Query 046578
Match_columns 379
No_of_seqs 312 out of 1558
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 23:59:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046578.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046578hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a6h_F RNA polymerase sigma fa 100.0 8E-42 2.7E-46 343.1 29.8 251 127-378 169-422 (423)
2 1l9z_H Sigma factor SIGA; heli 100.0 9.8E-42 3.4E-46 341.7 30.1 251 127-378 184-437 (438)
3 3iyd_F RNA polymerase sigma fa 100.0 3.5E-43 1.2E-47 368.4 -1.4 331 48-378 252-611 (613)
4 1rp3_A RNA polymerase sigma fa 100.0 3.3E-32 1.1E-36 250.5 19.7 223 139-371 10-237 (239)
5 1l0o_C Sigma factor; bergerat 100.0 1.2E-32 4.2E-37 253.4 5.8 229 126-366 13-243 (243)
6 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 3.7E-27 1.3E-31 209.1 11.2 174 124-369 9-183 (184)
7 1or7_A Sigma-24, RNA polymeras 99.9 8.2E-27 2.8E-31 208.3 13.1 181 127-370 9-189 (194)
8 3ugo_A RNA polymerase sigma fa 99.9 2.6E-24 8.7E-29 201.0 10.5 144 131-274 100-245 (245)
9 3mzy_A RNA polymerase sigma-H 99.9 6.6E-23 2.3E-27 177.2 13.9 155 165-373 1-160 (164)
10 2lfw_A PHYR sigma-like domain; 99.8 1.2E-22 4E-27 176.9 -4.8 143 143-373 3-145 (157)
11 3n0r_A Response regulator; sig 99.8 4.3E-19 1.5E-23 169.2 6.0 145 136-370 16-160 (286)
12 1sig_A Sigma70, RNA polymerase 99.7 4.5E-18 1.5E-22 165.9 9.1 133 82-214 184-338 (339)
13 3t72_q RNA polymerase sigma fa 99.6 1.6E-14 5.4E-19 115.9 10.3 77 302-378 4-80 (99)
14 2o7g_A Probable RNA polymerase 99.4 3.5E-13 1.2E-17 109.8 8.1 85 128-215 11-95 (112)
15 3hug_A RNA polymerase sigma fa 99.4 2E-12 6.9E-17 102.0 11.2 76 294-373 14-89 (92)
16 1tty_A Sigma-A, RNA polymerase 99.4 1.1E-12 3.7E-17 102.6 7.7 69 310-378 11-79 (87)
17 2p7v_B Sigma-70, RNA polymeras 99.4 5.7E-13 1.9E-17 99.2 5.3 65 314-378 2-66 (68)
18 1h3l_A RNA polymerase sigma fa 99.3 5.9E-13 2E-17 103.5 4.7 80 133-214 4-83 (87)
19 1ku3_A Sigma factor SIGA; heli 99.3 5.3E-13 1.8E-17 100.8 4.1 68 311-378 4-72 (73)
20 3clo_A Transcriptional regulat 99.1 1.5E-14 5.2E-19 135.5 -16.4 159 129-372 85-247 (258)
21 2o8x_A Probable RNA polymerase 99.1 1.1E-10 3.9E-15 86.5 7.2 63 308-374 6-68 (70)
22 1xsv_A Hypothetical UPF0122 pr 99.0 1.4E-09 4.8E-14 89.1 9.9 69 302-374 9-78 (113)
23 1s7o_A Hypothetical UPF0122 pr 98.9 6.2E-09 2.1E-13 85.3 9.2 62 309-374 13-75 (113)
24 2rnj_A Response regulator prot 98.7 4.9E-09 1.7E-13 82.3 3.7 59 307-370 19-77 (91)
25 3c57_A Two component transcrip 98.7 1.9E-08 6.6E-13 79.6 6.8 58 309-371 19-76 (95)
26 1x3u_A Transcriptional regulat 98.7 2.5E-08 8.5E-13 75.6 6.1 58 309-371 8-65 (79)
27 1jhg_A Trp operon repressor; c 98.6 2.7E-08 9.4E-13 79.3 5.5 64 306-370 23-90 (101)
28 1je8_A Nitrate/nitrite respons 98.6 2.2E-08 7.6E-13 77.0 4.5 57 311-372 15-71 (82)
29 1fse_A GERE; helix-turn-helix 98.4 2.8E-07 9.5E-12 68.6 5.0 57 311-372 5-61 (74)
30 3ulq_B Transcriptional regulat 98.3 1E-06 3.5E-11 69.0 6.3 51 313-368 25-75 (90)
31 1p4w_A RCSB; solution structur 98.2 1.7E-06 5.8E-11 69.0 6.2 48 316-368 33-80 (99)
32 2jpc_A SSRB; DNA binding prote 98.2 1.6E-06 5.6E-11 62.1 4.9 46 320-370 1-46 (61)
33 2q0o_A Probable transcriptiona 97.8 3.6E-05 1.2E-09 70.3 7.0 47 317-368 175-221 (236)
34 1l3l_A Transcriptional activat 97.8 3.6E-05 1.2E-09 70.2 6.7 47 317-368 173-219 (234)
35 3szt_A QCSR, quorum-sensing co 97.7 5.5E-05 1.9E-09 69.4 6.3 48 316-368 174-221 (237)
36 3qp6_A CVIR transcriptional re 97.5 9.6E-05 3.3E-09 69.0 6.3 47 317-368 197-243 (265)
37 2w7n_A TRFB transcriptional re 97.4 0.00034 1.2E-08 55.6 7.0 46 317-366 18-63 (101)
38 1tc3_C Protein (TC3 transposas 97.3 0.0003 1E-08 47.1 5.2 40 317-360 5-44 (51)
39 2x48_A CAG38821; archeal virus 97.1 0.00035 1.2E-08 48.6 3.2 38 319-361 18-55 (55)
40 1yio_A Response regulatory pro 97.0 0.0021 7.1E-08 56.3 8.4 53 311-368 136-188 (208)
41 1a04_A Nitrate/nitrite respons 96.9 0.0018 6.2E-08 57.1 6.9 48 316-368 153-200 (215)
42 3c3w_A Two component transcrip 96.7 0.0023 7.9E-08 57.2 6.3 47 316-367 148-194 (225)
43 3klo_A Transcriptional regulat 96.3 0.0037 1.3E-07 55.7 5.0 47 316-367 158-204 (225)
44 3p7n_A Sensor histidine kinase 95.8 0.024 8.2E-07 51.1 8.2 56 308-368 189-244 (258)
45 3kor_A Possible Trp repressor; 95.5 0.012 4.1E-07 47.8 4.2 39 317-362 61-99 (119)
46 1p2f_A Response regulator; DRR 95.2 0.019 6.4E-07 50.6 5.0 50 317-367 145-197 (220)
47 1jko_C HIN recombinase, DNA-in 95.2 0.0099 3.4E-07 39.8 2.3 25 336-360 20-44 (52)
48 2gwr_A DNA-binding response re 95.1 0.026 8.8E-07 50.6 5.5 50 317-367 153-207 (238)
49 2oqr_A Sensory transduction pr 94.9 0.023 7.7E-07 50.4 4.7 50 317-367 156-210 (230)
50 1kgs_A DRRD, DNA binding respo 94.6 0.03 1E-06 49.3 4.8 50 317-367 151-205 (225)
51 1qgp_A Protein (double strande 94.5 0.054 1.9E-06 40.5 5.2 41 320-360 14-54 (77)
52 1ys7_A Transcriptional regulat 94.3 0.029 9.9E-07 49.7 3.9 51 317-368 159-214 (233)
53 1zx4_A P1 PARB, plasmid partit 93.7 0.087 3E-06 46.5 5.7 36 322-362 14-49 (192)
54 3q9s_A DNA-binding response re 93.6 0.048 1.6E-06 49.5 3.9 51 317-368 182-237 (249)
55 1qbj_A Protein (double-strande 93.5 0.17 5.8E-06 38.2 6.3 40 321-360 11-50 (81)
56 2hqr_A Putative transcriptiona 93.5 0.024 8.3E-07 50.0 1.7 51 317-368 143-198 (223)
57 1u78_A TC3 transposase, transp 93.4 0.1 3.4E-06 42.6 5.3 40 317-360 6-45 (141)
58 3r0a_A Putative transcriptiona 93.4 0.2 6.8E-06 40.6 7.0 46 313-360 19-65 (123)
59 3ugo_A RNA polymerase sigma fa 93.3 0.015 5.2E-07 53.4 0.0 51 311-366 192-244 (245)
60 1pdn_C Protein (PRD paired); p 93.2 0.15 5.3E-06 40.5 6.0 42 317-362 17-58 (128)
61 3r0j_A Possible two component 92.8 0.17 5.7E-06 45.5 6.3 50 317-367 176-230 (250)
62 2dbb_A Putative HTH-type trans 92.5 0.27 9.1E-06 41.0 6.7 42 316-360 5-46 (151)
63 1oyi_A Double-stranded RNA-bin 92.4 0.13 4.4E-06 39.0 4.1 26 336-361 29-54 (82)
64 1k78_A Paired box protein PAX5 92.2 0.29 9.8E-06 40.6 6.5 42 317-362 32-73 (149)
65 2elh_A CG11849-PA, LD40883P; s 92.0 0.3 1E-05 37.0 5.9 27 336-362 37-63 (87)
66 1sfx_A Conserved hypothetical 91.9 0.49 1.7E-05 36.2 7.2 42 317-361 17-58 (109)
67 2cfx_A HTH-type transcriptiona 91.9 0.31 1.1E-05 40.4 6.3 41 317-360 2-42 (144)
68 2o3f_A Putative HTH-type trans 91.7 0.42 1.4E-05 38.1 6.7 52 309-360 10-62 (111)
69 2cyy_A Putative HTH-type trans 91.6 0.4 1.4E-05 40.0 6.8 42 317-361 4-45 (151)
70 2d1h_A ST1889, 109AA long hypo 91.5 0.45 1.5E-05 36.5 6.6 45 314-360 15-59 (109)
71 2cg4_A Regulatory protein ASNC 91.3 0.45 1.5E-05 39.7 6.8 42 317-361 5-46 (152)
72 2jn6_A Protein CGL2762, transp 91.3 0.36 1.2E-05 37.0 5.7 43 317-361 5-47 (97)
73 3k2z_A LEXA repressor; winged 91.2 0.29 9.9E-06 42.9 5.7 43 317-359 2-46 (196)
74 3ech_A MEXR, multidrug resista 91.1 0.52 1.8E-05 38.3 6.9 51 308-361 21-75 (142)
75 2w48_A Sorbitol operon regulat 91.0 0.27 9.4E-06 46.4 5.8 36 324-363 12-47 (315)
76 2heo_A Z-DNA binding protein 1 90.9 0.37 1.3E-05 34.7 5.2 40 318-359 8-47 (67)
77 2w25_A Probable transcriptiona 90.9 0.42 1.4E-05 39.8 6.2 41 317-360 4-44 (150)
78 2glo_A Brinker CG9653-PA; prot 90.9 0.36 1.2E-05 33.6 4.9 47 318-369 6-56 (59)
79 3eco_A MEPR; mutlidrug efflux 90.8 0.8 2.7E-05 36.9 7.8 53 308-361 17-71 (139)
80 3bro_A Transcriptional regulat 90.8 1.1 3.7E-05 36.1 8.5 52 309-361 21-74 (141)
81 2p5v_A Transcriptional regulat 90.7 0.43 1.5E-05 40.3 6.2 41 317-360 7-47 (162)
82 1i1g_A Transcriptional regulat 90.7 0.43 1.5E-05 39.0 6.0 41 318-361 2-42 (141)
83 1ku9_A Hypothetical protein MJ 90.6 0.76 2.6E-05 37.2 7.5 42 317-360 23-64 (152)
84 3nqo_A MARR-family transcripti 90.6 0.72 2.5E-05 39.8 7.6 53 308-361 29-81 (189)
85 2pn6_A ST1022, 150AA long hypo 90.4 0.49 1.7E-05 39.3 6.2 40 318-360 1-40 (150)
86 3frw_A Putative Trp repressor 90.4 0.52 1.8E-05 37.4 5.8 40 318-357 37-78 (107)
87 4hbl_A Transcriptional regulat 90.3 1.1 3.7E-05 36.7 8.3 42 317-361 38-79 (149)
88 1y0u_A Arsenical resistance op 90.2 2.1 7.1E-05 32.5 9.3 37 319-360 30-66 (96)
89 3bpv_A Transcriptional regulat 90.2 0.98 3.3E-05 36.2 7.8 49 310-361 17-67 (138)
90 3i4p_A Transcriptional regulat 90.1 0.53 1.8E-05 39.9 6.2 41 318-361 1-41 (162)
91 1r1u_A CZRA, repressor protein 90.0 1.1 3.9E-05 34.8 7.7 46 311-360 16-62 (106)
92 3iwf_A Transcription regulator 90.0 0.77 2.6E-05 36.4 6.6 62 309-370 6-72 (107)
93 2e1c_A Putative HTH-type trans 89.9 0.55 1.9E-05 40.3 6.2 41 317-360 24-64 (171)
94 3bdd_A Regulatory protein MARR 89.8 1.1 3.6E-05 36.1 7.7 42 317-361 28-69 (142)
95 2nnn_A Probable transcriptiona 89.8 0.81 2.8E-05 36.7 6.9 49 310-361 27-76 (140)
96 2dk5_A DNA-directed RNA polyme 89.7 0.26 9E-06 38.0 3.6 44 316-360 16-59 (91)
97 3tgn_A ADC operon repressor AD 89.6 0.63 2.1E-05 37.8 6.1 41 317-361 35-75 (146)
98 3cdh_A Transcriptional regulat 89.5 1.3 4.3E-05 36.5 8.0 50 309-361 30-81 (155)
99 4b8x_A SCO5413, possible MARR- 89.5 0.88 3E-05 37.6 7.0 53 308-361 21-75 (147)
100 1uxc_A FRUR (1-57), fructose r 89.4 0.29 9.9E-06 35.2 3.4 23 338-360 1-23 (65)
101 1jgs_A Multiple antibiotic res 89.4 1.2 4.2E-05 35.6 7.8 52 308-362 20-73 (138)
102 3hsr_A HTH-type transcriptiona 89.4 0.81 2.8E-05 37.1 6.7 50 309-361 23-74 (140)
103 2ia0_A Putative HTH-type trans 89.3 0.66 2.3E-05 39.7 6.2 42 316-360 13-54 (171)
104 2fa5_A Transcriptional regulat 89.2 1.5 5.2E-05 36.2 8.4 51 309-362 35-88 (162)
105 2rdp_A Putative transcriptiona 89.1 1.3 4.3E-05 36.1 7.7 50 310-362 30-81 (150)
106 1p6r_A Penicillinase repressor 89.1 0.55 1.9E-05 34.7 4.9 43 316-361 5-51 (82)
107 3g3z_A NMB1585, transcriptiona 89.1 1.2 4.2E-05 36.0 7.6 50 309-361 18-69 (145)
108 2qww_A Transcriptional regulat 89.1 1.3 4.3E-05 36.4 7.7 42 317-361 38-79 (154)
109 3bj6_A Transcriptional regulat 88.8 1.3 4.6E-05 36.0 7.7 42 317-361 37-78 (152)
110 3nrv_A Putative transcriptiona 88.8 0.81 2.8E-05 37.3 6.3 43 317-362 37-79 (148)
111 2p5k_A Arginine repressor; DNA 88.7 0.59 2E-05 32.6 4.7 24 336-359 18-46 (64)
112 2htj_A P fimbrial regulatory p 88.7 0.97 3.3E-05 33.4 6.1 25 336-360 13-37 (81)
113 2gxg_A 146AA long hypothetical 88.7 1.6 5.6E-05 35.1 8.1 47 311-361 26-74 (146)
114 2x4h_A Hypothetical protein SS 88.7 0.8 2.7E-05 37.2 6.1 47 315-361 8-55 (139)
115 1jhf_A LEXA repressor; LEXA SO 88.7 0.31 1E-05 42.7 3.7 45 316-360 2-49 (202)
116 2k27_A Paired box protein PAX- 88.7 0.26 8.8E-06 41.5 3.1 40 317-360 25-64 (159)
117 2pex_A Transcriptional regulat 88.6 1.2 4E-05 36.6 7.2 51 309-362 34-86 (153)
118 3oop_A LIN2960 protein; protei 88.5 0.98 3.3E-05 36.6 6.6 50 309-361 24-75 (143)
119 2lkp_A Transcriptional regulat 88.5 1.8 6.2E-05 34.1 8.0 40 318-361 30-69 (119)
120 3jth_A Transcription activator 88.4 0.84 2.9E-05 34.8 5.7 46 311-360 13-59 (98)
121 1sfu_A 34L protein; protein/Z- 88.2 0.95 3.3E-05 33.5 5.5 27 336-362 28-54 (75)
122 3k0l_A Repressor protein; heli 88.0 1.3 4.4E-05 36.9 7.1 50 309-361 33-84 (162)
123 3s2w_A Transcriptional regulat 88.0 0.98 3.3E-05 37.4 6.3 51 308-361 36-88 (159)
124 2nyx_A Probable transcriptiona 87.9 1.2 4E-05 37.5 6.9 42 317-361 42-83 (168)
