BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046578
(379 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZSL6|SIGD_ARATH RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis
thaliana GN=SIGD PE=2 SV=1
Length = 419
Score = 332 bits (850), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 155/244 (63%), Positives = 207/244 (84%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+ILC+ +E++E+I R YR LVVSIATGYQGKGL+L+DLIQEGSIGLLRGA+RF+P+RGYK
Sbjct: 171 EILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYK 230
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
LSTYVYWWIKQAI+RAIA+KSR ++LPGSM + AK+AEA+NVL+R+LRR P+ EIAE
Sbjct: 231 LSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEH 290
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
LN++VS VRLA+ER+R P+SLD + G MT+Q+I+ GPDET PE MV+++ MK E+++
Sbjct: 291 LNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQ 350
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
LL +L+ RE+ +L L+FGL+G+TP+S +EIG+ L LSRER+RQI GIAL KL+ + +N+
Sbjct: 351 LLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVND 410
Query: 374 LKVY 377
LK+Y
Sbjct: 411 LKIY 414
>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa
GN=rpoD1 PE=3 SV=1
Length = 416
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++E++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 178 RRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 237
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIA + + +
Sbjct: 238 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIE 297
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+ +L TLS
Sbjct: 298 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLS 356
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 357 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415
>sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor RpoD OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rpoD PE=3 SV=1
Length = 425
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 158/237 (66%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 189 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 248
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ +RR PT+ EIAE + + + +
Sbjct: 249 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAEKMEMTIEKL 308
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L TLS R
Sbjct: 309 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVSKNLLREDLENVLDTLSPR 367
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 368 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 424
>sp|P26683|RPOD_NOSS1 RNA polymerase sigma factor RpoD OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rpoD PE=3 SV=1
Length = 390
Score = 197 bits (502), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 1/239 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R +++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY
Sbjct: 152 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 211
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + +
Sbjct: 212 WWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIE 271
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+R + + PISL+ + + D I ET PE V K L++++L+++L +LS
Sbjct: 272 KLRFIAKSAQLPISLETPIGKEEDSRLGDFIESDGET-PEDQVSKNLLREDLEKVLDSLS 330
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D+LRL +GLD + +EIG++ +++RERIRQI AL KL+ N + LK Y+
Sbjct: 331 PRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389
>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD1 PE=3 SV=2
Length = 399
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 156/237 (65%), Gaps = 1/237 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++++S LVVSIA Y +GLS +DLIQEGS+GL+R A++F+ E+GYK STY WW
Sbjct: 163 AKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 222
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA++SRTIRLP + +++I + +LS+ + R PT+ EIA + + + +
Sbjct: 223 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKL 282
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R + + PISL+ + + D I ET PE V K L++++L+ +L TLS R
Sbjct: 283 RFIAKSAQLPISLETPIGKEEDSRLGDFIEADGET-PEDEVAKNLLREDLEGVLSTLSPR 341
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E D+LRL +GLD + +EIG+L +++RERIRQI AL KL+ N + LK Y+
Sbjct: 342 ERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398
>sp|P06224|RPOD_BACSU RNA polymerase sigma factor RpoD OS=Bacillus subtilis (strain 168)
GN=sigA PE=1 SV=2
Length = 371
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI + ES+ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +GYK
Sbjct: 126 KIEEGDEESKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDYRKGYK 185
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EIAE
Sbjct: 186 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPTPEEIAED 245
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I + T P +L+K++L++
Sbjct: 246 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEATSPSDHAAYELLKEQLED 305
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 306 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 365
Query: 374 LKVYM 378
LK ++
Sbjct: 366 LKDFL 370
>sp|P52329|RPOD_ENTFA RNA polymerase sigma factor RpoD OS=Enterococcus faecalis (strain
ATCC 700802 / V583) GN=rpoD PE=3 SV=2
Length = 368
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
KI ++E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 123 KIEEGDQEAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDYRKGFK 182
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R PT EI
Sbjct: 183 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGREPTPEEIGAE 242
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 243 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPAEHAAYELLKEQLED 302
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 303 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 362
