.1| RNA polymerase sigma factor [Rhodococcus imtechensis RKJ300]
Length = 457
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 231 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 290
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 291 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 350
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 351 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 410
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 411 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 456
>gi|226366217|ref|YP_002784000.1| RNA polymerase sigma factor [Rhodococcus opacus B4]
gi|226244707|dbj|BAH55055.1| RNA polymerase sigma factor SigA [Rhodococcus opacus B4]
gi|254553058|dbj|BAH85841.1| RNA polymerase sigma A factor [Rhodococcus opacus]
Length = 457
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 231 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 290
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 291 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 350
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 351 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 410
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 411 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 456
>gi|305681425|ref|ZP_07404232.1| RNA polymerase sigma factor RpoD [Corynebacterium matruchotii ATCC
14266]
gi|305659630|gb|EFM49130.1| RNA polymerase sigma factor RpoD [Corynebacterium matruchotii ATCC
14266]
Length = 608
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 369 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 428
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+++ ++I
Sbjct: 429 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPYELSKEMDITED 488
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 489 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 548
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 549 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 607
>gi|111023781|ref|YP_706753.1| RNA polymerase sigma factor [Rhodococcus jostii RHA1]
gi|397737315|ref|ZP_10503987.1| RNA polymerase principal sigma factor hrdB [Rhodococcus sp. JVH1]
gi|110823311|gb|ABG98595.1| sigma factor, sigma 70 type, probable group 1 (principle sigma
factor) [Rhodococcus jostii RHA1]
gi|396926754|gb|EJI93991.1| RNA polymerase principal sigma factor hrdB [Rhodococcus sp. JVH1]
Length = 457
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 231 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 290
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 291 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 350
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 351 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 410
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 411 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 456
>gi|452960731|gb|EME66046.1| RNA polymerase sigma factor [Rhodococcus ruber BKS 20-38]
Length = 451
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 225 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 284
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 285 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 344
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 345 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 404
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 405 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 450
>gi|333991084|ref|YP_004523698.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
gi|333487052|gb|AEF36444.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
Length = 512
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 286 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 345
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A ++I V + R PI
Sbjct: 346 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAREMDITPEKVLEIQQYAREPI 405
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 406 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 465
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 466 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 511
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 154/244 (63%), Gaps = 1/244 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ R+IRS LVVSIA Y +G+ DLIQEG+IGL R A++F+P +GYK S
Sbjct: 132 LYQGRVAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFS 191
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI R IAN +RTIRLP + + K+ +A L + L+R PT++E+A+ L
Sbjct: 192 TYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRDLKQELQRNPTEAELAQALE 251
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ S + ++ R +SL+ V + +++ + +PE + + +M QE+ ++L
Sbjct: 252 VSQSQLHQLLQLRRQSLSLNHRVGKGEDTELLELLEDHEMRLPEDQMNEAMMNQEISDVL 311
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ERE D++ + +GL+ P + +E+G + +LSRER+RQI+ A+ KL++ + L
Sbjct: 312 SDVLTEREKDVISMRYGLNASQPYTLEEVGLMFNLSRERVRQIQSKAMRKLRRPQVARRL 371
Query: 375 KVYM 378
K ++
Sbjct: 372 KGWL 375
>gi|418051032|ref|ZP_12689117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
gi|353184689|gb|EHB50213.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
Length = 509
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 152/245 (62%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 265 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 324
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 325 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 384
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 385 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 444
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 445 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 503
Query: 374 LKVYM 378
L+ Y+
Sbjct: 504 LRDYL 508
>gi|194476921|ref|YP_002049100.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
gi|171191928|gb|ACB42890.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Paulinella chromatophora]
Length = 321
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 153/243 (62%), Gaps = 2/243 (0%)
Query: 125 ELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
+L N VK KI+ +R ++E+++ S LVVSIA Y + + L DL+QEG+IGL+RG +
Sbjct: 71 DLSINQVKRKIIHGKR-AKEQMVSSNLRLVVSIAKKYTKRSMELLDLVQEGTIGLIRGVE 129
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F+P RGYK STY YWWI+Q I RAI+ +SRTIRLP + + K+ +A LS+ L R
Sbjct: 130 KFDPTRGYKFSTYAYWWIRQGITRAISEQSRTIRLPIHITEELNKLKKAQRDLSQSLGRT 189
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT E+A+M+ + V+ + + P+SL+ + D + +++P E +PE V +
Sbjct: 190 PTVIELAKMIKLTEKEVKELLCHAKQPVSLEMKIGDGDDTVLLELLPSEIE-LPEEYVNR 248
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
+ ++++L L++ L E + IL++ +G D P++ IGR+L +SR+R+R + + +
Sbjct: 249 KCLRRDLLALVEQLPEIQVRILKMRYGFDSTEPLTLTGIGRVLGMSRDRVRNLERDGINR 308
Query: 365 LQQ 367
LQ+
Sbjct: 309 LQK 311
>gi|399046975|ref|ZP_10739163.1| RNA polymerase sigma factor, sigma-70 family [Brevibacillus sp.
CF112]
gi|398055125|gb|EJL47217.1| RNA polymerase sigma factor, sigma-70 family [Brevibacillus sp.
CF112]
Length = 375
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 135 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYA 194
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIAE +++
Sbjct: 195 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPMPEEIAEKMDLTP 254
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P +L+K++L+++L TL
Sbjct: 255 EKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLEDVLDTL 314
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 315 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
>gi|453363955|dbj|GAC80270.1| RNA polymerase sigma factor SigA [Gordonia malaquae NBRC 108250]
Length = 466
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 240 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 299
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 300 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 359
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+++L TLSEREA ++RL FGL
Sbjct: 360 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLDTLSEREAGVVRLRFGL 419
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 420 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 465
>gi|226311661|ref|YP_002771555.1| RNA polymerase sigma factor [Brevibacillus brevis NBRC 100599]
gi|226094609|dbj|BAH43051.1| RNA polymerase sigma factor [Brevibacillus brevis NBRC 100599]
Length = 376
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 136 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYKFSTYA 195
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIAE +++
Sbjct: 196 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPMPEEIAEKMDLTP 255
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P +L+K++L+++L TL
Sbjct: 256 EKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLEDVLDTL 315
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 316 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 375
>gi|222151460|ref|YP_002560616.1| RNA polymerase sigma factor RpoD [Macrococcus caseolyticus
JCSC5402]
gi|222120585|dbj|BAH17920.1| RNA polymerase sigma factor SigA [Macrococcus caseolyticus
JCSC5402]
Length = 366
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 146/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 126 DEEAKARLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFTKGFKFSTYA 185
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 186 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPSPEEIGEEMDLPA 245
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P +L+K++L+++L TL
Sbjct: 246 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAQSPADHAAYELLKEQLEDVLDTL 305
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 306 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 365
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 148/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ Y LCK++ +I+S LV+SI YQG G++L+DL+QEG GL+RGA++F+ +
Sbjct: 42 LNYGTLCKDK-----MIKSNIRLVISIXKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 96
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ + ++++SRTIRLP M ++ EA L R P D EI
Sbjct: 97 GFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLHENGRHPDDKEI 156
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SL+ + + ++I P+ E M+ KQ MKQ+
Sbjct: 157 AEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETCEDMLIKQFMKQD 216
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L+++L +L+ RE ++R FG++ + +EIG ++ +SRERIRQI A KL+
Sbjct: 217 LEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKR 276
Query: 371 LNNLKVYMV 379
+L+ Y++
Sbjct: 277 TKHLQQYVM 285
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/234 (38%), Positives = 144/234 (61%), Gaps = 5/234 (2%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ + + + +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 84 QTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 143
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA + RTIRLP + + KI + L++ L R PT +EIA+
Sbjct: 144 FSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPAEIAKE 203
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIP--GPDETMPERMVQKQLMKQEL 311
L + + +R + R P+SLD V D +Q+++ GP PE ++ ++Q+L
Sbjct: 204 LELEPAQIREYLNMARQPVSLDVKVGDNQDTELQEMLEDSGPS---PEYYTNQEFLRQDL 260
Query: 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
LL L+ ++ ++L L FGL+ +S ++G L+LSRER+RQ+ AL L
Sbjct: 261 NNLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHL 314
>gi|421059039|ref|ZP_15521671.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B3]
gi|421067092|ref|ZP_15528606.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans A12]
gi|421072461|ref|ZP_15533570.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pelosinus
fermentans A11]
gi|392445661|gb|EIW22972.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pelosinus
fermentans A11]
gi|392450830|gb|EIW27839.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans A12]
gi|392459720|gb|EIW36105.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B3]
Length = 377
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 145/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 137 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYA 196
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIA+ ++I V
Sbjct: 197 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKEMDISV 256
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P L+K++L+E+L+TL
Sbjct: 257 ERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETL 316
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 317 TPREEKVLRLRFGLDDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 376
>gi|432341278|ref|ZP_19590642.1| RNA polymerase sigma factor [Rhodococcus wratislaviensis IFP 2016]
gi|430773693|gb|ELB89357.1| RNA polymerase sigma factor [Rhodococcus wratislaviensis IFP 2016]
Length = 457
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 231 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 290
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 291 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 350
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 351 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 410
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 411 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 456
>gi|331082069|ref|ZP_08331197.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
6_1_63FAA]
gi|330405664|gb|EGG85194.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
6_1_63FAA]
Length = 374
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 146/237 (61%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY WW
Sbjct: 137 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 196
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + L + L R P EIAE +N+ V V
Sbjct: 197 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAEEMNMSVERV 256
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ ++ P+SL+ + + + D I + +P L+K++L E+L TL+ER
Sbjct: 257 REILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVEVLGTLTER 316
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 317 EQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 373
>gi|54025729|ref|YP_119971.1| RNA polymerase sigma factor [Nocardia farcinica IFM 10152]
gi|54017237|dbj|BAD58607.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 454
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 228 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 287
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 288 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 347
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 348 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 407
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 408 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 453
>gi|384566576|ref|ZP_10013680.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
gi|384522430|gb|EIE99625.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
glauca K62]
Length = 439
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +G+K STY WWI+QAI RA+A+
Sbjct: 213 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMAD 272
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 273 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDISPEKVLEIQQYAREPI 332
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +LQTLSEREA ++RL FGL
Sbjct: 333 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLQTLSEREAGVVRLRFGL 392
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 393 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 438
>gi|300812183|ref|ZP_07092625.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496819|gb|EFK31899.1| RNA polymerase sigma factor RpoD [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 372
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 147/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E+++ + + LVVSIA Y G+G++ DLIQEG++GL++ +F+ GYK
Sbjct: 127 RIEAGDEEAKQELAEANLRLVVSIAKRYVGRGMNFLDLIQEGNMGLMKAVDKFDYRLGYK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EI
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDPEPEEIGAE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ V VR ++ + P+SL+ + + + D I D PE+ +++K++L E
Sbjct: 247 MDLPVKKVREILKICQEPVSLETPIGEEDDSNLGDFIEDKDAMSPEQHAANEMLKEQLAE 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TLS+RE ++LRL FGLD + +E+G+ ++RERIRQI AL KL+ + +
Sbjct: 307 VLDTLSDREEEVLRLRFGLDDGKARTLEEVGQHFEVTRERIRQIEAKALRKLRHPSRSSQ 366
Query: 374 LKVYM 378
L+ ++
Sbjct: 367 LRDFL 371
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 148/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ + LCK++ +I+S LV+SIA YQG G++L+DL+QEG GL+RGA++F+ +
Sbjct: 326 IHHGTLCKDK-----MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATK 380
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ ++++++SR IRLP M ++ EA L + P + EI
Sbjct: 381 GFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEI 440
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SLD + + ++I P+ E ++ K+ M+Q+
Sbjct: 441 AEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQD 500
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L ++L +L RE ++R FG++ + +EIG ++ +SRER+RQI A KL+
Sbjct: 501 LDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKR 560
Query: 371 LNNLKVYMV 379
N+L+ Y+V
Sbjct: 561 SNHLQQYLV 569
>gi|312139434|ref|YP_004006770.1| sigma-70 factor siga [Rhodococcus equi 103S]
gi|325672677|ref|ZP_08152373.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
gi|311888773|emb|CBH48085.1| sigma-70 factor SigA [Rhodococcus equi 103S]
gi|325556554|gb|EGD26220.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
Length = 459
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 233 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 292
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 293 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 352
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 353 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 412
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 413 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 458
>gi|421074930|ref|ZP_15535949.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans JBW45]
gi|392526990|gb|EIW50097.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans JBW45]
Length = 377
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 145/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 137 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYA 196
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIA+ ++I V
Sbjct: 197 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKEMDISV 256
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P L+K++L+E+L+TL
Sbjct: 257 ERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETL 316
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 317 TPREEKVLRLRFGLDDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 376
>gi|317495391|ref|ZP_07953760.1| RNA polymerase sigma factor RpoD [Gemella morbillorum M424]
gi|316914450|gb|EFV35927.1| RNA polymerase sigma factor RpoD [Gemella morbillorum M424]
Length = 361
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 143/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI RAIA+
Sbjct: 135 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYSKGFKFSTYATWWIRQAITRAIAD 194
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + ++ L + L R P EIA+ +N+ VR ++ + P+
Sbjct: 195 QARTIRIPVHMVETINRLIRVQRQLLQDLGREPKPEEIAKKMNMTPDKVREILKIAQEPV 254
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I D P +L+K++L+E+L+TL++RE ++L+L FGL
Sbjct: 255 SLETPIGEEDDSHLGDFIEDKDAQSPVEHAANELLKEQLEEILETLTDREENVLKLRFGL 314
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DG+T + +E+G ++RERIRQI A+ KL+ + LN LK +M
Sbjct: 315 KDGKTH-TLEEVGSAFGVTRERIRQIEAKAIRKLKHPSKLNKLKGFM 360
>gi|89895793|ref|YP_519280.1| RNA polymerase sigma factor RpoD [Desulfitobacterium hafniense Y51]
gi|89335241|dbj|BAE84836.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 367
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 139/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI RAIA+
Sbjct: 141 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYVKGFKFSTYATWWIRQAITRAIAD 200
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ + L + L R PT EIA ++I V VR ++ + P+
Sbjct: 201 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQMDISVERVREIMKIAQEPV 260
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D IP D P L+K++L+E+L+TL+ RE +LRL FGL
Sbjct: 261 SLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGL 320
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +E+G+ ++RERIRQI AL KL+ + LK Y+
Sbjct: 321 DDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 366
>gi|398817952|ref|ZP_10576551.1| RNA polymerase sigma factor, sigma-70 family [Brevibacillus sp.
BC25]
gi|398028750|gb|EJL22253.1| RNA polymerase sigma factor, sigma-70 family [Brevibacillus sp.
BC25]
Length = 376
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 131 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGYK 190
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIAE
Sbjct: 191 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPMPEEIAEK 250
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D P +L+K++L++
Sbjct: 251 MDLTPEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQDALEPSDAAAYELLKEQLED 310
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 311 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 370
Query: 374 LKVYM 378
LK ++
Sbjct: 371 LKDFL 375
>gi|379709871|ref|YP_005265076.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
gi|374847370|emb|CCF64440.1| RNA polymerase sigma factor SigB [Nocardia cyriacigeorgica GUH-2]
Length = 322
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 136/225 (60%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 96 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMAD 155
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A L ++L R TD E+A I V + ++ +R P+
Sbjct: 156 QSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELANESGIPVEKIADLLDHSRDPV 215
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + + D I + T E V L+ +++ +L TL ERE ++RL FGL
Sbjct: 216 SLDMPVGNDEEAPLGDFIEDSEATSAESAVIAGLLHHDVRSVLATLDEREQQVIRLRFGL 275
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI ++KL++ + L+ Y
Sbjct: 276 DDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRKGERADRLRAY 320
>gi|332292552|ref|YP_004431161.1| RpoD subfamily RNA polymerase sigma-70 subunit [Krokinobacter sp.
4H-3-7-5]
gi|332170638|gb|AEE19893.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Krokinobacter sp.
4H-3-7-5]
Length = 287
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 155/245 (63%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + + E++ ++ VVS++ YQ +GL+L DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 RIKAGDHRALEKLTKANLRFVVSVSKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQANERPPSPEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ ++ V+ +++ + IS+D + + + D++ + P+R + + +K E++
Sbjct: 162 LDMSINDVKESLKNSGRHISMDAPLVEGEDSNLYDVLNSGESPNPDRELLHESLKTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ALETLTPREADVVRLYFGLGDQQPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|169334166|ref|ZP_02861359.1| hypothetical protein ANASTE_00560 [Anaerofustis stercorihominis DSM
17244]
gi|169258883|gb|EDS72849.1| RNA polymerase sigma factor RpoD [Anaerofustis stercorihominis DSM
17244]
Length = 403
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 148/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + E+++++ + LVVSIA Y +G+S DLIQEG++GLL+ ++F+ +G+K
Sbjct: 159 KIESGDVEARKKLCEANLRLVVSIAKRYVNRGMSFLDLIQEGNLGLLKAVEKFDYTKGFK 218
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ +L + L R P EIA+
Sbjct: 219 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLKRVQRMLIQDLGRDPNSHEIAKE 278
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + VR ++ ++ P+SL+ + + + D IP D PE L++ +L E
Sbjct: 279 MGLPEEKVRDIMKISQDPVSLETPIGEEEDSHLGDFIPDDDAVAPEEAASYMLLRTQLFE 338
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TL++REA +L L FGL+ P + +E+G + ++RERIRQI AL KL+
Sbjct: 339 VLKTLTDREAKVLILRFGLEDGRPRTLEEVGDIFCVTRERIRQIEAKALRKLRHPTRSKK 398
Query: 374 LKVYM 378
L+ ++
Sbjct: 399 LRDFL 403
>gi|295397565|ref|ZP_06807644.1| RNA polymerase sigma factor rpoD [Aerococcus viridans ATCC 11563]
gi|294974189|gb|EFG49937.1| RNA polymerase sigma factor rpoD [Aerococcus viridans ATCC 11563]
Length = 374
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +G+K STY WWI+QAI RAIA+
Sbjct: 148 LVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYHKGFKFSTYATWWIRQAITRAIAD 207
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R PT EI +++ VR ++ + P+
Sbjct: 208 QARTIRIPVHMVETINKLVRIQRQLLQDLGREPTPEEIGAEMDLPTEKVRDILKIAQEPV 267
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I D T P+ +L+K++L E+L TL++RE ++LRL FGL
Sbjct: 268 SLETPIGEEDDSHLGDFIEDHDATSPDDYTSAELLKEQLNEVLDTLTDREENVLRLRFGL 327
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ+ + +++G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 328 EDGQSK-TLEQVGQQFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
>gi|443490424|ref|YP_007368571.1| RNA polymerase sigma factor SigA [Mycobacterium liflandii 128FXT]
gi|442582921|gb|AGC62064.1| RNA polymerase sigma factor SigA [Mycobacterium liflandii 128FXT]
Length = 509
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 265 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 324
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 325 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 384
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 385 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 444
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 445 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 503
Query: 374 LKVYM 378
L+ Y+
Sbjct: 504 LRDYL 508
>gi|219670224|ref|YP_002460659.1| RNA polymerase sigma factor RpoD [Desulfitobacterium hafniense
DCB-2]
gi|219540484|gb|ACL22223.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Desulfitobacterium hafniense DCB-2]
Length = 372
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 139/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI RAIA+
Sbjct: 146 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYVKGFKFSTYATWWIRQAITRAIAD 205
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ + L + L R PT EIA ++I V VR ++ + P+
Sbjct: 206 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAVQMDISVERVREIMKIAQEPV 265
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D IP D P L+K++L+E+L+TL+ RE +LRL FGL
Sbjct: 266 SLETPIGEEEDSHLGDFIPDEDAPAPSEAASFILLKEQLEEVLETLTPREEKVLRLRFGL 325
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +E+G+ ++RERIRQI AL KL+ + LK Y+
Sbjct: 326 DDGRTRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
>gi|302670285|ref|YP_003830245.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
gi|302394758|gb|ADL33663.1| RNA polymerase sigma factor RpoD [Butyrivibrio proteoclasticus
B316]
Length = 521
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 150/244 (61%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
I+ + E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 277 IIYEGEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDFRKGFKF 336
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P E+A+ +
Sbjct: 337 STYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPLPEEVAKEM 396
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
N+ V VR ++ ++ P+SL+ + + + D I + +P L+K++L E+
Sbjct: 397 NMPVERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVEV 456
Query: 315 LQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L TL+ERE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + L
Sbjct: 457 LGTLTEREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKL 516
Query: 375 KVYM 378
K Y+
Sbjct: 517 KDYL 520
>gi|444432019|ref|ZP_21227179.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
gi|443887193|dbj|GAC68900.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
Length = 479
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 253 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 312
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 313 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 372
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 373 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGL 432
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 433 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 478
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 148/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ + LCK++ +I+S LV+SIA YQG G++L+DL+QEG GL+RGA++F+ +
Sbjct: 326 IHHGTLCKDK-----MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATK 380
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ ++++++SR IRLP M ++ EA L + P + EI
Sbjct: 381 GFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEI 440
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SLD + + ++I P+ E ++ K+ M+Q+
Sbjct: 441 AEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQD 500
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L ++L +L RE ++R FG++ + +EIG ++ +SRER+RQI A KL+
Sbjct: 501 LDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKR 560
Query: 371 LNNLKVYMV 379
N+L+ Y+V
Sbjct: 561 NNHLQQYLV 569
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 152/247 (61%), Gaps = 7/247 (2%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ + + + +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 84 QTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 143
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA + RTIRLP + + KI + L+++L R P+ +EIA+
Sbjct: 144 FSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPSPTEIAKE 203
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDII--PGPDETMPERMVQKQLMKQEL 311
L + + +R + R P+SLD V D +Q+++ GP PE ++ ++Q+L
Sbjct: 204 LELEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLEDEGPS---PEYYTTQEFLRQDL 260
Query: 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
LL L+ ++ ++L L FGL+ +S ++G L+LSRER+RQ+ AL L++
Sbjct: 261 NNLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRRRRA- 319
Query: 372 NNLKVYM 378
N+K Y+
Sbjct: 320 -NVKEYV 325
>gi|424852234|ref|ZP_18276631.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|356666899|gb|EHI46970.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 457
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 231 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 290
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 291 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 350
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 351 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 410
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 411 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 456
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 163/275 (59%), Gaps = 15/275 (5%)
Query: 119 LDKENGELDYNLVKYKILCK------------ERESQERIIRSYRSLVVSIATGYQGKGL 166
L++ENG + + I C + ++ +I++ LVVSIA Y K +
Sbjct: 310 LEEENGGKEPTRFMWAIECNITEQELERRLEEGKRAKNAMIQANLRLVVSIAKRYANKSM 369
Query: 167 SLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGM 226
S +DLIQEG +GL+RGA++F+ +RGYK STY +WWI+QA+ R+I+++SRTIRLP + +
Sbjct: 370 SFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEI 429
Query: 227 VAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGC--- 283
++++++ + +L R PT E+A+ + + V ++ + + PISL V +
Sbjct: 430 ISRMSKVERQMVLKLGRDPTHEELADAMEMTVEKIKQIKKASLVPISLSQTVNNSNGEDK 489
Query: 284 MTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEI 343
T++D + PE K L+K++L+ +L TL+ RE D+LRL +GLD + +EI
Sbjct: 490 RTVEDTLIDDYTEHPEGETGKVLLKEDLENVLNTLNPRERDVLRLRYGLDDGRVKTLEEI 549
Query: 344 GRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
G + S++RERIRQI AL KL+Q + L+ Y+
Sbjct: 550 GNVFSVTRERIRQIEAKALRKLRQPSRNGILREYL 584
>gi|162447798|ref|YP_001620930.1| DNA-directed RNA polymerase subunit D [Acholeplasma laidlawii
PG-8A]
gi|161985905|gb|ABX81554.1| DNA-directed RNA polymerase subunit D [Acholeplasma laidlawii
PG-8A]
Length = 419
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 147/239 (61%), Gaps = 2/239 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E+++ + LVVSIA Y +GL DLIQEG++GL+R +F+ E+G+K STY WW
Sbjct: 179 AKEKLVEANYRLVVSIAKKYTQRGLLFLDLIQEGNMGLMRAVDKFDYEKGFKFSTYATWW 238
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RA+A+++RTIR+P M + K+ L + L R T EIAE ++I V
Sbjct: 239 IRQAITRAVADQARTIRIPVHMVETINKMIRIQRQLVQELGRDATIEEIAEKMDITPEKV 298
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ + PISL+ V + ++ D I P+ P + ++++K+ L E+L+TL++R
Sbjct: 299 QNIQRIAKEPISLEAPVGEEEDSSLGDFISDPNALNPHDYMMQEMVKKTLDEVLETLTDR 358
Query: 322 EADILRLHFG-LDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYMV 379
E +LRL +G LDG+T + +E+GR ++RERIRQI AL KL+ N LK + +
Sbjct: 359 EEKVLRLRYGLLDGKTH-TLEEVGREFGVTRERIRQIEAKALRKLRSPQRQNKLKEFYI 416
>gi|305664513|ref|YP_003860800.1| putative sigma factor A [Maribacter sp. HTCC2170]
gi|88708530|gb|EAR00766.1| putative sigma factor A [Maribacter sp. HTCC2170]
Length = 287
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 150/235 (63%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + RMP+ EIA+ L++ V V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQAHERMPSAEEIAKELDMTVEDVKQ 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + + D++ + P+R + + ++ E++ L+TL+ REA
Sbjct: 172 SLKNSGRHVSMDAPLIAGEDSNLYDVLRSGESPNPDRELLHESLRTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL GQ ++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLAGQHSMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|186681474|ref|YP_001864670.1| RNA polymerase sigma factor SigC [Nostoc punctiforme PCC 73102]
gi|186463926|gb|ACC79727.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 416
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 144/238 (60%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 176 QAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 235
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A L + +
Sbjct: 236 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLATELEMTPTQ 295
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L LL L+
Sbjct: 296 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDCVTPEEMLMRESLQRDLHHLLSDLTS 354
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 355 RERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 412
>gi|338214042|ref|YP_004658099.1| RpoD subfamily RNA polymerase sigma-70 subunit [Runella
slithyformis DSM 19594]
gi|336307865|gb|AEI50967.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Runella
slithyformis DSM 19594]
Length = 287
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 156/240 (65%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++++ ER+ ++ VVS+A YQ +GLSL DLI EG++GL++ A+RF+ RG+K +Y
Sbjct: 47 DQQALERLTKANLRFVVSVAKQYQNQGLSLGDLINEGNLGLIKAAQRFDETRGFKFISYA 106
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+Q+I++A+A +SR +RLP + G + KI++ + L ++ R P+ E+AE+L+I
Sbjct: 107 VWWIRQSILQALAEQSRIVRLPLNRVGSLNKISKTFSDLEQKFEREPSPEELAEVLDISA 166
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ V ++ + +S+D ++ D++ E P++ + +++E+ L TL
Sbjct: 167 NEVVDTLKISGRHVSMDAPFVQGEENSLLDVLENDMEEKPDQGLINDSLRKEVARALSTL 226
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE+D++ L+FGL+G+ P++ +EIG +L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 227 TQRESDVIALYFGLNGEHPMTLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKALKTYL 286