125 1s3j_A YUSO protein; structura 87.8 1.2 4E-05 36.5 6.7 42 317-361 34-75 (155)
126 3pqk_A Biofilm growth-associat 87.7 1.5 5.2E-05 33.6 6.9 46 311-360 13-59 (102)
127 3cuo_A Uncharacterized HTH-typ 87.7 0.9 3.1E-05 34.3 5.5 45 313-360 16-61 (99)
128 3fm5_A Transcriptional regulat 87.6 1.5 5.1E-05 35.8 7.2 51 308-360 25-77 (150)
129 2fbh_A Transcriptional regulat 87.4 1.4 4.6E-05 35.6 6.8 51 309-361 24-76 (146)
130 1lj9_A Transcriptional regulat 87.4 1.1 3.7E-05 36.2 6.2 50 309-361 16-67 (144)
131 3cjn_A Transcriptional regulat 87.3 0.86 2.9E-05 37.8 5.6 42 317-361 49-90 (162)
132 2a61_A Transcriptional regulat 87.3 0.91 3.1E-05 36.7 5.6 42 317-361 30-71 (145)
133 2zkz_A Transcriptional repress 87.1 1.1 3.7E-05 34.5 5.7 39 319-360 26-64 (99)
134 2l0k_A Stage III sporulation p 86.9 0.7 2.4E-05 35.7 4.4 38 320-361 7-44 (93)
135 2fbi_A Probable transcriptiona 86.7 0.79 2.7E-05 36.8 4.9 42 317-361 33-74 (142)
136 3f3x_A Transcriptional regulat 86.6 2.1 7.3E-05 34.5 7.5 42 317-362 34-75 (144)
137 3sqn_A Conserved domain protei 86.5 1.4 4.9E-05 44.2 7.6 108 242-367 30-138 (485)
138 3bja_A Transcriptional regulat 86.5 0.93 3.2E-05 36.3 5.2 49 310-361 21-71 (139)
139 3kp7_A Transcriptional regulat 86.5 1.3 4.5E-05 36.2 6.2 41 317-361 35-75 (151)
140 3e6m_A MARR family transcripti 86.5 1.5 5.2E-05 36.4 6.7 42 317-361 50-91 (161)
141 2eth_A Transcriptional regulat 86.4 0.91 3.1E-05 37.4 5.2 43 317-362 41-83 (154)
142 2oqg_A Possible transcriptiona 86.4 2 6.9E-05 33.4 7.0 46 311-360 11-57 (114)
143 2fu4_A Ferric uptake regulatio 86.0 2.2 7.5E-05 31.4 6.7 42 317-360 14-61 (83)
144 3o9x_A Uncharacterized HTH-typ 85.9 2.5 8.5E-05 34.1 7.6 39 316-360 69-107 (133)
145 2qvo_A Uncharacterized protein 85.8 0.73 2.5E-05 35.1 4.0 45 317-361 9-54 (95)
146 1q1h_A TFE, transcription fact 85.6 0.79 2.7E-05 35.9 4.2 42 317-360 15-56 (110)
147 1uly_A Hypothetical protein PH 85.4 1.5 5.1E-05 38.3 6.3 39 318-360 18-56 (192)
148 3hyi_A Protein DUF199/WHIA; la 85.2 1.3 4.4E-05 41.6 6.1 50 309-361 233-284 (295)
149 2jt1_A PEFI protein; solution 85.2 1.3 4.5E-05 32.9 5.0 25 336-360 23-47 (77)
150 2kko_A Possible transcriptiona 85.1 1.2 4.1E-05 34.9 5.1 46 311-360 15-61 (108)
151 2bv6_A MGRA, HTH-type transcri 85.1 1.2 4.1E-05 35.9 5.2 42 317-361 34-75 (142)
152 1tbx_A ORF F-93, hypothetical 85.1 0.78 2.7E-05 35.0 3.9 42 317-361 5-50 (99)
153 4aik_A Transcriptional regulat 85.1 3 0.0001 34.5 7.8 50 310-361 19-70 (151)
154 2frh_A SARA, staphylococcal ac 85.0 0.85 2.9E-05 36.7 4.2 50 310-360 25-76 (127)
155 3deu_A Transcriptional regulat 84.9 2.4 8.1E-05 35.6 7.2 51 309-361 40-92 (166)
156 4fx0_A Probable transcriptiona 84.9 3 0.0001 34.3 7.8 53 309-361 20-76 (148)
157 1u2w_A CADC repressor, cadmium 84.8 2.5 8.5E-05 33.8 7.0 39 319-360 41-79 (122)
158 1xmk_A Double-stranded RNA-spe 84.8 0.74 2.5E-05 34.5 3.4 38 320-360 11-49 (79)
159 2xi8_A Putative transcription 84.6 0.7 2.4E-05 31.9 3.1 24 336-359 13-36 (66)
160 1okr_A MECI, methicillin resis 84.5 1.2 4E-05 35.3 4.8 45 315-362 5-53 (123)
161 3u2r_A Regulatory protein MARR 84.5 1.5 5E-05 36.7 5.7 53 308-361 32-86 (168)
162 3kz3_A Repressor protein CI; f 84.5 0.64 2.2E-05 34.1 3.0 24 336-359 24-47 (80)
163 1ub9_A Hypothetical protein PH 84.3 1.1 3.7E-05 33.9 4.4 39 319-360 15-53 (100)
164 1r1t_A Transcriptional repress 84.3 2.7 9.1E-05 33.7 6.9 38 319-360 45-82 (122)
165 2fxa_A Protease production reg 83.9 2.5 8.6E-05 37.1 7.2 42 317-361 45-86 (207)
166 1z91_A Organic hydroperoxide r 83.8 1.1 3.9E-05 36.3 4.6 44 317-363 37-80 (147)
167 1u78_A TC3 transposase, transp 83.7 14 0.00048 29.3 11.3 77 245-360 23-102 (141)
168 3omt_A Uncharacterized protein 83.6 0.77 2.6E-05 32.8 3.0 25 336-360 20-44 (73)
169 2wte_A CSA3; antiviral protein 83.4 2.2 7.4E-05 38.9 6.6 44 314-360 146-189 (244)
170 1r69_A Repressor protein CI; g 83.4 0.8 2.7E-05 32.0 3.0 25 336-360 13-37 (69)
171 1hlv_A CENP-B, major centromer 83.3 1.5 5.2E-05 35.2 5.1 45 317-365 7-53 (131)
172 1zug_A Phage 434 CRO protein; 83.1 0.82 2.8E-05 32.1 3.0 24 336-359 15-38 (71)
173 3boq_A Transcriptional regulat 83.1 1.8 6.2E-05 35.6 5.6 44 317-362 44-87 (160)
174 2r1j_L Repressor protein C2; p 83.0 0.85 2.9E-05 31.7 3.0 24 336-359 17-40 (68)
175 3fmy_A HTH-type transcriptiona 82.9 1.2 4.1E-05 32.1 3.9 37 318-360 11-47 (73)
176 1gdt_A GD resolvase, protein ( 82.8 1.2 4E-05 38.4 4.4 24 336-359 157-180 (183)
177 2r0q_C Putative transposon TN5 82.8 1 3.5E-05 39.7 4.1 32 323-359 166-197 (209)
178 2a6c_A Helix-turn-helix motif; 82.8 1.5 5.2E-05 32.3 4.5 24 336-359 30-53 (83)
179 2k9q_A Uncharacterized protein 82.7 0.85 2.9E-05 33.0 3.0 24 336-359 14-37 (77)
180 3qq6_A HTH-type transcriptiona 82.6 0.92 3.1E-05 33.2 3.2 25 336-360 22-46 (78)
181 2g9w_A Conserved hypothetical 82.5 2 6.8E-05 35.1 5.5 45 315-361 4-52 (138)
182 2o0m_A Transcriptional regulat 82.3 0.26 9E-06 47.2 0.0 43 318-363 18-60 (345)
183 2l8n_A Transcriptional repress 82.1 0.59 2E-05 33.8 1.9 22 338-359 10-31 (67)
184 1sd4_A Penicillinase repressor 82.0 1.7 5.9E-05 34.4 4.9 43 316-361 6-52 (126)
185 2fbk_A Transcriptional regulat 82.0 1.9 6.4E-05 36.6 5.4 53 309-361 56-110 (181)
186 3jw4_A Transcriptional regulat 82.0 0.96 3.3E-05 36.9 3.4 44 317-361 38-81 (148)
187 1on2_A Transcriptional regulat 82.0 1.6 5.6E-05 35.4 4.8 43 318-360 2-45 (142)
188 2hr3_A Probable transcriptiona 81.3 1.7 5.8E-05 35.2 4.7 42 318-361 33-74 (147)
189 3f6w_A XRE-family like protein 81.3 1 3.4E-05 33.0 3.0 24 336-359 26-49 (83)
190 1neq_A DNA-binding protein NER 81.3 1.1 3.6E-05 33.0 3.1 25 336-360 21-45 (74)
191 3t76_A VANU, transcriptional r 81.3 1.1 3.7E-05 34.1 3.2 25 336-360 36-60 (88)
192 2hin_A GP39, repressor protein 81.2 1.3 4.5E-05 32.4 3.5 22 339-360 12-33 (71)
193 1adr_A P22 C2 repressor; trans 81.2 1.1 3.6E-05 32.0 3.0 24 336-359 17-40 (76)
194 2b5a_A C.BCLI; helix-turn-heli 81.1 1.1 3.7E-05 32.1 3.1 24 336-359 22-45 (77)
195 1y7y_A C.AHDI; helix-turn-heli 81.1 1.1 3.9E-05 31.6 3.2 25 336-360 25-49 (74)
196 2da4_A Hypothetical protein DK 80.8 4.4 0.00015 29.8 6.4 51 318-368 15-70 (80)
197 1z4h_A TORI, TOR inhibition pr 80.8 1.3 4.5E-05 31.5 3.3 24 338-361 11-34 (66)
198 2cw1_A SN4M; lambda CRO fold, 80.7 1.1 3.7E-05 32.2 2.8 22 338-359 14-35 (65)
199 2wiu_B HTH-type transcriptiona 80.6 1.4 4.7E-05 32.5 3.6 25 336-360 24-48 (88)
200 3bs3_A Putative DNA-binding pr 80.5 1.2 4.2E-05 31.7 3.2 24 336-359 22-45 (76)
201 3bd1_A CRO protein; transcript 80.5 1.4 4.8E-05 32.1 3.5 24 336-360 11-34 (79)
202 3eus_A DNA-binding protein; st 80.4 1.1 3.9E-05 33.3 3.0 24 336-359 26-49 (86)
203 2ao9_A Phage protein; structur 80.3 4.5 0.00015 34.2 7.0 47 314-360 20-71 (155)
204 1r71_A Transcriptional repress 80.3 2 7E-05 37.2 5.0 42 316-360 34-75 (178)
205 2jsc_A Transcriptional regulat 80.3 2 6.8E-05 34.1 4.7 38 319-360 20-57 (118)
206 3b7h_A Prophage LP1 protein 11 80.2 1.5 5E-05 31.5 3.5 25 336-360 19-43 (78)
207 3s8q_A R-M controller protein; 79.9 1.3 4.4E-05 32.3 3.2 25 336-360 23-47 (82)
208 2ef8_A C.ECOT38IS, putative tr 79.9 1.2 4.2E-05 32.4 3.1 24 336-359 22-45 (84)
209 3e7l_A Transcriptional regulat 79.8 2 6.9E-05 30.2 4.0 36 321-359 19-54 (63)
210 2ewt_A BLDD, putative DNA-bind 79.6 1.7 5.7E-05 30.6 3.6 25 336-360 20-46 (71)
211 1xn7_A Hypothetical protein YH 79.6 4.2 0.00014 30.1 5.9 25 336-360 15-39 (78)
212 1rzs_A Antirepressor, regulato 79.5 1 3.6E-05 31.5 2.4 21 338-358 11-31 (61)
213 2vn2_A DNAD, chromosome replic 79.2 2.7 9.2E-05 34.1 5.2 46 317-362 29-76 (128)
214 1zs4_A Regulatory protein CII; 78.8 4.2 0.00014 30.6 5.6 37 338-374 25-61 (83)
215 3f6o_A Probable transcriptiona 78.7 2.2 7.4E-05 33.9 4.4 45 312-360 9-54 (118)
216 2ecc_A Homeobox and leucine zi 78.3 4.1 0.00014 30.1 5.4 51 318-368 10-61 (76)
217 3a03_A T-cell leukemia homeobo 78.0 5 0.00017 27.3 5.6 52 317-368 3-55 (56)
218 4ghj_A Probable transcriptiona 78.0 2.1 7E-05 33.4 3.9 24 336-359 48-71 (101)
219 2kpj_A SOS-response transcript 77.8 2.7 9.2E-05 31.6 4.5 25 336-360 21-45 (94)
220 3b73_A PHIH1 repressor-like pr 77.8 2.3 7.8E-05 33.9 4.2 40 318-360 11-52 (111)
221 1lmb_3 Protein (lambda repress 77.6 1.5 5.2E-05 32.7 3.0 25 336-360 29-53 (92)
222 2v79_A DNA replication protein 77.6 3.1 0.00011 34.2 5.1 47 317-363 29-77 (135)
223 3mky_B Protein SOPB; partition 77.6 3.7 0.00013 35.8 5.8 49 312-361 18-66 (189)
224 1k61_A Mating-type protein alp 77.3 7.8 0.00027 26.6 6.5 52 317-368 4-59 (60)
225 1x57_A Endothelial differentia 77.3 3.5 0.00012 30.6 5.0 24 336-359 25-48 (91)
226 2rn7_A IS629 ORFA; helix, all 77.2 1.8 6.3E-05 33.6 3.5 25 338-362 31-55 (108)
227 3k2a_A Homeobox protein MEIS2; 77.1 7.4 0.00025 27.7 6.4 55 317-371 4-62 (67)
228 2ppx_A AGR_C_3184P, uncharacte 77.0 1.6 5.6E-05 33.3 3.1 24 336-359 42-65 (99)
229 2ict_A Antitoxin HIGA; helix-t 76.8 2.1 7E-05 32.2 3.6 25 336-360 20-44 (94)
230 3trb_A Virulence-associated pr 76.4 1.9 6.3E-05 33.8 3.3 24 336-359 26-49 (104)
231 1rr7_A Middle operon regulator 76.4 3.4 0.00012 33.8 5.0 39 320-364 81-119 (129)
232 2da1_A Alpha-fetoprotein enhan 76.2 8 0.00027 27.5 6.5 52 318-369 14-66 (70)
233 1j5y_A Transcriptional regulat 76.1 3.8 0.00013 35.3 5.5 39 320-360 21-59 (187)
234 3uj3_X DNA-invertase; helix-tu 75.8 0.55 1.9E-05 40.8 0.0 35 322-361 148-182 (193)
235 2hwv_A DNA-binding response re 75.4 7.7 0.00026 30.9 6.9 50 317-367 43-97 (121)
236 2k02_A Ferrous iron transport 75.3 3.7 0.00013 31.2 4.6 25 336-360 15-39 (87)
237 3mn2_A Probable ARAC family tr 75.2 25 0.00085 26.7 12.5 38 230-267 4-41 (108)
238 1fx7_A Iron-dependent represso 75.0 1.3 4.5E-05 39.6 2.3 43 317-360 3-47 (230)
239 2k4j_A Putative transcriptiona 74.9 5.7 0.00019 31.4 5.9 50 317-367 41-95 (115)
240 3op9_A PLI0006 protein; struct 74.9 2.3 8E-05 33.2 3.5 24 336-359 21-44 (114)
241 1g2h_A Transcriptional regulat 74.8 3.1 0.00011 29.1 3.8 22 338-359 34-55 (61)
242 2l1p_A DNA-binding protein SAT 74.7 2.1 7.1E-05 32.2 2.9 24 337-360 32-55 (83)
243 3mlf_A Transcriptional regulat 74.7 2.4 8.1E-05 33.4 3.5 24 336-359 35-58 (111)
244 1p4x_A Staphylococcal accessor 74.6 9.3 0.00032 34.7 8.0 44 317-361 155-198 (250)
245 3g5g_A Regulatory protein; tra 74.6 2.2 7.4E-05 32.9 3.2 25 336-360 40-64 (99)
246 4ich_A Transcriptional regulat 74.6 2.3 7.8E-05 39.3 3.9 25 334-358 137-161 (311)
247 1j1v_A Chromosomal replication 74.4 9 0.00031 29.3 6.7 31 336-366 45-76 (94)
248 1puf_B PRE-B-cell leukemia tra 74.4 5.2 0.00018 28.8 5.1 56 317-372 7-66 (73)
249 1x2n_A Homeobox protein pknox1 74.1 6 0.0002 28.5 5.4 55 317-371 13-71 (73)
250 2pij_A Prophage PFL 6 CRO; tra 73.8 2.9 0.0001 29.1 3.5 22 336-358 13-34 (67)
251 3kxa_A NGO0477 protein, putati 73.7 2.5 8.5E-05 34.9 3.5 25 336-360 80-104 (141)
252 1ntc_A Protein (nitrogen regul 73.5 2.4 8.2E-05 32.2 3.2 38 320-360 50-87 (91)
253 2o38_A Hypothetical protein; a 73.4 3.1 0.00011 33.3 4.0 24 336-359 52-75 (120)
254 3cec_A Putative antidote prote 73.4 2.2 7.6E-05 32.7 3.0 25 336-360 30-54 (104)