Query: 374 LKVYM 378
LK ++
Sbjct: 363 LKDFL 367
>sp|O83506|RPOD_TREPA RNA polymerase sigma factor RpoD OS=Treponema pallidum (strain
Nichols) GN=rpoD PE=3 SV=1
Length = 611
Score = 178 bits (452), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 157/270 (58%)
Query: 109 RKKRTKESDFLDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSL 168
R+ R E DF + +G L ++ +++++++I + LVVSIA Y +GL
Sbjct: 340 RRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLF 399
Query: 169 KDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVA 228
DL+QEG+IGL++ ++F +GYK STY WWI+QAI R+I++++RTIR+P M +
Sbjct: 400 FDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQIN 459
Query: 229 KIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQD 288
K+ + L ++ R P+D EIA+ L V V+ R PISL+ + + ++ D
Sbjct: 460 KVTRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVAREPISLETPIGEEEDSSLGD 519
Query: 289 IIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLS 348
+P D P R+ ++ L+K+E++ +L L RE ++LR+ FGLDG + +E+G
Sbjct: 520 FVPDADVENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFD 579
Query: 349 LSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RERIRQI AL +L+ LK ++
Sbjct: 580 VTRERIRQIEAKALKRLRHPRHSRRLKDFL 609
>sp|Q31QR8|RPOD4_SYNE7 RNA polymerase sigma factor rpoD4 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD4 PE=3 SV=1
Length = 311
Score = 178 bits (451), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 149/245 (60%), Gaps = 1/245 (0%)
Query: 122 ENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLR 181
EN + + N +L + ++ +++++ LVVS+A YQ +GL L DLIQEGS+GL R
Sbjct: 54 ENPDAESNSENQAVLQAGQRAKTKMLKANLRLVVSVAKKYQNQGLELLDLIQEGSLGLER 113
Query: 182 GAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRL 241
++F+P GYK STY YWWI+Q++ RAI N +RTIRLP ++ +++I + L+ +L
Sbjct: 114 AVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKISRIKKMTRELTHQL 173
Query: 242 RRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDG-AVTDRGCMTMQDIIPGPDETMPER 300
+R+P+ +EIAE L + + V + + ++ SLD A D G + D+IP P P
Sbjct: 174 KRLPSRAEIAEALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMD 233
Query: 301 MVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360
+ + + +++ L L+ERE +L+L FGL + EIGR L++SRERIRQ+
Sbjct: 234 AMDRHIQHEQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEAR 293
Query: 361 ALTKL 365
AL KL
Sbjct: 294 ALQKL 298
>sp|P52328|RPSD2_BACSP RNA polymerase sigma factor RpoD OS=Bacillus sp. GN=sigA PE=3 SV=1
Length = 377
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 150/245 (61%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I+ + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 132 RIMNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHNKGFK 191
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ + L + L R PT EIA
Sbjct: 192 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAAE 251
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+ + V VR ++ + P+SL+ + + + D I + P +L+K++L++
Sbjct: 252 MELSVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALTPADAAAYELLKEQLED 311
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL+ERE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 312 VLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 371
Query: 374 LKVYM 378
LK ++
Sbjct: 372 LKDFL 376
>sp|P52331|RPOD_LISMO RNA polymerase sigma factor RpoD OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=rpoD PE=3 SV=1
Length = 374
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 146/238 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY W
Sbjct: 136 EAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATW 195
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E +++
Sbjct: 196 WIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEK 255
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I D T P +L+K++L+++L TL++
Sbjct: 256 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTD 315
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ + LK ++
Sbjct: 316 REENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFL 373
>sp|Q92BQ6|RPOD_LISIN RNA polymerase sigma factor RpoD OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=rpoD PE=3 SV=1
Length = 374
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 129 RIEAGDIEAKGRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLMKAVEKFDFNKGFK 188
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ EI E
Sbjct: 189 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRSLLQDLGRDPSPEEIGEE 248
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D T P +L+K++L++
Sbjct: 249 MDLPTEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSDHAAYELLKEQLED 308
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+GR+ ++RERIRQI AL KL+ +
Sbjct: 309 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQ 368
Query: 374 LKVYM 378
LK ++
Sbjct: 369 LKDFL 373
>sp|Q03066|RPSC_NOSS1 RNA polymerase sigma-C factor OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=sigC PE=3 SV=2
Length = 416
Score = 176 bits (447), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+S+E +I++ LVVS+A YQ +GL L DL+QEG++GL R ++F+P +GY+ STY YW
Sbjct: 176 QSKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYRFSTYAYW 235
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+Q I RAIA SRTIRLP + + KI +A +++ R PT ++A L++ +
Sbjct: 236 WIRQGITRAIATSSRTIRLPVHITEKLNKIKKAQRKIAQEKGRTPTLEDLAIELDMTPTQ 295
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR + R +SL+ V + +++ D PE M+ ++ ++++L+ LL L+
Sbjct: 296 VREVLLRVPRSVSLETKVGKDKDTELGELLE-TDGVTPEEMLMRESLQRDLQHLLADLTS 354
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE D++ + FGL P S EIGR L LSRER+RQI AL KL+Q N ++ Y+
Sbjct: 355 RERDVILMRFGLADGHPYSLAEIGRALDLSRERVRQIESKALQKLRQPKRRNLIRDYL 412
>sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor RpoD OS=Mycobacterium tuberculosis
GN=rpoD PE=1 SV=1