>gi|291546785|emb|CBL19893.1| RNA polymerase, sigma 70 subunit, RpoD [Ruminococcus sp. SR1/5]
Length = 375
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 92/237 (38%), Positives = 147/237 (62%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY WW
Sbjct: 138 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 197
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIAE +++ V V
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAEEMDMPVDRV 257
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ ++ P+SL+ + + + D I + +P L+K++L E+L TL++R
Sbjct: 258 REILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVEVLSTLTDR 317
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 318 EQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 374
>gi|160947542|ref|ZP_02094709.1| hypothetical protein PEPMIC_01477 [Parvimonas micra ATCC 33270]
gi|158446676|gb|EDP23671.1| RNA polymerase sigma factor RpoD [Parvimonas micra ATCC 33270]
Length = 382
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 143/238 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ RG+K STY W
Sbjct: 144 EAKKKLAETNLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDFRRGFKFSTYATW 203
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI R+IA+++RTIR+P M + K+ L + L R PT+ EI+E + I V
Sbjct: 204 WIRQAITRSIADQARTIRIPVHMVETINKLVRIERQLVQELGREPTNEEISEHMGIEVDK 263
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
V + + P+SL+ + + + D I P+ ++K++L ++L TLS+
Sbjct: 264 VNEIRKIAQEPVSLETPIGEEDDSHLGDFIEDETAIAPDEAANFSMLKEQLNQVLSTLSD 323
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +L L FGL+ TP + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 324 REKKVLELRFGLNDGTPRTLEEVGKEFEVTRERIRQIEAKALRKLKHPSRSQKLKDFL 381
>gi|334564689|ref|ZP_08517680.1| RNA polymerase sigma factor [Corynebacterium bovis DSM 20582]
Length = 577
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 144/239 (60%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 338 RRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 397
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R P E+A ++I V
Sbjct: 398 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPAPEELAREMDISVD 457
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 458 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLHTLS 517
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+REA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 518 DREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 576
>gi|266623970|ref|ZP_06116905.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
gi|288864209|gb|EFC96507.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
Length = 345
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 148/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ++E++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 99 KIELGDELAKEKLTEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYRKGYK 158
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + ++ + L + L R P+ E+A
Sbjct: 159 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLVRVSRQLLQELGREPSPEEVASR 218
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ V VR ++ ++ P+SL+ + + + D I +P ++ ++L E
Sbjct: 219 VDMPVERVREIMKVSQEPVSLETPIGEEEDSHLGDFIQDDQVAVPADAATFTMLHEQLME 278
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL+ERE +LRL FGLD P + +E+GR +++RERIRQI AL KL+ +
Sbjct: 279 VLDTLTEREQKVLRLRFGLDDGRPRTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSKK 338
Query: 374 LKVYM 378
LK Y+
Sbjct: 339 LKDYL 343
>gi|126434760|ref|YP_001070451.1| RNA polymerase sigma factor [Mycobacterium sp. JLS]
gi|126234560|gb|ABN97960.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 480
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 254 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 313
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 314 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 373
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 374 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 433
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 434 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 479
>gi|108799152|ref|YP_639349.1| RNA polymerase sigma factor [Mycobacterium sp. MCS]
gi|119868267|ref|YP_938219.1| RNA polymerase sigma factor [Mycobacterium sp. KMS]
gi|108769571|gb|ABG08293.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694356|gb|ABL91429.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
Length = 480
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 254 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 313
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 314 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 373
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 374 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 433
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 434 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 479
>gi|410666950|ref|YP_006919321.1| RNA polymerase sigma factor RpoD [Thermacetogenium phaeum DSM
12270]
gi|409104697|gb|AFV10822.1| RNA polymerase sigma factor RpoD [Thermacetogenium phaeum DSM
12270]
Length = 361
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 147/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 116 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYK 175
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EIA+
Sbjct: 176 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQELGRDPMPEEIAKE 235
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++I V VR ++ + P+SL+ + + + D I D P L+K++L+E
Sbjct: 236 MDIPVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDEDALAPAEAASFILLKEQLEE 295
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TL+ RE D+LRL FGL+ + +E+G+ ++RERIRQI AL KL+ +
Sbjct: 296 VLETLTPRERDVLRLRFGLEDGKARTLEEVGQKFKVTRERIRQIEAKALRKLRHPSRSKK 355
Query: 374 LKVYM 378
LK Y+
Sbjct: 356 LKDYL 360
>gi|56752254|ref|YP_172955.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 6301]
gi|81300658|ref|YP_400866.1| RNA polymerase sigma factor SigC [Synechococcus elongatus PCC 7942]
gi|56687213|dbj|BAD80435.1| group2 RNA polymerase sigma factor RpoD5 [Synechococcus elongatus
PCC 6301]
gi|81169539|gb|ABB57879.1| group2 RNA polymerase sigma factor SigC [Synechococcus elongatus
PCC 7942]
Length = 398
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 153/252 (60%), Gaps = 4/252 (1%)
Query: 129 NLVKYKILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFN 187
+L + K +CKE + +++ +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+
Sbjct: 145 DLEELKQVCKEGQRAKDHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFD 204
Query: 188 PERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTD 247
P +GY+ STY YWWI+Q I RAIA +SRTIRLP + + +I +A +++ R
Sbjct: 205 PTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKAQRKIAQTKGRTANL 264
Query: 248 SEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLM 307
EIA+ L + VR + R ISL+ V + D++ D T ER+ Q+ L
Sbjct: 265 EEIAQELEMTPDQVREVLLRVPKSISLETRVGKEKDTELGDLLETTDFTPEERLTQESL- 323
Query: 308 KQELKELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
+L+ LL L+ RE D++R+ FGL DGQ S EIG++L LSRER+RQI AL KL+
Sbjct: 324 SNDLQRLLLELNHRERDVIRMRFGLRDGQI-YSLAEIGQVLDLSRERVRQIEAKALQKLR 382
Query: 367 QTNILNNLKVYM 378
N ++ Y+
Sbjct: 383 HPRRRNQIRDYL 394
>gi|406889267|gb|EKD35502.1| hypothetical protein ACD_75C01883G0001, partial [uncultured
bacterium]
Length = 387
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 147/237 (62%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++ +IR+ LVVSIA Y +GL+L DLIQEG++GL+R RF+ +G K STY WW
Sbjct: 151 AKDTMIRANLRLVVSIAKRYMHQGLTLADLIQEGNLGLMRAVFRFDYTKGNKFSTYASWW 210
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAI +K+RTIRLP + ++ +A L + L R PT EI++ N+ + +
Sbjct: 211 IRQAITRAILDKTRTIRLPVHFLELRSQFFKAFYALFKELGREPTPLEISKATNLPMDKI 270
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+E +R PISL+ V D T+ D + + P VQ + + + ++L+TLSER
Sbjct: 271 LSILEASREPISLETPVGDDDS-TLGDFLENQESQSPYDAVQTRELSGRVNDILETLSER 329
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E I+RL FG+ + + +EIG+L ++SRERIRQI AL +L+ ++ + LK ++
Sbjct: 330 EEKIIRLRFGIGEKAEYTLEEIGKLFNVSRERIRQIEKKALNRLRHSSRRDKLKFFI 386
>gi|404447267|ref|ZP_11012342.1| RNA polymerase sigma factor [Mycobacterium vaccae ATCC 25954]
gi|403649131|gb|EJZ04562.1| RNA polymerase sigma factor [Mycobacterium vaccae ATCC 25954]
Length = 459
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 233 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 292
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 293 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 352
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 353 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 412
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 413 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 458
>gi|434393099|ref|YP_007128046.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
gi|428264940|gb|AFZ30886.1| RNA polymerase, sigma subunit, RpsC/SigC [Gloeocapsa sp. PCC 7428]
Length = 413
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 143/237 (60%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DL+QEG++GL R +F+P +GY+ STY YWW
Sbjct: 174 AKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVDKFDPTKGYRFSTYAYWW 233
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A +S+ R PT +IA L + V
Sbjct: 234 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPTIDDIAAELEMTPPQV 293
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + +++ D PE ++ ++ ++++L+ LL L++R
Sbjct: 294 REVLLRVPRSVSLETKVGKEKDTELGELLE-TDSISPEEVLMREALQRDLQHLLADLTDR 352
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D++ + FGL S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 353 ERDVILMRFGLGDGHSYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNQVRDYL 409
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 155/245 (63%), Gaps = 1/245 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG++GL R +++F+P++GYK S
Sbjct: 143 LYQGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFS 202
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI RAIAN +RTIRLP + + K+ +A L ++L R P++ E+AE L
Sbjct: 203 TYAYWWIRQAITRAIANDARTIRLPIHIVEKLNKLKKAQRELKQQLGRNPSEIELAESLE 262
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I S +R + R +SL+ V + D++ D PE + + +M+QE+ E+L
Sbjct: 263 IPPSQLRQLQQLRRQSLSLNHRVGKEEDTELMDLLEDEDNQSPEAKMNESMMRQEIWEVL 322
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ RE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +I L
Sbjct: 323 GDVLTPREKDVISLRYGLTTSEPCTLEEVGNMFNLSRERVRQIQSKAMRKLRRPHIAKRL 382
Query: 375 KVYMV 379
K ++V
Sbjct: 383 KGWLV 387
>gi|381183523|ref|ZP_09892252.1| RNA polymerase sigma factor RpoD [Listeriaceae bacterium TTU
M1-001]
gi|380316582|gb|EIA19972.1| RNA polymerase sigma factor RpoD [Listeriaceae bacterium TTU
M1-001]
Length = 371
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 126 RIEAGDVEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFK 185
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E
Sbjct: 186 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEE 245
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 246 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 305
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ +
Sbjct: 306 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 365
Query: 374 LKVYM 378
LK ++
Sbjct: 366 LKDFL 370
>gi|441207686|ref|ZP_20973626.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|440627869|gb|ELQ89674.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 454
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 228 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 287
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 288 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 347
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 348 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 407
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 408 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 453
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 141/224 (62%), Gaps = 1/224 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ ++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK STY YWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWW 151
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA ++R IRLP + + KI + L+++L R T +EIAE L + S +
Sbjct: 152 IRQAITRAIAQQARAIRLPIHITEKLNKIKKVQRELAQKLGRNATPTEIAEELGLEPSQI 211
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R PISLD V D + +++ DE PE + ++ M+Q++ +L L+ +
Sbjct: 212 REYLSIARQPISLDVRVGDNQDTELSELLED-DENSPETYLTQESMRQDIDSMLSELTPQ 270
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
+ ++L L FGL+ +S ++G+ L+LSRER+RQ+ AL KL
Sbjct: 271 QREVLSLRFGLEDGNELSLAKVGKKLNLSRERVRQLEHQALAKL 314
>gi|372222826|ref|ZP_09501247.1| RNA polymerase sigma factor rpoD [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 287
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 150/235 (63%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R+P+ EIA+ L++ V V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQAHERVPSAEEIAKELDMTVEDVKQ 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + D + D++ + P++ + ++ E++ L+TL+ REA
Sbjct: 172 SLKNSGRHVSMDAPLIDGEDSNLYDVLKSGESPNPDKDLLHDSLRTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL GQ ++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLAGQHSMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|229491308|ref|ZP_04385134.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070925|ref|ZP_21974152.1| RNA polymerase sigma factor [Rhodococcus qingshengii BKS 20-40]
gi|229321847|gb|EEN87642.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452760008|gb|EME18351.1| RNA polymerase sigma factor [Rhodococcus qingshengii BKS 20-40]
Length = 430
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 204 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 263
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 264 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 323
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 324 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 383
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 384 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 429
>gi|298208827|ref|YP_003717006.1| sigma factor A [Croceibacter atlanticus HTCC2559]
gi|83848754|gb|EAP86623.1| putative sigma factor A [Croceibacter atlanticus HTCC2559]
Length = 288
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 148/236 (62%), Gaps = 1/236 (0%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL L DLI EG++GL++ AKRF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLRLPDLINEGNVGLVKAAKRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A SR +RLP + G++ KI + + L + R P+ +EIA+ L++ VS V+
Sbjct: 112 QSILQALAEHSRVVRLPLNKIGVINKINKTFSYLEQAYERPPSAAEIAKELDMPVSKVKT 171
Query: 264 AIERTRHPISLDGAVTD-RGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSERE 322
A++ + +S+D + + D++ + P+ + + + E++ L TL+ERE
Sbjct: 172 AMKNSGRSLSMDAPFQEGENDSNLYDVLKSGESPSPDNNLMQDSLSVEIERALDTLTERE 231
Query: 323 ADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
AD++RL++GL GQ P++ +EIG LSRER+RQIR + +L+ + LK Y+
Sbjct: 232 ADVIRLNYGLGGQQPLTLQEIGETFDLSRERVRQIREKGIRRLRHESKSKILKKYL 287
>gi|397679869|ref|YP_006521404.1| RNA polymerase sigma factor rpoD [Mycobacterium massiliense str. GO
06]
gi|395458134|gb|AFN63797.1| RNA polymerase sigma factor rpoD [Mycobacterium massiliense str. GO
06]
Length = 380
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 154 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 213
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 214 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 273
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L+TLSEREA ++RL FGL
Sbjct: 274 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLETLSEREAGVVRLRFGL 333
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 334 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 379
>gi|345867867|ref|ZP_08819868.1| RNA polymerase sigma factor, sigma-70 family protein [Bizionia
argentinensis JUB59]
gi|344047789|gb|EGV43412.1| RNA polymerase sigma factor, sigma-70 family protein [Bizionia
argentinensis JUB59]
Length = 287
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 152/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA+ L++ ++ V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQAHERPPSAEEIAKELDMTINDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + + + D++ + P+R + ++ ++ E++ L+TL+ REA
Sbjct: 172 SMKNSGRHVSMDAPLVEGEDSNLYDVLNSGESPNPDRELLQESLRTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGNQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|254422659|ref|ZP_05036377.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196190148|gb|EDX85112.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 298
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 144/233 (61%), Gaps = 1/233 (0%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
I+ +++ R++ + LVVS+A Y + + L DLIQEG+IG+ RG ++F+P +GY+
Sbjct: 56 IVTAGEQAKHRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPSKGYRF 115
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY YWWI+QAI RAIA KSRTIRLP + + KI +A +++ R PT SEIA+
Sbjct: 116 STYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQFTQQHGRTPTASEIAQAT 175
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+ VR ++R+R P+SLD V D + D++ +T P+ +K +LK +
Sbjct: 176 GFTIKQVREYLDRSRQPLSLDLKVGDNQDTQLGDLLEDDGQT-PDDYATASSLKSDLKRI 234
Query: 315 LQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ L+ ++ ++ L FGL+ ++ +IG +L +SRER+RQI ALTKL++
Sbjct: 235 MADLTPQQQQVIALRFGLEDGKNMTLAKIGAMLDISRERVRQIEREALTKLRK 287
>gi|406893396|gb|EKD38473.1| hypothetical protein ACD_75C00725G0001 [uncultured bacterium]
Length = 313
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 147/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
++++E ++R+ LV+S++ + +GL DLIQEG+IGL++ ++F+ RGYK STY
Sbjct: 73 KQAKEGLVRANLRLVISVSKKFVNRGLQFSDLIQEGNIGLMKAVEKFDYHRGYKFSTYAT 132
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI R IA++ RTIRLP M + ++ A+ R PT E+A+ L V
Sbjct: 133 WWIRQAITRGIADQGRTIRLPVHMIETINRLLRASKDFMLEEHREPTPEEMAKHLGTEVG 192
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
++ A++ + ISLD V D G + D I D+ P+++ ++Q L +++ +LS
Sbjct: 193 KIKSALKIAKDAISLDTPVGDDGETFLGDFIEDKDKLGPDQISMVASLRQCLNQVMSSLS 252
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
REA +LR+ +G+D + + +E+G+ +++RERIRQI A+ KL+ + + L+V+M
Sbjct: 253 PREAKVLRMRYGIDVECDHTLEEVGKCFAVTRERIRQIEAQAIMKLKHPSRVEELRVFM 311
>gi|343521231|ref|ZP_08758199.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 393
str. F0440]
gi|343396437|gb|EGV08974.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 393
str. F0440]
Length = 382
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 143/238 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ RG+K STY W
Sbjct: 144 EAKKKLAETNLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDFRRGFKFSTYATW 203
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI R+IA+++RTIR+P M + K+ L + L R PT+ EI+E + I V
Sbjct: 204 WIRQAITRSIADQARTIRIPVHMVETINKLVRIERQLVQELGREPTNEEISEHMGIEVDK 263
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
V + + P+SL+ + + + D I P+ ++K++L ++L TLS+
Sbjct: 264 VNEIRKIAQEPVSLETPIGEEDDSHLGDFIEDETAIAPDEAANFSMLKEQLNQVLSTLSD 323
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +L L FGL+ TP + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 324 REKKVLELRFGLNDGTPRTLEEVGKEFEVTRERIRQIEAKALRKLKHPSRSQKLKDFL 381
>gi|409358547|ref|ZP_11236910.1| RNA polymerase sigma factor [Dietzia alimentaria 72]
Length = 462
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 138/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 236 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 295
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 296 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 355
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 356 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLRSVLDTLSEREAGVVRLRFGL 415
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 416 TDGLPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 461
>gi|374324890|ref|YP_005078019.1| RNA polymerase sigma factor rpod [Paenibacillus terrae HPL-003]
gi|357203899|gb|AET61796.1| RNA polymerase sigma factor rpod [Paenibacillus terrae HPL-003]
Length = 377
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ E+G+K STY
Sbjct: 137 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYEKGFKFSTYA 196
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT E+A + + V
Sbjct: 197 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEVAAEMELSV 256
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I + P +L+K++L+++L TL
Sbjct: 257 EKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTL 316
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 317 TEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
>gi|118618666|ref|YP_906998.1| RNA polymerase sigma factor [Mycobacterium ulcerans Agy99]
gi|118570776|gb|ABL05527.1| RNA polymerase sigma factor SigA [Mycobacterium ulcerans Agy99]
Length = 501
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 257 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 316
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 317 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 376
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 377 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 436
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 437 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 495
Query: 374 LKVYM 378
L+ Y+
Sbjct: 496 LRDYL 500
>gi|389575813|ref|ZP_10165841.1| RNA polymerase sigma factor, sigma-70 family [Eubacterium
cellulosolvens 6]
gi|389311298|gb|EIM56231.1| RNA polymerase sigma factor, sigma-70 family [Eubacterium
cellulosolvens 6]
Length = 373
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 147/237 (62%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY WW
Sbjct: 136 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 195
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + L + R PT EIA+ +N+ V V
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEYGREPTPEEIAKNMNMSVERV 255
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ ++ P+SL+ + + + D I + +P ++K++L+E+L TL+ER
Sbjct: 256 REILKISQEPVSLETPIGEEEDSHLGDFIQDENVPVPADAAAFTMLKEQLEEVLGTLAER 315
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 316 EQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 372
>gi|228472793|ref|ZP_04057551.1| RNA polymerase sigma factor RpoD [Capnocytophaga gingivalis ATCC
33624]
gi|228275844|gb|EEK14610.1| RNA polymerase sigma factor RpoD [Capnocytophaga gingivalis ATCC
33624]
Length = 287
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 151/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
ER+ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 ERLTKANLRFVVSVAKQYQNQGLTLPDLINEGNMGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R+P+ EIA+ L++ V+ V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKMYAYLEQTHERVPSAEEIAKELDMSVNDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + IS+D + + + D++ + P++ + + +K E++ L+TL+ REA
Sbjct: 172 SMKNSGRHISMDAPLVEGEDSNLYDVLRSGESPNPDKELMHESLKTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL P++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGENYPMTLEEIGETFELTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 152/247 (61%), Gaps = 7/247 (2%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ + + + +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 84 QTVTQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 143
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA + RTIRLP + + KI + L+++L R PT +EIA+
Sbjct: 144 FSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPTEIAKE 203
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIP--GPDETMPERMVQKQLMKQEL 311
L + + +R + R P+SLD V D +Q+++ GP PE ++ ++Q+L
Sbjct: 204 LELEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLEDDGPS---PEYYTTQEFLRQDL 260
Query: 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
LL L+ ++ +++ L FGL+ +S ++G L+LSRER+RQ+ AL L++
Sbjct: 261 NNLLAELTPQQREVVALRFGLEDGNELSLAKVGERLNLSRERVRQLEHQALAHLRRRRA- 319
Query: 372 NNLKVYM 378
N+K Y+
Sbjct: 320 -NVKEYV 325
>gi|318042101|ref|ZP_07974057.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CB0101]
Length = 309
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 99/250 (39%), Positives = 151/250 (60%), Gaps = 1/250 (0%)
Query: 119 LDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIG 178
L +E E Y + K + R S+ER++++ LVVS+A YQGKGL L DLIQEGS+G
Sbjct: 51 LTEEEPENGYTDQQKKTIRVGRRSKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLG 110
Query: 179 LLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLS 238
L R ++F+P RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ + I + + L+
Sbjct: 111 LERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTAIRKVSLDLA 170
Query: 239 RRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDETM 297
+L MP+ EIAE +++ + + + + SLD V + G + D+I
Sbjct: 171 HKLGAMPSRKEIAEAMDMPIDELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADNSHVE 230
Query: 298 PERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQI 357
P V++ + ++L L L+E+E +L L FGL+G+ + EIGR+L +SRER+RQ+
Sbjct: 231 PLDQVERGMHHEQLGRWLSHLTEQERQVLELRFGLEGEERHTLAEIGRMLDVSRERVRQV 290
Query: 358 RGIALTKLQQ 367
AL KL+
Sbjct: 291 ELKALRKLRH 300
>gi|373458557|ref|ZP_09550324.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Caldithrix abyssi
DSM 13497]
gi|371720221|gb|EHO41992.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Caldithrix abyssi
DSM 13497]
Length = 281
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 138/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
VVS+A YQ GLSL+DLI EG++GL++ A RF+ RG+K +Y WWIKQ+I++AIA
Sbjct: 55 FVVSVAKSYQNYGLSLEDLINEGNLGLMKAAYRFDETRGFKFISYAVWWIKQSILQAIAE 114
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SR +RLP + G + KI + + L + R PT EIA +L + + I+ +
Sbjct: 115 QSRLVRLPLNRVGTLTKIGKVYSQLEQEYEREPTPEEIANVLEVDSGDITDTIKMATRSV 174
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
S+D + + DII + P+ V + +K+E+ +L TL+ REA IL+L+FGL
Sbjct: 175 SMDSPLQKNSDSRLIDIIQNQQDPEPDAEVMGESLKEEVNYILSTLTAREARILKLYFGL 234
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DG+ P + +EIG L+RER+RQI+ AL +L+ ++ L+ Y+
Sbjct: 235 DGEKPHTLEEIGVKFKLTRERVRQIKEKALRRLRHSSRSKVLRYYL 280
>gi|33862185|ref|NP_893746.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
gi|33634403|emb|CAE20088.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 333
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 146/238 (61%), Gaps = 3/238 (1%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY YWW
Sbjct: 98 AKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAYWW 157
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA KSR IRLP + M+ K+ + LS+ + R PT SE+A+ + + V
Sbjct: 158 IRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRTPTISELAKYVELPEDDV 217
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ + + P+SL+ V D + D++ G E +P+ ++ M+ +L LL L +
Sbjct: 218 KDLMCKAGQPVSLETKVGDGEDTVLLDLLAG-GEDLPDEQIEMDCMRGDLHSLLHQLPDL 276
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYMV 379
+ +LR+ +G+DG P+S IGR+L +SR+R+R + L L++ + +++ Y V
Sbjct: 277 QCRVLRMRYGMDGDEPMSLTGIGRVLGISRDRVRNLERDGLRGLRRLS--ESVEAYFV 332
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 144/229 (62%), Gaps = 1/229 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++I++ LVVSIA YQ + L DLIQEG++GL RG ++F+P GYK STY YWW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP MA + KI LS++L + +EIA+ LN+ S +
Sbjct: 157 IRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQI 216
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ R P+SLD + +QD++ D PER +++L+ Q++ LL L+ +
Sbjct: 217 REYLQLVRQPVSLDMRIGFEQDTQLQDLLKD-DGMSPERYAERELLYQDIHNLLAKLTPQ 275
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
+ ++L L FGL G ++ +I + + +SRER+RQ+ ALT L++ I
Sbjct: 276 QKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLRRYGI 324
>gi|392961840|ref|ZP_10327294.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans DSM 17108]
gi|421055753|ref|ZP_15518715.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B4]
gi|392439518|gb|EIW17229.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans B4]
gi|392453407|gb|EIW30288.1| RNA polymerase sigma factor RpoD [Pelosinus fermentans DSM 17108]
Length = 371
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 145/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 131 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYA 190
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIA+ ++I V
Sbjct: 191 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPQPEEIAKEMDISV 250
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P L+K++L+E+L+TL
Sbjct: 251 ERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETL 310
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 311 TPREEKVLRLRFGLDDGRARTLEEVGQHFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 370
>gi|319955596|ref|YP_004166863.1| RNA polymerase, sigma 70 subunit, rpod subfamily [Cellulophaga
algicola DSM 14237]
gi|319424256|gb|ADV51365.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cellulophaga
algicola DSM 14237]
Length = 287
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 146/226 (64%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
VVS+A YQ +GL+L DLI EG++GL++ AKRF+ RG+K +Y WWI+QAI++A+A
Sbjct: 61 FVVSVAKQYQNQGLTLPDLINEGNVGLVKAAKRFDETRGFKFISYAVWWIRQAILQALAE 120
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SR +RLP + G + KI +A + L + R P+ EIA+ L + VS V+ +++ T +
Sbjct: 121 QSRIVRLPLNKIGSINKIKKAFSYLEQAHERPPSAEEIAKELEMTVSEVQQSLKNTGRHV 180
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
S+D + + + ++I + P++ + +Q + E+ L+TLS+READ+++L++G+
Sbjct: 181 SMDAPLKEGEDSNLYNVIGSGESPNPDKQLLQQSLNIEINRALETLSQREADVVKLYYGI 240
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
Q ++ +EIG+ L+RER+RQIR A+ KL+ + LK Y+
Sbjct: 241 GDQHSMTLEEIGQTFDLTRERVRQIREKAIRKLKHNSRSKILKTYL 286
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 137/225 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++Q ++I + LVVS+A Y +G+ DLIQEG+IGL+R ++FN ERG++ STY +W
Sbjct: 123 QAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNIGLIRATEKFNAERGFRFSTYAHW 182
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I R IAN++RTIRLP M V + N L + R PT++E+AE L I V
Sbjct: 183 WIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKLQGRRPTEAELAEALGIKVKK 242
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
+R+ + P+SLD V G + D++ + P + + Q M+Q+++ +QTL
Sbjct: 243 LRMIQQAAALPLSLDVPVGQEGESRLGDLLQDERQEQPFQGILVQSMQQDVRSAMQTLKP 302
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
E +L L +GLDGQ + +E+G +L+RERIRQI AL KL
Sbjct: 303 IERQVLELRYGLDGQQARTLREVGDHFNLTRERIRQIERDALRKL 347
>gi|294507979|ref|YP_003572037.1| RNA polymerase sigma-70 factor [Salinibacter ruber M8]
gi|294344307|emb|CBH25085.1| RNA polymerase sigma-70 factor [Salinibacter ruber M8]
Length = 279
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 152/239 (63%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+ ++ R+ VVS+A YQG+GLSL DLI EG+ GL++ AKRF+ RG+K +Y
Sbjct: 39 DEEALHKLCRANLRFVVSVAKKYQGQGLSLADLINEGNYGLIKAAKRFDETRGFKFISYA 98
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI++A+A +SR +RLP + G ++KI +A+ L + L R P E+AE L I V
Sbjct: 99 VWWIRQAILQALAEQSRVVRLPLNRIGTISKIRKASARLQQDLDRKPNIEELAEELEIDV 158
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR A++ T +S+D + ++ D++P D P+ + + +K +++ L L
Sbjct: 159 QKVREAMKHTSRHLSMDAPFNEEDDNSLLDVLPDEDNDSPDEEMLSESVKIDIERALSAL 218
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
+REA+I RL+FG+ + P++ +EIG+ L+RER+RQI+ AL KL+Q + +L+ +
Sbjct: 219 HDREAEITRLYFGIGREHPLTLEEIGKRFDLTRERVRQIKEKALRKLRQRHSKQDLQPH 277
>gi|260588574|ref|ZP_05854487.1| RNA polymerase sigma factor RpoD [Blautia hansenii DSM 20583]
gi|260541049|gb|EEX21618.1| RNA polymerase sigma factor RpoD [Blautia hansenii DSM 20583]
Length = 330
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 146/237 (61%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY WW
Sbjct: 93 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 152
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + L + L R P EIAE +N+ V V
Sbjct: 153 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPHPEEIAEEMNMSVERV 212
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ ++ P+SL+ + + + D I + +P L+K++L E+L TL+ER
Sbjct: 213 REILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVEVLGTLTER 272
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 273 EQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 329
>gi|381187438|ref|ZP_09895002.1| RNA polymerase sigma factor RpoD [Flavobacterium frigoris PS1]
gi|379650566|gb|EIA09137.1| RNA polymerase sigma factor RpoD [Flavobacterium frigoris PS1]
Length = 287
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 158/245 (64%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++++ E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 KIKAGDQKALEKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + +L + R P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKMYALLEQSNERPPSAEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ V+ V+ +++ + +S+D + + + D++ + P+R + + ++ E++
Sbjct: 162 LDMTVNDVKESMKNSGRHLSMDAPLVEGEDSNLYDVLRSGESPNPDRELIHESLRTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 SLETLTPREADVVRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|346306557|ref|ZP_08848712.1| RNA polymerase sigma factor rpoD [Dorea formicigenerans 4_6_53AFAA]
gi|345908260|gb|EGX77917.1| RNA polymerase sigma factor rpoD [Dorea formicigenerans 4_6_53AFAA]
Length = 376
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ ++++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 136 DEDAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGFKFSTYA 195
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA L++ V
Sbjct: 196 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPV 255
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P + L+K++L E+L TL
Sbjct: 256 ERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTL 315
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FG+D + +E+G+ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 316 TEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 375
>gi|225011103|ref|ZP_03701566.1| RNA polymerase, sigma 70 subunit, RpoD family [Flavobacteria
bacterium MS024-3C]
gi|225004737|gb|EEG42696.1| RNA polymerase, sigma 70 subunit, RpoD family [Flavobacteria
bacterium MS024-3C]
Length = 287
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 148/235 (62%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
ER+ + VVS+A YQ +GL+L DLI EG++GL++ AKRF+ RG+K +Y WWI+
Sbjct: 52 ERLTTANLRFVVSVAKQYQNQGLTLPDLINEGNVGLVKAAKRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
QAI++A+A ++R +RLP + G + KI +A + L + +R P+ EIA+ L + VS V+
Sbjct: 112 QAILQALAEQARIVRLPLNKIGSINKINKAFSYLEQAHQRPPSPEEIAKELEMTVSDVKQ 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + D ++ D++ D P++ + + + E+ L TLS REA
Sbjct: 172 SLKNSGRHVSMDAPLIDGENSSLYDVLDYGDSPRPDQALIQSSLHTEITRALDTLSPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D+++L +G+ Q P++ EIG L+RER+RQIR A+ KL+ ++ LK Y+
Sbjct: 232 DVIKLFYGIGEQPPMTLAEIGLTFDLTRERVRQIREKAIRKLRHSSKNKLLKTYL 286
>gi|403380483|ref|ZP_10922540.1| RpoD subfamily RNA polymerase sigma-70 subunit [Paenibacillus sp.