255 1j9i_A GPNU1 DBD;, terminase s 73.3 1.9 6.4E-05 30.8 2.3 25 338-362 3-27 (68)
256 2k4b_A Transcriptional regulat 73.3 1.2 4.1E-05 34.7 1.4 47 313-362 28-78 (99)
257 1b72_B Protein (PBX1); homeodo 73.2 6.4 0.00022 29.4 5.5 56 317-372 7-66 (87)
258 2wus_R RODZ, putative uncharac 73.2 2.9 9.8E-05 33.2 3.7 25 336-360 19-43 (112)
259 2jt1_A PEFI protein; solution 73.1 6.7 0.00023 29.0 5.4 27 241-267 21-47 (77)
260 1xwr_A Regulatory protein CII; 73.1 4 0.00014 31.7 4.3 34 338-371 24-57 (97)
261 2qq9_A Diphtheria toxin repres 73.0 1.5 5.3E-05 39.1 2.2 44 317-361 3-48 (226)
262 1b0n_A Protein (SINR protein); 72.9 2.3 8E-05 32.7 3.1 25 336-360 13-37 (111)
263 3a02_A Homeobox protein arista 72.8 7.9 0.00027 26.6 5.5 52 317-368 5-57 (60)
264 1umq_A Photosynthetic apparatu 72.7 3.1 0.00011 31.2 3.5 22 338-359 55-76 (81)
265 2yu3_A DNA-directed RNA polyme 72.7 5.3 0.00018 30.9 4.9 44 316-360 33-76 (95)
266 1yz8_P Pituitary homeobox 2; D 72.6 12 0.00043 26.3 6.7 54 317-370 9-63 (68)
267 3rjp_A COVR; winged helix-turn 72.5 8 0.00027 29.1 6.0 51 317-368 22-77 (96)
268 1gxq_A PHOB, phosphate regulon 72.4 7.8 0.00027 29.8 6.1 51 317-368 31-86 (106)
269 2pg4_A Uncharacterized protein 72.3 3.7 0.00013 30.9 4.0 27 336-362 29-56 (95)
270 3plo_X DNA-invertase; resolvas 72.2 0.77 2.6E-05 40.0 0.0 36 323-363 149-184 (193)
271 2eby_A Putative HTH-type trans 72.1 2.4 8.3E-05 33.0 3.0 25 336-360 23-47 (113)
272 2hzt_A Putative HTH-type trans 71.8 4.3 0.00015 31.5 4.4 45 312-360 5-51 (107)
273 1z7u_A Hypothetical protein EF 71.5 6 0.0002 30.9 5.2 46 311-360 12-59 (112)
274 3oou_A LIN2118 protein; protei 71.4 31 0.0011 26.2 12.5 38 230-267 7-44 (108)
275 1hkq_A REPA, replication prote 71.4 14 0.00047 29.9 7.6 58 311-368 12-78 (132)
276 1ig7_A Homeotic protein MSX-1; 71.3 8.6 0.00029 26.2 5.4 50 318-367 7-57 (58)
277 2auw_A Hypothetical protein NE 71.3 8.3 0.00029 33.0 6.4 36 318-359 90-125 (170)
278 2l49_A C protein; P2 bacteriop 71.3 2.3 7.8E-05 32.2 2.6 24 336-359 16-39 (99)
279 2dmq_A LIM/homeobox protein LH 71.0 9.1 0.00031 28.0 5.8 53 318-370 14-67 (80)
280 3lsg_A Two-component response 71.0 31 0.001 25.9 11.1 34 234-267 8-42 (103)
281 2hdd_A Protein (engrailed home 70.9 8.9 0.0003 26.5 5.4 51 317-367 9-60 (61)
282 2h8r_A Hepatocyte nuclear fact 70.7 5.6 0.00019 35.6 5.3 25 336-360 43-67 (221)
283 3lfp_A CSP231I C protein; tran 70.7 3.5 0.00012 31.2 3.5 25 336-360 13-41 (98)
284 1jgg_A Segmentation protein EV 70.6 8.8 0.0003 26.4 5.4 50 318-367 8-58 (60)
285 3vk0_A NHTF, transcriptional r 70.6 2.4 8.3E-05 33.2 2.7 24 336-359 33-56 (114)
286 2dmn_A Homeobox protein TGIF2L 70.5 6.5 0.00022 29.3 4.9 55 318-372 14-72 (83)
287 1vz0_A PARB, chromosome partit 70.5 5.7 0.0002 35.6 5.4 41 316-359 116-156 (230)
288 4bbr_M Transcription initiatio 70.4 10 0.00036 36.1 7.6 180 150-372 129-327 (345)
289 3f52_A CLP gene regulator (CLG 70.4 2.8 9.5E-05 32.9 3.0 25 336-360 40-64 (117)
290 3ivp_A Putative transposon-rel 70.4 3.6 0.00012 32.7 3.7 25 336-360 24-48 (126)
291 2dmu_A Homeobox protein goosec 70.2 13 0.00044 26.4 6.3 52 318-369 14-66 (70)
292 2k40_A Homeobox expressed in E 69.8 19 0.00064 25.3 7.1 53 317-369 7-60 (67)
293 1fjl_A Paired protein; DNA-bin 69.5 17 0.00058 26.6 7.1 53 318-370 25-78 (81)
294 2kfs_A Conserved hypothetical 69.4 2.7 9.1E-05 35.3 2.7 23 338-360 32-54 (148)
295 2jrt_A Uncharacterized protein 69.4 3.7 0.00013 31.7 3.4 39 322-363 37-75 (95)
296 1uhs_A HOP, homeodomain only p 69.4 14 0.00046 26.5 6.4 53 317-369 7-61 (72)
297 3bdn_A Lambda repressor; repre 69.4 3.2 0.00011 36.8 3.5 25 336-360 29-53 (236)
298 1ahd_P Antennapedia protein mu 69.3 14 0.00047 26.2 6.3 53 318-370 9-62 (68)
299 1nk2_P Homeobox protein VND; h 69.2 17 0.00058 26.3 7.0 55 318-372 16-71 (77)
300 2lk2_A Homeobox protein TGIF1; 68.7 7.6 0.00026 29.6 4.9 55 317-371 11-69 (89)
301 2ovg_A Phage lambda CRO; trans 68.6 4.1 0.00014 29.1 3.3 22 338-359 14-35 (66)
302 2cue_A Paired box protein PAX6 68.5 20 0.00069 26.1 7.3 53 318-370 14-67 (80)
303 2e1o_A Homeobox protein PRH; D 68.3 11 0.00037 26.9 5.6 52 318-369 14-66 (70)
304 2y75_A HTH-type transcriptiona 68.0 8.2 0.00028 30.8 5.5 24 336-359 25-48 (129)
305 2h1k_A IPF-1, pancreatic and d 67.8 12 0.0004 26.0 5.6 51 318-368 10-61 (63)
306 2pmu_A Response regulator PHOP 67.7 8.6 0.00029 29.9 5.4 50 317-367 34-88 (110)
307 3fym_A Putative uncharacterize 67.7 3.6 0.00012 33.3 3.2 25 336-360 15-39 (130)
308 1opc_A OMPR, OMPRC; transcript 67.6 4.7 0.00016 31.3 3.8 50 317-367 31-85 (110)
309 2zcw_A TTHA1359, transcription 67.6 28 0.00095 29.2 9.2 45 315-359 114-168 (202)
310 3f6v_A Possible transcriptiona 67.5 4.9 0.00017 33.5 4.1 38 319-360 57-94 (151)
311 2jvl_A TRMBF1; coactivator, he 67.5 3.3 0.00011 32.2 2.8 24 336-359 48-71 (107)
312 3oio_A Transcriptional regulat 67.4 40 0.0014 25.8 12.3 38 230-267 9-46 (113)
313 1pdn_C Protein (PRD paired); p 67.3 26 0.00088 26.9 8.3 23 245-267 34-56 (128)
314 3rkx_A Biotin-[acetyl-COA-carb 67.0 5.9 0.0002 37.4 5.0 40 320-360 3-42 (323)
315 2b0l_A GTP-sensing transcripti 66.8 4.6 0.00016 31.4 3.5 28 336-367 41-69 (102)
316 2da2_A Alpha-fetoprotein enhan 66.5 11 0.00037 26.8 5.3 52 318-369 14-66 (70)
317 1zq3_P PRD-4, homeotic bicoid 66.4 16 0.00054 25.8 6.1 54 317-370 8-62 (68)
318 2vz4_A Tipal, HTH-type transcr 66.1 3.6 0.00012 32.2 2.8 25 338-362 2-26 (108)
319 3b02_A Transcriptional regulat 65.8 32 0.0011 28.7 9.1 46 315-360 107-162 (195)
320 1bia_A BIRA bifunctional prote 65.7 10 0.00036 35.5 6.5 41 318-361 3-43 (321)
321 3rqi_A Response regulator prot 65.6 3.4 0.00012 34.8 2.7 39 318-359 140-178 (184)
322 3zq7_A KDP operon transcriptio 65.4 11 0.00037 28.7 5.5 50 317-367 28-82 (102)
323 1b72_A Protein (homeobox prote 65.2 24 0.00083 26.8 7.4 54 317-370 40-94 (97)
324 4a0z_A Transcription factor FA 64.8 8.1 0.00028 33.6 5.1 37 320-359 12-48 (190)
325 1y6u_A XIS, excisionase from t 64.7 4.5 0.00015 29.4 2.8 23 338-360 17-39 (70)
326 3nau_A Zinc fingers and homeob 64.5 5.6 0.00019 28.6 3.2 50 319-368 12-62 (66)
327 2h09_A Transcriptional regulat 64.5 8.1 0.00028 31.7 4.8 25 336-360 53-77 (155)
328 2dms_A Homeobox protein OTX2; 64.5 16 0.00056 26.6 6.1 53 318-370 14-67 (80)
329 2hi3_A Homeodomain-only protei 64.4 19 0.00067 25.7 6.4 53 318-370 9-63 (73)
330 1akh_A Protein (mating-type pr 64.3 9.3 0.00032 26.3 4.4 48 317-364 11-59 (61)
331 3ryp_A Catabolite gene activat 64.1 34 0.0011 28.7 9.0 27 337-367 167-193 (210)
332 3lsg_A Two-component response 63.9 18 0.0006 27.3 6.4 25 337-361 19-43 (103)
333 1hsj_A Fusion protein consisti 63.9 11 0.00039 36.8 6.7 52 308-360 390-443 (487)
334 1eto_A FIS, factor for inversi 63.6 7.2 0.00024 30.2 4.0 36 321-359 58-93 (98)
335 3egq_A TETR family transcripti 63.5 7.8 0.00027 31.5 4.6 25 334-358 21-45 (170)
336 2dmt_A Homeobox protein BARH-l 63.3 18 0.00063 26.4 6.2 52 318-369 24-76 (80)
337 3rkq_A Homeobox protein NKX-2. 63.2 19 0.00066 24.1 5.9 49 317-365 8-57 (58)
338 3vpr_A Transcriptional regulat 63.0 5.9 0.0002 33.0 3.8 25 334-358 20-44 (190)
339 2dn0_A Zinc fingers and homeob 62.8 12 0.0004 27.2 4.9 52 318-369 15-67 (76)
340 2da3_A Alpha-fetoprotein enhan 62.8 9 0.00031 27.9 4.3 29 340-368 47-75 (80)
341 1le8_B Mating-type protein alp 62.7 11 0.00037 27.9 4.8 53 318-370 9-65 (83)
342 3pvv_A Chromosomal replication 62.5 22 0.00076 27.5 6.7 32 336-367 49-80 (101)
343 1ftt_A TTF-1 HD, thyroid trans 62.5 15 0.00053 25.9 5.4 53 318-370 9-62 (68)
344 2oz6_A Virulence factor regula 62.3 6 0.0002 33.5 3.7 27 337-367 164-190 (207)
345 1bl0_A Protein (multiple antib 62.2 54 0.0019 25.7 9.4 38 230-267 13-50 (129)
346 1puf_A HOX-1.7, homeobox prote 62.1 27 0.00091 25.2 6.8 53 318-370 20-73 (77)
347 2ek5_A Predicted transcription 61.9 8 0.00027 31.3 4.2 28 336-367 26-54 (129)
348 2zcm_A Biofilm operon icaabcd 61.7 6 0.0002 32.9 3.6 24 335-358 25-48 (192)
349 2jzy_A Transcriptional regulat 61.5 8.6 0.00029 30.1 4.2 49 317-366 28-81 (112)
350 3hrs_A Metalloregulator SCAR; 61.1 9.3 0.00032 33.6 4.9 26 336-361 19-44 (214)
351 3tqn_A Transcriptional regulat 61.0 6.7 0.00023 30.8 3.5 28 336-367 31-59 (113)
352 2gau_A Transcriptional regulat 61.0 39 0.0013 28.9 9.0 45 315-359 148-202 (232)
353 3dv8_A Transcriptional regulat 60.9 7.8 0.00027 33.1 4.3 27 337-367 169-195 (220)
354 3iwz_A CAP-like, catabolite ac 60.7 43 0.0015 28.5 9.2 26 338-367 188-213 (230)
355 3mn2_A Probable ARAC family tr 60.5 13 0.00044 28.4 5.1 26 336-361 17-42 (108)
356 2fq4_A Transcriptional regulat 60.5 6.5 0.00022 32.9 3.6 26 334-359 29-54 (192)
357 3qkx_A Uncharacterized HTH-typ 60.2 6.8 0.00023 32.1 3.6 25 334-358 25-49 (188)
358 2djn_A Homeobox protein DLX-5; 60.2 17 0.00057 25.8 5.3 51 318-368 14-65 (70)
359 3e97_A Transcriptional regulat 60.2 7.1 0.00024 33.8 3.9 27 337-367 175-201 (231)
360 2p5t_A Putative transcriptiona 60.1 1.8 6.3E-05 36.2 0.0 24 336-359 13-36 (158)
361 3neu_A LIN1836 protein; struct 60.1 6.9 0.00024 31.4 3.5 23 336-358 35-58 (125)
362 3oou_A LIN2118 protein; protei 60.1 15 0.00051 28.1 5.4 26 336-361 20-45 (108)
363 2eh3_A Transcriptional regulat 60.1 6.9 0.00023 32.3 3.6 25 334-358 19-43 (179)
364 3iuo_A ATP-dependent DNA helic 60.0 15 0.00052 29.3 5.6 27 336-362 31-57 (122)
365 3bqz_B HTH-type transcriptiona 59.9 6.7 0.00023 32.4 3.6 25 334-358 19-43 (194)
366 1ft9_A Carbon monoxide oxidati 59.9 8.1 0.00028 33.3 4.2 23 337-359 163-185 (222)
367 3dkw_A DNR protein; CRP-FNR, H 59.8 7.2 0.00025 33.5 3.9 29 336-368 177-205 (227)
368 1mnm_C Protein (MAT alpha-2 tr 59.7 16 0.00055 27.2 5.3 50 317-366 33-86 (87)
369 1v4r_A Transcriptional repress 59.7 3.3 0.00011 31.8 1.4 23 336-358 33-56 (102)
370 2vi6_A Homeobox protein nanog; 59.7 19 0.00066 24.7 5.4 51 317-367 9-60 (62)
371 2fmy_A COOA, carbon monoxide o 59.3 8.5 0.00029 33.0 4.3 23 337-359 167-189 (220)
372 3by6_A Predicted transcription 59.3 7.4 0.00025 31.3 3.6 27 336-366 33-60 (126)
373 2p4w_A Transcriptional regulat 59.3 11 0.00039 32.9 5.1 38 319-360 14-51 (202)
374 4ham_A LMO2241 protein; struct 59.2 7.2 0.00025 31.6 3.5 28 336-367 36-64 (134)
375 4ev0_A Transcription regulator 59.2 8.2 0.00028 32.9 4.1 28 336-367 162-189 (216)
376 2cra_A Homeobox protein HOX-B1 59.1 8.8 0.0003 27.3 3.6 52 318-369 14-66 (70)
377 3qwg_A ESX-1 secretion-associa 58.8 7.1 0.00024 31.4 3.3 24 336-359 23-51 (123)
378 3mkl_A HTH-type transcriptiona 58.7 61 0.0021 25.0 11.5 33 234-266 13-45 (120)
379 1b8i_A Ultrabithorax, protein 58.7 16 0.00055 26.8 5.1 53 317-369 26-79 (81)
380 2ofy_A Putative XRE-family tra 58.5 6.4 0.00022 28.7 2.8 22 339-360 29-50 (86)
381 2xrn_A HTH-type transcriptiona 58.4 10 0.00035 33.9 4.7 26 336-361 20-45 (241)
382 2r5y_A Homeotic protein sex co 58.2 37 0.0013 25.1 7.2 52 317-368 34-86 (88)
383 3d0s_A Transcriptional regulat 58.1 9 0.00031 33.0 4.2 24 337-360 177-200 (227)
384 1r8d_A Transcription activator 58.1 4.8 0.00016 31.5 2.1 25 338-362 3-27 (109)