Length = 528
Score = 175 bits (444), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 463
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 464 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 522
Query: 374 LKVYM 378
L+ Y+
Sbjct: 523 LRDYL 527
>sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor RpoD OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=rpoD PE=3 SV=1
Length = 528
Score = 175 bits (444), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 151/245 (61%), Gaps = 3/245 (1%)
Query: 136 LCKERE-SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKL 194
+C++ + ++ ++ + LVVS+A Y G+G++ DLIQEG++GL+R ++F+ +GYK
Sbjct: 284 ICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKF 343
Query: 195 STYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEML 254
STY WWI+QAI RA+A+++RTIR+P M ++ K+ L + L R PT E+A+ +
Sbjct: 344 STYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEM 403
Query: 255 NIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKEL 314
+I V + R PISLD + D G + D I + + V L++ +L+ +
Sbjct: 404 DITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFTLLQDQLQSV 463
Query: 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
L TLSEREA ++RL FGL DGQ P + EIG++ ++RERIRQI ++KL+ +
Sbjct: 464 LDTLSEREAGVVRLRFGLTDGQ-PRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQV 522
Query: 374 LKVYM 378
L+ Y+
Sbjct: 523 LRDYL 527
>sp|O22056|SIGB_ARATH RNA polymerase sigma factor sigB OS=Arabidopsis thaliana GN=SIGB
PE=2 SV=2
Length = 572
Score = 174 bits (442), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 148/249 (59%), Gaps = 5/249 (2%)
Query: 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPER 190
+ + LCK++ +I+S LV+SIA YQG G++L+DL+QEG GL+RGA++F+ +
Sbjct: 326 IHHGTLCKDK-----MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATK 380
Query: 191 GYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEI 250
G+K STY +WWIKQA+ ++++++SR IRLP M ++ EA L + P + EI
Sbjct: 381 GFKFSTYAHWWIKQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEI 440
Query: 251 AEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQE 310
AE + + + + + P SLD + + ++I P+ E ++ K+ M+Q+
Sbjct: 441 AEATGLSMKRLMAVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQD 500
Query: 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
L ++L +L RE ++R FG++ + +EIG ++ +SRER+RQI A KL+
Sbjct: 501 LDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKR 560
Query: 371 LNNLKVYMV 379
N+L+ Y+V
Sbjct: 561 NNHLQQYLV 569
>sp|Q03065|RPSB_NOSS1 RNA polymerase sigma-B factor OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=sigB PE=3 SV=1
Length = 332
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 144/229 (62%), Gaps = 1/229 (0%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
+++++I++ LVVSIA YQ + L DLIQEG++GL RG ++F+P GYK STY YWW
Sbjct: 97 AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+Q I RAIA +SRTIRLP MA + KI LS++L + +EIA+ LN+ S +
Sbjct: 157 IRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQI 216
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ R P+SLD + +QD++ D PER +++L+ Q++ LL L+ +
Sbjct: 217 REYLQLVRQPVSLDMRIGFEQDTQLQDLLKD-DGMSPERYAERELLYQDIHNLLAKLTPQ 275
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370
+ ++L L FGL G ++ +I + + +SRER+RQ+ ALT L++ I
Sbjct: 276 QKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLRRYGI 324
>sp|P33118|RPSB_CORDI RNA polymerase sigma factor SigB OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=sigB PE=3 SV=2
Length = 329
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 146/245 (59%), Gaps = 1/245 (0%)
Query: 134 KILCKE-RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGY 192
K+L KE R+++ ++ + LVVS+A Y G+G+ L DLIQEG++GL+R ++F+ +G+
Sbjct: 83 KVLVKEGRKARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYSKGF 142
Query: 193 KLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAE 252
K STY WWI+QAI R +A++SRTIRLP + V K++ + ++L R T+ E+AE
Sbjct: 143 KFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLSRIKREMYQQLGREATNEELAE 202
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
I S + + + ++R P+SLD V + D I + T E V L +++
Sbjct: 203 ESGIEESKIEMLLRQSRDPVSLDMPVGADEEAPLGDFIEDSEATDAESAVVASLRHSDIR 262
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TL +RE D++RL +GLD P + +IGR LSRER+RQI ++KL+
Sbjct: 263 TVLDTLEQREQDVIRLRYGLDDGVPRTLDQIGRQFGLSRERVRQIEREVMSKLRDGARAE 322
Query: 373 NLKVY 377
L+ Y
Sbjct: 323 KLRAY 327
>sp|O66381|RPOD_BACHD RNA polymerase sigma factor RpoD OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=sigA PE=3 SV=2
Length = 372
Score = 174 bits (440), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 149/245 (60%)
Query: 134 KILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYK 193
+I + E++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K
Sbjct: 127 RIEQGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYNKGFK 186
Query: 194 LSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEM 253
STY WWI+QAI RAIA+++RTIR+P M + K+ L + L R P+ E+AE
Sbjct: 187 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEVAEE 246
Query: 254 LNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKE 313
+++ VR ++ + P+SL+ + + + D I D P +L+K++L++
Sbjct: 247 MDLTPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDALAPSDAAAYELLKEQLED 306
Query: 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373
+L TL++RE ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ +
Sbjct: 307 VLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKR 366
Query: 374 LKVYM 378
LK ++
Sbjct: 367 LKDFL 371
>sp|Q99TT5|RPOD_STAAN RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
N315) GN=rpoD PE=1 SV=1
Length = 368
Score = 172 bits (435), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 143/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWW 190
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI E +++ V