JC66]
Length = 376
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 152/245 (62%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I+ + +++R+ + LVVSIA Y G+G+ L DLIQEG++GL++ ++F+ +G+K
Sbjct: 131 RIVEGDAAAKKRLAEANLRLVVSIARRYAGRGMLLLDLIQEGNMGLIKAVEKFDYTKGFK 190
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI R+IA+++RTIR+P M + K + L + + R PT EIA+
Sbjct: 191 FSTYATWWIRQAITRSIADQARTIRIPVHMVETMNKFTRVSRQLLQEMGREPTPEEIAKE 250
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + + VR ++ ++ P+SL+ V + + D I D P L+K++L++
Sbjct: 251 MELSLDKVREIMKISQEPVSLETPVGEESESKLGDFIEDHDVMAPSDSAAYTLLKEQLED 310
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGL+ P + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 311 VLDTLTDREENVLRLRFGLEDGNPRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSRR 370
Query: 374 LKVYM 378
LK ++
Sbjct: 371 LKDFL 375
>gi|166030947|ref|ZP_02233776.1| hypothetical protein DORFOR_00628 [Dorea formicigenerans ATCC
27755]
gi|166029214|gb|EDR47971.1| RNA polymerase sigma factor RpoD [Dorea formicigenerans ATCC 27755]
Length = 382
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ ++++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 142 DEDAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGFKFSTYA 201
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA L++ V
Sbjct: 202 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPV 261
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P + L+K++L E+L TL
Sbjct: 262 ERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTL 321
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FG+D + +E+G+ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 322 TEREQKVLRLRFGMDDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 381
>gi|124026883|ref|YP_001015998.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961951|gb|ABM76734.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 340
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 144/236 (61%), Gaps = 2/236 (0%)
Query: 132 KYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
K+KI +R +++R++ + LVVS+A YQ +GL L DL+QEG+IGL R +F+P G
Sbjct: 97 KHKIKMGKR-ARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAIGLERAVDKFDPAMG 155
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
YK STY YWWI+Q + RAI N +RTIRLP ++ ++K+ + LS R R P E+A
Sbjct: 156 YKFSTYAYWWIRQGMTRAIDNSARTIRLPIHISEKLSKMRRISRELSHRFGRQPNRLELA 215
Query: 252 EMLNIHVSTVRLAIERTRHPISLDG-AVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
+ I + + ++ SLD A + T+ ++IP P+ P + + + K+
Sbjct: 216 NAMGIEPQDLEDLVSQSAPCASLDAHARGEEDRSTLGELIPDPNSDEPMEGMDRSIQKEH 275
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
L L L+ERE I+RL FGLDG+ P++ EIGR +++SRER+RQ+ A+ KL+
Sbjct: 276 LGGWLSQLNEREQKIMRLRFGLDGEEPLTLAEIGRQINVSRERVRQLEAKAILKLR 331
>gi|319949012|ref|ZP_08023109.1| RNA polymerase sigma factor [Dietzia cinnamea P4]
gi|319437300|gb|EFV92323.1| RNA polymerase sigma factor [Dietzia cinnamea P4]
Length = 460
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 138/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 234 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 293
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 294 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 353
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 354 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLRSVLDTLSEREAGVVRLRFGL 413
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 414 TDGLPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 459
>gi|183982025|ref|YP_001850316.1| RNA polymerase sigma factor [Mycobacterium marinum M]
gi|183175351|gb|ACC40461.1| RNA polymerase sigma factor SigA [Mycobacterium marinum M]
Length = 501
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 257 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 316
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 317 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 376
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 377 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 436
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 437 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 495
Query: 374 LKVYM 378
L+ Y+
Sbjct: 496 LRDYL 500
>gi|254432880|ref|ZP_05046583.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Cyanobium sp. PCC 7001]
gi|197627333|gb|EDY39892.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Cyanobium sp. PCC 7001]
Length = 331
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 151/240 (62%), Gaps = 1/240 (0%)
Query: 128 YNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFN 187
Y+ + K+L + S++R++++ LVVS+A YQGKGL L DLIQEGS+GL R ++F+
Sbjct: 82 YSDHEKKLLRIGKRSKQRMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFD 141
Query: 188 PERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTD 247
P RGYK STY +WWI+Q++ RAIA +SRTIRLP ++ ++ I + + L+ +L MP+
Sbjct: 142 PTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLSAIRKVSLDLAHKLGAMPSR 201
Query: 248 SEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDETMPERMVQKQL 306
EIAE +++ + + + + SLD V D G + D+I E P V++ L
Sbjct: 202 HEIAEAMDMPLDELDGLLRQALTTSSLDAPVNGDEGRSFLGDLIADSSEEEPLDRVERGL 261
Query: 307 MKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
++L + LSE+E +L+L FGL+G+ + EIGR L +SRER+RQ+ AL KL+
Sbjct: 262 NHEQLDHWMNHLSEQERHVLQLRFGLEGRDRHTLAEIGRQLDVSRERVRQVELKALRKLR 321
>gi|299822900|ref|ZP_07054786.1| DNA-directed RNA polymerase sigma subunit RpoD [Listeria grayi DSM
20601]
gi|299816429|gb|EFI83667.1| DNA-directed RNA polymerase sigma subunit RpoD [Listeria grayi DSM
20601]
Length = 389
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 146/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY W
Sbjct: 151 EAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATW 210
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 211 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEK 270
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I + T P +L+K++L+++L TL++
Sbjct: 271 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTD 330
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ + LK ++
Sbjct: 331 REENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 388
>gi|85816878|gb|EAQ38063.1| RNA polymerase sigma-70 factor RpoD [Dokdonia donghaensis MED134]
Length = 287
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 154/245 (62%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + + E++ ++ VVS++ YQ +GL+L DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 RIKAGDHRALEQLTKANLRFVVSVSKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQANERPPSPEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ + V+ +++ + IS+D + + + D++ + P+R + + +K E++
Sbjct: 162 LDMTIKDVKESLKNSGRHISMDAPLVEGEDSNLYDVLNSGESPNPDRALLHESLKTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL Q P+S +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ALETLTPREADVVRLYFGLGDQRPMSLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|402300277|ref|ZP_10819798.1| RNA polymerase sigma factor RpoD [Bacillus alcalophilus ATCC 27647]
gi|401724574|gb|EJS97923.1| RNA polymerase sigma factor RpoD [Bacillus alcalophilus ATCC 27647]
Length = 372
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 148/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ ++G+K
Sbjct: 127 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYDKGFK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + R PT E+AE
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDFGREPTPEEVAEE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + VR ++ + P+SL+ + + + D I D P +L+K++L++
Sbjct: 247 MELTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLED 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 366
Query: 374 LKVYM 378
LK ++
Sbjct: 367 LKDFL 371
>gi|335047747|ref|ZP_08540768.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 110
str. F0139]
gi|333761555|gb|EGL39110.1| RNA polymerase sigma factor RpoD [Parvimonas sp. oral taxon 110
str. F0139]
Length = 382
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 143/238 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ RG+K STY W
Sbjct: 144 EAKKKLAETNLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDFRRGFKFSTYATW 203
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI R+IA+++RTIR+P M + K+ L + L R PT+ EI+E + I V
Sbjct: 204 WIRQAITRSIADQARTIRIPVHMVETINKLVRIERQLVQELGREPTNEEISEHMGIEVEK 263
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
V + + P+SL+ + + + D I P+ ++K++L ++L TLS+
Sbjct: 264 VNEIRKIAQEPVSLETPIGEEDDSHLGDFIEDETAIAPDEAANFSMLKEQLNQVLSTLSD 323
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +L L FGL+ TP + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 324 REKKVLELRFGLNDGTPRTLEEVGKEFEVTRERIRQIEAKALRKLKHPSRSQKLKDFL 381
>gi|313206169|ref|YP_004045346.1| RNA polymerase, sigma 70 subunit, rpod subfamily [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|383485482|ref|YP_005394394.1| RNA polymerase, sigma 70 subunit, rpod subfamily [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|386321843|ref|YP_006018005.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Riemerella anatipestifer RA-GD]
gi|407451975|ref|YP_006723700.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Riemerella anatipestifer RA-CH-1]
gi|416110733|ref|ZP_11592277.1| RNA polymerase sigma factor RpoD [Riemerella anatipestifer RA-YM]
gi|442314637|ref|YP_007355940.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Riemerella anatipestifer RA-CH-2]
gi|312445485|gb|ADQ81840.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|315023147|gb|EFT36160.1| RNA polymerase sigma factor RpoD [Riemerella anatipestifer RA-YM]
gi|325336386|gb|ADZ12660.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Riemerella anatipestifer RA-GD]
gi|380460167|gb|AFD55851.1| RNA polymerase, sigma 70 subunit, rpod subfamily [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|403312959|gb|AFR35800.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Riemerella anatipestifer RA-CH-1]
gi|441483560|gb|AGC40246.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Riemerella anatipestifer RA-CH-2]
Length = 288
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 158/245 (64%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++ + E++I++ VVS++ YQ +GLSL DLI EG++GL++ AKR++ RG+K
Sbjct: 42 KIRAGDKVALEKLIKANLRFVVSVSKQYQNQGLSLPDLINEGNLGLMKAAKRYDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI +A L + R P+ E+AE+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKAYAHLEQENERPPSPEELAEV 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ ++ +++ + +S+D + + + D++ + P++ + + ++ E++
Sbjct: 162 LDMSEEDIKESMKNSGRHLSMDAPLVEGEDSNLYDVLRSGESPSPDKELMLESLQIEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LQTL+ READ++RL+FGL+G+ P++ +EIG L+RER+RQI+ A+ +L+ +
Sbjct: 222 ALQTLTPREADLVRLYFGLNGKHPMTLEEIGETFDLTRERVRQIKEKAIKRLKHNSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKSYL 286
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 148/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ + LCK++ +I+S LV+SIA YQG G++L+DL+QEG GL+RGA++F+ +
Sbjct: 328 IHHGTLCKDK-----MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATK 382
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ ++++++SR IRLP M ++ EA L + P + EI
Sbjct: 383 GFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEI 442
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SLD + + ++I P+ E ++ K+ M+Q+
Sbjct: 443 AEATGLSMKRLMAVLLSPKPPRSLDRKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQD 502
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L ++L +L RE ++R FG++ + +EIG ++ +SRER+RQI A KL+
Sbjct: 503 LDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKR 562
Query: 371 LNNLKVYMV 379
N+L+ Y+V
Sbjct: 563 NNHLQQYLV 571
>gi|333996949|ref|YP_004529561.1| RNA polymerase sigma factor RpoD (Sigma-70) [Treponema primitia
ZAS-2]
gi|333741030|gb|AEF86520.1| RNA polymerase sigma factor RpoD (Sigma-70) [Treponema primitia
ZAS-2]
Length = 582
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/262 (36%), Positives = 150/262 (57%), Gaps = 8/262 (3%)
Query: 125 ELDYNLVKYKILCKE--------RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGS 176
E + ++ K++ KE +++++R+I++ LVVSI Y +GL DL+QEG+
Sbjct: 319 EFEASIEDIKLMAKEINRGQVMMKKAKDRLIKANLRLVVSITKRYTNRGLHFFDLVQEGN 378
Query: 177 IGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNV 236
IGL+R ++F +G+K STY WWI+QAI R I++++RTIR+P M + K+++ +
Sbjct: 379 IGLIRAVEKFEYRKGFKFSTYATWWIRQAITRCISDQARTIRVPVHMIEQINKVSQESKS 438
Query: 237 LSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDET 296
L + L R PTD EIAE L V+ R PISL+ V D + D I D
Sbjct: 439 LLQTLNREPTDEEIAESLGWTAQRVKSVKNVAREPISLETPVGDEEDSLLGDFIEDKDTE 498
Query: 297 MPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQ 356
P L+++++ E+L TL RE +IL++ FGLD ++ +E+G +++RERIRQ
Sbjct: 499 KPANQTVSTLLQEQIAEVLSTLPAREQEILKMRFGLDDGYSLTLEEVGLYFNITRERIRQ 558
Query: 357 IRGIALTKLQQTNILNNLKVYM 378
I AL +L+ LK Y+
Sbjct: 559 IEAKALRRLRHPRRSRKLKDYL 580
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 149/240 (62%), Gaps = 3/240 (1%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 81 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 140
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + M+ K+ + LS+ L R P+ +E+A + +
Sbjct: 141 WWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTPSVTELASFVELPEE 200
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + +++ G D +P V+ + +K +L++LL L
Sbjct: 201 EVKDLMCRARQPVSLEMKVGDGDDTELLELLAG-DGELPSDQVEGECLKGDLRDLLSQLP 259
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYMV 379
E + +LR+ +G+DG+ P+S I + + +SR+R R++ L L++ + L+ Y++
Sbjct: 260 ELQGKVLRMRYGMDGEEPMSLTGIAKSMKMSRDRTRRLEREGLEMLRRGD--EQLQAYVL 317
>gi|87307232|ref|ZP_01089377.1| transcription initiation factor sigma 70 [Blastopirellula marina
DSM 3645]
gi|87289972|gb|EAQ81861.1| transcription initiation factor sigma 70 [Blastopirellula marina
DSM 3645]
Length = 507
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 130/215 (60%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y+ +GLS DLIQEG+ GL+R +F +RGYK STY WWI+QAI RAIA+
Sbjct: 268 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEYQRGYKFSTYATWWIRQAITRAIAD 327
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIR+P M + K+ L + L R PT E+AE + + R+ ++ R+P+
Sbjct: 328 QSRTIRVPVHMIDTMGKVRAVTRDLLQELGRDPTAEEVAERAGLSIDDARVILKMNRNPL 387
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V D + + + P +Q +K L E+L+ L+ RE +I+RL +GL
Sbjct: 388 SLDQPVGDHDDSFFGEFLEDHRDEDPLYETHQQALKDRLCEVLEALNHREREIIRLRYGL 447
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ +E+G++ S++RER+RQI A+ KLQQ
Sbjct: 448 TDGYSYTLEEVGKIFSVTRERVRQIESKAVRKLQQ 482
>gi|72383143|ref|YP_292498.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002993|gb|AAZ58795.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 340
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 144/236 (61%), Gaps = 2/236 (0%)
Query: 132 KYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
K+KI +R +++R++ + LVVS+A YQ +GL L DL+QEG+IGL R +F+P G
Sbjct: 97 KHKIKMGKR-ARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAIGLERAVDKFDPAMG 155
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
YK STY YWWI+Q + RAI N +RTIRLP ++ ++K+ + LS R R P E+A
Sbjct: 156 YKFSTYAYWWIRQGMTRAIDNSARTIRLPIHISEKLSKMRRISRELSHRFGRQPNRLELA 215
Query: 252 EMLNIHVSTVRLAIERTRHPISLDG-AVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
+ I + + ++ SLD A + T+ ++IP P+ P + + + K+
Sbjct: 216 NAMGIEPQDLEDLVSQSAPCASLDAHARGEEDRSTLGELIPDPNSDEPMEGMDRSIQKEH 275
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
L L L+ERE I+RL FGLDG+ P++ EIGR +++SRER+RQ+ A+ KL+
Sbjct: 276 LGGWLSQLNEREQKIMRLRFGLDGEEPLTLAEIGRQINVSRERVRQLEAKAILKLR 331
>gi|408370883|ref|ZP_11168656.1| RpoD subfamily RNA polymerase sigma-70 subunit [Galbibacter sp.
ck-I2-15]
gi|407743651|gb|EKF55225.1| RpoD subfamily RNA polymerase sigma-70 subunit [Galbibacter sp.
ck-I2-15]
Length = 287
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 152/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R+P+ EIA+ L++ V+ V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTYAFLEQAHERVPSAEEIAKELDMSVNDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + + + D++ + P++ + + ++ E++ L+TL+ REA
Sbjct: 172 SMKNSGRHVSMDAPLVEGEDSNLYDVLRSGESPNPDKDLLHESLRTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|427734848|ref|YP_007054392.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
gi|427369889|gb|AFY53845.1| RNA polymerase, sigma subunit, RpsC/SigC [Rivularia sp. PCC 7116]
Length = 419
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 145/238 (60%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 179 QAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 238
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A L + +
Sbjct: 239 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAVELEMTPAQ 298
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L+ LL L+
Sbjct: 299 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDGVTPEEMLMRESLQRDLQNLLADLTT 357
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 358 RERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 415
>gi|227504950|ref|ZP_03934999.1| RNA polymerase major sigma subunit [Corynebacterium striatum ATCC
6940]
gi|227198459|gb|EEI78507.1| RNA polymerase major sigma subunit [Corynebacterium striatum ATCC
6940]
Length = 465
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 226 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 285
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ ++I
Sbjct: 286 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPIELAKEMDITEE 345
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 346 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLQDVLTTLS 405
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++RL FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 406 EREAGVVRLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 464
>gi|443329181|ref|ZP_21057769.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442791126|gb|ELS00625.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 417
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 146/237 (61%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YWW
Sbjct: 178 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYAYWW 237
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI +A +S+ R P +++ L++ + +
Sbjct: 238 IRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKGRTPCIEDLSLELDMTAAQI 297
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + D++ + PE + ++ ++++L+ LL L+ R
Sbjct: 298 REVLLRVPRSVSLEIKVGKEKDTELGDLLE-TESASPEETLMRESLQRDLQLLLSELTSR 356
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +++++ FG G+ P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 357 EREVIQMRFGFGGEKPFSLAEIGRCLELSRERVRQIEAKALQKLRQPRRRNLIRDYL 413
>gi|337748350|ref|YP_004642512.1| protein SigA [Paenibacillus mucilaginosus KNP414]
gi|379723267|ref|YP_005315398.1| protein SigA [Paenibacillus mucilaginosus 3016]
gi|386725990|ref|YP_006192316.1| protein SigA [Paenibacillus mucilaginosus K02]
gi|336299539|gb|AEI42642.1| SigA [Paenibacillus mucilaginosus KNP414]
gi|378571939|gb|AFC32249.1| SigA [Paenibacillus mucilaginosus 3016]
gi|384093115|gb|AFH64551.1| protein SigA [Paenibacillus mucilaginosus K02]
Length = 378
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 156/256 (60%), Gaps = 1/256 (0%)
Query: 123 NGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRG 182
+ E + +L K +I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++
Sbjct: 123 SAEDEVDLAK-RIELGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKA 181
Query: 183 AKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLR 242
++F+ +GYK STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L
Sbjct: 182 VEKFDHTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELG 241
Query: 243 RMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302
R PT EIA+ +++ VR ++ + P+SL+ + + + D I + P
Sbjct: 242 REPTPEEIAKEMDLSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAA 301
Query: 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362
+L+K++L+++L TL+ERE ++LRL FGLD + +E+G++ ++RERIRQI AL
Sbjct: 302 AYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKAL 361
Query: 363 TKLQQTNILNNLKVYM 378
KL+ + LK ++
Sbjct: 362 RKLRHPSRSKRLKDFL 377
>gi|308069922|ref|YP_003871527.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus polymyxa
E681]
gi|310643031|ref|YP_003947789.1| RNA polymerase sigma factor rpod [Paenibacillus polymyxa SC2]
gi|375309436|ref|ZP_09774717.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus sp.
Aloe-11]
gi|305859201|gb|ADM70989.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus polymyxa
E681]
gi|309247981|gb|ADO57548.1| RNA polymerase sigma factor rpoD [Paenibacillus polymyxa SC2]
gi|375078745|gb|EHS56972.1| RNA polymerase sigma factor rpoD (Sigma-A) [Paenibacillus sp.
Aloe-11]
gi|392303839|emb|CCI70202.1| RNA polymerase sigma factor rpoD [Paenibacillus polymyxa M1]
Length = 377
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ E+G+K STY
Sbjct: 137 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYEKGFKFSTYA 196
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT E+A + + V
Sbjct: 197 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEVAAEMELSV 256
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I + P +L+K++L+++L TL
Sbjct: 257 EKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTL 316
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 317 TEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
>gi|145224529|ref|YP_001135207.1| RNA polymerase sigma factor SigB [Mycobacterium gilvum PYR-GCK]
gi|145217015|gb|ABP46419.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
Length = 329
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 134/225 (59%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 103 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMAD 162
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A + + L R TD E+AE I V + +E +R P+
Sbjct: 163 QSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRDPV 222
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + D I + E V +L+ +++ +L TL ERE ++RL FGL
Sbjct: 223 SLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGL 282
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI + KL+ + + L+ Y
Sbjct: 283 DDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGDRADRLRSY 327
>gi|411118238|ref|ZP_11390619.1| RNA polymerase sigma factor, sigma-70 family [Oscillatoriales
cyanobacterium JSC-12]
gi|410711962|gb|EKQ69468.1| RNA polymerase sigma factor, sigma-70 family [Oscillatoriales
cyanobacterium JSC-12]
Length = 341
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 145/238 (60%), Gaps = 2/238 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ +++RS LVVSIA Y +G+ DLIQEG++GL+R A++F+ ERGYK STY YWW
Sbjct: 104 AKRKLVRSNLRLVVSIAKKYLNRGVPFLDLIQEGAMGLMRAAEKFDYERGYKFSTYAYWW 163
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA++SRT+RLP M + ++ +A +LS++L R PT EIA L++ +
Sbjct: 164 IRQGITRAIASQSRTVRLPVHMVEKLNQVRKARQMLSQKLGRKPTKQEIAAELDLDEDKL 223
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
++ ++ +SL V + +I D P + +L+ L +L+ LS+R
Sbjct: 224 EHVLDVSQGTLSLHAWVGREEDTELMQLIEDSDTIAPNECLDHKLLCDRLNSVLEHLSDR 283
Query: 322 EADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E DI++L FGL DGQ + EIG L LSRER+RQI+ A+ KL+ LK +M
Sbjct: 284 ERDIIKLRFGLTDGQH-YTLSEIGELYHLSRERVRQIQAKAMRKLRHPRRQALLKDWM 340
>gi|167758408|ref|ZP_02430535.1| hypothetical protein CLOSCI_00748 [Clostridium scindens ATCC 35704]
gi|336422453|ref|ZP_08602597.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
5_1_57FAA]
gi|167664305|gb|EDS08435.1| RNA polymerase sigma factor RpoD [Clostridium scindens ATCC 35704]
gi|336008379|gb|EGN38397.1| RNA polymerase sigma factor rpoD [Lachnospiraceae bacterium
5_1_57FAA]
Length = 371
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 131 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGFKFSTYA 190
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA L++ V
Sbjct: 191 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAQLDMPV 250
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P + L+K++L E+L TL
Sbjct: 251 ERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTL 310
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FG++ + +E+G+ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 311 TEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 370
>gi|357588815|ref|ZP_09127481.1| RNA polymerase sigma factor SigB [Corynebacterium nuruki S6-4]
Length = 421
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 148/247 (59%), Gaps = 1/247 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
K+L +E R ++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +GY
Sbjct: 175 KVLVREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGY 234
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + ++L R T+ E+A+
Sbjct: 235 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELAD 294
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I S + + ++++R P+SLD V + D I + T E V L +++
Sbjct: 295 ESGIDESKIEMLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSEATDAEAAVVASLRHSDVR 354
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TL ERE D++++ +GLD P + +IGR LSRER+RQI + KL++ +
Sbjct: 355 AVLDTLDEREQDVIKMRYGLDDGMPRTLDQIGRSFGLSRERVRQIEREVMAKLREGDRAA 414
Query: 373 NLKVYMV 379
L+ Y V
Sbjct: 415 RLREYAV 421
>gi|333997997|ref|YP_004530609.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-2]
gi|333739459|gb|AEF84949.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-2]
Length = 357
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 107/278 (38%), Positives = 161/278 (57%), Gaps = 21/278 (7%)
Query: 108 RRKKRTKESDFLDKEN--------GELDYNLVKYKILCKERESQERIIRSYRSLVVSIAT 159
R + RT E +LD+E LD +L+ YK R+I S LVVSIA
Sbjct: 88 RTQIRTLEDSYLDEEKDPPYKQERSRLDESLLLYK---------NRMINSNLRLVVSIAK 138
Query: 160 GYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRL 219
YQ +GLSL DLI EG+IGL+ +RF+ RG + STY WWI+QAII++IA+K R IR+
Sbjct: 139 NYQHRGLSLLDLIDEGNIGLIEAVERFDYTRGCRFSTYGTWWIRQAIIKSIADKGRVIRI 198
Query: 220 PGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT 279
P M + K L++ L R P++ E++E L + V V+ ++ ++ SLD V
Sbjct: 199 PIHMLNTIKKCYFVAKQLTQDLGRDPSEEELSEYLGVPVGKVKEIVKLSQETTSLDTIVD 258
Query: 280 DRGCMTMQDIIPGPDETM--PERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTP 337
D + D+I D+TM P +V +++ + ++L LSERE I++L FGL G+ P
Sbjct: 259 DGNLTRLADLI--KDDTMEEPFEIVFSMTLQETMGDILTHLSEREMKIIQLRFGLAGEGP 316
Query: 338 VSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLK 375
++ +E G+LL ++RER+RQI+ A KL+ L+ L+
Sbjct: 317 LTLEETGKLLGITRERVRQIQEKATFKLRNLKQLHELR 354
>gi|308232215|ref|ZP_07415319.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308373480|ref|ZP_07667590.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
gi|308214639|gb|EFO74038.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308337452|gb|EFP26303.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
Length = 413
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 169 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 228
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 229 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 288
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 289 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 348
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 349 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 407
Query: 374 LKVYM 378
L+ Y+
Sbjct: 408 LRDYL 412
>gi|218962087|ref|YP_001741862.1| RNA polymerase sigma factor [Candidatus Cloacamonas
acidaminovorans]
gi|167730744|emb|CAO81656.1| RNA polymerase sigma factor [Candidatus Cloacamonas acidaminovorans
str. Evry]
Length = 579
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 144/231 (62%), Gaps = 2/231 (0%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
KER +Q +I + LV+SIA Y +GL DLIQEG+ GL+R ++++ +GYK STY
Sbjct: 333 KER-AQNEMIEANVRLVISIAKHYNNRGLEFLDLIQEGNTGLMRAVEKYDYRKGYKFSTY 391
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
WWI+QAI RAIA+++RTIR+P M + KI + L ++L R P EI+E+L+I
Sbjct: 392 ATWWIRQAITRAIADQARTIRIPVHMIESINKINRTSRRLMQKLGREPYPEEISEVLDIP 451
Query: 258 VSTVRLAIERTRHPISLDGAV-TDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQ 316
V ++ + ++ P+SLD + D + D I PER+ ++ L+K+++ E+L+
Sbjct: 452 VEKIKNIMSISKEPVSLDKPIGHDSEDSILGDFIEDRTIISPERLAERSLLKKQVDEVLK 511
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
TL+ RE ++RL FG+D + +E+G + ++RERIRQI AL KL+
Sbjct: 512 TLTPREERVIRLRFGIDDGYHRTLEEVGNIFQVTRERIRQIEDKALKKLRH 562
>gi|121534199|ref|ZP_01666024.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermosinus
carboxydivorans Nor1]
gi|121307302|gb|EAX48219.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermosinus
carboxydivorans Nor1]
Length = 368
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 144/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 128 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYA 187
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + R PT EIA ++I V
Sbjct: 188 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEKGREPTPEEIAREMDISV 247
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P L+K++L+E+L+TL
Sbjct: 248 ERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFMLLKEQLEEVLETL 307
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 308 TPREEKVLRLRFGLDDGRARTLEEVGQYFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 367
>gi|390453096|ref|ZP_10238624.1| RNA polymerase sigma factor rpod [Paenibacillus peoriae KCTC 3763]
Length = 377
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ E+G+K STY
Sbjct: 137 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYEKGFKFSTYA 196
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT E+A + + V
Sbjct: 197 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEVAAEMELSV 256
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I + P +L+K++L+++L TL
Sbjct: 257 EKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTL 316
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 317 TEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 376
>gi|329766845|ref|ZP_08258374.1| hypothetical protein HMPREF0428_00071 [Gemella haemolysans M341]
gi|328838571|gb|EGF88177.1| hypothetical protein HMPREF0428_00071 [Gemella haemolysans M341]
Length = 361
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 143/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI RAIA+
Sbjct: 135 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYSKGFKFSTYATWWIRQAITRAIAD 194
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + ++ L + L R P EIA+ +N+ VR ++ + P+
Sbjct: 195 QARTIRIPVHMVETINRLIRIQRQLLQDLGREPKPEEIAKKMNMTPEKVREILKIAQEPV 254
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I D P +L+K++L+E+L+TL++RE ++L+L FGL
Sbjct: 255 SLETPIGEEDDSHLGDFIEDKDAQSPVEHAANELLKEQLEEILETLTDREENVLKLRFGL 314
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DG+T + +E+G ++RERIRQI A+ KL+ + LN LK +M
Sbjct: 315 KDGKTH-TLEEVGSAFGVTRERIRQIEAKAIRKLKHPSKLNKLKGFM 360
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ + + + +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 84 QTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 143
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA + RTIRLP + + KI + L+++L R PT +EIA+
Sbjct: 144 FSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQKLGRSPTPAEIAKE 203
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L + + +R + R P+SLD V D +Q+++ D PE ++ ++Q+L
Sbjct: 204 LELEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLED-DGPSPEYYTTQEFLRQDLNT 262
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL L+ ++ +++ L FGL+ +S ++G L+LSRER+RQ+ AL L++ N
Sbjct: 263 LLAELTPQQREVVALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRRRRA--N 320
Query: 374 LKVYM 378
+K Y+
Sbjct: 321 VKEYV 325
>gi|395216299|ref|ZP_10401275.1| RNA polymerase sigma-70 factor [Pontibacter sp. BAB1700]
gi|394455451|gb|EJF09921.1| RNA polymerase sigma-70 factor [Pontibacter sp. BAB1700]
Length = 287
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 151/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GLSL DLI EG++GL++ AKRF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLSLGDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI+++ + L ++ R P+ EIAE+L + + V
Sbjct: 112 QSILQALAEQSRIVRLPLNRVGSLNKISKSFSELEQKFEREPSPEEIAEVLELTTAEVVD 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
++ + +S+D + D++ DE P+ + +++E++ L TL++REA
Sbjct: 172 TLKISGRHVSVDAPFVQGEENRLLDVLENEDEESPDTGLMNDSLRKEVQRALSTLTKREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++ L+FGL+G+ ++ +EIG +L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVITLYFGLNGEHSLTLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKALKPYL 286
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 142/226 (62%), Gaps = 1/226 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R++ + LVVSIA Y + L L DLIQEG+IG+ RG ++F+P +GY+ STY YWW
Sbjct: 83 AKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWW 142
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA KSR IRLP + + KI + LS R T +E+AE L + V
Sbjct: 143 IRQAITRAIAEKSRAIRLPLHITEKLNKIRQTQRKLSEEKGRPATIAELAEALELSTEQV 202
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + R P+SLD V D + +++ ++ PE ++ +LK+++ L+++
Sbjct: 203 REYLGKARQPLSLDLKVGDNNDTELGELLEDKGQS-PEDFTDYSCLQFDLKKMMSELTQQ 261
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ D++RL +GL+ P++ +IG +LS+SRER+RQI ALTKL++
Sbjct: 262 QQDVIRLRYGLEDGKPLTLSKIGDILSISRERVRQIEREALTKLRK 307
>gi|291533682|emb|CBL06795.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Megamonas hypermegale
ART12/1]
Length = 329
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 141/227 (62%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+Q+R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY W
Sbjct: 97 EAQKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYNKGYKFSTYATW 156
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ + L + L R P+ EIA+ +++ V
Sbjct: 157 WIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQSLGREPSPEEIAKEMDVSVDR 216
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I D P L+K++L+++L TL+E
Sbjct: 217 VREIMKIAQEPVSLETPIGEEEDSHLGDFIEDHDAPAPAEAASFVLLKEQLEDVLDTLTE 276
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
RE +LRL FGLD + +E+G+ ++RERIRQI AL KL+
Sbjct: 277 REEKVLRLRFGLDDGRARTLEEVGQNFGVTRERIRQIEAKALRKLRH 323
>gi|68536171|ref|YP_250876.1| RNA polymerase sigma factor SigB [Corynebacterium jeikeium K411]
gi|260578869|ref|ZP_05846775.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
gi|68263770|emb|CAI37258.1| RNA polymerase sigma factor B [Corynebacterium jeikeium K411]
gi|258603016|gb|EEW16287.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
Length = 343
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 149/247 (60%), Gaps = 1/247 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
K+L +E + ++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+
Sbjct: 97 KVLAREGKAARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGF 156
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + ++L R T+ E++E
Sbjct: 157 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELSE 216
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I S + + ++++R P+SLD V + D I D T E V L +++
Sbjct: 217 ESGIEESKIEMLLKQSRDPVSLDMPVGSDEEAPLGDFIEDSDATDAETAVVASLRHSDVR 276
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TL ERE D+++L +GLD P + +IGR LSRER+RQI + KL++ + +