385 1y9q_A Transcriptional regulat 57.9 6.3 0.00022 33.6 3.1 25 336-360 23-47 (192)
386 4dyq_A Gene 1 protein; GP1, oc 57.8 8.4 0.00029 31.6 3.7 26 336-361 27-53 (140)
387 3e6c_C CPRK, cyclic nucleotide 57.7 8.2 0.00028 34.0 3.9 27 337-367 177-203 (250)
388 2obp_A Putative DNA-binding pr 57.7 23 0.00079 27.2 6.0 43 316-360 12-59 (96)
389 2bnm_A Epoxidase; oxidoreducta 57.7 6.6 0.00022 33.6 3.2 25 336-360 22-46 (198)
390 2f2e_A PA1607; transcription f 57.6 14 0.00048 30.3 5.1 25 336-360 36-60 (146)
391 1mkm_A ICLR transcriptional re 57.6 12 0.00042 33.5 5.1 25 336-360 22-46 (249)
392 3gbg_A TCP pilus virulence reg 57.6 90 0.0031 27.6 11.1 87 229-360 170-257 (276)
393 1bw5_A ISL-1HD, insulin gene e 57.6 12 0.00042 26.2 4.1 51 318-368 10-61 (66)
394 1ylf_A RRF2 family protein; st 57.4 17 0.00059 29.8 5.6 43 317-359 8-52 (149)
395 2d6y_A Putative TETR family re 57.4 8.3 0.00028 32.6 3.8 26 334-359 25-50 (202)
396 2fsw_A PG_0823 protein; alpha- 57.3 7.7 0.00026 29.9 3.2 25 336-360 37-62 (107)
397 2jml_A DNA binding domain/tran 57.3 5.5 0.00019 29.3 2.3 24 337-360 5-28 (81)
398 2m0c_A Homeobox protein arista 57.3 18 0.0006 25.9 5.0 52 318-369 16-68 (75)
399 1yyv_A Putative transcriptiona 57.2 12 0.00041 30.3 4.5 25 336-360 47-72 (131)
400 3fx3_A Cyclic nucleotide-bindi 57.2 6.7 0.00023 34.1 3.2 28 337-368 178-205 (237)
401 3knw_A Putative transcriptiona 57.1 8 0.00028 32.4 3.6 25 334-358 31-55 (212)
402 2ly9_A Zinc fingers and homeob 57.1 14 0.00047 26.5 4.4 53 318-370 13-66 (74)
403 3la7_A Global nitrogen regulat 56.9 8.6 0.00029 33.8 3.9 27 337-367 193-219 (243)
404 3lwj_A Putative TETR-family tr 56.8 8.1 0.00028 32.2 3.6 24 335-358 30-53 (202)
405 3r1f_A ESX-1 secretion-associa 56.6 7.7 0.00026 31.7 3.3 24 336-359 25-53 (135)
406 1ic8_A Hepatocyte nuclear fact 56.6 19 0.00063 31.5 5.9 24 336-359 42-65 (194)
407 2kt0_A Nanog, homeobox protein 56.6 19 0.00066 26.4 5.3 51 318-368 29-80 (84)
408 2wui_A MEXZ, transcriptional r 56.6 8.1 0.00028 32.8 3.6 26 334-359 28-53 (210)
409 2g7u_A Transcriptional regulat 56.5 15 0.00051 33.1 5.5 25 336-360 28-52 (257)
410 2dmp_A Zinc fingers and homeob 56.5 20 0.0007 26.8 5.4 51 318-368 20-71 (89)
411 2qtq_A Transcriptional regulat 56.3 9.1 0.00031 32.0 3.8 25 335-359 34-58 (213)
412 3vp5_A Transcriptional regulat 56.1 8.6 0.00029 32.2 3.6 24 334-357 29-52 (189)
413 3kz9_A SMCR; transcriptional r 56.0 8.6 0.00029 31.9 3.6 25 334-358 34-58 (206)
414 2nx4_A Transcriptional regulat 55.9 8.6 0.0003 32.2 3.6 25 334-358 27-51 (194)
415 3dpj_A Transcription regulator 55.9 8.7 0.0003 31.8 3.6 25 334-358 25-49 (194)
416 3ppb_A Putative TETR family tr 55.9 8.9 0.00031 31.5 3.7 25 334-358 26-50 (195)
417 3dew_A Transcriptional regulat 55.8 7.2 0.00025 32.4 3.1 25 335-359 26-50 (206)
418 3f1b_A TETR-like transcription 55.6 8.6 0.0003 31.9 3.5 24 335-358 32-55 (203)
419 3vib_A MTRR; helix-turn-helix 55.5 8.6 0.00029 32.5 3.6 25 334-358 27-51 (210)
420 1zyb_A Transcription regulator 55.2 10 0.00035 33.0 4.1 27 337-367 186-212 (232)
421 2g7s_A Transcriptional regulat 55.2 7.6 0.00026 31.9 3.1 24 335-358 26-49 (194)
422 3dn7_A Cyclic nucleotide bindi 55.1 4.3 0.00015 34.2 1.5 25 336-360 167-191 (194)
423 3on4_A Transcriptional regulat 55.1 7.6 0.00026 31.9 3.1 24 335-358 28-51 (191)
424 3bhq_A Transcriptional regulat 55.0 9.6 0.00033 32.3 3.8 25 334-358 29-53 (211)
425 1iuf_A Centromere ABP1 protein 55.0 5.8 0.0002 32.7 2.2 43 317-361 11-60 (144)
426 2l7z_A Homeobox protein HOX-A1 55.0 16 0.00054 26.3 4.4 53 318-370 14-67 (73)
427 3lwf_A LIN1550 protein, putati 54.8 24 0.00082 29.6 6.2 49 316-368 20-71 (159)
428 2ibd_A Possible transcriptiona 54.8 9 0.00031 32.3 3.6 25 334-358 31-55 (204)
429 2o0y_A Transcriptional regulat 54.8 14 0.00048 33.4 5.0 25 336-360 37-61 (260)
430 3anp_C Transcriptional repress 54.6 9.1 0.00031 32.2 3.6 25 334-358 26-50 (204)
431 2dg7_A Putative transcriptiona 54.6 7.7 0.00026 32.3 3.0 25 334-358 24-48 (195)
432 2qlz_A Transcription factor PF 54.6 25 0.00086 31.4 6.6 25 336-360 177-201 (232)
433 2i10_A Putative TETR transcrip 54.4 9.9 0.00034 32.1 3.8 25 334-358 28-52 (202)
434 1stz_A Heat-inducible transcri 54.3 18 0.00062 34.3 5.9 42 318-360 15-61 (338)
435 2rae_A Transcriptional regulat 54.2 9.4 0.00032 32.0 3.6 24 335-358 35-58 (207)
436 3lhq_A Acrab operon repressor 54.1 9.6 0.00033 31.9 3.6 24 335-358 32-55 (220)
437 1pb6_A Hypothetical transcript 54.1 9.3 0.00032 32.0 3.5 24 335-358 36-59 (212)
438 3f0c_A TETR-molecule A, transc 54.0 9.8 0.00034 32.0 3.7 25 334-358 28-52 (216)
439 3gzi_A Transcriptional regulat 53.7 8.6 0.00029 32.5 3.2 25 334-358 34-58 (218)
440 2yve_A Transcriptional regulat 53.6 10 0.00035 31.5 3.7 25 334-358 21-45 (185)
441 3kcc_A Catabolite gene activat 53.5 61 0.0021 28.5 9.1 27 337-367 217-243 (260)
442 1du6_A PBX1, homeobox protein 53.3 6.2 0.00021 27.6 1.9 50 318-367 10-63 (64)
443 3kkc_A TETR family transcripti 53.2 6 0.00021 32.3 2.1 25 334-358 29-53 (177)
444 3bru_A Regulatory protein, TET 53.1 10 0.00034 32.1 3.6 25 334-358 47-71 (222)
445 2f07_A YVDT; helix-turn-helix, 53.1 10 0.00034 31.9 3.6 25 334-358 27-51 (197)
446 1p4x_A Staphylococcal accessor 53.1 16 0.00053 33.1 5.0 51 309-360 21-73 (250)
447 3cwr_A Transcriptional regulat 53.0 8.5 0.00029 32.0 3.1 25 335-359 35-59 (208)
448 3cjd_A Transcriptional regulat 52.9 8.3 0.00029 32.6 3.0 24 335-358 30-53 (198)
449 2gen_A Probable transcriptiona 52.8 10 0.00036 31.8 3.6 25 334-358 24-48 (197)
450 2da5_A Zinc fingers and homeob 52.8 18 0.00062 26.1 4.4 51 318-368 14-65 (75)
451 2z9m_A Response regulator YYCF 52.7 25 0.00084 27.6 5.7 50 317-367 36-90 (120)
452 2o7t_A Transcriptional regulat 52.6 8.7 0.0003 32.2 3.1 25 334-358 25-49 (199)
453 1z6r_A MLC protein; transcript 52.4 21 0.0007 34.3 6.1 39 322-363 18-56 (406)
454 3b81_A Transcriptional regulat 52.3 7.5 0.00026 32.4 2.6 23 335-357 29-51 (203)
455 3dcf_A Transcriptional regulat 52.1 11 0.00037 31.7 3.6 25 334-358 48-72 (218)
456 3c2b_A Transcriptional regulat 52.0 9.4 0.00032 32.4 3.2 26 335-360 33-58 (221)
457 1ui5_A A-factor receptor homol 51.9 11 0.00037 32.3 3.6 25 334-358 26-50 (215)
458 2ia2_A Putative transcriptiona 51.9 20 0.00068 32.5 5.6 25 336-360 35-59 (265)
459 2l9r_A Homeobox protein NKX-3. 51.6 13 0.00043 26.8 3.3 52 318-369 11-63 (69)
460 2np5_A Transcriptional regulat 51.5 9.2 0.00031 32.3 3.1 25 334-358 26-50 (203)
461 3nar_A ZHX1, zinc fingers and 51.3 31 0.0011 26.1 5.8 52 317-368 31-83 (96)
462 3r4k_A Transcriptional regulat 51.2 15 0.0005 33.3 4.5 40 322-361 6-45 (260)
463 2zb9_A Putative transcriptiona 51.2 9.4 0.00032 32.3 3.1 24 335-358 41-64 (214)
464 3qbm_A TETR transcriptional re 51.1 8.1 0.00028 32.0 2.6 23 335-357 25-47 (199)
465 1hw1_A FADR, fatty acid metabo 51.0 12 0.00042 32.9 3.9 23 336-358 29-52 (239)
466 2k9s_A Arabinose operon regula 50.8 38 0.0013 25.6 6.4 26 336-361 19-44 (107)
467 2fjr_A Repressor protein CI; g 50.8 11 0.00036 32.0 3.3 22 339-360 22-43 (189)
468 2dg8_A Putative TETR-family tr 50.7 8 0.00027 32.3 2.5 24 335-358 27-50 (193)
469 3bni_A Putative TETR-family tr 50.6 11 0.00039 32.4 3.6 25 334-358 60-84 (229)
470 3rh2_A Hypothetical TETR-like 50.6 9.7 0.00033 32.2 3.1 25 334-358 20-44 (212)
471 3t8r_A Staphylococcus aureus C 50.5 23 0.00079 28.9 5.3 43 317-359 5-50 (143)
472 3col_A Putative transcription 50.5 6.7 0.00023 32.3 2.0 24 335-358 28-51 (196)
473 2xdn_A HTH-type transcriptiona 50.4 8.3 0.00028 32.6 2.6 25 334-358 28-52 (210)
474 1rkt_A Protein YFIR; transcrip 50.2 8.3 0.00028 32.5 2.6 24 334-357 29-52 (205)
475 2hyt_A TETR-family transcripti 50.1 8.9 0.00031 32.1 2.8 24 335-358 30-53 (197)
476 2oer_A Probable transcriptiona 50.0 11 0.00037 32.1 3.3 25 334-358 41-65 (214)
477 3crj_A Transcription regulator 49.9 8.3 0.00028 32.5 2.5 25 334-358 31-55 (199)
478 1vi0_A Transcriptional regulat 49.8 9.9 0.00034 32.2 3.0 25 334-358 25-49 (206)
479 3s5r_A Transcriptional regulat 49.7 10 0.00035 31.9 3.1 24 335-358 28-51 (216)
480 2oa4_A SIR5; structure, struct 49.7 7.7 0.00026 30.3 2.0 28 336-363 49-76 (101)
481 3cta_A Riboflavin kinase; stru 49.3 10 0.00035 33.5 3.1 26 336-361 26-51 (230)
482 3a01_A Homeodomain-containing 48.9 44 0.0015 25.1 6.3 53 318-370 24-77 (93)
483 3g7r_A Putative transcriptiona 48.9 13 0.00044 31.8 3.7 25 334-358 52-76 (221)
484 1xmk_A Double-stranded RNA-spe 48.9 32 0.0011 25.4 5.3 23 245-267 26-49 (79)
485 2hku_A A putative transcriptio 48.7 13 0.00046 31.4 3.7 25 334-359 37-61 (215)
486 3bjb_A Probable transcriptiona 48.7 11 0.00037 32.1 3.1 26 334-359 39-64 (207)
487 1bja_A Transcription regulator 48.5 26 0.00087 27.0 4.8 39 317-358 13-52 (95)
488 3k2z_A LEXA repressor; winged 48.5 39 0.0013 28.9 6.7 40 228-267 8-47 (196)
489 3hot_A Transposable element ma 48.4 15 0.00052 34.1 4.3 36 322-361 11-53 (345)
490 2k9s_A Arabinose operon regula 47.9 34 0.0012 25.9 5.7 38 230-267 5-43 (107)
491 3u1d_A Uncharacterized protein 47.8 32 0.0011 28.7 5.7 24 337-360 45-69 (151)
492 3he0_A Transcriptional regulat 47.8 9.6 0.00033 31.5 2.5 23 335-357 29-51 (196)
493 3cdl_A Transcriptional regulat 47.7 9.4 0.00032 32.2 2.5 25 334-358 26-50 (203)
494 3mvp_A TETR/ACRR transcription 47.7 11 0.00039 31.5 3.0 24 335-358 44-67 (217)
495 3mq0_A Transcriptional repress 47.5 11 0.00037 34.5 3.1 25 336-360 44-68 (275)
496 1b4a_A Arginine repressor; hel 47.4 36 0.0012 28.3 6.0 38 320-360 5-47 (149)
497 2hqn_A Putative transcriptiona 47.3 6.2 0.00021 30.5 1.2 50 317-367 29-83 (109)
498 2fe3_A Peroxide operon regulat 47.2 53 0.0018 26.6 7.1 41 317-359 19-64 (145)
499 3v6g_A Probable transcriptiona 47.0 14 0.00048 31.6 3.6 25 334-358 31-55 (208)
500 3oio_A Transcriptional regulat 47.0 38 0.0013 25.9 5.8 56 156-211 14-69 (113)
No 1
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=8e-42 Score=343.14 Aligned_cols=251 Identities=36% Similarity=0.558 Sum_probs=230.0
Q ss_pred cHHHHHHHHhcccHHHHHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHH
Q 046578 127 DYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAI 206 (379)
Q Consensus 127 ~~~eLi~~~~~Gd~~A~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i 206 (379)
+..+|+.+++. |..|++.||..|.++|+++|++|.+++.+++||+||||+|||+++++|||.+|++|+||++|||++.|
T Consensus 169 ~~~~L~~~~~~-d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~FstYa~~wIr~~i 247 (423)
T 2a6h_F 169 EHKRYLHIARE-GEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAI 247 (423)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence 34677777775 59999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccCCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC--CCHHHHHHHHHhcCCccccCCccccCCCC
Q 046578 207 IRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN--IHVSTVRLAIERTRHPISLDGAVTDRGCM 284 (379)
Q Consensus 207 ~~~lr~~~r~irip~~~~~~~~ki~~a~~~l~~~lgr~pt~~eia~~Lg--is~~~~~~~l~~~~~~iSLd~~~~~~~~~ 284 (379)
.++++++.+.+++|.|+...++++.++.+.+.+.+|+.|+.++||+.+| ++++++..++......+|++.+++++++.