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKV 250
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D I + P +L+K++L+++L TL++R
Sbjct: 251 REVLKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDR 310
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|P0A0I9|RPOD_STAAW RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MW2) GN=rpoD PE=3 SV=1
Length = 368
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 143/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWW 190
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI E +++ V
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKV 250
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D I + P +L+K++L+++L TL++R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDR 310
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|Q6G905|RPOD_STAAS RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MSSA476) GN=rpoD PE=3 SV=1
Length = 368
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 143/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWW 190
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI E +++ V
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKV 250
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D I + P +L+K++L+++L TL++R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDR 310
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|Q6GGD8|RPOD_STAAR RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
MRSA252) GN=rpoD PE=3 SV=1
Length = 368
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 143/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWW 190
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI E +++ V
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKV 250
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D I + P +L+K++L+++L TL++R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDR 310
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|P0A0I8|RPOD_STAAM RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=rpoD PE=1 SV=1
Length = 368
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 143/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWW 190
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI E +++ V
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKV 250
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D I + P +L+K++L+++L TL++R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDR 310
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|Q5HFJ9|RPOD_STAAC RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
COL) GN=rpoD PE=3 SV=1
Length = 368
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 143/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWW 190
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI E +++ V
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKV 250
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D I + P +L+K++L+++L TL++R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDR 310
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|P0A0J0|RPOD_STAA8 RNA polymerase sigma factor RpoD OS=Staphylococcus aureus (strain
NCTC 8325) GN=rpoD PE=3 SV=1
Length = 368
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 143/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFNKGFKFSTYATWW 190
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI E +++ V
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPAEKV 250
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D I + P +L+K++L+++L TL++R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDR 310
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|P59117|RPOD_LEPIN RNA polymerase sigma factor RpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar Lai (strain 56601)
GN=rpoD PE=3 SV=1
Length = 585
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 159/289 (55%), Gaps = 11/289 (3%)
Query: 95 ECESVLKMMRRRSRRKKRTKESDFLDKENGELDYNLVKY--KILCKERE---SQERIIRS 149
E V+K +R R+ +R +++E G + + KI+ ERE +++ ++++
Sbjct: 301 EVREVIKDIRNNERKLRR------MEQEAGSTVQEIKDWGEKIIKGEREISQAKKELVKA 354
Query: 150 YRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRA 209
LVVSIA Y +G+ DLIQEG+IGL++ +F ++GYK STY WWI+QAI RA
Sbjct: 355 NLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRA 414
Query: 210 IANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTR 269
I++++RTIR+P M V K+ + + R P + EIAE L V V++ R
Sbjct: 415 ISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAR 474
Query: 270 HPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLH 329
PISL+ V + D IP + P ++ ++++++L TL RE ++R+
Sbjct: 475 EPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRMR 534
Query: 330 FGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
FGLD P + +E+G ++RERIRQI AL +L+ + LK Y+
Sbjct: 535 FGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>sp|P61540|RPOD_LEPIC RNA polymerase sigma factor RpoD OS=Leptospira interrogans
serogroup Icterohaemorrhagiae serovar copenhageni
(strain Fiocruz L1-130) GN=rpoD PE=3 SV=1
Length = 585
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 159/289 (55%), Gaps = 11/289 (3%)
Query: 95 ECESVLKMMRRRSRRKKRTKESDFLDKENGELDYNLVKY--KILCKERE---SQERIIRS 149
E V+K +R R+ +R +++E G + + KI+ ERE +++ ++++
Sbjct: 301 EVREVIKDIRNNERKLRR------MEQEAGSTVQEIKDWGEKIIKGEREISQAKKELVKA 354
Query: 150 YRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRA 209
LVVSIA Y +G+ DLIQEG+IGL++ +F ++GYK STY WWI+QAI RA
Sbjct: 355 NLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRA 414
Query: 210 IANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTR 269
I++++RTIR+P M V K+ + + R P + EIAE L V V++ R
Sbjct: 415 ISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLGWPVQKVKMVKNVAR 474
Query: 270 HPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLH 329
PISL+ V + D IP + P ++ ++++++L TL RE ++R+