Sbjct: 277 AVLGTLEEREQDVIKLRYGLDDGMPRTLDQIGRRFGLSRERVRQIEREVMAKLREGDRAD 336
Query: 373 NLKVYMV 379
L+ Y V
Sbjct: 337 KLREYAV 343
>gi|423585227|ref|ZP_17561314.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD045]
gi|401233870|gb|EJR40356.1| RNA polymerase sigma factor rpoD [Bacillus cereus VD045]
Length = 375
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ A++F+ +G+K STY
Sbjct: 135 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAAEKFDYRKGFKFSTYA 194
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 195 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAP 254
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I + T P +L+K++L+++L TL
Sbjct: 255 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTL 314
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 315 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 374
>gi|407796193|ref|ZP_11143149.1| RNA polymerase sigma factor RpoD [Salimicrobium sp. MJ3]
gi|407019547|gb|EKE32263.1| RNA polymerase sigma factor RpoD [Salimicrobium sp. MJ3]
Length = 375
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 139/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI RAIA+
Sbjct: 149 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIAD 208
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + R PT EIAE + + VR ++ + P+
Sbjct: 209 QARTIRIPVHMVETINKLIRVQRQLLQDFGREPTPEEIAEEMELTPDKVREILKIAQEPV 268
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I + T P +L+K++L+++L TL++RE ++LRL FGL
Sbjct: 269 SLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGL 328
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 329 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 374
>gi|6463986|dbj|BAA86958.1| group 2 sigma factor RpoD4 [Synechococcus sp. PCC 7942]
Length = 311
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 148/245 (60%), Gaps = 1/245 (0%)
Query: 122 ENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLR 181
EN + + N +L + ++ +++++ LVVS+A Q +GL L DLIQEGS+GL R
Sbjct: 54 ENPDAESNSENQAVLQAGQRAKTKMLKANLRLVVSVAKKCQNQGLELLDLIQEGSLGLER 113
Query: 182 GAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRL 241
++F+P GYK STY YWWI+Q++ RAI N +RTIRLP ++ +++I + L+ +L
Sbjct: 114 AVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQL 173
Query: 242 RRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDG-AVTDRGCMTMQDIIPGPDETMPER 300
+R+P+ +EIAE L + + V + + ++ SLD A D G + D+IP P P
Sbjct: 174 KRLPSRAEIAEALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMD 233
Query: 301 MVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360
+ + + +++ L L+ERE +L+L FGL + EIGR L++SRERIRQ+
Sbjct: 234 AMDRHIQHEQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEAR 293
Query: 361 ALTKL 365
AL KL
Sbjct: 294 ALQKL 298
>gi|325971191|ref|YP_004247382.1| RpoD subfamily RNA polymerase sigma-70 subunit [Sphaerochaeta
globus str. Buddy]
gi|324026429|gb|ADY13188.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerochaeta
globus str. Buddy]
Length = 685
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 143/239 (59%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+++++R+IR+ LVVSIA Y +GL DL+QEG+IGL++ ++F +G+K STY
Sbjct: 447 KDAKDRLIRANLRLVVSIAKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGFKFSTYAT 506
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI R+I++++RTIR+P M + K+ + +L + L R PTD E+AE L S
Sbjct: 507 WWIRQAITRSISDQARTIRVPVHMIEQINKVVRESRMLMQSLGREPTDEEVAEKLGWTES 566
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ R PISL+ V + + D I + P L++++LK++L TL
Sbjct: 567 KVKAVKNVAREPISLETPVGEEEDSLLSDFIEDKEVENPATQTAYSLLQEQLKDVLATLP 626
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE ++L++ FGL+ ++ +E+G L+RERIRQI AL +L+ LK ++
Sbjct: 627 AREQEVLKMRFGLEDGYSLTLEEVGLYFELTRERIRQIEAKALRRLRHPKRSRKLKDFI 685
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 141/236 (59%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
S++++I + +VV IA YQG+GL+L+DL+QEGS+GL+ ++F P G + ++Y YWW
Sbjct: 332 SRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWW 391
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QA+ +AI SRTIRLP +M ++ K+ EA + + PT EIAE + I + +
Sbjct: 392 IRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKL 451
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ + TR P+S+ V T Q++ +P+ V KQLM+Q ++ LL L+ +
Sbjct: 452 QRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPK 511
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
E I+RL FG+ P + EIG + S+ER+RQ+ AL KL+Q + L+ Y
Sbjct: 512 ERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESY 567
>gi|295101750|emb|CBK99295.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Faecalibacterium
prausnitzii L2-6]
Length = 359
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 88/226 (38%), Positives = 141/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+GL DLIQEG++GL++ A++F P+RG+K STY WWI+Q+I RAIA+
Sbjct: 132 LVVSVAKRYAGRGLPFLDLIQEGNLGLMKAAEKFEPDRGFKFSTYATWWIRQSITRAIAD 191
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+ RTIR+P + + ++ + L RR R PT EIA L++ + VR I+ + PI
Sbjct: 192 QGRTIRIPVHLVESINRVKKTAGELLRRTGREPTAEEIAAQLDMEPARVRELIQLAQDPI 251
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ V + ++D I + +P +QL+++EL +L++L+ RE ++ L FGL
Sbjct: 252 SLETPVGEEEDAHLEDFIQDDEAGVPADEAGRQLLRRELMNVLKSLTPREERVIALRFGL 311
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ + +E+GR +++RER+RQI AL KL+ + L+ Y+
Sbjct: 312 EDGRARTLEELGREFNVTRERVRQIEAKALRKLRHPSRAKRLRDYL 357
>gi|54025745|ref|YP_119987.1| RNA polymerase sigma factor SigB [Nocardia farcinica IFM 10152]
gi|54017253|dbj|BAD58623.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 322
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 135/225 (60%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 96 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMAD 155
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A L ++L R TD E+A I V + ++ +R P+
Sbjct: 156 QSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDEELAAESGIPVEKIADLLDHSRDPV 215
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + + D I + T E V L+ +++ +L TL ERE ++RL FGL
Sbjct: 216 SLDMPVGNDEEAPLGDFIEDSEATSAESAVIAGLLHHDVRSVLATLDEREQQVIRLRFGL 275
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI + KL++ + L+ Y
Sbjct: 276 DDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRKGERADRLRAY 320
>gi|375293289|ref|YP_005127828.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|376254504|ref|YP_005142963.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
gi|371582960|gb|AEX46626.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae INCA
402]
gi|372117588|gb|AEX70058.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae PW8]
Length = 329
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 146/245 (59%), Gaps = 1/245 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
K+L KE R+++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+
Sbjct: 83 KVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGF 142
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + ++L R T+ E+AE
Sbjct: 143 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELAE 202
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I S + + + ++R P+SLD V + D I + T E V L +++
Sbjct: 203 ESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHSDIR 262
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TL +RE D++RL +GLD P + +IGR LSRER+RQI ++KL+
Sbjct: 263 TVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDGARAE 322
Query: 373 NLKVY 377
L+ Y
Sbjct: 323 KLRAY 327
>gi|383823563|ref|ZP_09978753.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
gi|383338842|gb|EID17201.1| RNA polymerase sigma factor SigB [Mycobacterium xenopi RIVM700367]
Length = 319
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 133/225 (59%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 93 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMAD 152
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A L + L R TD E+AE I + + +E +R P+
Sbjct: 153 QSRTIRLPVHLVEQVNKLARIKRELHQNLGREATDEELAEESGIPIDKINDLLEHSRDPV 212
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + D I + E V +L+ +++ +L TL ERE ++RL FGL
Sbjct: 213 SLDMPVGSDEEAPLGDFIEDAEAASAENTVIAELLHTDIRSVLATLDEREQQVVRLRFGL 272
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI + KL+ + L+ Y
Sbjct: 273 DDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRHGERADRLRSY 317
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 89/236 (37%), Positives = 141/236 (59%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
S++++I + +VV IA YQG+GL+L+DL+QEGS+GL+ ++F P G + ++Y YWW
Sbjct: 321 SRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWW 380
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QA+ +AI SRTIRLP +M ++ K+ EA + + PT EIAE + I + +
Sbjct: 381 IRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKL 440
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ + TR P+S+ V T Q++ +P+ V KQLM+Q ++ LL L+ +
Sbjct: 441 QRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPK 500
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
E I+RL FG+ P + EIG + S+ER+RQ+ AL KL+Q + L+ Y
Sbjct: 501 ERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESY 556
>gi|332667453|ref|YP_004450241.1| RpoD subfamily RNA polymerase sigma-70 subunit [Haliscomenobacter
hydrossis DSM 1100]
gi|332336267|gb|AEE53368.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Haliscomenobacter
hydrossis DSM 1100]
Length = 288
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 149/235 (63%), Gaps = 1/235 (0%)
Query: 145 RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204
++ R+ VVS+A YQ +GLSL DLI EG++GL++ AKRF+ +G+K +Y WWI+Q
Sbjct: 53 KLTRANLRFVVSVAKQYQNQGLSLSDLINEGNVGLMKAAKRFDETKGFKFISYAVWWIRQ 112
Query: 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLA 264
+I++AI SR +RLP + G K+ EA ++ R P++ E+ E+L ++ V
Sbjct: 113 SILQAIVEYSRIVRLPLNKVGSYNKVNEAYLAFIQQFEREPSNEELGELLEMNPREVGNM 172
Query: 265 IERTRHPISLDGAVT-DRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
++ +S+D ++ + G TM D+I D+ P+ + +Q +K E+K+ L L+ RE
Sbjct: 173 LKGNGRHVSVDAPLSGEEGDSTMLDVITDEDDMGPDFRLMEQSLKDEVKQGLSILNIREV 232
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++L ++GL+GQ P++ +EIG + L+RER+RQI+ A+ +L+++ NNL+ Y+
Sbjct: 233 EVLSAYYGLEGQKPLTLEEIGEMYGLTRERVRQIKERAIRRLRKSYNRNNLRSYL 287
>gi|148657222|ref|YP_001277427.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148569332|gb|ABQ91477.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 349
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 97/240 (40%), Positives = 148/240 (61%), Gaps = 2/240 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+E++ +I++ LVVSIA Y G+GLSL DLIQEG+IGL+R ++F+ +G + STY
Sbjct: 110 QEARRHLIQANLRLVVSIAKKYVGRGLSLLDLIQEGNIGLMRAVEKFDHRKGNRFSTYAT 169
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QA+ RAIA + RTIRLP M+ V ++ A + L++ L R PT EIA L
Sbjct: 170 WWIRQAVTRAIAEQGRTIRLPVHMSESVGQVKRAADRLAQVLERQPTPEEIATALGQPTE 229
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+ +E +R P+SL+ V + G T+ D + D P QL++++L L L+
Sbjct: 230 RIERVLEASRRPVSLEMPVGEDGEHTLGDFLQDSDLPTPVEAASHQLLRRDLAAALDRLN 289
Query: 320 EREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
ERE I+ L +GL DGQ + +E+GR+L ++RER RQI AL +L+ ++ +L+ Y+
Sbjct: 290 ERERRIIDLRYGLVDGQRR-TLEEVGRVLGMTRERARQIEAEALRRLRAPDVGLHLRDYL 348
>gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951553|gb|AEA25250.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 461
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 235 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 294
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 295 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 354
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 355 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGL 414
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 415 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 460
>gi|453073906|ref|ZP_21976704.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
gi|452765392|gb|EME23649.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
Length = 454
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 228 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 287
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 288 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 347
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 348 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGL 407
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 408 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 453
>gi|347537492|ref|YP_004844917.1| RNA polymerase sigma-70 factor RpoD [Flavobacterium branchiophilum
FL-15]
gi|345530650|emb|CCB70680.1| RNA polymerase sigma-70 factor RpoD [Flavobacterium branchiophilum
FL-15]
Length = 287
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 86/245 (35%), Positives = 157/245 (64%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++ + E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 KIKAGDQRALEKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + +L + R P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKMYALLEQSNERPPSAEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ V+ V+ +++ + +S+D + + + D++ + P+R + + ++ E++
Sbjct: 162 LDMTVNDVKESMKNSGRHLSMDAPLVEGEDSNLYDVLRSGESPNPDRDLIHESLRTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 SLETLTPREADVVRLYFGLSDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|406669482|ref|ZP_11076752.1| RNA polymerase sigma factor rpoD [Facklamia ignava CCUG 37419]
gi|405583178|gb|EKB57146.1| RNA polymerase sigma factor rpoD [Facklamia ignava CCUG 37419]
Length = 385
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 138/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+GLS DLIQEG++GL++ ++F+ +G+K STY WWI+QAI RAIA+
Sbjct: 159 LVVSIAKRYVGRGLSFLDLIQEGNMGLMKAVEKFDYHKGFKFSTYATWWIRQAITRAIAD 218
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R PT EI +++ VR ++ + P+
Sbjct: 219 QARTIRIPVHMVETINKLVRIQRTLLQELGREPTPEEIGAEMDLPAEKVREILKIAQEPV 278
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I PE L++++L+E+L TL++RE ++LRL FGL
Sbjct: 279 SLETPIGEEDDSHLGDFIEDEGALSPEAFTAGSLLREQLEEVLDTLTDREENVLRLRFGL 338
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +++G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 339 DDGNIRTLEQVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 384
>gi|225570457|ref|ZP_03779482.1| hypothetical protein CLOHYLEM_06558 [Clostridium hylemonae DSM
15053]
gi|225160654|gb|EEG73273.1| hypothetical protein CLOHYLEM_06558 [Clostridium hylemonae DSM
15053]
Length = 370
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 130 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGFKFSTYA 189
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA L++ V
Sbjct: 190 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPV 249
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P + L+K++L E+L TL
Sbjct: 250 ERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTL 309
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FG++ + +E+G+ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 310 TEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 369
>gi|213964575|ref|ZP_03392775.1| RNA polymerase sigma factor A [Corynebacterium amycolatum SK46]
gi|213952768|gb|EEB64150.1| RNA polymerase sigma factor A [Corynebacterium amycolatum SK46]
Length = 520
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 139/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 294 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 353
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 354 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITEEKVLEIQQYAREPI 413
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L ++L+TLSEREA ++RL FGL
Sbjct: 414 SLDQTIGDEGDSQLGDFIEDSEAVIAVDAVSFTLLQDQLGDVLETLSEREAGVVRLRFGL 473
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 474 TDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 519
>gi|324997280|ref|ZP_08118392.1| RNA polymerase sigma factor [Pseudonocardia sp. P1]
Length = 469
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 243 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 302
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 303 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 362
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 363 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGL 422
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 423 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 468
>gi|336325731|ref|YP_004605697.1| RNA polymerase sigma factor A [Corynebacterium resistens DSM 45100]
gi|336101713|gb|AEI09533.1| RNA polymerase sigma factor A [Corynebacterium resistens DSM 45100]
Length = 571
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 145/239 (60%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 332 RRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYVKGYKFSTYAT 391
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R P+ E+A ++I V
Sbjct: 392 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPSPEELAREMDITVD 451
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L TLS
Sbjct: 452 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLHTLS 511
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+REA +++L FGL P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 512 DREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 570
>gi|347531276|ref|YP_004838039.1| RpoD family RNA polymerase sigma factor [Roseburia hominis A2-183]
gi|345501424|gb|AEN96107.1| RpoD family RNA polymerase sigma factor [Roseburia hominis A2-183]
Length = 402
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 149/240 (62%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 162 DQEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 221
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA +N+ V
Sbjct: 222 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMNMPV 281
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P L+K++L+E+L TL
Sbjct: 282 ERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLEEVLGTL 341
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +L L FGL+ + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 342 TEREQKVLTLRFGLEDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 401
>gi|403668244|ref|ZP_10933520.1| RNA polymerase sigma factor RpoD [Kurthia sp. JC8E]
Length = 378
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 156/264 (59%), Gaps = 6/264 (2%)
Query: 121 KENGELDYNLVKYKILCKER------ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQE 174
KE G +D + +I ER E+++R+ + LVVSIA Y G+G+ DLIQE
Sbjct: 114 KEIGRVDLLSAEQEISLAERIEKGDDEARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQE 173
Query: 175 GSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEAN 234
G++GL++ ++F+ +G+K STY WWI+QAI RAIA+++RTIR+P M + K+
Sbjct: 174 GNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQ 233
Query: 235 NVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPD 294
L + L R PT EI E +++ VR ++ + P+SL+ + + + D I +
Sbjct: 234 RQLLQDLGREPTPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSE 293
Query: 295 ETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERI 354
P +L+K++L+++L TL++RE ++LRL FGLD + +E+G++ ++RERI
Sbjct: 294 AQSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 353
Query: 355 RQIRGIALTKLQQTNILNNLKVYM 378
RQI AL KL+ + LK ++
Sbjct: 354 RQIEAKALRKLRHPSRSKRLKDFL 377
>gi|38233998|ref|NP_939765.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae NCTC
13129]
gi|375291083|ref|YP_005125623.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|376243018|ref|YP_005133870.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|376245915|ref|YP_005136154.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|376248702|ref|YP_005140646.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|376251501|ref|YP_005138382.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|376257315|ref|YP_005145206.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|376287931|ref|YP_005160497.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|376290620|ref|YP_005162867.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|376293422|ref|YP_005165096.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|419860982|ref|ZP_14383622.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38605711|sp|P33118.2|RPSB_CORDI RecName: Full=RNA polymerase sigma factor SigB
gi|38200260|emb|CAE49944.1| RNA polymerase sigma factor [Corynebacterium diphtheriae]
gi|371580754|gb|AEX44421.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae 241]
gi|371585265|gb|AEX48930.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae BH8]
gi|372104016|gb|AEX67613.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae C7
(beta)]
gi|372106260|gb|AEX72322.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae CDCE
8392]
gi|372108545|gb|AEX74606.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC01]
gi|372110745|gb|AEX76805.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC02]
gi|372113005|gb|AEX79064.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC03]
gi|372115270|gb|AEX81328.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae HC04]
gi|372119832|gb|AEX83566.1| RNA polymerase sigma factor B [Corynebacterium diphtheriae VA01]
gi|387982666|gb|EIK56167.1| RNA polymerase sigma factor SigB [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 329
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 146/245 (59%), Gaps = 1/245 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
K+L KE R+++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+
Sbjct: 83 KVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGF 142
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + ++L R T+ E+AE
Sbjct: 143 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELAE 202
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I S + + + ++R P+SLD V + D I + T E V L +++
Sbjct: 203 ESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHSDIR 262
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TL +RE D++RL +GLD P + +IGR LSRER+RQI ++KL+
Sbjct: 263 TVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDGARAE 322
Query: 373 NLKVY 377
L+ Y
Sbjct: 323 KLRAY 327
>gi|392406805|ref|YP_006443413.1| sigma-70 family RNA polymerase sigma factor [Anaerobaculum mobile
DSM 13181]
gi|390619941|gb|AFM21088.1| RNA polymerase sigma factor, sigma-70 family [Anaerobaculum mobile
DSM 13181]
Length = 408
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ ++++++I + LVVSIA Y G+GLS DLIQEG++GL+R ++F+ +G+K STY
Sbjct: 168 DEDAKKKLIEANLRLVVSIAKKYIGRGLSFLDLIQEGNLGLIRAVEKFDYRKGFKFSTYA 227
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L ++L R PT EIA+ L +
Sbjct: 228 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLVQQLGREPTTEEIAQALGLPP 287
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
V + P+SL+ + + + D + + PE QL++++L+E+L L
Sbjct: 288 EKVEDIQRIAQEPVSLETPIGEEEDSQLGDFLEDKESPNPEEATAGQLLREQLEEMLDEL 347
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE ++LRL FGL+ + +E+G+ +++RERIRQI AL KL+ + L+ Y+
Sbjct: 348 TEREREVLRLRFGLEDGHAHTLEEVGKRFNVTRERIRQIEAKALRKLRHPSRSKRLRDYL 407
>gi|315444860|ref|YP_004077739.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium gilvum
Spyr1]
gi|315263163|gb|ADT99904.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 319
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 134/225 (59%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 93 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMAD 152
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A + + L R TD E+AE I V + +E +R P+
Sbjct: 153 QSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRDPV 212
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + D I + E V +L+ +++ +L TL ERE ++RL FGL
Sbjct: 213 SLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGL 272
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI + KL+ + + L+ Y
Sbjct: 273 DDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGDRADRLRSY 317
>gi|120434745|ref|YP_860432.1| RNA polymerase sigma-70 factor [Gramella forsetii KT0803]
gi|117576895|emb|CAL65364.1| RNA polymerase sigma-70 factor [Gramella forsetii KT0803]
Length = 287
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 151/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ AKRF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA+ L++ ++ V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQSHERPPSAEEIAKELDMTINDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + + + D++ + P++ + + ++ E++ L+TL+ REA
Sbjct: 172 SMKNSGRHVSMDAPLVEGEDSNLYDVLRSGESPNPDKELLHESLRTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|421860383|ref|ZP_16292514.1| DNA-directed RNA polymerase [Paenibacillus popilliae ATCC 14706]
gi|410830131|dbj|GAC42951.1| DNA-directed RNA polymerase [Paenibacillus popilliae ATCC 14706]
Length = 374
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 146/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY W
Sbjct: 136 EAKKRLTEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHSKGYKFSTYATW 195
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ + L + L R P EIA + + V
Sbjct: 196 WIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLLQELGREPAPEEIAAEMELSVEK 255
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I + P +L+K++L+++L TL+E
Sbjct: 256 VREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLEDVLDTLTE 315
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 316 REENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
>gi|152976724|ref|YP_001376241.1| RNA polymerase sigma factor RpoD [Bacillus cytotoxicus NVH 391-98]
gi|152025476|gb|ABS23246.1| RNA polymerase, sigma 70 subunit, RpoD family [Bacillus cytotoxicus
NVH 391-98]
Length = 373
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 133 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYA 192
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI E +++
Sbjct: 193 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGEEMDLAP 252
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I + T P +L+K++L+++L TL
Sbjct: 253 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTL 312
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 313 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
>gi|262038195|ref|ZP_06011589.1| RNA polymerase sigma factor RpoD [Leptotrichia goodfellowii F0264]
gi|261747776|gb|EEY35221.1| RNA polymerase sigma factor RpoD [Leptotrichia goodfellowii F0264]
Length = 393
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 150/243 (61%), Gaps = 3/243 (1%)
Query: 125 ELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
E+DY ++L + E+++++I S LVVSIA + +GL + DLIQEG++GL++ +
Sbjct: 142 EIDY---AQRVLKGDEEAKQKLIESNLRLVVSIAKKHTNRGLKMLDLIQEGNMGLMKAVE 198
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F E+G+K STY WWI+QAI RAIA++ RTIR+P M + KI + + ++ + +
Sbjct: 199 KFEYEKGFKFSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGKE 258
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT E+++ L I V V+ +E + PISL+ V + D + P +
Sbjct: 259 PTAEELSKKLEIPVDKVKNILEMNQDPISLETPVGSEEDSELGDFVEDDKFLNPYDATTR 318
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
L+K++L E+L+TL+ERE +LR +GLD + + +E+G++ +++RERIRQI AL K
Sbjct: 319 VLLKEQLDEILKTLNEREEMVLRYRYGLDDGSQKTLEEVGKIFNVTRERIRQIEVKALRK 378
Query: 365 LQQ 367
L+
Sbjct: 379 LRH 381
>gi|298209056|ref|YP_003717235.1| RNA polymerase sigma factor rpoD (Sigma-A) [Croceibacter atlanticus
HTCC2559]
gi|83848983|gb|EAP86852.1| RNA polymerase sigma factor rpoD (Sigma-A) [Croceibacter atlanticus
HTCC2559]
Length = 287
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 149/235 (63%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS++ YQ +GL+L DLI EG++GL++ AKRF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVSKQYQNQGLTLPDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + +R PT EIA+ L + +S V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKMYAYLEQSNQRPPTPEEIAQELEMTISEVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + D + D++ + PE+ + + ++ E+ L+TL+ REA
Sbjct: 172 SLKNSGRHLSMDAPLVDGEDSNLYDVLKFGESPNPEKDLLVESLQTEIDRALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL Q P++ +EIG L+RER+RQI+ A +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGQQQPLTLEEIGETFELTRERVRQIKEKATRRLKHTSRSKILKTYL 286
>gi|440682434|ref|YP_007157229.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
gi|428679553|gb|AFZ58319.1| RNA polymerase, sigma subunit, RpsC/SigC [Anabaena cylindrica PCC
7122]
Length = 416
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 147/245 (60%), Gaps = 1/245 (0%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + +++E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+
Sbjct: 169 KIQSQGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYR 228
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A
Sbjct: 229 FSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIE 288
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ + VR + R +SL+ V + +++ D PE M+ ++ ++++L
Sbjct: 289 LDMTPTQVREVLLRVPRSVSLETKVGKDKDTELGELLE-TDSVTPEEMLMRESLQKDLHN 347
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL L+ RE D++ + FGL S EIGR L LSRER+RQI AL KL+Q N
Sbjct: 348 LLDDLTSRERDVILMRFGLSDGHAYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNL 407
Query: 374 LKVYM 378
++ Y+
Sbjct: 408 IRDYL 412
>gi|229916320|ref|YP_002884966.1| RpoD subfamily RNA polymerase sigma-70 subunit [Exiguobacterium sp.
AT1b]
gi|229467749|gb|ACQ69521.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Exiguobacterium
sp. AT1b]
Length = 364
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 124 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYMKGFKFSTYA 183
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EIA+ + +
Sbjct: 184 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIAKEMELTP 243
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P+ +L+K++L+++L TL
Sbjct: 244 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDAMAPQDAAAYELLKEQLEDVLDTL 303
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 304 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 363
>gi|434405397|ref|YP_007148282.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
gi|428259652|gb|AFZ25602.1| RNA polymerase, sigma subunit, RpsC/SigC [Cylindrospermum stagnale
PCC 7417]
Length = 412
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 144/238 (60%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 172 QAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 231
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A L + +
Sbjct: 232 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELEMTPAQ 291
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L LL L+
Sbjct: 292 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDCVTPEEMLMRESLQRDLHNLLDDLTS 350
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 351 RERDVILMRFGLSDGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 408
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 151/244 (61%), Gaps = 1/244 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L K R ++ ++IRS LVVSIA Y +G+ DLIQEG+IGL R A++F+P +GYK S
Sbjct: 119 LYKGRVAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFS 178
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI R IAN SRTIRLP + + K+ +A L + L+R PT+ E+AE +
Sbjct: 179 TYAYWWIRQAITRTIANDSRTIRLPIHIVEKLNKLKKAQRELKQSLQRNPTEVELAEEMG 238
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I+ + ++ R +SL+ V + +++ + +PE + + +M QE+ +L
Sbjct: 239 INEQALHQLLQLKRQSLSLNHRVGKGEDTELLELLEDTNLLLPEEKMNEAMMHQEIVSVL 298
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
LSERE +++ L +GL P + +E+G++ LSRER+RQI+ A+ KL++ + L
Sbjct: 299 SDVLSEREKEVIILRYGLSSCKPHTLEEVGQIFDLSRERVRQIQTKAMRKLRRPQVARRL 358
Query: 375 KVYM 378
K ++
Sbjct: 359 KSWL 362
>gi|366089209|ref|ZP_09455682.1| RNA polymerase sigma factor RpoD [Lactobacillus acidipiscis KCTC
13900]
Length = 373
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 144/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
S++R+ + LVVSIA Y G+G+S DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 136 SKQRLAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWW 195
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI +++ V
Sbjct: 196 IRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPIPEEIGAEMDMPTEKV 255
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D I + T P +L+K++L+ +L TL++R
Sbjct: 256 REILKIAQEPVSLETPIGEEDDSHLGDFIEDAEATSPADHAAYELLKKQLESVLDTLTDR 315
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ + LK ++
Sbjct: 316 EENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 372
>gi|15613939|ref|NP_242242.1| RNA polymerase sigma factor RpoD [Bacillus halodurans C-125]
gi|12643264|sp|O66381.2|RPOD_BACHD RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-43; AltName: Full=Sigma-A
gi|10173992|dbj|BAB05095.1| RNA polymerase major sigma factor [Bacillus halodurans C-125]
Length = 372
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 127 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ E+AE
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVAEE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D P +L+K++L++
Sbjct: 247 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLED 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 366
Query: 374 LKVYM 378
LK ++
Sbjct: 367 LKDFL 371
>gi|294055548|ref|YP_003549206.1| RpoD subfamily RNA polymerase sigma-70 subunit [Coraliomargarita
akajimensis DSM 45221]
gi|293614881|gb|ADE55036.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Coraliomargarita
akajimensis DSM 45221]
Length = 342
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 142/226 (62%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++ +I + LVV IA Y GL L DLI EG+IGL++ +RF+P +G KLSTY WW
Sbjct: 79 ARDHMISANLRLVVKIAHDYNNFGLPLMDLISEGNIGLVKAVERFDPSKGGKLSTYAAWW 138
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
IKQ+I RA+AN+S+TIRLP + +A + + L+ L R PTD EIA + + V+ V
Sbjct: 139 IKQSIKRALANQSKTIRLPVHLVDKIAYMRKITAELADELDREPTDEEIAYTMGMPVNKV 198
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ P SLD V + G + +++ ++ P +Q++ + ++ ++ L +R
Sbjct: 199 AHLKSVSVRPSSLDAPVGEDGDTSFGELVGDENQATPLENLQEKSLSNDMHSMIALLDQR 258
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
EA+I+RL FGLDG+ P++ +E+G ++RER+RQI+ IA+ K+++
Sbjct: 259 EAEIIRLRFGLDGEHPLTLEEVGEQFKITRERVRQIQNIAIHKMRR 304
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 154/247 (62%), Gaps = 5/247 (2%)
Query: 133 YKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
++ + + ++E+++ + LVVS+A Y + L L DLIQEG+IG+ RG ++F+P +GY
Sbjct: 74 HRAIAAGKAAKEKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGY 133
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
+ STY YWWI+QAI RAIA KSRTIRLP + + KI +A LS+ R T SE+AE
Sbjct: 134 RFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQLSQAKGRAATISELAE 193
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
L + VR +ER R P+SLD V D + +++ T PE ++ +L+
Sbjct: 194 ELELTPRQVRDYLERARQPLSLDLKVGDNQDTELGELLEDTG-TSPEDYATHSSLQVDLE 252
Query: 313 ELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
+L+ L+ ++ ++L L FGL DGQ P++ +IG L++SRER+RQI AL+KL++
Sbjct: 253 KLMSDLTPQQKEVLALRFGLVDGQ-PLTLAKIGVRLNISRERVRQIEREALSKLRKRK-- 309
Query: 372 NNLKVYM 378
N+K Y+
Sbjct: 310 GNIKEYL 316
>gi|336171682|ref|YP_004578820.1| RpoD subfamily RNA polymerase sigma-70 subunit [Lacinutrix sp.
5H-3-7-4]
gi|334726254|gb|AEH00392.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Lacinutrix sp.