T Consensus 248 ~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~Sld~~~~~~~~~ 327 (423)
T 2a6h_F 248 NRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDS 327 (423)
T ss_dssp HHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCEESSCBCSSSSSC
T ss_pred HHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCcccccccCCCCcc
Confidence 9999999999999999999999999999999999999999999999999 99999999998888999999998777666
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046578 285 TMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364 (379)
Q Consensus 285 ~l~d~i~~~~~~~pe~~~~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~k 364 (379)
.+.+.+++....+|++.+...+....|..+|..||++||.||.++|||+|++++|++|||+.||||+++|+++++||++|
T Consensus 328 ~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~k 407 (423)
T 2a6h_F 328 FYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRK 407 (423)
T ss_dssp BGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHH
T ss_pred chhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 78888887666788988888888889999999999999999999999988789999999999999999999999999999
Q ss_pred HH-hHHhhchhhhhc
Q 046578 365 LQ-QTNILNNLKVYM 378 (379)
Q Consensus 365 LR-~~l~~~~L~~y~ 378 (379)
|| ..+....|++|+
T Consensus 408 LR~~~~~~~~l~~~l 422 (423)
T 2a6h_F 408 LKYHESRTRKLRDFL 422 (423)
T ss_dssp HHHHHHHTTSSSSCC
T ss_pred HHhhhhhhHHHHHhh
Confidence 99 888888899987
No 2
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=9.8e-42 Score=341.67 Aligned_cols=251 Identities=35% Similarity=0.566 Sum_probs=232.5
Q ss_pred cHHHHHHHHhcccHHHHHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHH
Q 046578 127 DYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAI 206 (379)
Q Consensus 127 ~~~eLi~~~~~Gd~~A~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i 206 (379)
+..+|+..+ .||..|++.||..|.++|+++|++|.+++.+++||+||||+|||+++++||+++|++|+||++|||++.|
T Consensus 184 ~~~eLi~~~-~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsTYA~~wIR~~I 262 (438)
T 1l9z_H 184 ELKRYLHIA-REGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAI 262 (438)
T ss_pred hHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHHHHHHHHHHHH
Confidence 346667666 4679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcccCCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC--CCHHHHHHHHHhcCCccccCCccccCCCC
Q 046578 207 IRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN--IHVSTVRLAIERTRHPISLDGAVTDRGCM 284 (379)
Q Consensus 207 ~~~lr~~~r~irip~~~~~~~~ki~~a~~~l~~~lgr~pt~~eia~~Lg--is~~~~~~~l~~~~~~iSLd~~~~~~~~~ 284 (379)
.++++++.+.+++|.|+...++++.++.+.+.+.+|+.|+.++||+.+| ++.+++..++......+|+|.+++++++.
T Consensus 263 ~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~SLd~~~~~d~d~ 342 (438)
T 1l9z_H 263 NRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDS 342 (438)
T ss_pred HHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhcccccccccccccccch
Confidence 9999999999999999999999999999999999999999999999999 99999999988888899999988776665
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046578 285 TMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364 (379)
Q Consensus 285 ~l~d~i~~~~~~~pe~~~~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~k 364 (379)
.+.+.+++....+|++.+...+....|..+|+.||++||.||.++|||+|++++|++|||+.||||+++|+++++||++|
T Consensus 343 ~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkK 422 (438)
T 1l9z_H 343 FYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRK 422 (438)
T ss_pred hhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 67777776655678888888888889999999999999999999999887789999999999999999999999999999
Q ss_pred HH-hHHhhchhhhhc
Q 046578 365 LQ-QTNILNNLKVYM 378 (379)
Q Consensus 365 LR-~~l~~~~L~~y~ 378 (379)
|| ..+....|++|+
T Consensus 423 LR~~~~~~~~l~~yl 437 (438)
T 1l9z_H 423 LKYHESRTRKLRDFL 437 (438)
T ss_pred HHHhHhhHHHHHHhh
Confidence 99 888888899997
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=3.5e-43 Score=368.38 Aligned_cols=331 Identities=27% Similarity=0.403 Sum_probs=282.3
Q ss_pred hhhhhhhhhhhhhhhhhHHHhhHHH---HHHH---HHhhh-hhcCCcccccchhHHHHHHHHHHHHHhhhcccccccchh
Q 046578 48 VTNEALALHPVIESATDAAALASAA---VRTA---KDAVS-FANGAEEVCFDDGECESVLKMMRRRSRRKKRTKESDFLD 120 (379)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (379)
+......|+++.+.-...|.--.+. |... -..++ ...|+|+-+|...+.+.+.+..|..+..+..+++.....
T Consensus 252 l~~~~~~lkL~~k~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~mpr~~Fi~~f~g~e~~~~w~~~~~~~~~~~~~~l~ 331 (613)
T 3iyd_F 252 LSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLH 331 (613)
T ss_dssp HHHHHTTSCBCHHHHHHHTHHHHTTTHHHHHHHHHHHHTTTTTTTCCGGGTTTTTTTCCSSTTTTHHHHTTCCTTGGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcccccCCHHHHHHHHHhhccHHHHHH
Confidence 4445555666555544333332222 2222 22333 447999999999999998888886665555555543321
Q ss_pred h-------------------hcCcCcHHHHHHHHhcccHHH---HHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 046578 121 K-------------------ENGELDYNLVKYKILCKERES---QERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIG 178 (379)
Q Consensus 121 ~-------------------~~~~~~~~eLi~~~~~Gd~~A---~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~ 178 (379)
. .....+..+|+.++++||..| ++.||+.|.++|+++|++|.+++.+++||+||||++
T Consensus 332 ~~~~~I~~~q~kL~~ie~~~~~~~~~~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~ 411 (613)
T 3iyd_F 332 DVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG 411 (613)
T ss_dssp GTHHHHHHHHHHHHHHHHHHTSCTTTHHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 1 111224678999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHhhcCcccCCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCH
Q 046578 179 LLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHV 258 (379)
Q Consensus 179 L~~ai~~fD~~~g~~FsTYa~~~Ir~~i~~~lr~~~r~irip~~~~~~~~ki~~a~~~l~~~lgr~pt~~eia~~Lgis~ 258 (379)
||+++++|++.+|.+|+||+++|++|.+.++++++.+.+++|.|+...++++.++...+.+.+|++|+++|||+.+|++.
T Consensus 412 l~~a~~~fd~~~g~~Fstyl~~~irn~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~ 491 (613)
T 3iyd_F 412 LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPE 491 (613)
T ss_dssp HHHHTTSCCTTSSSCSTTTHHHHHHHHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCS
T ss_pred HHHHHHHcCccccCcHHHHHHHHHHHHHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccccCCccccCCCCcccccCCCCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC
Q 046578 259 STVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPV 338 (379)
Q Consensus 259 ~~~~~~l~~~~~~iSLd~~~~~~~~~~l~d~i~~~~~~~pe~~~~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~ 338 (379)
++++.++.....++|++.+++++++..+.+++.+....+|++.+...++...|..+|..||+++|.||.|+||+++.+++
T Consensus 492 ~~v~~~~~~~~~~~sld~~~~~~~~~~l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~Vl~Lr~~~~~~e~~ 571 (613)
T 3iyd_F 492 DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDH 571 (613)
T ss_dssp SHHHHHHHHSCCCCCSSCCCSSSSSCCGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHHHHHHHHTSSSCCCC
T ss_pred HHHHHHHHhccCCcccCCCCCCCCCccHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCc
Confidence 99999999999999999999877777788888887777899988888888889999999999999999999988766899
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhchhhhhc
Q 046578 339 SCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378 (379)
Q Consensus 339 S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~~L~~y~ 378 (379)
|++|||+.||||++||+++++||+++||+++....|+.|+
T Consensus 572 s~~EIA~~lgis~~tVk~~~~rAl~kLR~~~~~~~l~~~l 611 (613)
T 3iyd_F 572 TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 611 (613)
T ss_dssp STTGGGTTTSSCSSHHHHHHHHHHTTTTSCSSSCSSTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhhCcchhhHHHHHh
Confidence 9999999999999999999999999999999999998886
No 4
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=100.00 E-value=3.3e-32 Score=250.49 Aligned_cols=223 Identities=26% Similarity=0.352 Sum_probs=190.6
Q ss_pred cHHHHHHHHHHhHHHHHHHHHhcc---CCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHhhcC
Q 046578 139 ERESQERIIRSYRSLVVSIATGYQ---GKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSR 215 (379)
Q Consensus 139 d~~A~e~Li~~y~~lV~~ia~r~~---~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i~~~lr~~~r 215 (379)
+..|++.||..|.++|+++|+++. ++..++||++||||+++|+++++|++.+|.+|.||++++++|.+.+++|++.
T Consensus 10 ~~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~- 88 (239)
T 1rp3_A 10 NQIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS-
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-
Confidence 445899999999999999999998 6789999999999999999999999998889999999999999999999865
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhc--CCccccCCccccCCCCcccccCCCC
Q 046578 216 TIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERT--RHPISLDGAVTDRGCMTMQDIIPGP 293 (379)
Q Consensus 216 ~irip~~~~~~~~ki~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~~--~~~iSLd~~~~~~~~~~l~d~i~~~ 293 (379)
+.|........++.++...+...+|+.|+.+++++.+|++.+.+..++... ....+++.+..++++.. .+. ++.
T Consensus 89 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~-~~~-~~~ 164 (239)
T 1rp3_A 89 --FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDY-SEL-IPS 164 (239)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-GGG
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCccc-ccc-cCC
Confidence 577788888999999999999999999999999999999999998776542 23445655433222111 222 222
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhh
Q 046578 294 DETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371 (379)
Q Consensus 294 ~~~~pe~~~~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~ 371 (379)
..+|++.+...+....|..+|..||+++|.||.++|+ +|+|++|||+.||+|.++|+++++||+++||+.+..
T Consensus 165 -~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~~ 237 (239)
T 1rp3_A 165 -STNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFY----EELPAKEVAKILETSVSRVSQLKAKALERLREMLSN 237 (239)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT----SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3467777888888889999999999999999999994 779999999999999999999999999999998753
No 5
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.97 E-value=1.2e-32 Score=253.43 Aligned_cols=229 Identities=28% Similarity=0.370 Sum_probs=52.3
Q ss_pred CcHHHHHHHHhcccHHHHHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHH
Q 046578 126 LDYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQA 205 (379)
Q Consensus 126 ~~~~eLi~~~~~Gd~~A~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~ 205 (379)
.+..+|+.++++||..|++.||..|.++|+++|+++.++..++||++||||+++|+++++|++.+|.+|.||++++++|.
T Consensus 13 ~~~~~l~~~~~~gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~ 92 (243)
T 1l0o_C 13 QEMKELIRRSQEGDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGE 92 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHH
Confidence 44578999999999999999999999999999999999989999999999999999999999988889999999999999
Q ss_pred HHHHHHhhcCcccCCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCccccCCC--
Q 046578 206 IIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGC-- 283 (379)
Q Consensus 206 i~~~lr~~~r~irip~~~~~~~~ki~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~~~~~iSLd~~~~~~~~-- 283 (379)
+.+++|++. .+++|++......++.++...+....|+.|+.+++++.+|++.+.+...+.......|++.+..++++
T Consensus 93 ~~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 171 (243)
T 1l0o_C 93 IQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDP 171 (243)
T ss_dssp -------CC-CCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC---------------
T ss_pred HHHHHHhcC-CccCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCcc
Confidence 999999987 78999999999999999999999999999999999999999999988887766567778776543221
Q ss_pred CcccccCCCCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046578 284 MTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363 (379)
Q Consensus 284 ~~l~d~i~~~~~~~pe~~~~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~ 363 (379)
.++.+.+ |++.+...+....|..+|..||+++|.||.++|+ +|+|++|||+.||+|.++|+++++||++
T Consensus 172 ~~~~~~~-------~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 172 ITLLDQI-------ADADEASWFDKIALKKAIEELDERERLIVYLRYY----KDQTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhcc-------CcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHh----cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1222222 2223334455567899999999999999999984 7799999999999999999999999999
Q ss_pred HHH
Q 046578 364 KLQ 366 (379)
Q Consensus 364 kLR 366 (379)
+||
T Consensus 241 ~Lr 243 (243)
T 1l0o_C 241 HIK 243 (243)
T ss_dssp ---
T ss_pred HcC
Confidence 997
No 6
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.94 E-value=3.7e-27 Score=209.06 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=149.7
Q ss_pred CcCcHHHHHHH-HhcccHHHHHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHH
Q 046578 124 GELDYNLVKYK-ILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWI 202 (379)
Q Consensus 124 ~~~~~~eLi~~-~~~Gd~~A~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~I 202 (379)
+..+..+|+.+ +++||..|++.||..|.+.|+++++++.++..++||++||+|+++|+++++|++..| +|.+|++.++
T Consensus 9 ~~~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~ 87 (184)
T 2q1z_A 9 DRTDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIA 87 (184)
T ss_dssp CTTCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHH
T ss_pred cCccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHH
Confidence 34667899999 999999999999999999999999999999899999999999999999999998765 8999999999
Q ss_pred HHHHHHHHHhhcCcccCCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCccccCC
Q 046578 203 KQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRG 282 (379)
Q Consensus 203 r~~i~~~lr~~~r~irip~~~~~~~~ki~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~~~~~iSLd~~~~~~~ 282 (379)
+|.+.+++|+..+.. .++. +
T Consensus 88 ~n~~~d~~R~~~~~~-------------------------------------------------------~~~~----~- 107 (184)
T 2q1z_A 88 RNRRIDGLRKDRQPE-------------------------------------------------------PEDL----F- 107 (184)
T ss_dssp HTSCCTTTCSSSCCC-------------------------------------------------------CCCC----C-
T ss_pred HHHHHHHHHhhcccc-------------------------------------------------------cccc----c-
Confidence 999999998765310 0110 0
Q ss_pred CCcccccCCCCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 283 CMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 283 ~~~l~d~i~~~~~~~pe~~~~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
. .. ....+|++.+...+....+..+|..||+++|+||.++|+ +|+|++|||+.||+|.++|+++++||+
T Consensus 108 ---~---~~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra~ 176 (184)
T 2q1z_A 108 ---W---GP-DSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFF----GDLTHRELAAETGLPLGTIKSRIRLAL 176 (184)
T ss_dssp ---C---CS-SCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----SCCSSCCSTTTCCCCCHHHHHHHHHHH
T ss_pred ---c---cC-CCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 0 01 123467777777777888999999999999999999985 779999999999999999999999999
Q ss_pred HHHHhHH
Q 046578 363 TKLQQTN 369 (379)
Q Consensus 363 ~kLR~~l 369 (379)
++||+.+
T Consensus 177 ~~Lr~~l 183 (184)
T 2q1z_A 177 DRLRQHM 183 (184)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9999875
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.94 E-value=8.2e-27 Score=208.33 Aligned_cols=181 Identities=13% Similarity=0.176 Sum_probs=140.7
Q ss_pred cHHHHHHHHhcccHHHHHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHH
Q 046578 127 DYNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAI 206 (379)
Q Consensus 127 ~~~eLi~~~~~Gd~~A~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i 206 (379)
+..+|+.++++||..|++.||..|.+.|+++|+++.+ ..++||++||+|+++|+++++|++.. .|.+|++.+++|.+
T Consensus 9 ~~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~ 85 (194)
T 1or7_A 9 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTA 85 (194)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999 89999999999999999999999764 69999999999999
Q ss_pred HHHHHhhcCcccCCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCccccCCCCcc
Q 046578 207 IRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTM 286 (379)
Q Consensus 207 ~~~lr~~~r~irip~~~~~~~~ki~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~~~~~iSLd~~~~~~~~~~l 286 (379)
.+++|+..+..... ++.. . ....++. .
T Consensus 86 ~d~~R~~~~~~~~~----------------------------~~~~-----------~-----~~~~~~~------~--- 112 (194)
T 1or7_A 86 KNYLVAQGRRPPSS----------------------------DVDA-----------I-----EAENFES------G--- 112 (194)
T ss_dssp HHHHHHHTTCCTHH----------------------------HHHH-----------H-----HHHSCCS------S---
T ss_pred HHHHHHHhccCccc----------------------------cccc-----------c-----ccccccc------c---
Confidence 99999876421100 0000 0 0000000 0
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 046578 287 QDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366 (379)
Q Consensus 287 ~d~i~~~~~~~pe~~~~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR 366 (379)
+.+++ ..+|++.+...+....+..++..||+++|.||.++|+ +|+|++|||+.||+|.++|+++++||+++||
T Consensus 113 -~~~~~--~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 113 -GALKE--ISNPENLMLSEELRQIVFRTIESLPEDLRMAITLREL----DGLSYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp -CC----------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHT----TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred -ccccC--CCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 00001 0123333333455567889999999999999999984 7799999999999999999999999999999
Q ss_pred hHHh
Q 046578 367 QTNI 370 (379)
Q Consensus 367 ~~l~ 370 (379)
+.+.