Sbjct: 475 EPISLEIPVGSEEDSELGDFIPDTEVETPVNAAASSILAEQIRQVLHTLPAREQKVIRMR 534
Query: 330 FGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
FGLD P + +E+G ++RERIRQI AL +L+ + LK Y+
Sbjct: 535 FGLDDGYPQTLEEVGYQFKVTRERIRQIEAKALRRLRHPSRSKKLKDYI 583
>sp|P77994|RPOD_THEMA RNA polymerase sigma factor RpoD OS=Thermotoga maritima (strain
ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rpoD PE=1
SV=3
Length = 399
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 146/229 (63%)
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+++++E++I S LVVSIA Y G+GLS +DLIQEG+IGLL+ ++F+ +GYK STY
Sbjct: 152 DKKAKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYA 211
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
WWI+QAI RAIA+++RTIR+P M + K+ ++ P+ E+A+M+
Sbjct: 212 TWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMGKPP 271
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
++ +E + ISL+ + + +++D + P++ + LM++EL+++L+TL
Sbjct: 272 EKIKEILEAAKETISLESPIGEDEDSSIEDFVADDSIASPKKEAMRMLMREELEKVLKTL 331
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
S REA +LR+ +GL P + +E+G+ +++RERIRQI AL KL+
Sbjct: 332 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 380
>sp|Q8CP24|RPOD_STAES RNA polymerase sigma factor RpoD OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=rpoD PE=3 SV=1
Length = 368
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 143/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWW 190
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI E +++ V
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKV 250
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D I + P +L+K++L+++L TL++R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDR 310
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|Q5HNY7|RPOD_STAEQ RNA polymerase sigma factor RpoD OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=rpoD PE=3 SV=1
Length = 368
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/237 (36%), Positives = 143/237 (60%)
Query: 142 SQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWW 201
++ R+ + LVVSIA Y G+G+ DLIQEG++GL++ ++F+ +G+K STY WW
Sbjct: 131 AKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKGFKFSTYATWW 190
Query: 202 IKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTV 261
I+QAI RAIA+++RTIR+P M + K+ L + L R P EI E +++ V
Sbjct: 191 IRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKV 250
Query: 262 RLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSER 321
R ++ + P+SL+ + + + D I + P +L+K++L+++L TL++R
Sbjct: 251 REILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDR 310
Query: 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
E ++LRL FGLD + +E+G++ ++RERIRQI AL KL+ + LK +M
Sbjct: 311 EENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFM 367
>sp|Q9LD95|SIGF_ARATH RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis
thaliana GN=SIGF PE=1 SV=1
Length = 547
Score = 170 bits (430), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 138/238 (57%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R S+E++I + LVV IA YQ +GL+ +DL+QEGS+GL++ ++F P+ G + +TY Y
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 364
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+Q+I ++I SRTIRLP ++ ++ K++EA + P+ E+A + +
Sbjct: 365 WWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTE 424
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
+ + TR P+S+ + T Q+I P P V KQLM+ ++ LL LS
Sbjct: 425 KLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLS 484
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVY 377
+E I++L FG+DG S EIG + LS+ER+RQ+ AL +L+Q + L Y
Sbjct: 485 PKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542
>sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor HrdB OS=Streptomyces griseus
GN=hrdB PE=1 SV=1
Length = 514
Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 146/240 (60%), Gaps = 2/240 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ ++ + LVVS+A Y G+G+ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 275 RRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 334
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+A + + L R PT E+A+ L++
Sbjct: 335 WWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPE 394
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISL + + G D+I + +P V L++++L +L TLS
Sbjct: 395 KVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLS 454
Query: 320 EREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++ + FGL DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 455 EREAGVVSMRFGLTDGQ-PKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 513
>sp|P18183|HRDB_STRCO RNA polymerase principal sigma factor HrdB OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=hrdB
PE=3 SV=2
Length = 511
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 146/240 (60%), Gaps = 2/240 (0%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ ++ + LVVS+A Y G+G+ DLIQEG++GL+R ++F+ +GYK STY
Sbjct: 272 RRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYAT 331
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI RA+A+++RTIR+P M ++ K+A + + L R PT E+A+ L++
Sbjct: 332 WWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPE 391
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
V + R PISL + + G D+I + +P V L++++L +L TLS
Sbjct: 392 KVIEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHSVLDTLS 451
Query: 320 EREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
EREA ++ + FGL DGQ P + EIG++ ++RERIRQI ++KL+ + L+ Y+
Sbjct: 452 EREAGVVSMRFGLTDGQ-PKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL 510
>sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD2 PE=1 SV=1
Length = 320
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 170/287 (59%), Gaps = 3/287 (1%)
Query: 80 VSFANGAEEVCFDDGECESVLKMMRRRSRRKKRTKESDFLDKENGELDYNLVKY-KILCK 138
V EE+CF + + ++ ++ ++ + R ++ +D NL + + +