5H-3-7-4]
Length = 287
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 151/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA+ L++ ++ V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQAHERPPSAEEIAKELDMTINDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + + + D++ + P+R + + ++ E++ L+TL+ REA
Sbjct: 172 SMKNSGRHVSMDAPLVEGEDSNLYDVLNSGESPNPDRELLHESLRTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGNQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 151/241 (62%), Gaps = 1/241 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ ++IRS LVVSIA Y +GL DLIQEG++GL R ++F+P++GYK STY Y
Sbjct: 160 RVAKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAY 219
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIAN +RTIRLP + + K+ + L ++L+R P++ E+A L +
Sbjct: 220 WWIRQAITRAIANDARTIRLPIHIVEKLNKLKKYQRELKQKLQRNPSEIELAAALEVPPE 279
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL-QTL 318
+R + R +SL+ V + D++ D PE+ + + +M+QE+ ++L L
Sbjct: 280 QLRQLQQLRRKALSLNHRVGKEEDTELVDLLEDNDAQSPEQQMSETMMRQEIWDVLGDVL 339
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE D++ L +GL P + +E+G L +LSRER+RQI+ A+ KL++ +I LK ++
Sbjct: 340 TPREKDVISLRYGLTTSEPCTLEEVGCLFNLSRERVRQIQSKAMRKLRRPHIAKRLKGWL 399
Query: 379 V 379
+
Sbjct: 400 L 400
>gi|302386569|ref|YP_003822391.1| RpoD subfamily RNA polymerase sigma-70 subunit [Clostridium
saccharolyticum WM1]
gi|302197197|gb|ADL04768.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
saccharolyticum WM1]
Length = 401
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 147/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ++++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 155 KIELGDDDAKQRLTEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYRKGYK 214
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + ++ + L + L R P EIA
Sbjct: 215 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINRLVRVSRQLLQELGREPVPEEIAAR 274
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
++ V VR ++ ++ P+SL+ + + + D I +P ++ ++L E
Sbjct: 275 ADMQVDRVREIMKVSQEPVSLETPIGEEEDSHLGDFIQDEQVAVPADAATFTMLHEQLME 334
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL+ERE +L+L FGLD P + +E+G+ +++RERIRQI AL KL+ +
Sbjct: 335 VLDTLTEREQKVLKLRFGLDDGRPRTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKK 394
Query: 374 LKVYM 378
LK Y+
Sbjct: 395 LKDYL 399
>gi|239626722|ref|ZP_04669753.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516868|gb|EEQ56734.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 374
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 145/238 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++++R+ S LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY W
Sbjct: 135 DARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 194
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + ++ + L + L R PT EIA ++ V
Sbjct: 195 WIRQAITRAIADQARTIRIPVHMVETINRLVRTSRQLLQELGREPTTEEIAARADLPVER 254
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
V ++ + P+SL+ + + + D I + +P+ L+ ++L E+L TL+E
Sbjct: 255 VSEIMKMAQEPVSLETPIGEEEDSHLGDFIQDDNVMVPQDAAAFTLLHEQLMEVLLTLTE 314
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +L+L FGLD P + +E+GR +++RERIRQI AL KL+ + LK Y+
Sbjct: 315 REQKVLKLRFGLDDGRPRTLEEVGRQFNVTRERIRQIEAKALRKLRHPSRSKKLKDYL 372
>gi|383451548|ref|YP_005358269.1| RNA polymerase sigma-70 factor RpoD [Flavobacterium indicum
GPTSA100-9]
gi|380503170|emb|CCG54212.1| RNA polymerase sigma-70 factor RpoD [Flavobacterium indicum
GPTSA100-9]
Length = 287
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 157/245 (64%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I ++ + E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 RIKAGDQRALEKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + +L + R P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKMYALLEQSNERAPSAEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ V+ V+ +++ + +S+D + + + D++ + P+R + + ++ E++
Sbjct: 162 LDMTVNDVKESMKNSGRHLSMDAPLVEGEDSNLYDVLRSGESPNPDRELIHESLQTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ALETLTPREADVVRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|363899334|ref|ZP_09325843.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|395208255|ref|ZP_10397496.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
gi|361958374|gb|EHL11673.1| hypothetical protein HMPREF9625_00503 [Oribacterium sp. ACB1]
gi|394705836|gb|EJF13360.1| RNA polymerase sigma factor RpoD [Oribacterium sp. ACB8]
Length = 385
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 148/239 (61%), Gaps = 4/239 (1%)
Query: 132 KYKILCKERESQE----RIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFN 187
+Y + K++E E R+I + LVVSIA Y G+G+S DL+QEG++GL++G ++F+
Sbjct: 134 EYSLAMKKQEGDEYAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFD 193
Query: 188 PERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTD 247
PE+G+KLSTY WWI+Q++ RA+A+++RTIR+P M + K+++ L+ L P+
Sbjct: 194 PEKGFKLSTYATWWIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLTLELGYEPSV 253
Query: 248 SEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLM 307
E+AE L++ V+ ++ R P SL+ + + + D + + PE V+ ++
Sbjct: 254 KELAEHLDMTEEKVQEIMQIAREPASLETPIGEEDDSNLGDFVADANVLSPEGNVESVML 313
Query: 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
++ + LL L ERE ++ L FGL+ P + +E+GR +++RERIRQI AL KL+
Sbjct: 314 REHIDSLLDDLKERERQVIVLRFGLEDGHPRTLEEVGREFNVTRERIRQIEAKALRKLR 372
>gi|153853334|ref|ZP_01994743.1| hypothetical protein DORLON_00730 [Dorea longicatena DSM 13814]
gi|149754120|gb|EDM64051.1| RNA polymerase sigma factor RpoD [Dorea longicatena DSM 13814]
Length = 369
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 129 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGFKFSTYA 188
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA L++ V
Sbjct: 189 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPV 248
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P + L+K++L E+L TL
Sbjct: 249 ERVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTL 308
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FG++ + +E+G+ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 309 TEREQKVLRLRFGMNDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 368
>gi|323703334|ref|ZP_08114984.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfotomaculum
nigrificans DSM 574]
gi|333924029|ref|YP_004497609.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323531697|gb|EGB21586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfotomaculum
nigrificans DSM 574]
gi|333749590|gb|AEF94697.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 367
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 144/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 127 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 186
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA+ +NI
Sbjct: 187 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMNISG 246
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P L++++L E+L+TL
Sbjct: 247 DKVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDADARAPAEEASFTLLREQLDEVLKTL 306
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE +LRL FGLD + +E+G+ ++RERIRQI L KL+ + LK Y+
Sbjct: 307 TDREQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 366
>gi|269929031|ref|YP_003321352.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
gi|269788388|gb|ACZ40530.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sphaerobacter
thermophilus DSM 20745]
Length = 359
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 153/245 (62%), Gaps = 10/245 (4%)
Query: 133 YKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
++I+ + + ++E++IR LVVSIA Y+ GL L DLIQEG+IGL+ +R++PE GY
Sbjct: 115 HQIIERAKAAREKLIRHNLRLVVSIAKKYRTSGLPLIDLIQEGNIGLMTAVERYDPELGY 174
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
+ STY +WI+QAI RA+AN+SRTIR+P M +++K+ L + R TD E+A+
Sbjct: 175 RFSTYATFWIRQAIGRAVANQSRTIRVPVHMHDLISKVRRTEAQLEQLHGRPATDQELAQ 234
Query: 253 MLNIHVSTV---RLAIERTRHPISLDGAVTDRGCMTMQDIIPGP--DETMPERMVQKQLM 307
L++ V + R AI RT SLD + + G T+ D++P P DE + + + +
Sbjct: 235 ALDLDVERIEQARSAIPRTS---SLDKPIGEDGESTIGDLLPDPASDEVVDQAVTSA--I 289
Query: 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ +++ L++LSERE +L L FGL GQ P + EI +SRER+RQI AL KL+
Sbjct: 290 RDQIRRSLESLSERERGVLTLRFGLGGQQPQTLAEIAEYYGISRERVRQIEKEALAKLRN 349
Query: 368 TNILN 372
++++
Sbjct: 350 SDLIQ 354
>gi|336392901|ref|ZP_08574300.1| RNA polymerase sigma factor RpoD [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
Length = 365
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 143/234 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 126 KIEQGDGEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 185
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 186 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 245
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L+
Sbjct: 246 MDMPTDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLES 305
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+
Sbjct: 306 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRH 359
>gi|358445390|ref|ZP_09156000.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608836|emb|CCE54245.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 334
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 147/245 (60%), Gaps = 1/245 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
KIL KE ++++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+
Sbjct: 88 KILVKEGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 147
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + + L R T+ E+AE
Sbjct: 148 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATNEELAE 207
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I + + + + ++R P+SLD V + D I + T E V + +++
Sbjct: 208 ESGIEENKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDAEATDAETAVVASMRHSDIR 267
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
++++TL ERE D++RL +GLD P + +IGR LSRER+RQI + KL+ N
Sbjct: 268 DVIETLEEREQDVIRLRYGLDDGVPRTLDQIGRKFGLSRERVRQIEREVMAKLRDGNRAA 327
Query: 373 NLKVY 377
L+ Y
Sbjct: 328 RLREY 332
>gi|404420807|ref|ZP_11002540.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659675|gb|EJZ14305.1| RNA polymerase sigma factor SigB [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 319
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 133/225 (59%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 93 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMAD 152
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A + + L R TD E+AE I V + +E +R P+
Sbjct: 153 QSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRDPV 212
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + D I + E V +L+ +++ +L TL ERE ++RL FGL
Sbjct: 213 SLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRHVLATLDEREQQVIRLRFGL 272
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI + KL+ + L+ Y
Sbjct: 273 DDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
>gi|408489584|ref|YP_006865953.1| RNA polymerase sigma factor RpoD [Psychroflexus torquis ATCC
700755]
gi|408466859|gb|AFU67203.1| RNA polymerase sigma factor RpoD [Psychroflexus torquis ATCC
700755]
Length = 287
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 150/235 (63%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS++ YQ +GL+L DLI EG++GL++ AKRF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVSKQYQNQGLTLPDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I+ A+A +SR +RLP + G + KI + +L +R +R P+ EIA+ L + V+ V+
Sbjct: 112 QSILSALAEQSRVVRLPLNKIGSINKINKTFAILEQRHQRPPSPDEIAKELEMTVNDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + + + D++ + PE + + ++ E++ L+TL+ REA
Sbjct: 172 SLKNSGRHLSMDAPLIEGEDSNLYDVLKFGESPNPENDLLHESLQTEIERALETLTTREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL Q P++ +EIG L+RER+RQI+ + +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGNQQPMTLEEIGETFGLTRERVRQIKEKGVRRLKHTSRSTILKTYL 286
>gi|87123422|ref|ZP_01079273.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
gi|86169142|gb|EAQ70398.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9917]
Length = 376
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 143/228 (62%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++R+I + LVV++A YQ +GL L DL+QEG++GL R ++F+P RG++ STY Y
Sbjct: 134 RRARDRMIAANLRLVVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAY 193
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA +SRTIRLP + + +I ++ + R+ T +++A+ L +
Sbjct: 194 WWIRQGITRAIATQSRTIRLPVHVTEKLNRIKRVQQEIASQEGRIATLTDLAQKLGLSEE 253
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
TVRL + R +SL+ V + D++ T PE+ + + + +L+ LL L+
Sbjct: 254 TVRLTLMRVPRSVSLELRVGKEQDTQLGDLLEDGKAT-PEQELTRDALHHDLEHLLDELT 312
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+REA ++RL FGLD TP + +IG ++LSRER+RQI AL KL+Q
Sbjct: 313 DREAAVIRLRFGLDNDTPCTLAQIGETMALSRERVRQIETRALLKLRQ 360
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 140/232 (60%), Gaps = 1/232 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK S
Sbjct: 83 LINGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFS 142
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+Q I RAIA KSRTIRLP + + K+ + LS+ L R PT E+AE L
Sbjct: 143 TYAYWWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVGELAEFLE 202
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ V+ + R R P+SL+ V D + +++ D MP +V +K +++ LL
Sbjct: 203 LPEPEVKDLLSRARQPVSLEMKVGDSDDTELCELLQN-DAPMPHELVDGDCLKGDMRSLL 261
Query: 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ L + +L++ +G+D + P+S IGR L +SR+R+R + L L++
Sbjct: 262 EQLPPLQGRVLKMRYGIDVEEPMSLTGIGRELGMSRDRVRNLERDGLAGLRR 313
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 151/247 (61%), Gaps = 7/247 (2%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ + + + +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 109 QTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYK 168
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA + RTIRLP + + KI + L++ L R P+ +EIA+
Sbjct: 169 FSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPSPAEIAKE 228
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDII--PGPDETMPERMVQKQLMKQEL 311
L + + +R + R P+SLD V D +Q+++ GP PE ++ ++Q+L
Sbjct: 229 LELEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLEDEGPS---PEYYTTQEFLRQDL 285
Query: 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
LL L+ ++ ++L L FGL+ +S ++G L+LSRER+RQ+ AL L++
Sbjct: 286 NTLLAELTPQQREVLALRFGLEDGNEMSLAKVGERLNLSRERVRQLEHQALAHLRRRRA- 344
Query: 372 NNLKVYM 378
N+K Y+
Sbjct: 345 -NVKEYV 350
>gi|111023771|ref|YP_706743.1| RNA polymerase sigma factor SigB [Rhodococcus jostii RHA1]
gi|384100772|ref|ZP_10001829.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|397737305|ref|ZP_10503977.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|419965923|ref|ZP_14481858.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|432340395|ref|ZP_19589837.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
gi|110823301|gb|ABG98585.1| sigma factor, sigma 70 type, group 2 (proven non-essential)
[Rhodococcus jostii RHA1]
gi|383841678|gb|EID80955.1| RNA polymerase sigma factor SigB [Rhodococcus imtechensis RKJ300]
gi|396926744|gb|EJI93981.1| RNA polymerase principal sigma factor hrdA [Rhodococcus sp. JVH1]
gi|414568597|gb|EKT79355.1| RNA polymerase sigma factor SigB [Rhodococcus opacus M213]
gi|430774588|gb|ELB90174.1| RNA polymerase sigma factor SigB [Rhodococcus wratislaviensis IFP
2016]
Length = 323
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 135/225 (60%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 97 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMAD 156
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A L ++L R TD E+AE I + ++ +R P+
Sbjct: 157 QSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELAEESGIPAHKIADLLDHSRDPV 216
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + + D I + T E V L+ +++ +L TL ERE ++RL +GL
Sbjct: 217 SLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLHSDVRSVLATLDEREQQVIRLRYGL 276
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI + KL+Q + L+ Y
Sbjct: 277 DDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDRAERLRSY 321
>gi|427718372|ref|YP_007066366.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
gi|427350808|gb|AFY33532.1| RNA polymerase, sigma subunit, RpsC/SigC [Calothrix sp. PCC 7507]
Length = 416
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 145/238 (60%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 176 QAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 235
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A L + +
Sbjct: 236 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAVELEMTPTQ 295
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L+ LL L+
Sbjct: 296 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDCVTPEEMLMRESLQRDLQHLLADLTS 354
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 355 RERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 412
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 144/233 (61%), Gaps = 6/233 (2%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++ + LVVS+A Y + + L DLIQEG+IGL+RG ++F+P RGYK STY Y
Sbjct: 77 RRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAY 136
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q I RAIA KSRTIRLP + + K+ + LS+ L R PT +E+A + +
Sbjct: 137 WWIRQGITRAIAEKSRTIRLPIHITETLNKLKKGQRELSQELGRTPTVTELAGYVELPEE 196
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V+ + R R P+SL+ V D + D++ G D +PE V + +K +L+ LL+ L
Sbjct: 197 EVKDLLCRARQPVSLETKVGDGEDTELLDLLAG-DGELPEERVDGECLKGDLRALLEQLP 255
Query: 320 EREADILRLHFGLDGQT-----PVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
E + +L++ +G+D Q+ P+S IGR+L +SR+R+R + L L++
Sbjct: 256 ELQGRVLKMRYGIDPQSAEMAEPMSLTGIGRILGISRDRVRNLERDGLAGLRR 308
>gi|406996156|gb|EKE14619.1| hypothetical protein ACD_12C00386G0002, partial [uncultured
bacterium]
Length = 377
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 146/241 (60%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
K+ +++ER+I+S LVVSIA Y G+ LS DLIQEG+ GL++G ++++ RGYK STY
Sbjct: 136 KDLKARERLIKSNLRLVVSIAKKYLGRRLSFLDLIQEGNQGLIKGVEKYDWRRGYKFSTY 195
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
WWI+QAI RAIA++SRTIR+P M + + + L+++ P++ EIA+ LNI
Sbjct: 196 ATWWIRQAITRAIADQSRTIRIPVHMVDHINRYYKIQRRLTQKFGHEPSNKEIAKELNIT 255
Query: 258 VSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQT 317
+ V I+ ++HP SL + D T+++ I ++ V K+ +K L ++L T
Sbjct: 256 IKEVENLIKISQHPKSLSTPIGDDKETTLEEFISDQNKPTLYDKVLKEFLKGYLNDVLDT 315
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
LSERE +L + FGLD + + +G ++RERIRQI A+ KL+ L+ +
Sbjct: 316 LSEREKKVLIMRFGLDDGKTKTLEAVGHEFKVTRERIRQIEAKAIRKLRHPTRAKKLREF 375
Query: 378 M 378
+
Sbjct: 376 L 376
>gi|389815818|ref|ZP_10207066.1| RNA polymerase sigma factor RpoD [Planococcus antarcticus DSM
14505]
gi|388465541|gb|EIM07857.1| RNA polymerase sigma factor RpoD [Planococcus antarcticus DSM
14505]
Length = 384
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 144 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYSKGFKFSTYA 203
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 204 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLLP 263
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P +L+K++L+++L TL
Sbjct: 264 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSDAQSPSDHAAYELLKEQLEDVLDTL 323
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 324 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 383
>gi|269121540|ref|YP_003309717.1| RpoD subfamily RNA polymerase sigma-70 subunit [Sebaldella
termitidis ATCC 33386]
gi|268615418|gb|ACZ09786.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Sebaldella
termitidis ATCC 33386]
Length = 387
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 149/244 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K+L + E+++++I S LVVSIA + +GL + DLIQEG++GL++ ++F E+G+K
Sbjct: 142 KVLENDEEAKQKLIESNLRLVVSIAKKHTNRGLKMLDLIQEGNMGLMKAVEKFEYEKGFK 201
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA++ RTIR+P M + KI + + ++ + + T E+A+
Sbjct: 202 FSTYATWWIRQAITRAIADQGRTIRIPVHMIETINKIKKESRIILQETGKEATAEELAKK 261
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L I V V+ +E + PISL+ V + D + P + L+K++L
Sbjct: 262 LEIPVDKVKSILEMNQDPISLETPVGSEEDSELGDFVEDDKFLNPYDATTRVLLKEQLDG 321
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L+TLSERE +LR +GLD +P + +E+G++ +++RERIRQI AL KL+ +
Sbjct: 322 VLKTLSEREEMVLRYRYGLDDGSPKTLEEVGKIFNVTRERIRQIEVKALRKLRHPSRRKK 381
Query: 374 LKVY 377
L+ Y
Sbjct: 382 LEDY 385
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 153/239 (64%), Gaps = 5/239 (2%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ ++I + LVV+IA YQ + + DLIQEGS+GL RG ++F+P +GYK STY YWW
Sbjct: 92 AKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWW 151
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA ++RTIRLP + + KI + L+++L R T EIA+ L++ + +
Sbjct: 152 IRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELAQQLGRSATPGEIAQALDLEPAQI 211
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETM-PERMVQKQLMKQELKELLQTLSE 320
R + R P+SLD V D + D++ DE + P+ + ++L++Q+L L+ L+
Sbjct: 212 REYLSMARQPVSLDVRVGDNQDTELSDLL--EDEGISPDNYITQELLRQDLNNLMAELTP 269
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYMV 379
++ ++L L FGL+ +S +IG+ L++SRER+RQ+ AL +L++ +N++ Y+V
Sbjct: 270 QQREVLSLRFGLEDGKELSLAKIGQRLNISRERVRQLEHQALAQLRRRR--SNVREYIV 326
>gi|291459241|ref|ZP_06598631.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
gi|291418495|gb|EFE92214.1| RNA polymerase sigma factor RpoD [Oribacterium sp. oral taxon 078
str. F0262]
Length = 398
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 144/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++R++ + LVVSIA Y G+G+S+ DLIQEG++GL++G ++F P++G+KLSTY WW
Sbjct: 159 ARQRLVEANLRLVVSIAKRYTGRGMSILDLIQEGNLGLMKGVEKFEPDKGFKLSTYATWW 218
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RA+A++SRTIR+P M + K+ L+ L P+ E+A LN+ +
Sbjct: 219 IRQGITRALADQSRTIRVPVHMVESINKVTRTQRRLTLELGYEPSPKELAASLNMTEEKL 278
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ ++ ++ P SL+ V D + D + PE+ ++++E+ +LL+ L +R
Sbjct: 279 KEILDVSKQPTSLETPVGDEEDSNLSDFVADEKMISPEQNAANVMLREEIDKLLENLKDR 338
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+L FGL G+ + +E+G++ ++RER+RQI AL K+ N L ++
Sbjct: 339 ERDVLIHRFGLHGEESHTLEEVGQMFGVTRERVRQIEAKALKKISLPKYKNALAGFL 395
>gi|297170837|gb|ADI21856.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[uncultured verrucomicrobium HF0130_25O04]
Length = 303
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/235 (39%), Positives = 146/235 (62%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + +++E +I + LVV IA Y GLSL DLI EG+IGL++ +RF+P +G K
Sbjct: 33 RIKNGDEKARETMITANLRLVVKIAKEYSNIGLSLLDLINEGNIGLMKAVERFDPSKGGK 92
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTY WWIKQAI RA+AN+S+TIRLP M V +I + L+ +L R PTD E+A
Sbjct: 93 LSTYGAWWIKQAIKRALANQSKTIRLPVHMVDRVTQIRRTSVQLAEKLGREPTDEELAAE 152
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+N+ V+ + L +R P SLD + + T+ +++ P +Q + + ++
Sbjct: 153 MNLPVARITLLKSVSRKPASLDSPLGENDGSTLGEMVADEKSANPYEHLQSKSLVGDVNS 212
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
+L L READI+RL FGL+G P++ +E+G + ++RER+RQ++ AL +L++
Sbjct: 213 VLAQLEPREADIIRLRFGLEGLEPLTLEEVGEKIGVTRERVRQLQEQALRQLRKN 267
>gi|256375646|ref|YP_003099306.1| RNA polymerase sigma factor [Actinosynnema mirum DSM 43827]
gi|255919949|gb|ACU35460.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 435
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 209 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 268
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 269 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 328
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 329 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGL 388
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 389 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 434
>gi|1149588|emb|CAA89984.1| SigA sigma factor [Corynebacterium glutamicum]
Length = 497
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 146/239 (61%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R+++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 258 RKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYAT 317
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+++ ++I
Sbjct: 318 WWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQELGREPTPQELSKEMDISEE 377
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISLD + D G + D I + + V L++ +L+++L+TLS
Sbjct: 378 KVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQDVLETLS 437
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA +++L FGL P + EIG++ ++RERIRQI ++K + + L+ Y+
Sbjct: 438 EREAGVVKLRFGLTDGMPRTLDEIGQVYGVTRERIRQIESKTMSKRRHPSRSQVLRDYL 496
>gi|296133798|ref|YP_003641045.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermincola potens
JR]
gi|296032376|gb|ADG83144.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermincola
potens JR]
Length = 366
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 145/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+GL DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 126 DEEAKRRLAEANLRLVVSIAKRYVGRGLLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 185
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA ++I V
Sbjct: 186 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAEMDIPV 245
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P L++++L+E+L+TL
Sbjct: 246 DRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILLREQLEEVLETL 305
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK ++
Sbjct: 306 TPREEKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 365
>gi|383819225|ref|ZP_09974501.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
gi|383337196|gb|EID15577.1| RNA polymerase sigma factor SigB [Mycobacterium phlei RIVM601174]
Length = 319
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 134/225 (59%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 93 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMAD 152
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A + ++L R TD E+A I V + +E +R P+
Sbjct: 153 QSRTIRLPVHLVEQVNKLARIKREMHQQLGREATDEELAAESGIPVEKINDLLEHSRDPV 212
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + + D I + E V +L+ +++ +L TL ERE ++RL FGL
Sbjct: 213 SLDMPVGNDEEAPLGDFIEDAEAMSAENAVISELLHTDIRHVLATLDEREQQVIRLRFGL 272
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI + KL+ + L+ Y
Sbjct: 273 DDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRAY 317
>gi|386820151|ref|ZP_10107367.1| RNA polymerase sigma factor, sigma-70 family [Joostella marina DSM
19592]
gi|386425257|gb|EIJ39087.1| RNA polymerase sigma factor, sigma-70 family [Joostella marina DSM
19592]
Length = 287
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 152/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R+P+ EIA+ L++ ++ V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQAHERVPSAEEIAKELDMSINDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + + + D++ + P++ + + ++ E++ L+TL+ REA
Sbjct: 172 SMKNSGRHVSMDAPLVEGEDSNLYDVLRSGESPNPDKDLLHESLRTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 145/238 (60%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++++ +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P RGY+ STY YW
Sbjct: 167 QAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYW 226
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA +SRTIRLP + + KI +A +S+ R T +IA L +
Sbjct: 227 WIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSRTATIDDIATELKMTPDQ 286
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
+R + R +SL+ V + D++ +E+ PE ++ ++ + +EL+ LL LS
Sbjct: 287 IREVLLRVPRSVSLETKVGTDKDTELGDLLE-TEESTPEELLMRESLYRELQNLLADLSG 345
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+E ++++ +GL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 346 KERAVIQMRYGLGDGHPYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 403
>gi|295132793|ref|YP_003583469.1| RNA polymerase sigma-70 factor [Zunongwangia profunda SM-A87]
gi|294980808|gb|ADF51273.1| RNA polymerase sigma-70 factor [Zunongwangia profunda SM-A87]
Length = 287
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 151/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ AKRF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAKRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA+ L++ ++ V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQSHERPPSAEEIAKELDMTINDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + + + D++ + P++ + + ++ E++ L+TL+ REA
Sbjct: 172 SMKNSGRHVSMDAPLVEGEDSNLYDVLRSGESPNPDKDLLHESLRTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|291280296|ref|YP_003497131.1| DNA-directed RNA polymerase sigma 70 factor [Deferribacter
desulfuricans SSM1]
gi|290754998|dbj|BAI81375.1| DNA-directed RNA polymerase sigma 70 factor [Deferribacter
desulfuricans SSM1]
Length = 313
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 149/233 (63%), Gaps = 2/233 (0%)
Query: 125 ELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
E +Y L K +I ++++ E+++ S VVSIA Y+ GL L D+I +G++GLL AK
Sbjct: 61 EEEYELGK-RIQQGDKKALEKLVLSNLKFVVSIANRYKNTGLPLADIINQGNLGLLEAAK 119
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
RF+PERG K +Y WWI+QAII+A+A +S T++LP A ++ KI EA VLS+ L R
Sbjct: 120 RFDPERGVKFISYAVWWIRQAIIQALAEQSGTVKLPLKQASILYKINEAIEVLSKELGRE 179
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
PT EIA L++ + + + +R+ +SL+ + D D++ +++ E +
Sbjct: 180 PTPDEIAVYLDMDPADIENVLRVSRNYLSLEAPIKDGEDRAFIDLLESGGKSVEEEIFLN 239
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQI 357
L K ++E++ L+EREA I++ FGL+G+TP + +EIG +L++SRER+RQI
Sbjct: 240 TL-KANIEEIVDELNEREAQIIKWRFGLEGETPKTLEEIGEILNISRERVRQI 291
>gi|227510293|ref|ZP_03940342.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
gi|227524444|ref|ZP_03954493.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
hilgardii ATCC 8290]
gi|227088403|gb|EEI23715.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
hilgardii ATCC 8290]
gi|227189945|gb|EEI70012.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
brevis subsp. gravesensis ATCC 27305]
Length = 389
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 149/250 (59%), Gaps = 1/250 (0%)
Query: 129 NLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
NL K +I + E+++ + + LVVSIA Y G+G+ DLIQEG++GL++ ++F+
Sbjct: 140 NLAK-RIESGDEEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDY 198
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
+G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P
Sbjct: 199 RKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPE 258
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMK 308
EI +++ VR ++ + P+SL+ + + + D I D T P +L+K
Sbjct: 259 EIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLK 318
Query: 309 QELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
++L+ +L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+
Sbjct: 319 EQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHP 378
Query: 369 NILNNLKVYM 378
+ LK ++
Sbjct: 379 SRSKQLKDFL 388
>gi|307718169|ref|YP_003873701.1| RNA polymerase sigma-70 factor family protein [Spirochaeta
thermophila DSM 6192]
gi|306531894|gb|ADN01428.1| RNA polymerase sigma-70 factor family protein [Spirochaeta
thermophila DSM 6192]
Length = 303
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 150/241 (62%), Gaps = 1/241 (0%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++ ++E+++ + VV++A YQ +GL L DLI EG+IGLL +RF+P++GY +Y
Sbjct: 61 DQHAKEKLVTANLRFVVNVAKKYQNQGLPLADLISEGNIGLLNAIERFDPDKGYHFISYA 120
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI++AI+ KSR IRLP + A + +I +A ++ ++AE L+
Sbjct: 121 VWWIRQAILKAISEKSRMIRLPLNRANELVQIEKARKLVQTESGEHNEIKKVAETLDYDE 180
Query: 259 STVRLAIERTRHPISLDGAV-TDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQT 317
V + ++ +SLD V DR + D + PE +V ++ +++E++E+L T
Sbjct: 181 DHVANLLNLSKEYVSLDTPVYEDRDSAMLGDYLKDEASRPPEDVVLEKTLQEEIQEVLAT 240
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
L+E+EA+I++ FGL+G+ P+S KEIG L +L++ERIRQI AL K+QQ+ L+ Y
Sbjct: 241 LTEKEAEIIQYRFGLNGRHPMSLKEIGDLYNLTKERIRQIEKKALKKIQQSEKAKILETY 300
Query: 378 M 378
+
Sbjct: 301 L 301
>gi|227513300|ref|ZP_03943349.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