T Consensus 186 ~~l~ 189 (194)
T 1or7_A 186 NKVQ 189 (194)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9874
No 8
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=99.90 E-value=2.6e-24 Score=201.02 Aligned_cols=144 Identities=40% Similarity=0.657 Sum_probs=80.7
Q ss_pred HHHHHhcccHHHHHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHH
Q 046578 131 VKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAI 210 (379)
Q Consensus 131 Li~~~~~Gd~~A~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i~~~l 210 (379)
.+.++.+||..|++.||+.|.++|+++|++|.+++.+++||+||||+++|+++++||+++|.+|+||++||+++.+.+++
T Consensus 100 ~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~tya~~~ir~~i~~~i 179 (245)
T 3ugo_A 100 RYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAI 179 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 34556678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC--CCHHHHHHHHHhcCCcccc
Q 046578 211 ANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLN--IHVSTVRLAIERTRHPISL 274 (379)
Q Consensus 211 r~~~r~irip~~~~~~~~ki~~a~~~l~~~lgr~pt~~eia~~Lg--is~~~~~~~l~~~~~~iSL 274 (379)
+++.+.+++|.++...++++.++.+.+...+|+.|+.+|||+.|| ++.+++...+......+||
T Consensus 180 r~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~lsl 245 (245)
T 3ugo_A 180 ADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSL 245 (245)
T ss_dssp HHHTC-------------------------------------------------------------
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999 9999999998887777664
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.89 E-value=6.6e-23 Score=177.24 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=107.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHhhcCcccCCcchHHHHHHHHHHHHHHHHHhCCC
Q 046578 165 GLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRM 244 (379)
Q Consensus 165 ~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i~~~lr~~~r~irip~~~~~~~~ki~~a~~~l~~~lgr~ 244 (379)
|.++||++||+|+++|+++.+|++.+ .+|.||++++++|.+.+++|+..+..+.+..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~---------------------- 57 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLN---------------------- 57 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhH----------------------
Confidence 46899999999999999999999887 6899999999999999999987532222100
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCccccCCccccCCCCccc----ccCCCCCCCChHHHHHHHHHHHHHHHHHh-cCC
Q 046578 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQ----DIIPGPDETMPERMVQKQLMKQELKELLQ-TLS 319 (379)
Q Consensus 245 pt~~eia~~Lgis~~~~~~~l~~~~~~iSLd~~~~~~~~~~l~----d~i~~~~~~~pe~~~~~~e~~~~L~~~L~-~L~ 319 (379)
..++.+.+..++....+. +.+. ....+|++.+...+....+..+|. .||
T Consensus 58 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~~l~~~L~ 111 (164)
T 3mzy_A 58 -------------------------EALKTNAILEDSAYFDDEGHNINNYK-SSESNPEEAYLLKEEIEEFKKFSENNFS 111 (164)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------------------------HHhhhhhhhccCCCCCcccchhhhhc-ccCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence 111122111111111111 1111 223456777777788888999999 999
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhch
Q 046578 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373 (379)
Q Consensus 320 ~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~~ 373 (379)
+++|.||. +|+ +|+|++|||+.||+|.++|+++++||+++||+.+...+
T Consensus 112 ~~~r~v~~-~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~ 160 (164)
T 3mzy_A 112 KFEKEVLT-YLI----RGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE 160 (164)
T ss_dssp HHHHHHHH-HHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999 563 67999999999999999999999999999999987654
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.82 E-value=1.2e-22 Score=176.87 Aligned_cols=143 Identities=9% Similarity=0.075 Sum_probs=119.3
Q ss_pred HHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHhhcCcccCCcc
Q 046578 143 QERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGS 222 (379)
Q Consensus 143 ~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i~~~lr~~~r~irip~~ 222 (379)
|+.||..|.+.|+.+|.++.++..++||++||+|+++|+++++|++.. .|.+|++.+++|.+.+++|+...
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~------- 73 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEA------- 73 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCc-------
Confidence 577999999999999999999989999999999999999999998753 79999999999999999886320
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCccccCCCCcccccCCCCCCCChHHHH
Q 046578 223 MAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMV 302 (379)
Q Consensus 223 ~~~~~~ki~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~~~~~iSLd~~~~~~~~~~l~d~i~~~~~~~pe~~~ 302 (379)
. +. . . + . .
T Consensus 74 -----------------------------------------------~----~~------~--~-e---~-~-------- 81 (157)
T 2lfw_A 74 -----------------------------------------------Q----TS------Q--S-D---A-E-------- 81 (157)
T ss_dssp -----------------------------------------------C----CC------C--C-S---C-S--------
T ss_pred -----------------------------------------------c----cC------C--c-c---h-H--------
Confidence 0 00 0 0 0 0 0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhch
Q 046578 303 QKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373 (379)
Q Consensus 303 ~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~~ 373 (379)
+....+..+|..||+++|+||.|+|+ +|+|++|||+.||+|.++|+++++||+++||+.+....
T Consensus 82 ---~~~~~l~~~l~~Lp~~~r~vl~L~~~----~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~ 145 (157)
T 2lfw_A 82 ---GTEAVARARLARMTPLSRQALLLTAM----EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALE 145 (157)
T ss_dssp ---SSSSTTTTTTTTSCTTHHHHHTTTSS----SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00123667889999999999999984 77999999999999999999999999999999986543
No 11
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.75 E-value=4.3e-19 Score=169.20 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=119.5
Q ss_pred hcccHHHHHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHhhcC
Q 046578 136 LCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSR 215 (379)
Q Consensus 136 ~~Gd~~A~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i~~~lr~~~r 215 (379)
.+||..+|++||..|.+.++.+|.+++++..++||++||+|+.+|+...+|++. .+|.+|++++++|.+++++|+...
T Consensus 16 ~~g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~~ 93 (286)
T 3n0r_A 16 PRGSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLEV 93 (286)
T ss_dssp ----CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC----
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhcccccc
Confidence 457888999999999999999999999999999999999999999999999864 379999999999999988774210
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCccccCCCCcccccCCCCCC
Q 046578 216 TIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDE 295 (379)
Q Consensus 216 ~irip~~~~~~~~ki~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~~~~~iSLd~~~~~~~~~~l~d~i~~~~~ 295 (379)
. .. .....
T Consensus 94 -------------------------------------------------------~--------~~---------~~~~~ 101 (286)
T 3n0r_A 94 -------------------------------------------------------G--------HD---------QGLHA 101 (286)
T ss_dssp -------------------------------------------------------C--------CC---------CCCCT
T ss_pred -------------------------------------------------------C--------CC---------cccch
Confidence 0 00 00000
Q ss_pred CChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 296 TMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 296 ~~pe~~~~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
...+..+|++||+++|+||.|+|+ +|+|++|||+.+|+|.++|+..+.+|+++|+..+.
T Consensus 102 ------------~~~l~~al~~Lp~~~R~v~~L~~~----eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 102 ------------GDDAAQRLMRIAPRSRQAFLLTAL----EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp ------------TSHHHHHHHHHSCHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred ------------HHHHHHHHHhCCHHHeeEEEEEee----CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 023778999999999999999994 77999999999999999999999999999998754
No 12
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.73 E-value=4.5e-18 Score=165.93 Aligned_cols=133 Identities=30% Similarity=0.450 Sum_probs=109.9
Q ss_pred hhcCCcccccchhHHHHHHHHHHHHHhhhcccccccchhh---------------h-cCcC---cHHHHHHHHhcccH--
Q 046578 82 FANGAEEVCFDDGECESVLKMMRRRSRRKKRTKESDFLDK---------------E-NGEL---DYNLVKYKILCKER-- 140 (379)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~---~~~eLi~~~~~Gd~-- 140 (379)
...|+|+-+|...+.+.+.+..|-.+..+..+++...... . ...+ +..+|+.+++.||.
T Consensus 184 ~~~~mpr~~fi~~f~g~e~~~~w~~~~~~~~~~~~~~l~~~~~~i~~~q~kl~~ie~~~~l~~~~~~~l~~~~~~gd~~~ 263 (339)
T 1sig_A 184 EQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKA 263 (339)
T ss_dssp TTSCCCHHHHHHHHTTTCSSGGGTHHHHTTCSHHHHHGGGTHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHcccccCcHHHHHHHhhccchHHHHHHHhHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhccccc
Confidence 5579999999999888888777765555544433321110 0 1112 24678999999999
Q ss_pred -HHHHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHhhc
Q 046578 141 -ESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKS 214 (379)
Q Consensus 141 -~A~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i~~~lr~~~ 214 (379)
.|++.||..|.++|+++|++|.+++.+++||+||||++||+++++|++.+|.+|+||+++|++|.|.+++|++.
T Consensus 264 ~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~~~~~lr~~~ 338 (339)
T 1sig_A 264 RRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 338 (339)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999864
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.56 E-value=1.6e-14 Score=115.93 Aligned_cols=77 Identities=32% Similarity=0.532 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhchhhhhc
Q 046578 302 VQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378 (379)
Q Consensus 302 ~~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~~L~~y~ 378 (379)
+...+....|..+++.|||+||.||.++||++|.+++|++|||+.||+|+++|++++++|+++||+.+....|++|+
T Consensus 4 ~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~ 80 (99)
T 3t72_q 4 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGS 80 (99)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778899999999999999999999888778999999999999999999999999999999999999999986
No 14
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.42 E-value=3.5e-13 Score=109.85 Aligned_cols=85 Identities=14% Similarity=0.105 Sum_probs=76.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHH
Q 046578 128 YNLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAII 207 (379)
Q Consensus 128 ~~eLi~~~~~Gd~~A~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i~ 207 (379)
..+|+.+++.||+.+++.||..|.+.++++|.++ ++..++||++||+|+.+|+.+.+|++. .+|.+|++.+++|.++
T Consensus 11 ~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~ 87 (112)
T 2o7g_A 11 VTALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVA 87 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999 888899999999999999999999864 3799999999999999
Q ss_pred HHHHhhcC
Q 046578 208 RAIANKSR 215 (379)
Q Consensus 208 ~~lr~~~r 215 (379)
+++|++.+
T Consensus 88 d~~R~~~~ 95 (112)
T 2o7g_A 88 DHIRHVRS 95 (112)
T ss_dssp HHTC----
T ss_pred HHHHHhhc
Confidence 99998664
No 15
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.40 E-value=2e-12 Score=102.04 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=69.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhch
Q 046578 294 DETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNN 373 (379)
Q Consensus 294 ~~~~pe~~~~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~~ 373 (379)
...+|++.+...+....|..+|..||+++|+||.++|+ +|+|++|||+.||+|.++|+++++||+++||+.+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 14 PEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYY----RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34578888999999999999999999999999999984 77999999999999999999999999999999987654
No 16
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.37 E-value=1.1e-12 Score=102.62 Aligned_cols=69 Identities=42% Similarity=0.637 Sum_probs=63.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhchhhhhc
Q 046578 310 ELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378 (379)
Q Consensus 310 ~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~~L~~y~ 378 (379)
.|..+|+.||+++|.||.++|+++|.+++|++|||+.||+|+++|+++++||+++||+.+....++.|+
T Consensus 11 ~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~ 79 (87)
T 1tty_A 11 ELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLL 79 (87)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 477899999999999999999877668899999999999999999999999999999999887777664
No 17
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.36 E-value=5.7e-13 Score=99.22 Aligned_cols=65 Identities=38% Similarity=0.661 Sum_probs=60.5
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhchhhhhc
Q 046578 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNLKVYM 378 (379)
Q Consensus 314 ~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~~L~~y~ 378 (379)
+++.||++|++||.++||++|.+++|++|||+.||+|+++|++++++|+++||..+....++.|+
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~ 66 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFL 66 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTT
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999887678899999999999999999999999999999999999888875
No 18
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=99.34 E-value=5.9e-13 Score=103.51 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=71.2
Q ss_pred HHHhcccHHHHHHHHHHhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHh
Q 046578 133 YKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIAN 212 (379)
Q Consensus 133 ~~~~~Gd~~A~e~Li~~y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i~~~lr~ 212 (379)
.++..||..++++||..|.+.++.++.++.++..++||++||+|+.+|+.++.|++. .+|.+|++.+++|.+++++|+
T Consensus 4 ~~~~~g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~ 81 (87)
T 1h3l_A 4 AESTAERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRK 81 (87)
T ss_dssp --CHHHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC-
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999998999999999999999999999864 379999999999999999987
Q ss_pred hc
Q 046578 213 KS 214 (379)
Q Consensus 213 ~~ 214 (379)
+.
T Consensus 82 ~~ 83 (87)
T 1h3l_A 82 KQ 83 (87)
T ss_dssp --
T ss_pred hc
Confidence 54
No 19
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.34 E-value=5.3e-13 Score=100.80 Aligned_cols=68 Identities=37% Similarity=0.554 Sum_probs=54.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-hHHhhchhhhhc
Q 046578 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ-QTNILNNLKVYM 378 (379)
Q Consensus 311 L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR-~~l~~~~L~~y~ 378 (379)
+..+++.||++|++||.++|+++|.+++|++|||+.||+|.++|++++++|+++|| +.+....+++|+
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 72 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 72 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhh
Confidence 45678899999999999999877668899999999999999999999999999999 888888888875
No 20
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.15 E-value=1.5e-14 Score=135.54 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=120.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHhHHHHHHHHHhccCCCCCHHHHH----HHHHHHHHHHHhccCCCCCCCchhHHHHHHHH
Q 046578 129 NLVKYKILCKERESQERIIRSYRSLVVSIATGYQGKGLSLKDLI----QEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQ 204 (379)
Q Consensus 129 ~eLi~~~~~Gd~~A~e~Li~~y~~lV~~ia~r~~~~~~d~eDLv----QEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~ 204 (379)
..++.++..+|..+++.+...|.++++.+...........+|+. ||+|+.+|+.+..|++.. +|.+|++.+++|
T Consensus 85 ~~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n 162 (258)
T 3clo_A 85 DCIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYS 162 (258)
T ss_dssp HHHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEE
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHH
Confidence 46888887888999999999999999999888766667788886 999999999999997643 799999999888
Q ss_pred HHHHHHHhhcCcccCCcchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCccccCCCC
Q 046578 205 AIIRAIANKSRTIRLPGSMAGMVAKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCM 284 (379)
Q Consensus 205 ~i~~~lr~~~r~irip~~~~~~~~ki~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~~~~~iSLd~~~~~~~~~ 284 (379)
.+.++.++.. +...+.....
T Consensus 163 ~~~d~~r~~~-----------------------------------------------------------~~~~~~~~~~- 182 (258)
T 3clo_A 163 LSADQRPEQG-----------------------------------------------------------IYATITQMER- 182 (258)
T ss_dssp ECSCCCCCSS-----------------------------------------------------------CCCEEEETTT-
T ss_pred HHcchhhhhH-----------------------------------------------------------HHHHHHhhcc-
Confidence 7766533211 0000000000
Q ss_pred cccccCCCCCCCChHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046578 285 TMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364 (379)
Q Consensus 285 ~l~d~i~~~~~~~pe~~~~~~e~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~k 364 (379)
.+.... . .+..++..||+++|+||.+++ +|+|++|||+.||+|.+||+.+++||+++
T Consensus 183 --~~~~~~---~-------------~~~~~~~~L~~~erevl~L~~-----~G~s~~EIA~~L~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 183 --GEVETL---S-------------LSEEHRNILSEREKEILRCIR-----KGLSSKEIAATLYISVNTVNRHRQNILEK 239 (258)
T ss_dssp --TEEEEC---C-------------CHHHHTTSSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred --cccccc---h-------------hhHHHHccCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 000000 0 134567899999999999975 77999999999999999999999999999
Q ss_pred HHhHHhhc
Q 046578 365 LQQTNILN 372 (379)
Q Consensus 365 LR~~l~~~ 372 (379)
||......
T Consensus 240 L~~~~~~~ 247 (258)
T 3clo_A 240 LSVGNSIE 247 (258)
T ss_dssp TTCSSHHH
T ss_pred HcCCCHHH
Confidence 99875443
No 21
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=99.12 E-value=1.1e-10 Score=86.51 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhchh
Q 046578 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374 (379)
Q Consensus 308 ~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~~L 374 (379)
...+..+++.||++++.||.++|+ +|+|++|||+.||+|+++|++++++|+++||+.+....+
T Consensus 6 ~~~l~~~l~~L~~~~r~il~l~~~----~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 6 LVEVTTMIADLTTDQREALLLTQL----LGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHTTTTSSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 456888999999999999999984 679999999999999999999999999999999876544
No 22
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=99.01 E-value=1.4e-09 Score=89.14 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhchh
Q 046578 302 VQKQLMKQELKELL-QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374 (379)
Q Consensus 302 ~~~~e~~~~L~~~L-~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~~L 374 (379)
++..+....+..++ ..||+++|.||.++|+ +|+|++|||+.||+|.++|+++++||+++||+.+....+
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 78 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFYL----EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLEL 78 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHT----SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445556788899 9999999999999984 779999999999999999999999999999999876544
No 23
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.89 E-value=6.2e-09 Score=85.30 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=56.0
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhchh
Q 046578 309 QELKELL-QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374 (379)
Q Consensus 309 ~~L~~~L-~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~~L 374 (379)
..+..++ ..|||+++.|+.++|+ +|+|++|||+.||+|++||+++++||+++||+.+...++
T Consensus 13 ~~l~~~l~~~L~~~~r~vl~l~y~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 75 (113)
T 1s7o_A 13 NALFEFYAALLTDKQMNYIELYYA----DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 75 (113)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHH----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4577788 8999999999999985 779999999999999999999999999999999876554
No 24
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.74 E-value=4.9e-09 Score=82.28 Aligned_cols=59 Identities=25% Similarity=0.276 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 307 MKQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 307 ~~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
....+..++..|+++|++||.+++ +|+|++|||+.||+|.+||+++++++++||+..-.