Sbjct: 23 VRLLTAEEELCFG-RQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLDRQIEQ 81
Query: 139 ERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYV 198
+ ++ ++I + LVVSIA YQ + + DLIQEG++GL RG ++F+P +GYK STY
Sbjct: 82 GQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYKFSTYA 141
Query: 199 YWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258
YWWI+QAI RAIA +SRTIRLP + + K+ + LS++L R T SE+AE+L + +
Sbjct: 142 YWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQRELSQQLGRSATASELAEVLELPL 201
Query: 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTL 318
VR I+ R P+SLD V D +Q+++ +++ P V+++ ++++L+ L+ L
Sbjct: 202 EQVREYIQMNRQPVSLDVKVGDSQDTELQELLED-EQSSPSDYVEQESLRRDLRNLMAEL 260
Query: 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
+ ++ ++ L +GLD +S ++G L++SRER+R++ A+ L
Sbjct: 261 TPQQQAVIALRYGLDEGDSLSLAKVGERLNISRERVRKLERQAMDHL 307
>sp|P0A4J0|RPOD_STRR6 RNA polymerase sigma factor RpoD OS=Streptococcus pneumoniae
(strain ATCC BAA-255 / R6) GN=rpoD PE=3 SV=1
Length = 369
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 141/227 (62%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ +F+ +G+K STY W
Sbjct: 130 EAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ L + L + PT +IAE +++
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I P + +++++L E+L TL++
Sbjct: 250 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTD 309
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
RE ++LRL FGLD + +++G++ +++RERIRQI AL KL+Q
Sbjct: 310 REENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQ 356
>sp|P0A4I9|RPOD_STRPN RNA polymerase sigma factor RpoD OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=rpoD PE=3
SV=1
Length = 369
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 141/227 (62%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ +F+ +G+K STY W
Sbjct: 130 EAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 189
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ L + L + PT +IAE +++
Sbjct: 190 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 249
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I P + +++++L E+L TL++
Sbjct: 250 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEILDTLTD 309
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
RE ++LRL FGLD + +++G++ +++RERIRQI AL KL+Q
Sbjct: 310 REENVLRLRFGLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRQ 356
>sp|Q31QG5|RPOD3_SYNE7 RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus
(strain PCC 7942) GN=rpoD3 PE=3 SV=1
Length = 320
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 141/227 (62%), Gaps = 1/227 (0%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
+++ ++I + LVVS+A Y + + L DLIQEG+IG+ RG ++F+P +GY+ STY YW
Sbjct: 84 QAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYW 143
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA K+RTIRLP + + KI + LS++L R T E+A L++ +
Sbjct: 144 WIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGRTATLPELAAALDLTPAQ 203
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR +E+ RHP+SLD V D + D++ D T PE + M++++ LL L+E
Sbjct: 204 VRDYLEKARHPLSLDLRVGDNQDTELGDLLE-TDCTTPEEFTLQASMRRDIDRLLDQLTE 262
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
++ ++ L +GL+ ++ IG L +SRER+RQ+ AL L+Q
Sbjct: 263 QQRQVIALRYGLEDGQVMTLASIGDRLQISRERVRQLEREALHTLRQ 309
>sp|P26480|RPOD_PSEAE RNA polymerase sigma factor RpoD OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpoD
PE=3 SV=1
Length = 617
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 141/242 (58%)
Query: 137 CKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLST 196
K R +++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK ST
Sbjct: 374 AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFST 433
Query: 197 YVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNI 256
Y WWI+QAI R+IA+++RTIR+P M + K+ + + + + R PT E+ E +++
Sbjct: 434 YATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMDM 493
Query: 257 HVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQ 316
+R ++ + PIS++ + D + D I P M + +K+ +E+L
Sbjct: 494 PEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIEMATSESLKESTREVLA 553
Query: 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKV 376
L+ REA +LR+ FG+D T + +E+G+ ++RERIRQI AL KL+ + +L+
Sbjct: 554 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEHLRS 613
Query: 377 YM 378
++
Sbjct: 614 FL 615
>sp|O33662|RPOD_STRMU RNA polymerase sigma factor RpoD OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rpoD PE=3 SV=1
Length = 371
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 139/227 (61%)
Query: 141 ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYW 200
E+++R+ + LVVSIA Y G+G+ DLIQEG++GL++ +F+ +G+K STY W
Sbjct: 132 EAKQRLAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVDKFDYSKGFKFSTYATW 191
Query: 201 WIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVST 260
WI+QAI RAIA+++RTIR+P M + K+ L + L + PT +IAE +++
Sbjct: 192 WIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIAERMDMTPDK 251
Query: 261 VRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320
VR ++ + P+SL+ + + + D I P + +++++L E+L TL++
Sbjct: 252 VREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTD 311
Query: 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
RE ++LRL FGLD + +++G++ ++RERIRQI AL KL+
Sbjct: 312 REENVLRLRFGLDDGKMRTLEDVGKVFDVTRERIRQIEAKALRKLRH 358
>sp|P56835|RPOD_CHLMU RNA polymerase sigma factor RpoD OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=rpoD PE=3 SV=1
Length = 571
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 137/243 (56%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
+ K +E+++ ++ S LV+SIA Y +GLS DLIQEG++GL++ ++F RGYK S
Sbjct: 311 MDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFS 370
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY WWI+QA+ RAIA+++RTIR+P M + K+ L + PT E+ E L