buchneri ATCC 11577]
gi|227083501|gb|EEI18813.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
buchneri ATCC 11577]
Length = 389
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 149/250 (59%), Gaps = 1/250 (0%)
Query: 129 NLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
NL K +I + E+++ + + LVVSIA Y G+G+ DLIQEG++GL++ ++F+
Sbjct: 140 NLAK-RIESGDEEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDY 198
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
+G+K STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P
Sbjct: 199 RKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPE 258
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMK 308
EI +++ VR ++ + P+SL+ + + + D I D T P +L+K
Sbjct: 259 EIGAEMDMPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLK 318
Query: 309 QELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
++L+ +L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+
Sbjct: 319 EQLESVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHP 378
Query: 369 NILNNLKVYM 378
+ LK ++
Sbjct: 379 SRSKQLKDFL 388
>gi|323490072|ref|ZP_08095293.1| RNA polymerase sigma factor RpoD [Planococcus donghaensis MPA1U2]
gi|323396368|gb|EGA89193.1| RNA polymerase sigma factor RpoD [Planococcus donghaensis MPA1U2]
Length = 384
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 144 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYSKGFKFSTYA 203
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 204 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPSPEEIGEEMDLLP 263
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P +L+K++L+++L TL
Sbjct: 264 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSDAQSPSDHAAYELLKEQLEDVLDTL 323
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 324 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 383
>gi|163787530|ref|ZP_02181977.1| RNA polymerase sigma-70 factor [Flavobacteriales bacterium ALC-1]
gi|159877418|gb|EDP71475.1| RNA polymerase sigma-70 factor [Flavobacteriales bacterium ALC-1]
Length = 287
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 151/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI + L + R P+ EIA+ L++ ++ V+
Sbjct: 112 QSILQALAEQSRIVRLPLNKIGSINKINKTFAFLEQSHERPPSAEEIAKELDMTINDVKE 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
+++ + +S+D + + + D++ + P+R + + ++ E++ L+TL+ REA
Sbjct: 172 SMKNSGRHVSMDAPLVEGEDSNLYDVLRSGESPNPDRDLLHESLRTEIERALETLTPREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVIRLYFGLGNQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKILKTYL 286
>gi|86607249|ref|YP_476012.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
gi|86555791|gb|ABD00749.1| RNA polymerase sigma factor, group 1 [Synechococcus sp. JA-3-3Ab]
Length = 361
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 137/226 (60%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++Q ++I + LVVS+A Y +G+ DLIQEG++GL+R ++FN ERG++ STY +W
Sbjct: 123 QAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNMGLIRATEKFNAERGFRFSTYAHW 182
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I R IAN++RTIRLP M V + N L + R PT++E+AE L I V
Sbjct: 183 WIRQGITRCIANQARTIRLPVHMVDKVRLLKRTNRELMKARGRRPTEAELAEALGIKVKK 242
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
+R+ + P+SLD V G + D++P + P + Q ++Q+++ +Q L
Sbjct: 243 LRMIQQAAALPLSLDVPVGQEGESRLGDLLPDERQEQPFEEILVQSLRQDVRSAMQALKP 302
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
E +L L +GLDGQ + +E+G +L+RERIRQI AL KL+
Sbjct: 303 IERQVLELRYGLDGQRARTLREVGDHFNLTRERIRQIERDALRKLR 348
>gi|312129690|ref|YP_003997030.1| RNA polymerase, sigma 70 subunit, rpod subfamily [Leadbetterella
byssophila DSM 17132]
gi|311906236|gb|ADQ16677.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leadbetterella
byssophila DSM 17132]
Length = 287
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 168/275 (61%), Gaps = 9/275 (3%)
Query: 113 TKESDFLDK---ENGELDY------NLVKYKILCKERESQERIIRSYRSLVVSIATGYQG 163
+ES LDK E G++D ++ KI ++ S ER+ ++ VVS+A YQ
Sbjct: 12 NRESQSLDKYLQEIGKVDLLTPDEEVILAQKIRDGDQLSLERLTKANLRFVVSVAKQYQN 71
Query: 164 KGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSM 223
+GLSL DLI EG++GL++ A+RF+ RG+K +Y WWI+Q+I++A+A +SR +RLP +
Sbjct: 72 QGLSLGDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNR 131
Query: 224 AGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGC 283
G + KI++ + L +R R P+ E+AE+L I + V ++ + +S+D
Sbjct: 132 VGSLNKISKTFSELEQRFEREPSPEELAEVLEISANEVVDTMKISGRHVSVDAPFVQGEE 191
Query: 284 MTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEI 343
++ D++ E P++ + +++E+ L TL++REA+++ +FGL+G+ ++ +EI
Sbjct: 192 NSLLDVLENDTEIRPDQELMNDSLRREVLRALSTLTQREAEVIMFYFGLNGEQAMTLEEI 251
Query: 344 GRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
G +L+RER+RQI+ A+ +L+QT+ LK Y+
Sbjct: 252 GEKFNLTRERVRQIKEKAIRRLRQTSRSKALKAYL 286
>gi|226324578|ref|ZP_03800096.1| hypothetical protein COPCOM_02362 [Coprococcus comes ATCC 27758]
gi|225207026|gb|EEG89380.1| RNA polymerase sigma factor RpoD [Coprococcus comes ATCC 27758]
Length = 371
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ ++G+K STY
Sbjct: 131 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYQKGFKFSTYA 190
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA L++ V
Sbjct: 191 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAELDMPV 250
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P + L+K++L E+L TL
Sbjct: 251 DRVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLSTL 310
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FG+ + +E+G+ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 311 TEREQKVLRLRFGMSDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 370
>gi|149921032|ref|ZP_01909492.1| RNA polymerase sigma factor RpoD [Plesiocystis pacifica SIR-1]
gi|149818164|gb|EDM77620.1| RNA polymerase sigma factor RpoD [Plesiocystis pacifica SIR-1]
Length = 547
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 158/277 (57%), Gaps = 5/277 (1%)
Query: 107 SRRKKRTKESDFLDKENGELDYNLVK-YKILCKERESQE----RIIRSYRSLVVSIATGY 161
+R K TK +++E G NLV Y L K R +E ++ + LVVSIA Y
Sbjct: 269 TRMKVATKRIRQVEQETGVSADNLVALYDSLTKARREREAAKAELVEANLRLVVSIAKKY 328
Query: 162 QGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPG 221
+GL DLIQEG+IGL++ +F +RGYK STY WWI+QAI RAI++++RTIR+P
Sbjct: 329 TNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAISDQARTIRVPV 388
Query: 222 SMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDR 281
M + K+ L + R PT EIAE +N+ V VR + + PISL+ + +
Sbjct: 389 HMIESINKLIRTTRQLVQEFGREPTHQEIAEKMNMPVEKVRSILRIAKEPISLETPLGED 448
Query: 282 GCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCK 341
G ++ D+I + P V ++ + E + L +L+ RE ILRL FG+ + + +
Sbjct: 449 GDSSLGDLIEDKNALDPGSGVVERHLGDETRRALASLTPREEKILRLRFGIGEASDHTLE 508
Query: 342 EIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E+GR S++RERIRQI AL+KL++ + L+ ++
Sbjct: 509 EVGRDFSVTRERIRQIEAKALSKLRKADRAKQLREFV 545
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 153/238 (64%), Gaps = 5/238 (2%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ +++ + LVVS+A Y + + L DLIQEGSIG+ RG ++F+P +GY+ STY YWW
Sbjct: 114 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 173
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA K+RTIRLP + + KI +A LS++L R PT +E+A+ L + V
Sbjct: 174 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQQLGRAPTAAELAQELELTPKQV 233
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R +E+ R P+SLD + D + +++ P + PE V + + +L+ L+ L+ +
Sbjct: 234 REYLEKARLPLSLDLRLGDNYDTELGEMLEDPGAS-PEEFVMQSSLSYDLERLIAELTPQ 292
Query: 322 EADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ +++ L FGL DGQ ++ +IG +L++SRER+RQI ALTKL+++ N+ Y+
Sbjct: 293 QKEVITLRFGLIDGQA-LTLAKIGEILNISRERVRQIEREALTKLRKSK--ANMDEYL 347
>gi|356565804|ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K+L + Q+ +IRS RSLV+ +A Y+G G++L DL+Q G +G+L+GA+RF+ RGYK
Sbjct: 305 KLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYK 364
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STYV +WI+++I+R +A +R I +P S+ + +I +A + ++ P D EIA+M
Sbjct: 365 FSTYVQYWIRKSILRVVARYARGIVIPWSLNRAINQIQKARKAMKSTHKKCPDDYEIAKM 424
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + ++ A R S+D V D + +++P PE V KQ M++++ +
Sbjct: 425 TGLSLDKIKSASNCLRIVASIDQKVGDYLGVEYMELLPDATIESPEDAVMKQHMRKDVHD 484
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL+ L+ RE IL L FGL+ P S ++IG L +S+ERIR+I ALTKL+ ++
Sbjct: 485 LLKGLNLRERKILTLRFGLNDNQPRSLQDIGTLFKVSKERIRKIEKKALTKLKNEATISK 544
Query: 374 LKVYM 378
L Y+
Sbjct: 545 LHYYL 549
>gi|223985702|ref|ZP_03635749.1| hypothetical protein HOLDEFILI_03055 [Holdemania filiformis DSM
12042]
gi|223962313|gb|EEF66778.1| hypothetical protein HOLDEFILI_03055 [Holdemania filiformis DSM
12042]
Length = 408
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/236 (41%), Positives = 143/236 (60%), Gaps = 3/236 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ +I S LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 160 RIQAGDEEAKRILISSNLRLVVSIAKKYVGRGMLFLDLIQEGNMGLVKAVEKFDYTKGFK 219
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE- 252
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 220 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLTRVQRQLVQDLGREPTAEEIAEK 279
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
M NI VR + P+SL+ + + + D I D P++ QL+K E+
Sbjct: 280 MENITPDKVREIQKIALEPVSLETPIGEEDDSHLGDFIEDKDAMSPDQYANNQLLKDEIN 339
Query: 313 ELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+LQ L+ERE +LRL FGL DG+T + +E+G+ +++RERIRQI AL KL+
Sbjct: 340 NVLQGLTEREEKVLRLRFGLYDGRTR-TLEEVGKEFNVTRERIRQIEAKALRKLKH 394
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 149/244 (61%), Gaps = 1/244 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ R+IRS LVVSIA Y +G+ DLIQEG++GL R A++F+P++GYK S
Sbjct: 223 LRQARAAKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFS 282
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+Q I R IAN +RTIRLP + + K+ +A L + L+R PT+ E+A L
Sbjct: 283 TYAYWWIRQGITRTIANDARTIRLPIHIVEKLNKLKKAQRELRKELQRTPTEVEVAAALE 342
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
+ +R + R +SL+ V + +++ + PE + + +M+QE+ ++L
Sbjct: 343 MTPEQLRTLQQVQRKSLSLNHRVGKGEDTELMELLEDGNSLSPESQISESMMRQEISDVL 402
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
+ L+ERE +I+ L +GL + +E+G + LSRER+RQI+ A+ KL++ + L
Sbjct: 403 TEVLTEREKEIIALRYGLTTGETHTLEEVGGIFQLSRERVRQIQTKAMRKLRRPQVAARL 462
Query: 375 KVYM 378
K ++
Sbjct: 463 KNWL 466
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/247 (38%), Positives = 153/247 (61%), Gaps = 5/247 (2%)
Query: 133 YKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
Y+ C +R ++IRS LVVSIA Y +G+ DLIQEG+IGL R ++F+P +GY
Sbjct: 132 YRGRCAKR----KMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGY 187
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY YWWI+QAI R IAN +RTIRLP + + K+ +A VL + L+R P + E+A+
Sbjct: 188 KFSTYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQNLQRNPNEDELAQ 247
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
L + + +R ++ R +SL+ V + D++ D +PE + + +++QE+
Sbjct: 248 ELEVSRNQLRQLLQLRRQSLSLNHRVGKGEDTELVDLLEDNDLQLPEEKMSEAMLRQEIS 307
Query: 313 ELL-QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
E+L L+ERE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ +
Sbjct: 308 EVLSDVLTEREKDVISLRYGLATSQPYTLEEVGGMFNLSRERVRQIQSKAMRKLRRPQVA 367
Query: 372 NNLKVYM 378
LK ++
Sbjct: 368 RRLKGWL 374
>gi|403384152|ref|ZP_10926209.1| RNA polymerase sigma factor RpoD [Kurthia sp. JC30]
Length = 375
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 155/264 (58%), Gaps = 6/264 (2%)
Query: 121 KENGELDYNLVKYKILCKER------ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQE 174
KE G +D +I ER E+++R+ + LVVSIA Y G+G+ DLIQE
Sbjct: 111 KEIGRVDLLSAAEEIALAERIEQGDEEARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQE 170
Query: 175 GSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEAN 234
G++GL++ ++F+ +G+K STY WWI+QAI RAIA+++RTIR+P M + K+
Sbjct: 171 GNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQ 230
Query: 235 NVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPD 294
L + L R PT EI E +++ VR ++ + P+SL+ + + + D I +
Sbjct: 231 RQLLQDLGREPTPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSE 290
Query: 295 ETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERI 354
P +L+K++L+++L TL++RE ++LRL FGLD + +E+G++ ++RERI
Sbjct: 291 AQSPADHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 350
Query: 355 RQIRGIALTKLQQTNILNNLKVYM 378
RQI AL KL+ + LK ++
Sbjct: 351 RQIEAKALRKLRHPSRSKRLKDFL 374
>gi|169838629|ref|ZP_02871817.1| RNA polymerase sigma factor RpoD [candidate division TM7
single-cell isolate TM7a]
Length = 323
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 149/249 (59%), Gaps = 3/249 (1%)
Query: 133 YKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
++++ ++++++++ + LVVSIA Y G+GL DLIQEG+ GLLR ++F+P++G+
Sbjct: 74 HRVVQGDKKAKDKMAEANMRLVVSIAKRYSGRGLDFLDLIQEGNTGLLRAVEKFDPDKGF 133
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI RAIA+++R IR+P M + K+ +++ L R PT E+++
Sbjct: 134 KFSTYATWWIRQAITRAIADQARVIRIPVHMVETINKLLRTQRRMTQELNREPTIEELSK 193
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAV---TDRGCMTMQDIIPGPDETMPERMVQKQLMKQ 309
L++ + ++ + SLD V D + D I D PE QL+K+
Sbjct: 194 ELDMEPDKIEYVMKIKQDIHSLDAGVGRDGDEEDSVLGDFIEDEDTATPEESASSQLLKE 253
Query: 310 ELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369
+++ +L +LS+RE I+++ FGL+ + +E+G+ +++RERIRQI AL KL++
Sbjct: 254 QVQGILSSLSDREQKIIKMRFGLENGKSHTLEEVGQEFAVTRERIRQIEAKALAKLRKHK 313
Query: 370 ILNNLKVYM 378
L Y+
Sbjct: 314 DAKKLHEYL 322
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 137/215 (63%), Gaps = 1/215 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y + + L DLIQEG+IG+ RG ++F+P +GY+ STY YWWI+QAI RAIA
Sbjct: 91 LVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAE 150
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
K RTIRLP + + KI +A LS+RL R T +E+A L + + VR +ER R P+
Sbjct: 151 KGRTIRLPIHITEKLNKIKKAQRQLSQRLGRAATINELAAELELTPAQVREYLERARQPL 210
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V D + +++ PE + L++ +L+ L+ L+ ++ +L L FGL
Sbjct: 211 SLDVRVGDNQDTELGELLEDSS-ISPEEFATQSLLRSDLERLMAELTPQQRHVLSLRFGL 269
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ P++ ++G LL++SRER+RQI AL+KL++
Sbjct: 270 ENGQPLTLAKVGELLNISRERVRQIEREALSKLRK 304
>gi|406965492|gb|EKD91117.1| hypothetical protein ACD_30C00043G0003 [uncultured bacterium]
Length = 364
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/237 (39%), Positives = 140/237 (59%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ ++I + LVVSIA Y G+G+SL DLI+EG+IGL+R ++++ RG+K STY WW
Sbjct: 128 AKHQLISANLRLVVSIAKKYVGRGMSLLDLIEEGNIGLMRAVEKYDWRRGFKFSTYATWW 187
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + + L + L R PT E+AE L I S
Sbjct: 188 IRQAITRAIADQARTIRIPVHMVETINRFNRTQRRLMQELGREPTPEEVAEALGIDPSKA 247
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ ++ P SL V D + D I P P+ ++L+K L E+L TLS R
Sbjct: 248 REIVKVSQEPTSLATPVGDEDDSQLGDFIEAPG-LKPDEQATRELLKDHLDEVLNTLSPR 306
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +L+L FGL+ + +E+G+ ++RERIRQI A+ KL+ L+ Y+
Sbjct: 307 EKRVLQLRFGLEDGKQRTLEEVGKEFGVTRERIRQIEAKAVRKLKHPTRAKKLRDYL 363
>gi|406908038|gb|EKD48670.1| hypothetical protein ACD_64C00189G0002 [uncultured bacterium]
Length = 783
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 145/231 (62%)
Query: 137 CKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLST 196
K++ +++ + ++ LVV+IA Y +GL DLIQEG+IGL++ ++F ERGYK ST
Sbjct: 511 IKDKRAKDDLAKANLRLVVNIAKKYVNRGLHFLDLIQEGNIGLMKAVEKFEFERGYKFST 570
Query: 197 YVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNI 256
Y WWI+QAI RAIA++SRTIR+P M + KI + + R PT +E+A+ LN+
Sbjct: 571 YATWWIRQAITRAIADQSRTIRVPVHMVETLNKINKIKRTFIQDNGREPTYAELAKELNL 630
Query: 257 HVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQ 316
++ I+ ++ PISL+ V D T++D I +E P + +K+ ++E+L+
Sbjct: 631 DEKKIKNIIKISKEPISLETPVGDSEDATIKDFIENENEFSPSETIANTDLKERVREVLK 690
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
TL+ RE +L++ FG+D + + +E+G+ S++RERIRQI AL KL+
Sbjct: 691 TLTPREEKVLKMRFGIDVASEHTLEEVGKDFSVTRERIRQIEVKALKKLRH 741
>gi|365876691|ref|ZP_09416210.1| RNA polymerase sigma factor RpoD [Elizabethkingia anophelis Ag1]
gi|442586989|ref|ZP_21005810.1| RNA polymerase sigma factor RpoD [Elizabethkingia anophelis R26]
gi|365755689|gb|EHM97609.1| RNA polymerase sigma factor RpoD [Elizabethkingia anophelis Ag1]
gi|442563222|gb|ELR80436.1| RNA polymerase sigma factor RpoD [Elizabethkingia anophelis R26]
Length = 288
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 157/245 (64%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI +R + E++I++ VVS++ YQ +GLSL DLI EG++GL++ AKR++ RG+K
Sbjct: 42 KIRAGDRVALEKLIKANLRFVVSVSKQYQNQGLSLPDLINEGNLGLMKAAKRYDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI +A L + R P+ E+AE+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKAYAHLEQENERPPSPEELAEV 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ ++ +++ + +S+D + + + D++ + P++ + + ++ E++
Sbjct: 162 LDMSEEDIKESMKNSGRHLSMDAPLVEGEDSNLYDVLRSGESPSPDKDLMLESLQIEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TL+ READ++RL+FGL+G+ P++ +EIG L+RER+RQI+ A+ +L+ +
Sbjct: 222 ALNTLTPREADLVRLYFGLNGKHPMTLEEIGETFDLTRERVRQIKEKAIKRLKHNSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKSYL 286
>gi|227504896|ref|ZP_03934945.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
gi|227198489|gb|EEI78537.1| RNA polymerase sigma factor SigB [Corynebacterium striatum ATCC
6940]
Length = 337
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 147/245 (60%), Gaps = 1/245 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
KIL +E ++++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+
Sbjct: 91 KILVREGKKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGF 150
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + + L R T+ E+AE
Sbjct: 151 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQSLGREATNEELAE 210
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I S + + + ++R P+SLD V + D I + T E V + +++
Sbjct: 211 ESGIEESKIEMLLRQSRDPVSLDMPVGTDEEAPLGDFIEDAEATDAETAVVAAMRHSDIR 270
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+++TL ERE D++RL +GLD P + +IGR LSRER+RQI + KL+ N +
Sbjct: 271 GVIETLEEREQDVIRLRYGLDDGVPRTLDQIGRKFGLSRERVRQIEREVMAKLRDGNRAD 330
Query: 373 NLKVY 377
L+ Y
Sbjct: 331 RLREY 335
>gi|41408918|ref|NP_961754.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397277|gb|AAS05137.1| SigA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 509
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 265 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 324
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + R PT E+A+ +
Sbjct: 325 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDPGREPTPEELAKEM 384
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 385 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 444
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 445 LETLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 503
Query: 374 LKVYM 378
L+ Y+
Sbjct: 504 LRDYL 508
>gi|433603618|ref|YP_007035987.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
gi|407881471|emb|CCH29114.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
Length = 435
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 209 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 268
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 269 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 328
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 329 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLATLSEREAGVVRLRFGL 388
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 389 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 434
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 153/244 (62%), Gaps = 1/244 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R ++ ++IRS LVVSIA Y +G+ DLIQEG+IGL R A++F+P +GYK S
Sbjct: 128 LYRGRAAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFS 187
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+QAI R IAN +RTIRLP + + K+ +A VL ++L R PT+ E+A+ L
Sbjct: 188 TYAYWWIRQAITRTIANDARTIRLPIHIVEKLNKLKKAQRVLKQQLHRNPTEQELAQALE 247
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
I +R ++ R +SL+ V + D++ + +PE + + +M+Q++ +L
Sbjct: 248 IDCEHLRQLLQLRRQSLSLNHRVGKGEDTELVDLLEDEELQLPEEKMNEAMMRQDIAAVL 307
Query: 316 -QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374
L+ERE D++ L +GL P + +E+G + +LSRER+RQI+ A+ KL++ + L
Sbjct: 308 TDVLTEREKDVIALRYGLITSQPYTLEEVGGIFNLSRERVRQIQSKAMRKLRRPQVARRL 367
Query: 375 KVYM 378
K ++
Sbjct: 368 KGWL 371
>gi|253580849|ref|ZP_04858112.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847919|gb|EES75886.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 375
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 147/237 (62%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY WW
Sbjct: 138 AKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYATWW 197
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA+ +++ V V
Sbjct: 198 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMDMSVERV 257
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ ++ P+SL+ + + + D I + +P L+K++L E+L TL++R
Sbjct: 258 REILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVEVLSTLTDR 317
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 318 EQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 374
>gi|386005579|ref|YP_005923858.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
gi|380726067|gb|AFE13862.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
Length = 324
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 141/227 (62%), Gaps = 2/227 (0%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK STY WWI+QAI RA+A+
Sbjct: 98 LVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMAD 157
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ L + L R PT E+A+ ++I V + R PI
Sbjct: 158 QARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPI 217
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD + D G + D I + + V L++ +L+ +L TLSEREA ++RL FGL
Sbjct: 218 SLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGL 277
Query: 333 -DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 278 TDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 323
>gi|325263837|ref|ZP_08130570.1| RNA polymerase sigma factor RpoD [Clostridium sp. D5]
gi|324030875|gb|EGB92157.1| RNA polymerase sigma factor RpoD [Clostridium sp. D5]
Length = 369
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 141/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY WWI+QAI RAIA+
Sbjct: 143 LVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYHKGYKFSTYATWWIRQAITRAIAD 202
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ + L + L R PT EIA+ L++ V VR ++ ++ P+
Sbjct: 203 QARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKELDMPVERVREILKISQEPV 262
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I + +P + L+K++L E+L TL+ERE +LRL FG+
Sbjct: 263 SLETPIGEEEDSHLGDFIQDDNVPVPAEAAAQTLLKEQLDEVLDTLTEREQKVLRLRFGM 322
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ + +E+G+ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 323 NDGRARTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSRKLRDYL 368
>gi|410460493|ref|ZP_11314171.1| RNA polymerase sigma factor RpoD [Bacillus azotoformans LMG 9581]
gi|409927108|gb|EKN64254.1| RNA polymerase sigma factor RpoD [Bacillus azotoformans LMG 9581]
Length = 380
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 155/264 (58%), Gaps = 6/264 (2%)
Query: 121 KENGELDYNLVKYKILCKER------ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQE 174
KE G +D +I ER E++ R+ + LVVSIA Y G+G+ DLIQE
Sbjct: 116 KEIGRVDLLSADEEIQLAERIEKGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQE 175
Query: 175 GSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEAN 234
G++GL++ ++F+ +G+K STY WWI+QAI RAIA+++RTIR+P M + K+
Sbjct: 176 GNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQ 235
Query: 235 NVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPD 294
L + L R P+ EI E +++ VR ++ + P+SL+ + + + D I +
Sbjct: 236 RQLLQDLGREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQE 295
Query: 295 ETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERI 354
T P +L+K++L+++L TL++RE ++LRL FGLD + +E+G++ ++RERI
Sbjct: 296 ATSPSDAAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 355
Query: 355 RQIRGIALTKLQQTNILNNLKVYM 378
RQI AL KL+ + LK ++
Sbjct: 356 RQIEAKALRKLRHPSRSKRLKDFL 379
>gi|406950200|gb|EKD80502.1| hypothetical protein ACD_40C00073G0002 [uncultured bacterium]
Length = 390
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 147/237 (62%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E++ S LVVSIA Y G+G+S DLIQEG+ GL+R +++N ++G+K STY WW
Sbjct: 153 AKEKLTSSNLRLVVSIAKKYIGRGMSFLDLIQEGNKGLIRAVEKYNWKKGFKFSTYATWW 212
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + L + L R PT E+AE++ I V
Sbjct: 213 IRQAITRAIADQARTIRIPVHMVETINKLIRISRKLMQTLGREPTPEEVAEVMEITPDKV 272
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ ++ SL+ + D + D I + P + ++L+++ ++E+L LS+R
Sbjct: 273 REILKISQKTTSLETPIGDDEDSYLGDFIEDTKQASPYELTTQRLLRENIEEVLAGLSDR 332
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E+ +L + FGL G P++ +E+GR ++RERIRQI AL KL+ + L+ Y+
Sbjct: 333 ESKVLEMRFGLRGAKPMTLEEVGREFGVTRERIRQIEAKALRKLKHPSKRRMLQDYL 389
>gi|319955411|ref|YP_004166678.1| RNA polymerase, sigma 70 subunit, rpod subfamily [Cellulophaga
algicola DSM 14237]
gi|319424071|gb|ADV51180.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cellulophaga
algicola DSM 14237]
Length = 286
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 141/226 (62%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
VVS+A YQG GL L DLI EG++GL++ AKRF+ RG+K +Y WWI+Q+I++AI+
Sbjct: 61 FVVSVAKQYQGSGLRLSDLINEGNVGLVKAAKRFDETRGFKFISYAVWWIRQSILQAISE 120
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
SR +RLP + G + KI + + L + L+R P EIA L++ S V+LA++ T +
Sbjct: 121 LSRMVRLPLNKIGEIGKINKVFSYLEQSLQRPPNAIEIARELDMSTSQVKLAMKNTGKHL 180
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
S+D + + +++ + P+ + ++ + ++ +LL TL RE+DI+RL++G+
Sbjct: 181 SMDAPFAEGESSNLYNVVQSKEANSPDTNLMQESLSSDIGDLLSTLPSRESDIIRLYYGI 240
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ P+S EIG + +SRER+RQIR A+ L++ + LK Y+
Sbjct: 241 GEKAPMSLTEIGEIFDISRERVRQIREKAIRVLRRKSQKEVLKAYL 286
>gi|159037062|ref|YP_001536315.1| RNA polymerase sigma factor SigB [Salinispora arenicola CNS-205]
gi|157915897|gb|ABV97324.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 328
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 146/245 (59%), Gaps = 3/245 (1%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+ + R +++ ++ + LVVSIA Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 83 VAVEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 142
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A++SRTIR+P M V ++ LS L R PT +E+A L
Sbjct: 143 STYATWWIRQAITRAMADQSRTIRIPVHMVEQVNRMVRTRRDLSVSLGREPTVTEVARAL 202
Query: 255 NI-HVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDET-MPERMVQKQLMKQELK 312
++ V + L I R P+SLD AV + G + D + + T P+ ++ ++QE++
Sbjct: 203 DVPEVQIIEL-ISYDREPVSLDQAVGEDGESPLGDFVAVVNATAAPDNTAERGELRQEVR 261
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TLS+RE ++RL FGLD + E+GR LSRERIRQI L KL+
Sbjct: 262 GVLATLSQREQAVIRLRFGLDDGRQRTLDEVGREFGLSRERIRQIEKGTLRKLRAPERAQ 321
Query: 373 NLKVY 377
L Y
Sbjct: 322 RLAAY 326
>gi|116074180|ref|ZP_01471442.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
gi|116069485|gb|EAU75237.1| Possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. RS9916]
Length = 364
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 152/246 (61%), Gaps = 1/246 (0%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
K L + R +++R+I++ LVV++A YQ +GL L DL+QEG++GL R ++F+P RG++
Sbjct: 116 KRLREGRRARDRMIQANLRLVVTVAKKYQQRGLELLDLVQEGTLGLERAVEKFDPTRGFR 175
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+Q I RAIA +SRTIRLP + + +I + ++ R+ + S+++
Sbjct: 176 FSTYAYWWIRQGITRAIATQSRTIRLPVHVTEKLNRIKKVQQEIATNEGRIASISDLSRA 235
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L I TVRL + R +SL+ V + D++ T PE+ + K + +L+E
Sbjct: 236 LGISEETVRLTLMRVPRSVSLETRVGKDQDTQLGDLLEDCHAT-PEQTLTKNSLHSDLEE 294
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL L+ REA+++R FGL+ TP++ EIG + LSRER+RQI AL KL+Q +
Sbjct: 295 LLGELTAREAEVIRRRFGLEDDTPLTLAEIGETMGLSRERVRQIETRALLKLRQPQRRSK 354
Query: 374 LKVYMV 379
++ Y++
Sbjct: 355 VRDYIL 360
>gi|383761703|ref|YP_005440685.1| putative RNA polymerase sigma factor [Caldilinea aerophila DSM
14535 = NBRC 104270]
gi|381381971|dbj|BAL98787.1| putative RNA polymerase sigma factor [Caldilinea aerophila DSM
14535 = NBRC 104270]
Length = 433
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 141/237 (59%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+QE +I++ LVVS+A Y G+G+ DLIQEG+IGL+R K+F+ RGYK STY WW
Sbjct: 197 AQEHLIKANSRLVVSVAKKYVGRGVPFLDLIQEGNIGLIRAVKKFDYSRGYKFSTYATWW 256
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QA+ RAIA++ RTIR+P M + ++ + L + L R PT EIAE L + V
Sbjct: 257 IRQAVTRAIADQGRTIRVPVHMYEQINRLTRTSRQLVQELGRDPTTEEIAEELGVSPRKV 316
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ ++ P+SL+ V + + D I D P +QL+++ + E+ Q+L+ R
Sbjct: 317 EHIMRVSQRPLSLEMPVGEEEDSYLGDFIEDEDADAPGEAAGQQLLREVIDEIFQSLTPR 376
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E IL+L FGL + +E+G+ ++RERIRQI AL++L+ + L+ Y+
Sbjct: 377 EVRILQLRFGLVDGYCYTLEEVGKKFGVTRERIRQIEAQALSRLRHPSRSRKLRDYL 433
>gi|374814085|ref|ZP_09717822.1| RNA polymerase sigma factor RpoD [Treponema primitia ZAS-1]
Length = 352
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 144/232 (62%), Gaps = 4/232 (1%)
Query: 146 IIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQA 205
+I S LVVSIA YQ +GLSL DLI EG+IGL+ +RF+ RG + STY WWI+QA
Sbjct: 120 MINSNLRLVVSIAKNYQHRGLSLLDLIDEGNIGLIEAVERFDYTRGCRFSTYGTWWIRQA 179
Query: 206 IIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAI 265
II++IA+K R IR+P M + K L++ L R P+D E++E L + ++ V+ +
Sbjct: 180 IIKSIADKGRVIRIPIHMLNTIKKCYFVAKQLTQDLGRDPSDEELSEYLGVPINKVKEIV 239
Query: 266 ERTRHPISLDGAVTDRGCMTMQDIIPGPDETM--PERMVQKQLMKQELKELLQTLSEREA 323
+ ++ SLD V D + D+I D+TM P MV +++ ++++L LSERE
Sbjct: 240 KLSQETTSLDTIVDDGNLTRLADLI--KDDTMQEPFEMVFSMTLQETMEDILSYLSEREM 297
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLK 375
I++L FGL G+ P++ +E G+LL ++RER+RQI+ A KL+ L LK
Sbjct: 298 KIIQLRFGLAGEGPLTLEETGKLLGITRERVRQIQEKATFKLRNLKQLQELK 349
>gi|184155321|ref|YP_001843661.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum IFO 3956]
gi|227514580|ref|ZP_03944629.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
fermentum ATCC 14931]
gi|260662165|ref|ZP_05863061.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum 28-3-CHN]
gi|183226665|dbj|BAG27181.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum IFO 3956]
gi|227086991|gb|EEI22303.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
fermentum ATCC 14931]
gi|260553548|gb|EEX26440.1| RNA polymerase sigma factor RpoD [Lactobacillus fermentum 28-3-CHN]
Length = 380
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 138/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI RAIA+
Sbjct: 154 LVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIAD 213
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R P EI +++ VR ++ ++ P+
Sbjct: 214 QARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMDTQKVRDILKISQEPV 273
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I D T P ++MK++L+ +L TL++RE ++LRL FGL
Sbjct: 274 SLETPIGEEDDSHLGDFIEDHDATSPADHAAYEMMKKQLENVLDTLTDREENVLRLRFGL 333
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +E+GR+ ++RERIRQI AL KL+ + LK ++
Sbjct: 334 DDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
>gi|434389143|ref|YP_007099754.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428020133|gb|AFY96227.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 422
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 144/237 (60%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DLIQEG++GL R +F+P +GY+ STY YWW
Sbjct: 183 AKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTMGLERAVDKFDPTKGYRFSTYAYWW 242
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SR IRLP + + KI + LS R P E+A+ L++ + +