T Consensus 19 ~~~~l~~~l~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 19 HMKKRAELYEMLTEREMEILLLIA-----KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp ------CTGGGCCSHHHHHHHHHH-----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 345678899999999999999954 67999999999999999999999999999987544
No 25
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.72 E-value=1.9e-08 Score=79.61 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhh
Q 046578 309 QELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371 (379)
Q Consensus 309 ~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~ 371 (379)
..+..++..|+++|++||.+++ +|+|++|||+.||+|.+||+++++++++||+..-+.
T Consensus 19 ~~l~~~l~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~ 76 (95)
T 3c57_A 19 SHMQDPLSGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRT 76 (95)
T ss_dssp --------CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHhcCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 4578889999999999999974 779999999999999999999999999999976543
No 26
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.68 E-value=2.5e-08 Score=75.62 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhh
Q 046578 309 QELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371 (379)
Q Consensus 309 ~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~ 371 (379)
..+..++..||++|++|+.+++ +|+|++|||+.||+|.++|++++.+++++|+..-..
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~ 65 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSAVV-----AGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLP 65 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHT-----TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 3477888999999999999953 679999999999999999999999999999975443
No 27
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.65 E-value=2.7e-08 Score=79.32 Aligned_cols=64 Identities=16% Similarity=0.060 Sum_probs=54.0
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHhhcCC---CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 306 LMKQELKELL-QTLSEREADILRLHFGLDG---QTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 306 e~~~~L~~~L-~~L~~rer~Vl~l~ygL~g---~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
...+.+..++ ..|+++|+.+|.+||++.+ ..++|++|||+.+|+|++||++. +|++++|...++
T Consensus 23 ~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k 90 (101)
T 1jhg_A 23 YQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELR 90 (101)
T ss_dssp HHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHH
T ss_pred CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHH
Confidence 3344566777 5799999999999999863 34599999999999999999999 899999988765
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.63 E-value=2.2e-08 Score=77.03 Aligned_cols=57 Identities=23% Similarity=0.294 Sum_probs=49.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhc
Q 046578 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372 (379)
Q Consensus 311 L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~ 372 (379)
+..++..|+++|++|+.+++ +|+|++|||+.||+|.+||+++++++++||+...+.+
T Consensus 15 ~~~~~~~Lt~~e~~vl~l~~-----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~ 71 (82)
T 1je8_A 15 TERDVNQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVE 71 (82)
T ss_dssp --CCGGGSCHHHHHHHHHHT-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHccCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHH
Confidence 56778899999999999953 6799999999999999999999999999999875543
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.40 E-value=2.8e-07 Score=68.64 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=47.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhc
Q 046578 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372 (379)
Q Consensus 311 L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~ 372 (379)
....+..|+++|++|+.+++ +|+|.+|||+.||+|.++|++++.+++++|+..-...
T Consensus 5 ~~~~~~~L~~~e~~il~~~~-----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~ 61 (74)
T 1fse_A 5 EFQSKPLLTKREREVFELLV-----QDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQ 61 (74)
T ss_dssp ---CCCCCCHHHHHHHHHHT-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred cCCCCCCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH
Confidence 34556789999999999953 6799999999999999999999999999998765433
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=98.30 E-value=1e-06 Score=68.99 Aligned_cols=51 Identities=25% Similarity=0.201 Sum_probs=43.9
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 313 ~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.....|+++|++|+.+.+ +|+|.+|||+.||+|..||+.++.++++||.-.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~ 75 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-----KGFTNQEIADALHLSKRSIEYSLTSIFNKLNVG 75 (90)
T ss_dssp ----CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccccCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 446789999999999987 779999999999999999999999999998654
No 31
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=98.22 E-value=1.7e-06 Score=68.97 Aligned_cols=48 Identities=29% Similarity=0.351 Sum_probs=44.0
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
..|+++|++||.+.+ +|+|.+|||+.||+|.+||+..+.++++||.-.
T Consensus 33 ~~Lt~re~~Vl~l~~-----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSCCHHHHHHHHHHH-----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 579999999999865 679999999999999999999999999999754
No 32
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=98.19 E-value=1.6e-06 Score=62.09 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 320 ~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
|+|++|+.+ +. +|+|.+|||+.||+|.+||+..+.++++||+..-.
T Consensus 1 ~re~~vl~l-~~----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~ 46 (61)
T 2jpc_A 1 LRERQVLKL-ID----EGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKV 46 (61)
T ss_dssp CHHHHHHHH-HH----TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSH
T ss_pred CHHHHHHHH-HH----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCCH
Confidence 478999999 42 77999999999999999999999999999987544
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.77 E-value=3.6e-05 Score=70.34 Aligned_cols=47 Identities=19% Similarity=0.133 Sum_probs=43.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.|+++|++|+.+.. +|+|.+|||+.||||.+||+.++.++++||.-.
T Consensus 175 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (236)
T 2q0o_A 175 MLSPREMLCLVWAS-----KGKTASVTANLTGINARTVQHYLDKARAKLDAE 221 (236)
T ss_dssp SCCHHHHHHHHHHH-----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 59999999999865 779999999999999999999999999999754
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.76 E-value=3.6e-05 Score=70.24 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=43.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.|+++|++|+.+.. +|+|.+|||+.||+|.+||+.++.++++||.-.
T Consensus 173 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 173 WLDPKEATYLRWIA-----VGKTMEEIADVEGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp CCCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 59999999999864 779999999999999999999999999999654
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.65 E-value=5.5e-05 Score=69.36 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=43.8
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
..|+++|++|+.+.. +|+|.+|||+.||||..||+..+.++++||.-.
T Consensus 174 ~~Lt~re~~vl~~~~-----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 221 (237)
T 3szt_A 174 VRLTARETEMLKWTA-----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSS 221 (237)
T ss_dssp CCCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCC
Confidence 469999999999975 779999999999999999999999999998643
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.54 E-value=9.6e-05 Score=69.02 Aligned_cols=47 Identities=26% Similarity=0.300 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.|+++|++|+.+.. +|+|.+|||+.||||..||+.++.++++||.-.
T Consensus 197 ~Lt~re~~vl~~~~-----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~ 243 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-----RGKTNWEIATILNISERTVKFHVANVIRKLNAN 243 (265)
T ss_dssp CCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 69999999999986 779999999999999999999999999998754
No 37
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=97.42 E-value=0.00034 Score=55.64 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR 366 (379)
.+++.-..|-.++| .+|+|+.|||+.||+|+.+|++.+.+|.+.+-
T Consensus 18 ~~~~~~~~~A~lyY----v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVL----VDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHH----TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 67888889999999 47799999999999999999999999998764
No 38
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=97.35 E-value=0.0003 Score=47.11 Aligned_cols=40 Identities=33% Similarity=0.214 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|++.++..+...+. +++|..|||+.||||++||++++.+
T Consensus 5 ~l~~~~~~~i~~~~~----~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 578888865555552 6799999999999999999988754
No 39
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=97.05 E-value=0.00035 Score=48.61 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 319 ~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
++..+.|+.+ +. +|+|++|||+.||+|++||++++.+|
T Consensus 18 ~~~~~~i~~l-~~----~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 18 DDLVSVAHEL-AK----MGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHH-HH----TTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred HHHHHHHHHH-HH----cCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 3445566666 42 66999999999999999999987654
No 40
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=97.00 E-value=0.0021 Score=56.33 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 311 L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
+...+..|+++|++|+.+.. +|+|.+|||+.+|+|..||+.+++++++||...
T Consensus 136 ~~~~~~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~ 188 (208)
T 1yio_A 136 LEQLFSSLTGREQQVLQLTI-----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVR 188 (208)
T ss_dssp HHHHHHTSCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhcCHHHHHHHHHHH-----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 34455689999999998764 679999999999999999999999999999643
No 41
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.86 E-value=0.0018 Score=57.09 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=43.1
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
..|+++|++|+.+.. +|+|.+|||+.+++|..||+.++++.++||.-.
T Consensus 153 ~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~ 200 (215)
T 1a04_A 153 NQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMKLK 200 (215)
T ss_dssp GGSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCCC
Confidence 359999999999875 679999999999999999999999999999643
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=96.69 E-value=0.0023 Score=57.21 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
..|+++|++|+.+.. +|+|.+|||+.+++|..||+..+++.++||.-
T Consensus 148 ~~LT~rE~~vL~~l~-----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~ 194 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 194 (225)
T ss_dssp TTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 369999999998765 67999999999999999999999999999854
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=96.28 E-value=0.0037 Score=55.68 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=41.8
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
..|+++|++|+.+.. +|+|.+|||+.+++|..||+.++++.++||.-
T Consensus 158 ~~Lt~rE~~vL~~l~-----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~ 204 (225)
T 3klo_A 158 AKLTKREQQIIKLLG-----SGASNIEIADKLFVSENTVKTHLHNVFKKINA 204 (225)
T ss_dssp HTSCHHHHHHHHHHT-----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCC
T ss_pred ccCCHHHHHHHHHHH-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 469999999999854 67999999999999999999999999888753
No 44
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=95.83 E-value=0.024 Score=51.06 Aligned_cols=56 Identities=29% Similarity=0.463 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 308 ~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.......+..|+++++.++.+.. .+++.++||+.||+|..+|+..+.++++||.-.
T Consensus 189 ~~~~~~~l~~L~~r~~~i~~~~~-----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~~~ 244 (258)
T 3p7n_A 189 RERAAEMLKTLSPRQLEVTTLVA-----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLNLK 244 (258)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 35577888999999999999876 679999999999999999999999999998644
No 45
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=95.51 E-value=0.012 Score=47.81 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
.|+.| .+|+.+.. +|+|++|||+.+|+|..||.+ ..++|
T Consensus 61 aLs~R-~eV~klL~-----~G~syreIA~~~g~S~aTIsR-v~r~L 99 (119)
T 3kor_A 61 SLSQR-LQVAKMIK-----QGYTYATIEQESGASTATISR-VKRSL 99 (119)
T ss_dssp HHHHH-HHHHHHHH-----HTCCHHHHHHHHCCCHHHHHH-HHHHH
T ss_pred HHHHH-HHHHHHHH-----cCCCHHHHHHHHCCCHHHHHH-HHHHH
Confidence 34555 56777654 669999999999999999987 34444
No 46
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=95.21 E-value=0.019 Score=50.61 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhC---CCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLS---LSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~Lg---iS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|++|+.+.. -+..+.+|.+|||+.++ +|..||+.++++.++||..
T Consensus 145 ~Lt~rE~~vl~~l~-~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 145 HLPKKEFEILLFLA-ENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 59999999998765 11113499999999999 9999999999999999974
No 47
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=95.15 E-value=0.0099 Score=39.84 Aligned_cols=25 Identities=0% Similarity=0.021 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
++.|..+||+.+|||++||++++.+
T Consensus 20 ~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 20 KGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp TTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 5699999999999999999987654
No 48
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=95.07 E-value=0.026 Score=50.56 Aligned_cols=50 Identities=10% Similarity=0.014 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|.+|+.+..- +-...+|.+|||+.+ ++|..||+..+++.++||..
T Consensus 153 ~LT~rE~~vL~~l~~-~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~ 207 (238)
T 2gwr_A 153 SLTPLEFDLLVALAR-KPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEK 207 (238)
T ss_dssp CCCHHHHHHHHHHHH-STTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHH-CCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 599999999987651 111349999999999 99999999999999999964
No 49
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=94.94 E-value=0.023 Score=50.37 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|.+|+.+.. -+..+.+|.+|||+.+ ++|..||+.++++.++||..
T Consensus 156 ~Lt~rE~~vL~~l~-~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~ 210 (230)
T 2oqr_A 156 TLPLKEFDLLEYLM-RNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEA 210 (230)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHH-hCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 49999999999765 1212459999999999 99999999999999999964
No 50
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=94.65 E-value=0.03 Score=49.27 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=41.9
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLS-----LSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~Lg-----iS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|.+|+.+..- +....+|.+|||+.++ +|..||+.++++.++||..
T Consensus 151 ~Lt~rE~~vL~~l~~-~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLVM-NKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHh-CCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 599999999987651 1113399999999998 9999999999999999974
No 51
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=94.54 E-value=0.054 Score=40.49 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 320 ~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+.++.|+.+..-....++.|..|||+.||+|+.+|++++++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~ 54 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 54 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 34566765443222124699999999999999999877555
No 52
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=94.33 E-value=0.029 Score=49.66 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLS-----LSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~Lg-----iS~~~Vr~~~~rAl~kLR~~ 368 (379)
.|+++|.+|+.+..- +....+|.+|||+.++ +|..||+.++++.++||...
T Consensus 159 ~Lt~rE~~vL~~l~~-g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~~ 214 (233)
T 1ys7_A 159 DLTKREFDLLAVLAE-HKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAG 214 (233)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHh-CCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhccC
Confidence 499999999987651 1112399999999998 99999999999999999753
No 53
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=93.74 E-value=0.087 Score=46.51 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 322 er~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
-..+..+ | ..|+|+.|||+.||||+.+|++++..|.
T Consensus 14 G~ria~~-y----~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 14 GLRLMRM-K----NDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHHH-H----HTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHH-H----HcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 3445555 5 2679999999999999999999988765
No 54
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=93.55 E-value=0.048 Score=49.46 Aligned_cols=51 Identities=27% Similarity=0.224 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHH-----HhCCCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGR-----LLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe-----~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.|+++|++|+.+.. -+....+|.+|||+ .++++..||+..+++.++||...
T Consensus 182 ~LT~rE~evL~ll~-~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~~ 237 (249)
T 3q9s_A 182 RLSPKEFDILALLI-RQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRDL 237 (249)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCCC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhcC
Confidence 59999999999876 12124599999999 58899999999999999999754
No 55
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=93.54 E-value=0.17 Score=38.22 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 321 rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++.|+.+..-...++..|..|||+.||+|+.+|++.+++
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4556665443222124799999999999999998766544
No 56
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=93.49 E-value=0.024 Score=49.96 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=42.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLS-----LSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~Lg-----iS~~~Vr~~~~rAl~kLR~~ 368 (379)
.|+++|++|+.+..- +....+|.+|||+.++ +|..||+.++++.++||...
T Consensus 143 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~~ 198 (223)
T 2hqr_A 143 EVKGKPFEVLTHLAR-HRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKP 198 (223)
T ss_dssp CCCSTTTHHHHHHHH-TCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHTT
T ss_pred ecCHHHHHHHHHHHh-CCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhcC
Confidence 499999999987651 1012299999999999 99999999999999999753
No 57
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=93.43 E-value=0.1 Score=42.65 Aligned_cols=40 Identities=33% Similarity=0.214 Sum_probs=32.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|++.++..+...+- .|+|..+||+.||+|++||++++.+
T Consensus 6 ~~s~~~r~~i~~~~~----~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 467777766665552 6699999999999999999998765
No 58
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.37 E-value=0.2 Score=40.62 Aligned_cols=46 Identities=7% Similarity=0.214 Sum_probs=35.5
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCC-CCHHHHHHHhCCCHHHHHHHHHH
Q 046578 313 ELLQTLSEREADILRLHFGLDGQTP-VSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 313 ~~L~~L~~rer~Vl~l~ygL~g~e~-~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
...-.|++.+..|+..... .+ .+ +|..|||+.+|++++||++.+.+
T Consensus 19 ~~~~gLt~~e~~il~~L~~-~~-~~~~t~~eLa~~l~~s~sTV~r~L~~ 65 (123)
T 3r0a_A 19 KCALNLTKADLNVMKSFLN-EP-DRWIDTDALSKSLKLDVSTVQRSVKK 65 (123)
T ss_dssp HHHHTCCHHHHHHHHHHHH-ST-TCCEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH-CC-CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4456799999999986552 11 23 89999999999999999776554
No 59
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=93.27 E-value=0.015 Score=53.40 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHHHH
Q 046578 311 LKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLS--LSRERIRQIRGIALTKLQ 366 (379)
Q Consensus 311 L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~Lg--iS~~~Vr~~~~rAl~kLR 366 (379)
+.+.+..|++.++.+.. .++ .+.|++|||+.|| +|.++|+.++.+|++.|.
T Consensus 192 l~e~i~~l~~~~~~L~~-~~~----~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 192 MVETINKLSRTARQLQQ-ELG----REPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHH-HhC----CCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 45566778877777544 443 6799999999999 999999999999987763
No 60
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=93.20 E-value=0.15 Score=40.46 Aligned_cols=42 Identities=14% Similarity=-0.013 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
.+++.++.-+...+- +++|..+||+.||+|++||++++.+-.
T Consensus 17 ~~s~~~r~~i~~~~~----~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA----DGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456665555444442 569999999999999999999987753
No 61
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=92.85 E-value=0.17 Score=45.54 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=43.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|.+|+.+.. -+.+..+|.+||++.+ +++..||+.++++.++||..