Sbjct: 371 TYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELGEELG 430
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
VR + +HPISL V D G + D + P ++K ++KE+L
Sbjct: 431 FTPDRVREIYKIAQHPISLQAEVGDSGESSFGDFLEDTAVESPAEATGYSMLKDKMKEVL 490
Query: 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLK 375
+TL++RE +L FGL P + +E+G +++RERIRQI AL K++ L+
Sbjct: 491 KTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLR 550
Query: 376 VYM 378
++
Sbjct: 551 AFL 553
>sp|P18333|RPOD_CHLTR RNA polymerase sigma factor RpoD OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpoD PE=3 SV=2
Length = 571
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 137/243 (56%)
Query: 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLS 195
+ K +E+++ ++ S LV+SIA Y +GLS DLIQEG++GL++ ++F RGYK S
Sbjct: 311 MDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFS 370
Query: 196 TYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN 255
TY WWI+QA+ RAIA+++RTIR+P M + K+ L + PT E+ E L
Sbjct: 371 TYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELGEELG 430
Query: 256 IHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELL 315
VR + +HPISL V D G + D + P ++K ++KE+L
Sbjct: 431 FTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSMLKDKMKEVL 490
Query: 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLK 375
+TL++RE +L FGL P + +E+G +++RERIRQI AL K++ L+
Sbjct: 491 KTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLR 550
Query: 376 VYM 378
++
Sbjct: 551 AFL 553
>sp|P18182|HRDA_STRCO RNA polymerase principal sigma factor HrdA OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=hrdA
PE=3 SV=2
Length = 396
Score = 162 bits (411), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 142/246 (57%), Gaps = 14/246 (5%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R ++ R+I + LVVS+A Y G+GL++ DL+QEG++GL+R ++F+ RGYK STY
Sbjct: 157 RLAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYAT 216
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM-------PTDSEIAE 252
WWI+QA+ RA+A+++RTIR+P + E N + R RRM PT E+A
Sbjct: 217 WWIRQAMSRALADQARTIRVP-------VHVVELINRVVRVQRRMLQERGCEPTPQEVAA 269
Query: 253 MLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELK 312
L++ V + + P+SL V + + + D+I D P L++Q L+
Sbjct: 270 HLDLAPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLRQHLE 329
Query: 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372
+L TL ERE +++L +GL P + +EIGRL ++RERIRQI L+KL+ +
Sbjct: 330 AVLSTLGERERKVVQLRYGLADGRPRTLEEIGRLFGVTRERIRQIESKTLSKLRDHAYAD 389
Query: 373 NLKVYM 378
L+ Y+
Sbjct: 390 QLRGYL 395
>sp|Q4UJT1|RPOD_RICFE RNA polymerase sigma factor RpoD OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=rpoD PE=3 SV=1
Length = 635
Score = 162 bits (410), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 180/360 (50%), Gaps = 30/360 (8%)
Query: 38 SNKYNININLVTNEALALHPVIESATDAAALASAAVRT-AKDAVSFANGAEEVC-----F 91
S KYN N+ L+ NE +H + + R ++F AE+ F
Sbjct: 249 SKKYNNNLELLINEVSEIHFNSKRTEEILGKMYGINRDLINKEIAFLKLAEKYGVTRQNF 308
Query: 92 DDGECESVL------KMMRRRSRRKKR--TKESDFLDKENGEL------------DYNLV 131
D SV+ KM++ + K TKESD++D+ EL D+ +
Sbjct: 309 LDEYIGSVINAAWKEKMLKNKKVAWKELITKESDYIDQMIAELSVIESNTGLLVNDFKKL 368
Query: 132 KYKILCKERES---QERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
I ER++ ++ +I + LV+SIA Y +GL DLIQEG+IGL++ +F
Sbjct: 369 VNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEY 428
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
RGYK STY WWI+QAI RAIA+++RTIR+P M + KI + + L PT +
Sbjct: 429 RRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTAT 488
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAV-TDRGCMTMQDIIPGPDETMPERMVQKQLM 307
EIA L++ + VR ++ + PISL+ V D + D I + P + +
Sbjct: 489 EIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNL 548
Query: 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
++ +L TL+ RE +LR+ FG+ T + +E+G+ ++RERIRQI AL KLQ
Sbjct: 549 REVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQH 608
>sp|Q1RKH7|RPOD_RICBR RNA polymerase sigma factor RpoD OS=Rickettsia bellii (strain
RML369-C) GN=rpoD PE=3 SV=1
Length = 641
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 120/372 (32%), Positives = 188/372 (50%), Gaps = 38/372 (10%)
Query: 31 SSSPSSCSN--KYNININLVTNEALALHPVIESATDAAALASAAVRTAKDAV----SFAN 84
S+ P N KYN N+ L+ +E +H ++ + S R +D + +F
Sbjct: 246 SAGPKILQNSKKYNDNLELLISEVSEIHF---NSKRTEEILSEMYRINRDLINKETAFLK 302
Query: 85 GAEEVC-----FDDGECESVL------KMMRRRSRRKKR--TKESDFLDKENGEL----- 126
AE+ F D +V+ KM++ + K TKESD++D+ EL
Sbjct: 303 LAEKYGITRQNFLDEYIGAVINAAWKEKMLKNKKAGWKELLTKESDYIDQMIAELSAIEI 362
Query: 127 -------DYNLVKYKILCKERES---QERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGS 176
D+ + I ER++ ++ +I + LV+SIA Y +GL DLIQEG+
Sbjct: 363 NTGLLVNDFKKLVNAIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGN 422
Query: 177 IGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNV 236
IGL++ +F RGYK STY WWI+QAI RAIA+++RTIR+P M + KI +
Sbjct: 423 IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKIIRTSRQ 482
Query: 237 LSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMT-MQDIIPGPDE 295
+ L PT +EIA L++ + VR ++ + PISL+ V D + + D I +
Sbjct: 483 MLNELGYEPTPAEIAARLSMPIDKVRKVMKIAKEPISLENPVGDGDDNSYLGDFIEDKNA 542
Query: 296 TMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIR 355
P + +++ +L TL+ RE +LR+ FG+ T + +E+G+ ++RERIR
Sbjct: 543 VAPIDAAIQSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIR 602
Query: 356 QIRGIALTKLQQ 367
QI AL KLQ
Sbjct: 603 QIESKALRKLQH 614
>sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=sigC PE=3 SV=1
Length = 404
Score = 161 bits (407), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 130/220 (59%), Gaps = 1/220 (0%)
Query: 146 IIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQA 205
+I++ LVVS+A YQ +GL L DLIQEG++GL R ++F+P +GY+ STY YWWI+Q