Sbjct: 243 IRQGITRAIATQSRNIRLPVHITEKLNKIKKVQRELSIETGRPPRLEEVAKALDMTLVQL 302
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ + R +SLD V + D++ DE PE+M+ ++ ++ EL +LL L++R
Sbjct: 303 QEVLMRVPRSVSLDVKVGKDRDTELGDLLEA-DEVTPEQMMMRESLQGELVQLLADLTDR 361
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +++ L FGL S +IGR+L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 362 EREVICLRFGLGYNQAHSLADIGRVLELSRERVRQIESKALQKLRQPKRRNRVRDYL 418
>gi|427390144|ref|ZP_18884550.1| RNA polymerase sigma factor RpoD [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425733159|gb|EKU95965.1| RNA polymerase sigma factor RpoD [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 585
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 159/266 (59%), Gaps = 6/266 (2%)
Query: 115 ESDFLDKENGELDYNLVKYKILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQ 173
E DF +E+ + + +I+ ++ R ++ ++ + LVVS+A Y G+G+ DLIQ
Sbjct: 323 EGDFDPQEDRRY---MRELRIIARDGRSAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQ 379
Query: 174 EGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEA 233
EG++GL+R ++F+ +GYK STY WWI+QAI RA+A++SRTIR+P M ++ K+A
Sbjct: 380 EGNLGLVRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQSRTIRIPVHMVEVINKLARV 439
Query: 234 NNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGP 293
+ + L R PT E+A L++ V R PISL + + G D+I
Sbjct: 440 QRQMLQDLGREPTTEELAHELDMTEEKVVEVQRYGREPISLHTPLGEDGDSEFGDLIEDS 499
Query: 294 DETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRE 352
+ P+ V L+K++L+++L TLSEREA ++ + FGL DGQ P + EIG++ ++RE
Sbjct: 500 EAVHPDDAVGFTLLKEQLQQVLDTLSEREAGVVSMRFGLTDGQ-PKTLDEIGKVYGVTRE 558
Query: 353 RIRQIRGIALTKLQQTNILNNLKVYM 378
RIRQI ++KL+ + L+ Y+
Sbjct: 559 RIRQIESKTMSKLRHPSRSQVLRDYL 584
>gi|225575013|ref|ZP_03783623.1| hypothetical protein RUMHYD_03093 [Blautia hydrogenotrophica DSM
10507]
gi|225037764|gb|EEG48010.1| RNA polymerase sigma factor RpoD [Blautia hydrogenotrophica DSM
10507]
Length = 374
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 148/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ ++++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 134 DEDAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYKFSTYA 193
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA+ + + V
Sbjct: 194 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKEMEMSV 253
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ ++ P+SL+ + + + D I + +P L+K++L E+L TL
Sbjct: 254 DRVREILKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPADAAAFTLLKEQLVEVLSTL 313
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE +LRL FGLD + +E+G+ +++RERIRQI AL KL+ + LK Y+
Sbjct: 314 TDREQKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLKDYL 373
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 151/238 (63%), Gaps = 5/238 (2%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ +++ + LVVS+A Y + + L DLIQEGSIG+ RG ++F+P +GY+ STY YWW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA K+RTIRLP + + KI +A LS+RL R PT E+A L + V
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGELANELELTPKQV 216
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R +E+ R P+SLD + D + +++ P + PE V + + +L+ L++ L+ +
Sbjct: 217 REYLEKARLPLSLDLRLGDNYDTELGEMLEDPGAS-PEDFVMQSSLSNDLEVLMEQLTPQ 275
Query: 322 EADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ +++ L FGL DGQ ++ IG +L++SRER+RQI ALTKL+++ N+ Y+
Sbjct: 276 QKEVITLRFGLIDGQA-LTLARIGEILNISRERVRQIEREALTKLRKSKA--NMGEYL 330
>gi|300858635|ref|YP_003783618.1| RNA polymerase sigma factor B [Corynebacterium pseudotuberculosis
FRC41]
gi|375288814|ref|YP_005123355.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 3/99-5]
gi|379715514|ref|YP_005303851.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 316]
gi|383314397|ref|YP_005375252.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis P54B96]
gi|384504818|ref|YP_005681488.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1002]
gi|384506912|ref|YP_005683581.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis C231]
gi|384508999|ref|YP_005685667.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis I19]
gi|384511091|ref|YP_005690669.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis PAT10]
gi|385807697|ref|YP_005844094.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 267]
gi|386740547|ref|YP_006213727.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 31]
gi|387136741|ref|YP_005692721.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 42/02-A]
gi|387138813|ref|YP_005694792.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|387140805|ref|YP_005696783.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1/06-A]
gi|389850565|ref|YP_006352800.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 258]
gi|300686089|gb|ADK29011.1| RNA polymerase sigma factor B [Corynebacterium pseudotuberculosis
FRC41]
gi|302206344|gb|ADL10686.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis C231]
gi|302330901|gb|ADL21095.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1002]
gi|308276586|gb|ADO26485.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis I19]
gi|341825030|gb|AEK92551.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis PAT10]
gi|348607186|gb|AEP70459.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 42/02-A]
gi|349735291|gb|AEQ06769.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|355392596|gb|AER69261.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 1/06-A]
gi|371576103|gb|AEX39706.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 3/99-5]
gi|377654220|gb|AFB72569.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 316]
gi|380869898|gb|AFF22372.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis P54B96]
gi|383805090|gb|AFH52169.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 267]
gi|384477241|gb|AFH91037.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 31]
gi|388247871|gb|AFK16862.1| RNA polymerase sigma factor sigB [Corynebacterium
pseudotuberculosis 258]
Length = 329
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 146/247 (59%), Gaps = 1/247 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
K+L K+ R+++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+
Sbjct: 83 KVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGF 142
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + + L R T+ E+AE
Sbjct: 143 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAE 202
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I S + + + ++R P+SLD V + D I + T E V L +++
Sbjct: 203 ESGIDESKIEILLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHSDIR 262
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TL RE D++R+ +GLD P + +IGR LSRER+RQI +TKL+ +
Sbjct: 263 SVLDTLERREQDVIRMRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMTKLRDGARAD 322
Query: 373 NLKVYMV 379
L+ Y +
Sbjct: 323 KLRAYAI 329
>gi|226366207|ref|YP_002783990.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|424852224|ref|ZP_18276621.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|226244697|dbj|BAH55045.1| RNA polymerase sigma factor SigB [Rhodococcus opacus B4]
gi|254553060|dbj|BAH85842.1| RNA polymerase sigma B factor [Rhodococcus opacus]
gi|356666889|gb|EHI46960.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 323
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 135/225 (60%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 97 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMAD 156
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A L ++L R TD E+AE I + ++ +R P+
Sbjct: 157 QSRTIRLPVHLVEQVNKLARIKRELHQQLGREATDDELAEESGIPAHKIADLLDHSRDPV 216
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + + D I + T E V L+ +++ +L TL ERE ++RL +GL
Sbjct: 217 SLDMPVGNDEEAPLGDFIEDSEATSAENAVIAGLLHSDVRTVLATLDEREQQVIRLRYGL 276
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI + KL+Q + L+ Y
Sbjct: 277 DDGQPRTLDQIGKLFGLSRERVRQIEREVMGKLRQGDRAERLRSY 321
>gi|374307576|ref|YP_005054007.1| RNA polymerase sigma factor RpoD [Filifactor alocis ATCC 35896]
gi|291166412|gb|EFE28458.1| RNA polymerase sigma factor RpoD [Filifactor alocis ATCC 35896]
Length = 372
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 146/237 (61%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++++++ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 135 AKKKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWW 194
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI++++++ V +
Sbjct: 195 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPRPEEISKVMDMSVEKI 254
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + ++ P+SL+ + + + D IP D P L+K++L+E+L TL+ER
Sbjct: 255 REIQKISQEPVSLETPIGEEEDSHLGDFIPDDDALAPSEAAAYSLLKEQLEEVLSTLNER 314
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E +L+L FGL+ + +E+G+ ++RERIRQI AL KL+ + LK Y+
Sbjct: 315 EQKVLKLRFGLEDGRTRTLEEVGKEFDVTRERIRQIEAKALRKLRHPSRSKKLKDYL 371
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 147/228 (64%), Gaps = 3/228 (1%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ +++ + LVVS+A Y + + L DLIQEGSIG+ RG ++F+P +GY+ STY YWW
Sbjct: 97 AKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWW 156
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA K+RTIRLP + + KI +A LS+RL R PT E+A L + V
Sbjct: 157 IRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQRLGRAPTAGELANELELTPKQV 216
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R +E+ R P+SLD + D + +++ P + PE V + + +L+ L++ L+ +
Sbjct: 217 REYLEKARLPLSLDLRLGDNYDTELGEMLEDPGAS-PEDFVMQSSLSNDLEVLMEQLTPQ 275
Query: 322 EADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368
+ +++ L FGL DGQ ++ IG +L++SRER+RQI ALTKL+++
Sbjct: 276 QKEVITLRFGLIDGQA-LTLARIGEILNISRERVRQIEREALTKLRKS 322
>gi|404446700|ref|ZP_11011803.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
gi|403650063|gb|EJZ05350.1| RNA polymerase sigma factor SigB [Mycobacterium vaccae ATCC 25954]
Length = 319
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 133/225 (59%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 93 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGMAD 152
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A + + L R TD E+AE I V + +E +R P+
Sbjct: 153 QSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRDPV 212
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + D I + E V +L+ +++ +L TL ERE ++RL FGL
Sbjct: 213 SLDMPVGSDEEAPLGDFIEDAEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGL 272
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI + KL+ + L+ Y
Sbjct: 273 DDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 145/227 (63%), Gaps = 5/227 (2%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y + L L DLIQEG+IG+ RG ++F+P +GY+ STY YWWI+QAI RAIA
Sbjct: 94 LVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAE 153
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
KSRTIRLP + + KI +A LS++ R T +E+AE L++ VR +ER R P+
Sbjct: 154 KSRTIRLPIHITEKLNKIKKAQRELSQQKGRAATVTELAEELDLTPKQVREYLERARQPL 213
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFG- 331
SLD V D + D++ D PE ++ +L+ L++ L+ ++ +++ L FG
Sbjct: 214 SLDLRVGDNQDTELGDLLED-DGQSPEDFATHSSLQFDLERLMEDLTSQQKEVIALRFGL 272
Query: 332 LDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
LDGQ P++ +IG L++SRER+RQI AL+KL++ N++ Y+
Sbjct: 273 LDGQ-PLTLAKIGSRLNISRERVRQIEREALSKLRKRKA--NIQEYL 316
>gi|443313785|ref|ZP_21043395.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442776198|gb|ELR86481.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 440
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 142/237 (59%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YWW
Sbjct: 201 AKEHMIQANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYWW 260
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP + + KI + +++ R PT EIA L I +
Sbjct: 261 IRQGITRAIATQSRTIRLPVHITEKLNKIKKVQRKIAQEKGRTPTIEEIAAELEITPKQL 320
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + R +SL+ V + D++ D PE ++ ++ ++++L+ LL LS+R
Sbjct: 321 RDVLLRVPRSVSLETKVGKDKDTELGDLLE-TDTISPEDVLMRESLQRDLQYLLTDLSDR 379
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D++ + FGL S EIGR L LSRER+RQI AL KL+Q N ++ Y
Sbjct: 380 ERDVILMRFGLGDGHAYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNRVRDYF 436
>gi|366053198|ref|ZP_09450920.1| RNA polymerase sigma factor RpoD [Lactobacillus suebicus KCTC 3549]
Length = 381
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 138/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WWI+QAI RAIA+
Sbjct: 155 LVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFKFSTYATWWIRQAITRAIAD 214
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R PT EI +++ VR ++ + P+
Sbjct: 215 QARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAEMDMPTEKVREILKIAQEPV 274
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I D T P +L+K++L+ +L TL++RE ++LRL FGL
Sbjct: 275 SLETPIGEEDDSHLGDFIEDQDATSPADHAAYELLKEQLENVLDTLTDREENVLRLRFGL 334
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 335 DDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 380
>gi|441521275|ref|ZP_21002936.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
gi|441459107|dbj|GAC60897.1| RNA polymerase sigma factor SigB [Gordonia sihwensis NBRC 108236]
Length = 332
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 145/246 (58%), Gaps = 1/246 (0%)
Query: 133 YKILCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
Y IL +E E ++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G
Sbjct: 85 YAILVREGEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKG 144
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
YK STY WWI+QAI R +A++SRTIRLP + V K+A L ++L R TD E+A
Sbjct: 145 YKFSTYATWWIRQAISRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDEELA 204
Query: 252 EMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQEL 311
I + ++ +R P+SLD V + + D I + T E +V L+ ++
Sbjct: 205 LESGIPAEKIADLMDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAETVVIANLLHSDI 264
Query: 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
+ +L TL ERE ++ + +GL+ P + +IGR LSRER+RQI +TKL+Q +
Sbjct: 265 RSVLSTLDEREMQVITMRYGLEDGQPRTLDQIGRAFGLSRERVRQIEREVMTKLRQGDRA 324
Query: 372 NNLKVY 377
L+ Y
Sbjct: 325 EKLRAY 330
>gi|299535819|ref|ZP_07049140.1| RNA polymerase sigma factor [Lysinibacillus fusiformis ZC1]
gi|424735380|ref|ZP_18163844.1| RNA polymerase sigma factor [Lysinibacillus fusiformis ZB2]
gi|298729019|gb|EFI69573.1| RNA polymerase sigma factor [Lysinibacillus fusiformis ZC1]
gi|422950582|gb|EKU44950.1| RNA polymerase sigma factor [Lysinibacillus fusiformis ZB2]
Length = 375
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 156/264 (59%), Gaps = 6/264 (2%)
Query: 121 KENGELDYNLVKYKILCKER------ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQE 174
KE G +D + +I ER E+++R+ + LVVSIA Y G+G+ DLIQE
Sbjct: 111 KEIGRVDLLSAEQEIALAERIEQGDEEARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQE 170
Query: 175 GSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEAN 234
G++GL++ ++F+ +G+K STY WWI+QAI RAIA+++RTIR+P M + K+
Sbjct: 171 GNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQ 230
Query: 235 NVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPD 294
L + L R P+ EI E +++ VR ++ + P+SL+ + + + D I +
Sbjct: 231 RQLLQDLGREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSE 290
Query: 295 ETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERI 354
P +L+K++L+++L TL++RE ++LRL FGLD + +E+G++ ++RERI
Sbjct: 291 AQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 350
Query: 355 RQIRGIALTKLQQTNILNNLKVYM 378
RQI AL KL+ + LK ++
Sbjct: 351 RQIEAKALRKLRHPSRSKRLKDFL 374
>gi|26665386|dbj|BAC44904.1| principal sigma factor [Fischerella major NIES-592]
Length = 203
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 135/204 (66%), Gaps = 1/204 (0%)
Query: 147 IRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAI 206
++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WWI+QAI
Sbjct: 1 VQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAI 60
Query: 207 IRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIE 266
RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + + +R ++
Sbjct: 61 TRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIVK 120
Query: 267 RTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADIL 326
+ PISL+ + + D I ET PE V K L++++L+++L +LS RE D+L
Sbjct: 121 SAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLSPRERDVL 179
Query: 327 RLHFGLDGQTPVSCKEIGRLLSLS 350
RL +GLD + +EIG++ +++
Sbjct: 180 RLRYGLDDGRMKTLEEIGQIFNVT 203
>gi|337290933|ref|YP_004629954.1| RNA polymerase sigma factor B [Corynebacterium ulcerans BR-AD22]
gi|334699239|gb|AEG84035.1| RNA polymerase sigma factor B [Corynebacterium ulcerans BR-AD22]
Length = 329
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/247 (37%), Positives = 147/247 (59%), Gaps = 1/247 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
K+L K+ R+++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+
Sbjct: 83 KVLVKDGRKARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGF 142
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + + L R T+ E+AE
Sbjct: 143 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQHLGREATNEELAE 202
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I S + L + ++R P+SLD V + D I + T E V L +++
Sbjct: 203 ESGIDESKIELLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHSDIR 262
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TL +RE D++R+ +GL+ P + +IGR LSRER+RQI +TKL+ +
Sbjct: 263 SVLDTLEQREQDVIRMRYGLEDGVPRTLDQIGRQFGLSRERVRQIEREVMTKLRDGARAD 322
Query: 373 NLKVYMV 379
L+ Y +
Sbjct: 323 KLRAYAI 329
>gi|134098366|ref|YP_001104027.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|291006932|ref|ZP_06564905.1| RNA polymerase sigma factor SigB [Saccharopolyspora erythraea NRRL
2338]
gi|133910989|emb|CAM01102.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
Length = 324
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/225 (39%), Positives = 134/225 (59%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 98 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRGMAD 157
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V KIA L ++L R TD E+A + V V ++ +R P+
Sbjct: 158 QSRTIRLPVHLVEQVNKIARIKRDLHQKLGREATDEELANEAGLTVEKVADLLDHSRDPV 217
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + D I + E V ++ +L+ +L TL ERE ++R+ +GL
Sbjct: 218 SLDMPVGAEEDAPLGDFIEDAESADAENAVISGFLQDDLRRVLSTLEEREQAVIRMRYGL 277
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+ LSRER+RQI ++KL+Q + + L+ Y
Sbjct: 278 DDGQPRTLDQIGKAFGLSRERVRQIEREVMSKLRQGDRADKLRAY 322
>gi|393201582|ref|YP_006463424.1| DNA-directed RNA polymerase, sigma subunit [Solibacillus silvestris
StLB046]
gi|406664445|ref|ZP_11072220.1| Sigma-A [Bacillus isronensis B3W22]
gi|327440913|dbj|BAK17278.1| DNA-directed RNA polymerase, sigma subunit [Solibacillus silvestris
StLB046]
gi|405387293|gb|EKB46717.1| Sigma-A [Bacillus isronensis B3W22]
Length = 375
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 155/264 (58%), Gaps = 6/264 (2%)
Query: 121 KENGELDYNLVKYKILCKER------ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQE 174
KE G +D +I ER E+++R+ + LVVSIA Y G+G+ DLIQE
Sbjct: 111 KEIGRVDLLSADQEIRLAERIEQGDEEARKRLAEANLRLVVSIAKRYVGRGMLFLDLIQE 170
Query: 175 GSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEAN 234
G++GL++ ++F+ +G+K STY WWI+QAI RAIA+++RTIR+P M + K+
Sbjct: 171 GNMGLIKAVEKFDHRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQ 230
Query: 235 NVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPD 294
L + L R P+ EI E +++ VR ++ + P+SL+ + + + D I +
Sbjct: 231 RQLLQDLGREPSPEEIGEEMDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSE 290
Query: 295 ETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERI 354
P +L+K++L+++L TL++RE ++LRL FGLD + +E+G++ ++RERI
Sbjct: 291 AQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERI 350
Query: 355 RQIRGIALTKLQQTNILNNLKVYM 378
RQI AL KL+ + LK ++
Sbjct: 351 RQIEAKALRKLRHPSRSKRLKDFL 374
>gi|283779933|ref|YP_003370688.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pirellula staleyi
DSM 6068]
gi|283438386|gb|ADB16828.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pirellula staleyi
DSM 6068]
Length = 545
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 129/215 (60%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y+ +GLS DLIQEG+ GL+R +F RGYK STY WWI+QAI RAIA+
Sbjct: 303 LVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKFEYARGYKFSTYATWWIRQAITRAIAD 362
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIR+P M ++K+ L + L R PT E+A + + + R ++ R P+
Sbjct: 363 QSRTIRVPVHMIDTMSKVRAVTRQLVQELGREPTPEEVARVAGLTLDDARCVLKMARQPL 422
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V D + + E P +Q +K +++E +Q L+ RE +ILRL +GL
Sbjct: 423 SLDQPVGDHDDSYFGEFLADHREEDPLYDTHQQALKHQIEEAMQGLNYREREILRLRYGL 482
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
+ +E+G++ S++RER+RQI A+ KLQQ
Sbjct: 483 TDGYAYTLEEVGKIFSVTRERVRQIETKAVRKLQQ 517
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 145/238 (60%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
++++ +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P RGY+ STY YW
Sbjct: 169 QAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYSYW 228
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA +SRTIRLP + + KI +A +S+ R T +IA L +
Sbjct: 229 WIRQGITRAIATQSRTIRLPVHITEKLNKIKKAQRKISQEKSRTATIDDIATELKMTPDQ 288
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
+R + R +SL+ V + D++ +E+ PE ++ ++ + +EL+ +L LS
Sbjct: 289 IREVLLRVPRSVSLETKVGTDKDTELGDLLE-TEESTPEELLMRESLYRELQHILADLSG 347
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+E ++++ +GL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 348 KERAVIQMRYGLGDGHPYSLAEIGRALDLSRERVRQIEAKALQKLRQPKRRNRVRDYL 405
>gi|375088649|ref|ZP_09734987.1| RNA polymerase sigma factor rpoD [Dolosigranulum pigrum ATCC 51524]
gi|374561614|gb|EHR32953.1| RNA polymerase sigma factor rpoD [Dolosigranulum pigrum ATCC 51524]
Length = 370
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 139/226 (61%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVSIA Y G+G+S DLIQEG++GL++ ++F+ ++G+K STY WWI+QAI RAIA+
Sbjct: 144 LVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYQKGFKFSTYATWWIRQAITRAIAD 203
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M + K+ L + L R PT EI +++ VR ++ ++ P+
Sbjct: 204 QARTIRIPVHMVETINKLVRIQRQLLQDLGREPTPEEIGAEMDLPTEKVRNILKVSQEPV 263
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SL+ + + + D I P +L+K ELK++L TL++RE ++LRL FGL
Sbjct: 264 SLETPIGEEDDSHLGDFIEDDHALSPSDNAAYELLKNELKDVLDTLTDREENVLRLRFGL 323
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D + +++G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 324 DDGRQRTLEDVGKVFDVTRERIRQIEAKALRKLRHPSRSKQLKDFL 369
>gi|126663248|ref|ZP_01734246.1| RNA polymerase sigma-70 factor [Flavobacteria bacterium BAL38]
gi|126624906|gb|EAZ95596.1| RNA polymerase sigma-70 factor [Flavobacteria bacterium BAL38]
Length = 287
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 157/245 (64%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I ++ + E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 RIKAGDQRALEKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + +L + R P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKMYALLEQSNERPPSAEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ V+ V+ +++ + +S+D + + + D++ + P+R + + ++ E++
Sbjct: 162 LDMTVNDVKESMKNSGRHLSMDAPLVEGEDSNLYDVLRSGESPNPDRELIHESLQTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 ALETLTPREADVVRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
>gi|124006216|ref|ZP_01691051.1| RpoD [Microscilla marina ATCC 23134]
gi|123988140|gb|EAY27798.1| RpoD [Microscilla marina ATCC 23134]
Length = 287
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 151/235 (64%)
Query: 144 ERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIK 203
E++ ++ VVS+A YQ +GLSL DLI EG++GL++ A+RF+ RG+K +Y WWI+
Sbjct: 52 EKLTKANLRFVVSVAKQYQNQGLSLGDLINEGNLGLIKAAQRFDETRGFKFISYAVWWIR 111
Query: 204 QAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRL 263
Q+I++A+A +SR +RLP + G + KI++ + L ++ R P+ E+AE+L++ S V
Sbjct: 112 QSILQALAEQSRIVRLPLNRVGSLNKISKTFSELEQKYEREPSPDELAEVLDVTTSEVVD 171
Query: 264 AIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA 323
++ + +S+D ++ D++ E P+ + +++E++ L TL++REA
Sbjct: 172 TLKISGRHVSMDAPFVQGEENSLLDVLENESEVKPDSELMNDSLRKEVQRALSTLTQREA 231
Query: 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
D++ L+FGL+G+ ++ +EIG +L+RER+RQI+ A+ +L+ T+ LK Y+
Sbjct: 232 DVITLYFGLNGEHAMTLEEIGEKFNLTRERVRQIKEKAIRRLRHTSRSKALKPYL 286
>gi|379014769|ref|YP_005291005.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus VC40]
gi|374363466|gb|AEZ37571.1| RNA polymerase sigma factor RpoD [Staphylococcus aureus subsp.
aureus VC40]
Length = 368
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 143/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWW 190
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIAN++RTIR+P M + K+ L + L R P EI E +++ V
Sbjct: 191 IRQAITRAIANQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKV 250
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D I + P +L+K++L+++L TL++R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDR 310
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>gi|334133805|ref|ZP_08507347.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF7]
gi|333608654|gb|EGL19944.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF7]
Length = 374
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 129 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHTKGYK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA+
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAKE 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + VR ++ + P+SL+ + + + D I + P +L+K++L++
Sbjct: 249 MELSTDKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADAAAYELLKEQLED 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL+ERE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 309 VLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 368
Query: 374 LKVYM 378
LK ++
Sbjct: 369 LKDFL 373
>gi|260893571|ref|YP_003239668.1| RpoD subfamily RNA polymerase sigma-70 subunit [Ammonifex degensii
KC4]
gi|260865712|gb|ACX52818.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ammonifex
degensii KC4]
Length = 369
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 142/238 (59%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++ R+I + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY W
Sbjct: 131 EAKRRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDWRKGYKFSTYATW 190
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIAE + I
Sbjct: 191 WIRQAITRAIADQARTIRIPVHMVETINKLVRVSRQLVQELGREPTPEEIAEKMGISPEK 250
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I + P L++++L E+LQ+L+
Sbjct: 251 VREIMKVAQEPVSLETPIGEEEDSHLGDFIEDQEAQAPAEEASYALLREQLNEVLQSLTP 310
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LRL FGLD + +E+G+ ++RERIRQI L KL+ + LK Y+
Sbjct: 311 REQKVLRLRFGLDDGRARTLEEVGQKFGVTRERIRQIEAKTLRKLRHPSRSKKLKDYL 368
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 150/245 (61%), Gaps = 3/245 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ + + + +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 84 QTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 143
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY YWWI+QAI RAIA + RTIRLP + + KI + L++ L R PT +EIA+
Sbjct: 144 FSTYAYWWIRQAITRAIAQQGRTIRLPIHITEKLNKIKKVQRELAQTLGRSPTPAEIAKE 203
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L + + +R + R P+SLD V D +Q+++ D PE ++ ++Q+L
Sbjct: 204 LELEPAQIREYLNMARQPVSLDVRVGDNQDTELQEMLED-DGPSPEYYTTQEFLRQDLNT 262
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL L+ ++ +++ L FGL+ +S ++G L+LSRER+RQ+ AL L++ N
Sbjct: 263 LLAELTPQQREVVALRFGLEDGNELSLAKVGERLNLSRERVRQLEHQALAHLRRRRA--N 320
Query: 374 LKVYM 378
+K Y+
Sbjct: 321 VKEYV 325
>gi|332799075|ref|YP_004460574.1| RpoD subfamily RNA polymerase sigma-70 [Tepidanaerobacter
acetatoxydans Re1]
gi|438002181|ref|YP_007271924.1| RNA polymerase sigma factor RpoD [Tepidanaerobacter acetatoxydans
Re1]
gi|332696810|gb|AEE91267.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tepidanaerobacter
acetatoxydans Re1]
gi|432178975|emb|CCP25948.1| RNA polymerase sigma factor RpoD [Tepidanaerobacter acetatoxydans
Re1]
Length = 374
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
++E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ ++GYK STY
Sbjct: 134 DKEAKRRLAEANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLMKAVEKFDYKKGYKFSTYA 193
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EIAE + + V
Sbjct: 194 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQELGRDPLPEEIAEEMELPV 253
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL + + + D IP + P L+K++L+++L+TL
Sbjct: 254 EKVREIMKIAQEPVSLATPIGEEEDSFLGDFIPDDEALAPADAAAYLLLKEQLEDVLETL 313
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE +LRL FGLD P + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 314 TPREEKVLRLRFGLDDGRPRTLEEVGQVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 373
>gi|212715646|ref|ZP_03323774.1| hypothetical protein BIFCAT_00546 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661013|gb|EEB21588.1| hypothetical protein BIFCAT_00546 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 448
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 159/263 (60%), Gaps = 2/263 (0%)
Query: 118 FLDKENGELDYNLVK-YKILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEG 175
LD E+ ++D+ + K + R +++ ++ + LVVS+A Y G+G+ DLIQEG
Sbjct: 184 LLDTESDQMDFKRKRELKWAANDGRRAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEG 243
Query: 176 SIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANN 235
++GL+R ++F+ ++G+K STY WWI+QAI RA+A+++RTIR+P M ++ K++
Sbjct: 244 NLGLIRAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQR 303
Query: 236 VLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDE 295
+ + L R PT E+A L++ V V+ + R PISL + + G D+I D
Sbjct: 304 QMLQDLGREPTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDA 363
Query: 296 TMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIR 355
P V L++++ +++L+TLS REA ++++ +GL+ P + +IGR+ ++RERIR
Sbjct: 364 IAPSDAVAFSLLQEQFRQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIR 423
Query: 356 QIRGIALTKLQQTNILNNLKVYM 378
QI ++KL+ + L+ ++
Sbjct: 424 QIESKTMSKLRHPSRSQTLRDFL 446
>gi|406993818|gb|EKE12911.1| hypothetical protein ACD_13C00122G0001 [uncultured bacterium]
Length = 359
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/240 (40%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+R +++++ S LVVSIA Y G+GLSL DLIQEG+ GL+R ++++ +G+K STY
Sbjct: 119 DRRAKDKLTESNLRLVVSIAKKYIGRGLSLLDLIQEGNQGLIRAVEKYDWRKGFKFSTYA 178
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + KI + L + L R PT EI E L +
Sbjct: 179 TWWIRQAITRAIADQARTIRIPVHMVETINKIYRTSRRLMQELGREPTPEEIGEELEMEG 238
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+R + + SL+ V + + D IP + P KQL+K L+E+L TL
Sbjct: 239 DRIREIFKIAQETTSLEAPVGEDQESFLGDFIPDENTLSPVDQASKQLLKDHLEEVLGTL 298
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
SEREA +L+L FGL+G ++ +E+G++ ++RERIRQI AL KL+ + L+ Y+
Sbjct: 299 SEREAKVLKLRFGLEGSKAMTLEEVGKVFGVTRERIRQIEAKALRKLKHPSRRKKLQDYL 358
>gi|227529171|ref|ZP_03959220.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
vaginalis ATCC 49540]
gi|227350896|gb|EEJ41187.1| DNA-directed RNA polymerase sigma subunit RpoD [Lactobacillus
vaginalis ATCC 49540]
Length = 380
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 144/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++ + + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ RG+K STY
Sbjct: 140 DEEAKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYA 199
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P EI +++
Sbjct: 200 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPLPEEIGAEMDMPT 259
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D T P ++MK++L+ +L TL
Sbjct: 260 EKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTL 319
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 320 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 379
>gi|163846411|ref|YP_001634455.1| sigma-70 family RNA polymerase sigma factor [Chloroflexus
aurantiacus J-10-fl]
gi|222524178|ref|YP_002568649.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus sp.