Sbjct: 169 MIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWIRQG 228
Query: 206 IIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAI 265
I RAIA +SR IRLP + + KI A +S+ P E+AE L + VR +
Sbjct: 229 ITRAIATQSRMIRLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQVREVL 288
Query: 266 ERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADI 325
+ +SL+ V + D++ D PE + ++ ++ +++E+L L+ RE ++
Sbjct: 289 TQVPRSVSLELKVGQDKDTELMDLLE-TDTQSPEDELMREALQNDMQEILLDLTPREQEV 347
Query: 326 LRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKL 365
+ L FG S EIGR+L+LSRER+RQI AL KL
Sbjct: 348 IALRFGFQDGVAHSLSEIGRILNLSRERVRQIEAKALQKL 387
>sp|P33451|RPOD_RICPR RNA polymerase sigma factor RpoD OS=Rickettsia prowazekii (strain
Madrid E) GN=rpoD PE=3 SV=1
Length = 635
Score = 161 bits (407), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 179/360 (49%), Gaps = 30/360 (8%)
Query: 38 SNKYNININLVTNEALALHPVIESATDAAALASAAVR------TAKDAVSFANGAEEVCF 91
S KYN N+ L+ NE +H + + R TA ++ G F
Sbjct: 249 SKKYNNNLELLINEVSEIHFNSKRTEEILGKMYGINRDLINKETAFLKLAEKYGVTRQNF 308
Query: 92 DDGECESVL------KMMRRRSRRKKR--TKESDFLDKENGEL------------DYNLV 131
D SV+ KM++ + K TKESD++D+ EL D+ +
Sbjct: 309 LDEYIGSVINAAWKEKMLKNKKVAWKELITKESDYIDQMINELSVIESNTGLLVNDFKKL 368
Query: 132 KYKILCKERES---QERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNP 188
I ER++ ++ +I + LV+SIA Y +GL DLIQEG+IGL++ +F
Sbjct: 369 VNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLMKAVDKFEY 428
Query: 189 ERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDS 248
RGYK STY WWI+QAI RAIA+++RTIR+P M + KI + + L PT +
Sbjct: 429 RRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTAT 488
Query: 249 EIAEMLNIHVSTVRLAIERTRHPISLDGAV-TDRGCMTMQDIIPGPDETMPERMVQKQLM 307
EIA L++ + VR ++ + PISL+ V D + D I + P + +
Sbjct: 489 EIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNL 548
Query: 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
++ +L TL+ RE +LR+ FG+ T + +E+G+ ++RERIRQI AL KLQ
Sbjct: 549 REVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIESKALRKLQH 608
>sp|D5AQI9|RPOD_RHOCB RNA polymerase sigma factor rpoD OS=Rhodobacter capsulatus (strain
ATCC BAA-309 / NBRC 16581 / SB1003) GN=rpoD PE=3 SV=1
Length = 674
Score = 161 bits (407), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 139/239 (58%)
Query: 140 RESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVY 199
R++++ ++ + LV+SIA Y +GL DLIQEG+IGL++ +F RGYK STY
Sbjct: 434 RQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT 493
Query: 200 WWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVS 259
WWI+QAI R+IA+++RTIR+P M + K+ + + R PT E+AE L + +
Sbjct: 494 WWIRQAITRSIADQARTIRIPVHMIETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLE 553
Query: 260 TVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLS 319
VR ++ + PISL+ + D + D I + +P ++ +K+ +L +L+
Sbjct: 554 KVRKVMKIAKEPISLETPIGDEEDSQLGDFIEDKNAILPLDSAIQENLKETTTRVLASLT 613
Query: 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
RE +LR+ FG+ T + +E+G+ S++RERIRQI AL KL+ + L+ ++
Sbjct: 614 PREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL 672
>sp|P17531|RPOD_MYXXA RNA polymerase sigma factor RpoD OS=Myxococcus xanthus GN=rpoD PE=3
SV=1
Length = 708
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 153/271 (56%), Gaps = 1/271 (0%)
Query: 108 RRKKRTKESDFLDKENGELDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLS 167
R+ K+ +E L E+ +Y+ ++ ER E ++ + LVVSIA Y +GL
Sbjct: 437 RKIKKVEEEANLPVESLRRNYDAIRLGERRAERAKSE-LVEANLRLVVSIAKKYTNRGLQ 495
Query: 168 LKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMV 227
DLIQEG+IGL++ +F +RGYK STY WWI+QAI RAIA+++RTIR+P M +
Sbjct: 496 FLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETI 555
Query: 228 AKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQ 287
K+ + L + + R PT EIAE + + + VR ++ + PISL+ + + +
Sbjct: 556 NKLIRTSRYLVQEIGREPTPEEIAEKMELPLDKVRKVLKIAKEPISLETPIGEEEDSHLG 615
Query: 288 DIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLL 347
D I P V + ++ +++L TL+ RE +LR+ FG+ ++ + +E+G+
Sbjct: 616 DFIEDKSLVSPADAVINMNLAEQTRKVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDF 675
Query: 348 SLSRERIRQIRGIALTKLQQTNILNNLKVYM 378
++RERIRQI AL KL+ + L+ ++
Sbjct: 676 EVTRERIRQIEAKALRKLRHPSRSKRLRSFV 706
>sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor RpoD OS=Chlamydia pneumoniae GN=rpoD
PE=3 SV=1
Length = 572
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 133/230 (57%)
Query: 138 KERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTY 197
K +E+++ ++ S LV+SIA Y +GLS DLIQEG++GL++ ++F RGYK STY
Sbjct: 313 KSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFEYRRGYKFSTY 372
Query: 198 VYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIH 257
WWI+QA+ RAIA+++RTIR+P M + K+ L + PT E+AE L +
Sbjct: 373 ATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTPEELAEELGLT 432
Query: 258 VSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQT 317
VR + +HPISL V + + D + P ++K ++KE+L+T
Sbjct: 433 PDRVREIYKIAQHPISLQAEVGEGSESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKT 492
Query: 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367
L++RE +L FGL P + +E+G +++RERIRQI AL K++
Sbjct: 493 LTDRERFVLIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRH 542
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,473,952
Number of Sequences: 539616
Number of extensions: 5180571
Number of successful extensions: 21000
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 20733
Number of HSP's gapped (non-prelim): 208
length of query: 379
length of database: 191,569,459
effective HSP length: 119
effective length of query: 260
effective length of database: 127,355,155
effective search space: 33112340300
effective search space used: 33112340300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)