Y-400-fl]
gi|163667700|gb|ABY34066.1| RNA polymerase sigma factor, sigma-70 family [Chloroflexus
aurantiacus J-10-fl]
gi|222448057|gb|ACM52323.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus sp.
Y-400-fl]
Length = 313
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 148/238 (62%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++ ++I S LVVSIA YQG GLSL DLIQEGS+GL+R +F+ RG K STY +
Sbjct: 73 QARAQLINSNLRLVVSIARRYQGHGLSLLDLIQEGSVGLMRAVDKFDASRGLKFSTYATY 132
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q+I RAIA+ SRT+RLP + +++++ LS++L R PT E+A+ + V
Sbjct: 133 WIRQSIGRAIADHSRTVRLPVHLGERLSRLSRLRQELSQQLDREPTLEELAQAAGLSVEQ 192
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
V A + P SLD T+ G + +I+ P + P V + +++ +++ LQ LS
Sbjct: 193 VERAEQAGLAPTSLDEPHTEDGGGALAEILTDPLQPTPFDEVSESMLQADVQHALQQLSP 252
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE ILRL +GLDG+ + ++IG+ L L+RER+RQ+ AL KL+ ++ L+ Y+
Sbjct: 253 RERSILRLRYGLDGEPMHTLEQIGQRLRLTRERVRQLEHEALRKLRDPSLHPQLQGYV 310
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 142/231 (61%), Gaps = 1/231 (0%)
Query: 135 ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
++ K + +++++I + LVV+IA YQ + + DLIQEG++GL RG ++F+P RGYK
Sbjct: 88 LIRKGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPIRGYKF 147
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY YWWI+QAI RAIA ++RTIRLP + + KI + L++ L R P EIAE L
Sbjct: 148 STYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKVQRELAQTLGRSPNAVEIAEAL 207
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+ + +R + R P+SLD V D +QD++ D PE + ++ ++Q+L L
Sbjct: 208 ELEPAQIREYLNLARQPVSLDVRVGDNQDTELQDLLED-DGISPENYMTQESLRQDLDTL 266
Query: 315 LQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
L L+ ++ ++L L FGL +S ++G L+LSRER+RQ+ AL L
Sbjct: 267 LSELTPQQREVLNLRFGLQDGNELSLAKVGERLNLSRERVRQLEHQALAHL 317
>gi|1519632|gb|AAC44890.1| sigma 70-type sigma factor SigA [Heliobacillus mobilis]
Length = 333
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 144/240 (60%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK STY
Sbjct: 93 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYA 152
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ + L + R P EIA+ ++I V
Sbjct: 153 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEFGREPNPEEIAKEMDIPV 212
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P L+K++L+E+L+TL
Sbjct: 213 DRVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPAEAASFILLKEQLEEVLETL 272
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ RE +LRL FGLD + +E+G+ ++RERIRQI AL KL+ + LK Y+
Sbjct: 273 TAREMKVLRLRFGLDDGRSRTLEEVGQEFGVTRERIRQIEAKALRKLRHPSRSKKLKDYV 332
>gi|386346165|ref|YP_006044414.1| RpoD subfamily RNA polymerase sigma-70 subunit [Spirochaeta
thermophila DSM 6578]
gi|339411132|gb|AEJ60697.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Spirochaeta
thermophila DSM 6578]
Length = 292
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 151/241 (62%), Gaps = 1/241 (0%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+++++E+++ + VV++A YQ +GL L DLI EG+IGLL +RF+P++GY +Y
Sbjct: 50 DQDAKEKLVTANLRFVVNVAKKYQNQGLPLADLISEGNIGLLNAIERFDPDKGYHFISYA 109
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI++AI+ KSR IRLP + A + +I +A ++ ++AE L+
Sbjct: 110 VWWIRQAILKAISEKSRMIRLPLNRANELVQIEKARKLVQTESGEHNEIKKVAETLDYDE 169
Query: 259 STVRLAIERTRHPISLDGAV-TDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQT 317
V + ++ +SLD V DR + D + PE +V ++ +++E++E+L T
Sbjct: 170 DHVANLLNLSKEYVSLDTPVYEDRDSAMLGDYLKDEASRPPEDVVLEKTLQEEIQEVLAT 229
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
L+E+EA+I++ FGL+G+ P+S KEIG + +L++ERIRQI AL K+QQ+ L+ Y
Sbjct: 230 LTEKEAEIIQYRFGLNGRHPMSLKEIGDMYNLTKERIRQIEKKALKKIQQSEKAKVLETY 289
Query: 378 M 378
+
Sbjct: 290 L 290
>gi|91070600|gb|ABE11500.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[uncultured Prochlorococcus marinus clone HOT0M-8F9]
Length = 340
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 146/239 (61%), Gaps = 4/239 (1%)
Query: 129 NLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
NL + KI ++S++R++ + LVVS+A YQ +GL L DL+QEG+IGL R +F+P
Sbjct: 96 NLYQIKI---GKKSRDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAIGLERAVDKFDP 152
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
GYK STY YWWI+Q + RAI N +RTIRLP ++ ++K+ + LS + R PT
Sbjct: 153 AMGYKFSTYAYWWIRQGMTRAIDNSARTIRLPIHISEKLSKMRRVSRELSHKFGRQPTRL 212
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDG-AVTDRGCMTMQDIIPGPDETMPERMVQKQLM 307
E+A + I + I ++ SLD A + T+ ++IP P+ P + + +
Sbjct: 213 EMATEMGIDQKDLEDLISQSAPCASLDAHARGEEDRSTLGELIPDPNCEEPMEGMDRTIQ 272
Query: 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
K+ L L L+ERE I++L FGLDG+ P++ EIGR +++SRER+RQ+ A+ KL+
Sbjct: 273 KEHLGTWLSQLNEREQKIMKLRFGLDGEEPLTLAEIGRQINVSRERVRQLEAKAILKLR 331
>gi|345022115|ref|ZP_08785728.1| RNA polymerase sigma factor RpoD [Ornithinibacillus scapharcae
TW25]
Length = 373
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 133 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYA 192
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI E +++
Sbjct: 193 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIGEEMDLTP 252
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I + P +L+K++L+++L TL
Sbjct: 253 DKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAISPSDHAAYELLKEQLEDVLDTL 312
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 313 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
>gi|262371919|ref|ZP_06065198.1| RNA polymerase sigma factor sigma-70 [Acinetobacter junii SH205]
gi|262311944|gb|EEY93029.1| RNA polymerase sigma factor sigma-70 [Acinetobacter junii SH205]
Length = 627
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 151/262 (57%), Gaps = 8/262 (3%)
Query: 125 ELDYNLVKYKIL--------CKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGS 176
ELD N+ + K + K R +++ ++ + LV+SIA Y +GL DLIQEG+
Sbjct: 363 ELDLNVKEIKDISKRMAVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN 422
Query: 177 IGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNV 236
IGL++ +F RGYK STY WWI+QAI R+IA+++RTIR+P M + KI +
Sbjct: 423 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRVSRQ 482
Query: 237 LSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDET 296
L + + R PT E+ E L + VR ++ + PIS++ + D + D I + T
Sbjct: 483 LLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSNIT 542
Query: 297 MPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQ 356
P + +K+ +E+L+ L+EREA +L++ FG+D T + +E+G+ ++RERIRQ
Sbjct: 543 SPVDAATSEGLKEATREVLENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQ 602
Query: 357 IRGIALTKLQQTNILNNLKVYM 378
I AL KL+ + +L+ ++
Sbjct: 603 IEAKALRKLRHPSRSEHLRSFL 624
>gi|238916620|ref|YP_002930137.1| RNA polymerase primary sigma factor [Eubacterium eligens ATCC
27750]
gi|238871980|gb|ACR71690.1| RNA polymerase primary sigma factor [Eubacterium eligens ATCC
27750]
Length = 434
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++++ +G+K STY
Sbjct: 194 DEEAKKRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKYDYRKGFKFSTYA 253
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EIAE ++I V
Sbjct: 254 TWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQLLQELGREPSPEEIAENMDIPV 313
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR + ++ P+SL+ + + + D I + +P L+K++L E+L TL
Sbjct: 314 ERVREIQKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEAAASTLLKEQLVEVLGTL 373
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ERE +LRL FG+D + +E+G+ +++RERIRQI AL KL+ + L+ Y+
Sbjct: 374 TEREQKVLRLRFGMDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSRKLRDYL 433
>gi|218282286|ref|ZP_03488585.1| hypothetical protein EUBIFOR_01167 [Eubacterium biforme DSM 3989]
gi|218216721|gb|EEC90259.1| hypothetical protein EUBIFOR_01167 [Eubacterium biforme DSM 3989]
Length = 409
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 146/247 (59%), Gaps = 3/247 (1%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI+ E+++ +I S LVVSIA Y G+G+ DLIQEG+ GL++ ++F+ +G+K
Sbjct: 163 KIIADGEEAKQTLISSNLRLVVSIAKKYVGRGMLFLDLIQEGNCGLIKAVEKFDYTKGFK 222
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE- 252
STY WWI+Q+I RAIA+++RTIR+P M + K+ L + L R P EIAE
Sbjct: 223 FSTYATWWIRQSITRAIADQARTIRIPVHMVETINKLTRIQRQLVQDLGRDPMPEEIAEK 282
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
M NI VR + P+SL+ + + + D I D P+ QL+K E+
Sbjct: 283 MENISAEKVREIQKIALDPVSLETPIGEEDDSHLGDFIEDKDTLSPDDYTNNQLLKDEIN 342
Query: 313 ELLQTLSEREADILRLHFG-LDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
+LQ L+ERE +LRL FG LDG+T + +E+G+ +++RERIRQI AL KL+ N
Sbjct: 343 AVLQGLTEREEKVLRLRFGLLDGRTR-TLEEVGKEFNVTRERIRQIEAKALRKLKNPNRC 401
Query: 372 NNLKVYM 378
L+ ++
Sbjct: 402 KRLRDFV 408
>gi|33866155|ref|NP_897714.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33639130|emb|CAE08136.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 313
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 145/228 (63%), Gaps = 1/228 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ER++++ LVVS+A YQGKGL L DLIQEGS+GL R ++F+P RGYK STY +
Sbjct: 76 RRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTRGYKFSTYAF 135
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q++ RAIA +SRTIRLP ++ + I + + L+ +L MP+ EIAE ++I +
Sbjct: 136 WWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAMPSRVEIAEAMDIPLD 195
Query: 260 TVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
+ + + SLD V + G + D+I P +V++++ ++L L L
Sbjct: 196 ELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADSSLDEPLDIVEQRIHHEQLGRWLSHL 255
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366
SE+E +L+L FGL+G + EIGRL+ +SRER+RQ+ AL KL+
Sbjct: 256 SEQEQHVLKLRFGLEGNERHTLAEIGRLMDVSRERVRQVELKALRKLR 303
>gi|163786482|ref|ZP_02180930.1| RNA polymerase sigma-70 factor [Flavobacteriales bacterium ALC-1]
gi|159878342|gb|EDP72398.1| RNA polymerase sigma-70 factor [Flavobacteriales bacterium ALC-1]
Length = 287
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 144/226 (63%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
VVS+A YQ +GL L DLI EG+ GL++ AKRF+ RG+K +Y WWI+QAI++A+A
Sbjct: 61 FVVSVAKQYQNQGLKLPDLINEGNAGLVKAAKRFDETRGFKFISYAVWWIRQAILQALAE 120
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SR +RLP + G + KI +A + L + +R P EIA L+I V+ +++ + +
Sbjct: 121 QSRIVRLPLNKIGTINKINKAFSHLEQLHQRPPNAEEIARELDISAREVKQSMKNSGRHL 180
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
S+D + D ++ D++ + P++ + K+ + E++ L+TL+++E+D++RL+FG+
Sbjct: 181 SMDAPLKDGETFSLYDVVSATESPRPDKNLMKESLNLEVERALETLTQKESDVIRLNFGI 240
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
Q P++ +EIG + L+RER+RQIR + +L+ + LK Y+
Sbjct: 241 GDQPPMTLEEIGGIYDLTRERVRQIREKGIRRLRHASKSKILKTYL 286
>gi|441497172|ref|ZP_20979390.1| RNA polymerase sigma factor RpoD [Fulvivirga imtechensis AK7]
gi|441439101|gb|ELR72427.1| RNA polymerase sigma factor RpoD [Fulvivirga imtechensis AK7]
Length = 289
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 146/236 (61%), Gaps = 1/236 (0%)
Query: 144 ERIIRSYRSLVVSIATGYQ-GKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWI 202
E+++++ VVS+A Y + L DLI EG++GL++ AKRF+ +RG+K +Y WWI
Sbjct: 52 EKLVKANLRFVVSVAKQYHYSNKIPLNDLINEGNLGLVKAAKRFDEKRGFKFISYAVWWI 111
Query: 203 KQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVR 262
+Q+II+A+A SR +R+P + G ++KI +A+++L ++ R PTD E+AE+L++ V VR
Sbjct: 112 RQSIIQALAEHSRIVRIPSNKIGALSKIDQASSILEQQFEREPTDEELAELLDMSVDEVR 171
Query: 263 LAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSERE 322
+ +S+D ++ ++ D++ D E +V +++E+ LL TL+ERE
Sbjct: 172 TTVRSQTKQVSIDKPFSEDEGSSLLDVMEDEDSNAVEDLVYSDSLRREVARLLSTLTERE 231
Query: 323 ADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++ +FGL T +S ++IG L L+RER+RQI+ AL KL + LK Y+
Sbjct: 232 RIVISQYFGLSENTSLSLEDIGENLGLTRERVRQIKEKALRKLSKNPKNELLKPYL 287
>gi|326384463|ref|ZP_08206143.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
gi|326196808|gb|EGD54002.1| RNA polymerase sigma factor SigB [Gordonia neofelifaecis NRRL
B-59395]
Length = 332
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 144/246 (58%), Gaps = 1/246 (0%)
Query: 133 YKILCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERG 191
Y IL +E E ++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G
Sbjct: 85 YAILVREGEQARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAVEKFDYAKG 144
Query: 192 YKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIA 251
YK STY WWI+QAI R +A++SRTIRLP + V K+A L ++L R TD E+A
Sbjct: 145 YKFSTYATWWIRQAISRGMADQSRTIRLPVHLVEQVNKLARIRRELHQQLGREATDEELA 204
Query: 252 EMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQEL 311
I + ++ +R P+SLD V + + D I + T E +V L+ ++
Sbjct: 205 LESGIPAEKIADLMDHSRDPVSLDMPVGNDEEAPLGDFIEDAEATSAETVVIANLLHSDI 264
Query: 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371
+ +L TL ERE ++ + +GLD P + +IGR LSRER+RQI + KL+Q +
Sbjct: 265 RSVLSTLDEREMQVITMRYGLDDGQPRTLDQIGRAFGLSRERVRQIEREVMGKLRQGDRA 324
Query: 372 NNLKVY 377
L+ Y
Sbjct: 325 EKLRAY 330
>gi|456011651|gb|EMF45388.1| RNA polymerase sigma factor RpoD [Planococcus halocryophilus Or1]
Length = 327
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 87 DEEAKKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYSKGFKFSTYA 146
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 147 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPSPEEIGEEMDLLP 206
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I D P +L+K++L+++L TL
Sbjct: 207 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDSDAQSPSDHAAYELLKEQLEDVLDTL 266
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 267 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 326
>gi|365175256|ref|ZP_09362686.1| RNA polymerase sigma factor RpoD [Synergistes sp. 3_1_syn1]
gi|363612820|gb|EHL64346.1| RNA polymerase sigma factor RpoD [Synergistes sp. 3_1_syn1]
Length = 453
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 141/237 (59%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
S++ ++ + LVVSIA Y G+G+ DLIQEG++GL+R ++F+ +GYK STY WW
Sbjct: 216 SKDALVEANLRLVVSIAKKYIGRGMLFLDLIQEGNLGLIRAVEKFDYHKGYKFSTYATWW 275
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ + L +RL R PT EIA + I V
Sbjct: 276 IRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLVQRLGREPTAEEIAAGMEIPSDRV 335
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
+ P+SL+ + + + D + D PE Q+++++L E+L L++R
Sbjct: 336 EEIQRIAQEPVSLETPIGEEEDSQLGDFLEDKDLPSPEEAAASQILREQLDEMLDDLTDR 395
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGL+ + +E+GR ++RERIRQI AL KL+ + LK ++
Sbjct: 396 EREVLRLRFGLEDGHAHTLEEVGRRFGVTRERIRQIEAKALRKLRHPSRSKKLKDFL 452
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 141/238 (59%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++E +I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YW
Sbjct: 182 QAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTMGLERAVEKFDPTKGYRFSTYAYW 241
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA +SRTIRLP + + KI + LS+ PT EIA L +
Sbjct: 242 WIRQGITRAIATQSRTIRLPVHITEKLNKIKKVQRQLSQTQGHTPTIEEIAAALEMTPPQ 301
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + D++ D PE ++ ++ ++ EL +LL L+
Sbjct: 302 VREVLLRVPRSVSLEIKVGKEKDTELGDLLEAED-ISPEELLMREALQIELLKLLADLTS 360
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FG+ S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 361 RERDVISMRFGMVDGNVYSLSEIGRALDLSRERVRQIESKALQKLRQPKRRNRVRDYL 418
>gi|428301225|ref|YP_007139531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237769|gb|AFZ03559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 318
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 150/231 (64%), Gaps = 3/231 (1%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++ R++ + LVVS+A Y + + L DLIQEGSIG+ RG ++F+P +GY+ STY YW
Sbjct: 82 EAKRRMVEANLRLVVSVAKKYLKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYW 141
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA K RTIRLP + + KI +A LS++L R P+ E+A+ L++ +
Sbjct: 142 WIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLSQKLGRAPSAGELAKELDLTPAQ 201
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR +E+ R P+SLD + D + +++ + PE V + + +L+ L+ L+
Sbjct: 202 VREYLEKARLPLSLDLRLGDNHDTELGEMLEDTGAS-PEEFVMQSSLSNDLERLMANLTP 260
Query: 321 READILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
++ +++ + FGL DGQ+ ++ IG +L++SRER+RQI ALTKL+++ +
Sbjct: 261 QQREVISMRFGLKDGQS-MTLARIGEILNISRERVRQIEREALTKLRKSKV 310
>gi|402816528|ref|ZP_10866118.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
gi|402505430|gb|EJW15955.1| RNA polymerase sigma factor rpoD [Paenibacillus alvei DSM 29]
Length = 298
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 153/254 (60%), Gaps = 1/254 (0%)
Query: 125 ELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAK 184
E + +L K +I + E+++ + + LVVSIA Y G+G+SL DLIQEG++GL++
Sbjct: 45 EEEVDLAK-RIAEGDEEAKKMLTEANLRLVVSIARRYAGRGMSLLDLIQEGNMGLIKAVD 103
Query: 185 RFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244
+F+ +G+K STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R
Sbjct: 104 KFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRVSRQLVQELGRE 163
Query: 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQK 304
P EIA+ + + V VR ++ ++ PISL+ + + + D I D P
Sbjct: 164 PEVEEIAKEMELSVEKVREIMKISQDPISLETPIGEEHDTKLGDFIEDQDAQSPVESAAY 223
Query: 305 QLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364
+ +K +L ++L TL+ERE ++LRL FGLD + +E+G++ ++RERIRQI AL K
Sbjct: 224 ESLKTQLGDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGQVFGVTRERIRQIEAKALRK 283
Query: 365 LQQTNILNNLKVYM 378
L+ + LK Y+
Sbjct: 284 LRHPSRSKRLKDYI 297
>gi|289450258|ref|YP_003475183.1| RNA polymerase sigma factor RpoD [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184805|gb|ADC91230.1| RNA polymerase sigma factor RpoD [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 353
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/239 (38%), Positives = 142/239 (59%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
+E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ +F+ E+G+K STY
Sbjct: 114 QEAKDRLCEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVDKFDYEKGFKFSTYAT 173
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P E+A+ + I
Sbjct: 174 WWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQELGREPEVEELAQEMGISPE 233
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
VR + ++ P+SL+ + + + D IP D P L+K++L E+L L+
Sbjct: 234 KVREIQKISQEPVSLEKPIGEEEDSHLGDFIPDDDAPSPADQAAFTLLKEQLLEILSGLT 293
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LRL FGLD + +E+GR +++RERIRQI AL K++ + LK Y+
Sbjct: 294 PREEKVLRLRFGLDDGRSRTLEEVGREFNVTRERIRQIEAKALRKMRHPSRSKKLKDYL 352
>gi|228993035|ref|ZP_04152958.1| RNA polymerase sigma factor [Bacillus pseudomycoides DSM 12442]
gi|228999085|ref|ZP_04158667.1| RNA polymerase sigma factor [Bacillus mycoides Rock3-17]
gi|229006633|ref|ZP_04164267.1| RNA polymerase sigma factor [Bacillus mycoides Rock1-4]
gi|228754494|gb|EEM03905.1| RNA polymerase sigma factor [Bacillus mycoides Rock1-4]
gi|228760702|gb|EEM09666.1| RNA polymerase sigma factor [Bacillus mycoides Rock3-17]
gi|228766683|gb|EEM15323.1| RNA polymerase sigma factor [Bacillus pseudomycoides DSM 12442]
Length = 373
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 147/240 (61%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY
Sbjct: 133 DEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYA 192
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 193 TWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEEMDLAP 252
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR ++ + P+SL+ + + + D I + T P +L+K++L+++L TL
Sbjct: 253 EKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPADHAAYELLKEQLEDVLDTL 312
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK ++
Sbjct: 313 TDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFL 372
>gi|118472772|ref|YP_887083.1| RNA polymerase sigma factor SigB [Mycobacterium smegmatis str. MC2
155]
gi|399987098|ref|YP_006567447.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|441207679|ref|ZP_20973619.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|118174059|gb|ABK74955.1| sigma factor SigB [Mycobacterium smegmatis str. MC2 155]
gi|399231659|gb|AFP39152.1| RNA polymerase sigma factor sigB [Mycobacterium smegmatis str. MC2
155]
gi|440627862|gb|ELQ89667.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 319
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 133/225 (59%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+K STY WWI+QAI R +A+
Sbjct: 93 LVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMAD 152
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
+SRTIRLP + V K+A + + L R TD E+AE I V + +E +R P+
Sbjct: 153 QSRTIRLPVHLVEQVNKLARIKREMHQNLGREATDEELAEESGIPVEKINDLLEHSRDPV 212
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
SLD V + D I + E V +L+ +++ +L TL ERE ++RL FGL
Sbjct: 213 SLDMPVGTDEEAPLGDFIEDSEAMSAENAVISELLHTDIRYVLATLDEREQQVIRLRFGL 272
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
D P + +IG+L LSRER+RQI + KL+ + L+ Y
Sbjct: 273 DDGQPRTLDQIGKLFGLSRERVRQIEREVMAKLRNGERADRLRSY 317
>gi|427702480|ref|YP_007045702.1| sigma-70 family RNA polymerase sigma factor [Cyanobium gracile PCC
6307]
gi|427345648|gb|AFY28361.1| RNA polymerase sigma factor, sigma-70 family [Cyanobium gracile PCC
6307]
Length = 310
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/246 (39%), Positives = 150/246 (60%), Gaps = 1/246 (0%)
Query: 122 ENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLR 181
E + Y++ + K + R S+ER++R+ LVVS+A YQGKGL L DLIQEGS+GL R
Sbjct: 54 EESKTGYSVQENKTIKVGRRSKERMMRANLRLVVSVAKKYQGKGLELLDLIQEGSLGLER 113
Query: 182 GAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRL 241
++F+P RGYK STY +WWI+Q++ RAIA +SR IRLP ++ + + + + L+ +L
Sbjct: 114 AVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRAIRLPVHLSERLTTVRKVSLELAHKL 173
Query: 242 RRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAV-TDRGCMTMQDIIPGPDETMPER 300
MP+ EI+E + I V + + + SLD + + G + D+I P
Sbjct: 174 GAMPSRREISEAMAIPVEELDSLLRQALTISSLDAPIHAEDGRSFLGDLIADGSAEEPLD 233
Query: 301 MVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360
+++ + +++L EL+ LS +E ++L L FGLDG + EIGR L +SRER+RQI
Sbjct: 234 RIERGMHQEQLAELMGHLSAQEKEVLALRFGLDGMERHTLAEIGRQLDVSRERVRQIELK 293
Query: 361 ALTKLQ 366
AL KL+
Sbjct: 294 ALRKLR 299
>gi|223936990|ref|ZP_03628898.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [bacterium
Ellin514]
gi|223894271|gb|EEF60724.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [bacterium
Ellin514]
Length = 614
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 133/226 (58%)
Query: 153 LVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212
LV+SI Y +GL+ D+IQEG++GL++G ++F RGYK STY WWI+QAI RAIA+
Sbjct: 383 LVISIGKKYTNRGLAFLDIIQEGNMGLMKGVEKFEYRRGYKFSTYATWWIRQAITRAIAD 442
Query: 213 KSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPI 272
++RTIR+P M ++ K+ A L + R T EIA+ + I V V+ ++ + PI
Sbjct: 443 QARTIRIPVHMIEIIGKLMRAQKQLLQEFGREATPEEIADEMQISVERVKSILKMAQQPI 502
Query: 273 SLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGL 332
S+ +V D T D I P M L+K +L ++L TL+ERE I+ L FGL
Sbjct: 503 SMQASVGDSDDATFGDFIEDKSAENPSDMTSYSLLKDKLNDVLATLTERERRIVELRFGL 562
Query: 333 DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
+ +E+G+ ++RERIRQI AL KL+ + +LK ++
Sbjct: 563 VDGYARTLEEVGKQYKVTRERIRQIEAKALRKLRHPTRVRHLKGFL 608
>gi|87300555|ref|ZP_01083397.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
gi|87284426|gb|EAQ76378.1| Putative type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 5701]
Length = 398
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 143/232 (61%), Gaps = 1/232 (0%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
L + R +++R+I++ LVV++A YQ +G+ L DL+QEG++GL R ++++P RG++ S
Sbjct: 152 LLRGRRARDRMIQANLRLVVAVAKKYQKRGVELLDLVQEGTLGLERAVEKYDPTRGFRFS 211
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY YWWI+Q + RAIA +SRTIRLP + + +I +A + R + +E+AE L
Sbjct: 212 TYAYWWIRQGVTRAIATQSRTIRLPVHVTEKLNRIKKAQRQFASDHGRTASLAELAEALQ 271
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
VRL + R ISL+ V + D++ +T PE+ + +Q + +L LL
Sbjct: 272 WSEEAVRLTLLRVPRSISLEAKVGRDQDTPLGDLLEATSDT-PEQSLTRQQLHSDLDALL 330
Query: 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
LSEREA+++RL FGL TP + +IG + LSRER+RQI AL KL+Q
Sbjct: 331 DELSEREAEVIRLRFGLADDTPRTLAQIGEGMQLSRERVRQIETRALHKLRQ 382
>gi|146299193|ref|YP_001193784.1| RpoD family RNA polymerase sigma factor [Flavobacterium johnsoniae
UW101]
gi|395802997|ref|ZP_10482248.1| RpoD family RNA polymerase sigma factor [Flavobacterium sp. F52]
gi|399027510|ref|ZP_10728997.1| RNA polymerase sigma factor, sigma-70 family [Flavobacterium sp.
CF136]
gi|57471283|gb|AAW50927.1| RpoD [Flavobacterium johnsoniae]
gi|146153611|gb|ABQ04465.1| RNA polymerase, sigma 70 subunit, RpoD family [Flavobacterium
johnsoniae UW101]
gi|395434815|gb|EJG00758.1| RpoD family RNA polymerase sigma factor [Flavobacterium sp. F52]
gi|398074934|gb|EJL66063.1| RNA polymerase sigma factor, sigma-70 family [Flavobacterium sp.
CF136]
Length = 287
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 157/245 (64%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I ++ + E++ ++ VVS+A YQ +GL+L DLI EG++GL++ A+RF+ RG+K
Sbjct: 42 RIKAGDQRALEKLTKANLRFVVSVAKQYQNQGLTLPDLINEGNLGLIKAAQRFDETRGFK 101
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
+Y WWI+Q+I++A+A +SR +RLP + G + KI + +L + R P+ EIA+
Sbjct: 102 FISYAVWWIRQSILQALAEQSRIVRLPLNKIGSINKINKMYALLEQSNERPPSAEEIAKE 161
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
L++ V+ V+ +++ + +S+D + + + D++ + P+R + + ++ E++
Sbjct: 162 LDMTVNDVKESMKNSGRHLSMDAPLVEGEDSNLYDVLRSGESPNPDRELIHESLRTEIER 221
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L+TL+ READ++RL+FGL Q P++ +EIG L+RER+RQI+ A+ +L+ T+
Sbjct: 222 SLETLTPREADVVRLYFGLGDQHPMTLEEIGETFDLTRERVRQIKEKAIRRLKHTSRSKI 281
Query: 374 LKVYM 378
LK Y+
Sbjct: 282 LKTYL 286
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,468,325,155
Number of Sequences: 23463169
Number of extensions: 214073435
Number of successful extensions: 872120
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10810
Number of HSP's successfully gapped in prelim test: 1880
Number of HSP's that attempted gapping in prelim test: 853179
Number of HSP's gapped (non-prelim): 14346
length of query: 379
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 235
effective length of database: 8,980,499,031
effective search space: 2110417272285
effective search space used: 2110417272285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)