T Consensus 176 ~LT~rE~~iL~~l~-~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 59999999999875 3323779999999999 78999999999999999975
No 62
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=92.50 E-value=0.27 Score=41.00 Aligned_cols=42 Identities=14% Similarity=0.339 Sum_probs=33.3
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
..|++.++.|+.+... ....|..|||+.+|+|+++|++++.+
T Consensus 5 ~~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 46 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE---NSRLTYRELADILNTTRQRIARRIDK 46 (151)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3589999999875442 25699999999999999999877554
No 63
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=92.44 E-value=0.13 Score=39.03 Aligned_cols=26 Identities=8% Similarity=0.141 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.+.|..|||+.||+|+++|++++++-
T Consensus 29 ~g~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 29 EGATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp STEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44999999999999999999887653
No 64
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=92.17 E-value=0.29 Score=40.58 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
.+++.++.-+...+- +|+|..+||+.+|||++||++++.+-.
T Consensus 32 ~~s~e~r~~iv~~~~----~G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 32 PLPDVVRQRIVELAH----QGVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 466666555554442 569999999999999999999988754
No 65
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=92.03 E-value=0.3 Score=36.95 Aligned_cols=27 Identities=11% Similarity=0.008 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
.+.|..+||+.+||++++|++++.+..
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 448999999999999999999876543
No 66
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=91.91 E-value=0.49 Score=36.23 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.+..|+..... ..+.|..|||+.+|+++++|++.+.+-
T Consensus 17 ~l~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tv~~~l~~L 58 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE---RGGMRVSEIARELDLSARFVRDRLKVL 58 (109)
T ss_dssp CCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 578888888876542 256999999999999999998776553
No 67
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=91.86 E-value=0.31 Score=40.38 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|++.++.|+.+... ....|..|||+.+|+|+++|++++.+
T Consensus 2 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 42 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK---DSRLSMRELGRKIKLSPPSVTERVRQ 42 (144)
T ss_dssp CCCHHHHHHHHHHHH---CSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478889998886542 25699999999999999999877554
No 68
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=91.70 E-value=0.42 Score=38.12 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhc-CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 309 QELKELLQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 309 ~~L~~~L~~L~~rer~Vl~l~ygL-~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
..|......|++.|+.|.....-= .....+|..|||+..|+|.+||.+..++
T Consensus 10 ~~i~~~~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 10 AIIQSMXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHH
Confidence 356677889999999998765310 0013599999999999999999887654
No 69
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=91.61 E-value=0.4 Score=39.99 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.++.|+.+... + ...|+.|||+.+|+|+++|++++.+-
T Consensus 4 ~ld~~~~~il~~L~~-~--~~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN-D--GKAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp CCCHHHHHHHHHHHH-C--TTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478888888875541 2 46999999999999999998775553
No 70
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=91.52 E-value=0.45 Score=36.49 Aligned_cols=45 Identities=11% Similarity=0.310 Sum_probs=34.3
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 314 ~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
....|++.+..+|...+.-+ .+.|..|||+.+|+|+++|++.+.+
T Consensus 15 ~~~~l~~~~~~~l~~l~~~~--~~~t~~ela~~l~is~~tv~~~l~~ 59 (109)
T 2d1h_A 15 CCYKITDTDVAVLLKMVEIE--KPITSEELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp HHHTCCHHHHHHHHHHHHHC--SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHcC--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34578998888876544112 5699999999999999999876544
No 71
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=91.30 E-value=0.45 Score=39.68 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.++.|+.+... ....|+.|||+.+|+|+++|++++.+-
T Consensus 5 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~L 46 (152)
T 2cg4_A 5 LIDNLDRGILEALMG---NARTAYAELAKQFGVSPETIHVRVEKM 46 (152)
T ss_dssp CCCHHHHHHHHHHHH---CTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478888888876532 256999999999999999998876553
No 72
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=91.29 E-value=0.36 Score=37.04 Aligned_cols=43 Identities=16% Similarity=0.049 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..++..+.-+...| +.+ ++.|..+||+.+|||+++|++++.+.
T Consensus 5 ~ys~e~k~~~v~~~-~~~-~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 5 TYSEEFKRDAVALY-ENS-DGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCCHHHHHHHHHHH-TTG-GGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HHc-CCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 35565554443333 221 26999999999999999999998653
No 73
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=91.17 E-value=0.29 Score=42.89 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHhh-cC-CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 317 TLSEREADILRLHFG-LD-GQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 317 ~L~~rer~Vl~l~yg-L~-g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.|+++|++|+....- +. .+.+.|.+|||+.||+|..+|++++.
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 589999999987531 11 11468999999999999998876654
No 74
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=91.10 E-value=0.52 Score=38.29 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=37.0
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 308 KQELKELLQT----LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 308 ~~~L~~~L~~----L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
...+...+.. |++.|..||...+. ..+.|..|||+.+|++.++|++.+.+-
T Consensus 21 ~~~~~~~l~~~~~~lt~~~~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 75 (142)
T 3ech_A 21 RTRIQSELDCQRLDLTPPDVHVLKLIDE---QRGLNLQDLGRQMCRDKALITRKIREL 75 (142)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHH---TTTCCHHHHHHHHC---CHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3445566654 89999999987663 257999999999999999998876653
No 75
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=91.02 E-value=0.27 Score=46.40 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046578 324 DILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363 (379)
Q Consensus 324 ~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~ 363 (379)
.|..++| .+++|.+|||+.||+|+.||++.+.++.+
T Consensus 12 ~ia~l~~----~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 12 KIAQLYY----EQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHH----TSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4666776 36799999999999999999999988755
No 76
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=90.95 E-value=0.37 Score=34.67 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
+++..+.||.+.-- ++ ..+|..|||+.+|+|+++|.+++.
T Consensus 8 m~~~~~~IL~~L~~-~~-~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 8 GDNLEQKILQVLSD-DG-GPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp -CHHHHHHHHHHHH-HC-SCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-cC-CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 44455566664321 11 468999999999999999876643
No 77
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=90.95 E-value=0.42 Score=39.77 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|++.++.||.+... + ...|..|||+.+|+|+++|++++.+
T Consensus 4 ~ld~~~~~iL~~L~~-~--~~~s~~ela~~lg~s~~tv~~~l~~ 44 (150)
T 2w25_A 4 ALDDIDRILVRELAA-D--GRATLSELATRAGLSVSAVQSRVRR 44 (150)
T ss_dssp CCCHHHHHHHHHHHH-C--TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 488999999886531 2 4699999999999999999877554
No 78
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=90.91 E-value=0.36 Score=33.61 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 318 LSEREADILRLHFGLDGQTPVS----CKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S----~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
.++..+.-+...+ . .+.| ..+||..+||+.++|++++.+ .+.++..+
T Consensus 6 ys~efK~~~~~~~--~--~g~s~~~~~~~vA~~~gIs~~tl~~W~~~-~~~~~~~~ 56 (59)
T 2glo_A 6 FTPHFKLQVLESY--R--NDNDCKGNQRATARKYNIHRRQIQKWLQC-ESNLRSSV 56 (59)
T ss_dssp CCHHHHHHHHHHH--H--HCTTTTTCHHHHHHHTTSCHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHH--H--cCCCcchHHHHHHHHHCcCHHHHHHHHHH-HHHHHHHH
Confidence 4455444443333 1 3478 999999999999999999765 45565554
No 79
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=90.85 E-value=0.8 Score=36.87 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=39.9
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 308 KQELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 308 ~~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
...+...+. .|++.|..|+...+. .|.++.|..|||+.+|+++++|++.+.+-
T Consensus 17 ~~~~~~~~~~~~lt~~~~~vL~~l~~-~~~~~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 17 KQKADQKLEQFDITNEQGHTLGYLYA-HQQDGLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp HHHHHHHHGGGTCCHHHHHHHHHHHH-STTTCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHh-cCCCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 344555554 589999999987663 22247999999999999999998776553
No 80
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=90.79 E-value=1.1 Score=36.05 Aligned_cols=52 Identities=8% Similarity=0.095 Sum_probs=38.5
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+...+. .|++.|..|+...+. .+..+.|..|||+.+|+++++|++.+.+-
T Consensus 21 ~~~~~~~~~~~lt~~~~~iL~~l~~-~~~~~~~~~ela~~l~~~~~tvs~~l~~L 74 (141)
T 3bro_A 21 TRFDIFAKKYDLTGTQMTIIDYLSR-NKNKEVLQRDLESEFSIKSSTATVLLQRM 74 (141)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH-TTTSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH-CCCCCcCHHHHHHHHCCCcchHHHHHHHH
Confidence 34444454 589999999887663 22237999999999999999998766553
No 81
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=90.75 E-value=0.43 Score=40.26 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|++.++.|+.+... + ...|..|||+.+|+|+++|++++.+
T Consensus 7 ~ld~~~~~il~~L~~-~--~~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE-N--GRLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp CCCHHHHHHHHHHHH-C--TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 488889998886542 2 4589999999999999999887654
No 82
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=90.71 E-value=0.43 Score=39.04 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
|++.++.|+..... + ...|+.|||+.+|+|+++|++.+.+-
T Consensus 2 ld~~~~~il~~L~~-~--~~~~~~ela~~lg~s~~tv~~~l~~L 42 (141)
T 1i1g_A 2 IDERDKIILEILEK-D--ARTPFTEIAKKLGISETAVRKRVKAL 42 (141)
T ss_dssp CCSHHHHHHHHHHH-C--TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67778888875431 2 46899999999999999998775543
No 83
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=90.64 E-value=0.76 Score=37.23 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|++.+..++.+.+ +.+ .+.|..|||+.+|+++++|++.+.+
T Consensus 23 gl~~~~~~il~~L~-~~~-~~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 23 GLNKSVGAVYAILY-LSD-KPLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp TCCHHHHHHHHHHH-HCS-SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHH-HcC-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 58999999987764 332 5699999999999999999877654
No 84
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=90.55 E-value=0.72 Score=39.83 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 308 KQELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 308 ~~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
...+...+..|++.|..||...+... ..+.|..+||+.+|++.++|++.+.+-
T Consensus 29 ~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~l~~L 81 (189)
T 3nqo_A 29 QIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRLVANL 81 (189)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455666679999999998765211 257999999999999999998776553
No 85
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=90.39 E-value=0.49 Score=39.25 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
|++.++.|+.+.. . ....|..|||+.+|+|+++|++++.+
T Consensus 1 ld~~~~~il~~L~--~-~~~~~~~ela~~lg~s~~tv~~~l~~ 40 (150)
T 2pn6_A 1 MDEIDLRILKILQ--Y-NAKYSLDEIAREIRIPKATLSYRIKK 40 (150)
T ss_dssp CCHHHHHHHHHHT--T-CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHH--H-cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5677888887543 1 24699999999999999999877554
No 86
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=90.38 E-value=0.52 Score=37.40 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHhhcC--CCCCCCHHHHHHHhCCCHHHHHHH
Q 046578 318 LSEREADILRLHFGLD--GQTPVSCKEIGRLLSLSRERIRQI 357 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~--g~e~~S~~EIAe~LgiS~~~Vr~~ 357 (379)
+++.|+.-+..|+-+. =.+|+|+.||++.+|+|..||.+.
T Consensus 37 ~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv 78 (107)
T 3frw_A 37 CTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISRV 78 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHH
Confidence 6777765554332111 015699999999999999999763
No 87
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=90.30 E-value=1.1 Score=36.74 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..||...+. ..+.|..|||+.+|+++++|++.+.+-
T Consensus 38 ~lt~~q~~iL~~l~~---~~~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 38 GITYSQYLVMLTLWE---ENPQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp TCCHHHHHHHHHHHH---SSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 589999999887653 367999999999999999998876654
No 88
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=90.24 E-value=2.1 Score=32.52 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 319 ~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
++....|+.+. + .+++..|||+.+|+|+++|++.+..
T Consensus 30 ~~~r~~Il~~L---~--~~~~~~eLa~~l~is~~tv~~~L~~ 66 (96)
T 1y0u_A 30 NPVRRKILRML---D--KGRSEEEIMQTLSLSKKQLDYHLKV 66 (96)
T ss_dssp CHHHHHHHHHH---H--TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH---c--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46666676654 2 4599999999999999999877544
No 89
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=90.21 E-value=0.98 Score=36.16 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=37.7
Q ss_pred HHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 310 ELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 310 ~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.+...+. .|++.+..|+...+. ..+.|..|||+.+|+++++|++.+.+-
T Consensus 17 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~s~~tvs~~l~~L 67 (138)
T 3bpv_A 17 FIGRELGHLNLTDAQVACLLRIHR---EPGIKQDELATFFHVDKGTIARTLRRL 67 (138)
T ss_dssp HHHHHSGGGTCCHHHHHHHHHHHH---STTCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444 589999999887653 256999999999999999998776553
No 90
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=90.09 E-value=0.53 Score=39.86 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
|++.++.|+.+.- -+ ...|+.|||+.+|+|+++|++++.+-
T Consensus 1 lD~~d~~il~~L~-~~--~~~s~~~la~~lg~s~~tv~~rl~~L 41 (162)
T 3i4p_A 1 MDRLDRKILRILQ-ED--STLAVADLAKKVGLSTTPCWRRIQKM 41 (162)
T ss_dssp CCHHHHHHHHHHT-TC--SCSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HC--CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5677888887653 12 46899999999999999999886653
No 91
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=90.05 E-value=1.1 Score=34.77 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=33.1
Q ss_pred HHHHHhcCC-HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 311 LKELLQTLS-EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 311 L~~~L~~L~-~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+..++..|. +....|+.+.. + .+++..|||+.+|+|+++|++++.+
T Consensus 16 ~~~~~~~l~~~~r~~IL~~L~--~--~~~~~~ela~~l~is~stvs~~L~~ 62 (106)
T 1r1u_A 16 VTEIFKALGDYNRIRIMELLS--V--SEASVGHISHQLNLSQSNVSHQLKL 62 (106)
T ss_dssp HHHHHHHTCSHHHHHHHHHHH--H--CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH--h--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 445555555 55566666543 2 4589999999999999999887554
No 92
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=89.96 E-value=0.77 Score=36.38 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh-cCCCCCCCHHHHHHHhCCCHHHHHHHHHH----HHHHHHhHHh
Q 046578 309 QELKELLQTLSEREADILRLHFG-LDGQTPVSCKEIGRLLSLSRERIRQIRGI----ALTKLQQTNI 370 (379)
Q Consensus 309 ~~L~~~L~~L~~rer~Vl~l~yg-L~g~e~~S~~EIAe~LgiS~~~Vr~~~~r----Al~kLR~~l~ 370 (379)
..|......|++.|+.|.....- ......+|..|+|+..|+|.+||.+..++ +..-||..+.
T Consensus 6 ~~I~~~~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l~ 72 (107)
T 3iwf_A 6 YKIDNQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLS 72 (107)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46778889999999999875431 00124699999999999999999887664 4555555554
No 93
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=89.92 E-value=0.55 Score=40.30 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|++.++.||.+..- + ...|+.|||+.+|+|+++|++++.+
T Consensus 24 ~ld~~d~~IL~~L~~-~--~~~s~~eLA~~lglS~~tv~~rl~~ 64 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN-D--GKAPLREISKITGLAESTIHERIRK 64 (171)
T ss_dssp CCCHHHHHHHHHHHH-C--TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 589999999886542 2 4699999999999999999877554
No 94
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=89.79 E-value=1.1 Score=36.08 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.+..|+...+. ..+.|..|||+.+|+|+++|++.+.+-
T Consensus 28 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 28 GISLTRYSILQTLLK---DAPLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp SSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999999887652 246999999999999999998776553
No 95
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=89.77 E-value=0.81 Score=36.69 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=37.1
Q ss_pred HHHHHHh-cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 310 ELKELLQ-TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 310 ~L~~~L~-~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.+...+. .|++.|..|+...+. ..+.|..|||+.+|+++++|++.+.+-
T Consensus 27 ~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~L 76 (140)
T 2nnn_A 27 LFANGIGNGLTPTQWAALVRLGE---TGPCPQNQLGRLTAMDAATIKGVVERL 76 (140)
T ss_dssp HHHHHCSSCCCHHHHHHHHHHHH---HSSBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444443 699999999887652 246999999999999999998776553
No 96
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=89.72 E-value=0.26 Score=37.97 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=34.7
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
..|++.|..|+...+-. |.+|.+++|||+.+|++..+|.+++.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~-g~~gi~qkeLa~~~~l~~~tvt~iLk~ 59 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEINKILKN 59 (91)
T ss_dssp CCSCSSHHHHHHHHHHH-CTTCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHc-CCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 45888888888877622 236899999999999999998766554
No 97
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=89.57 E-value=0.63 Score=37.80 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=32.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..|+...+. .+.|..|||+.+|+++++|++.+.+-
T Consensus 35 ~lt~~~~~iL~~l~~----~~~t~~eLa~~l~~s~~tvs~~l~~L 75 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE----ESLTNSELARRLNVSQAAVTKAIKSL 75 (146)
T ss_dssp CCCHHHHHHHHHHTT----CCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 378888888876552 23999999999999999998776553
No 98
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=89.49 E-value=1.3 Score=36.45 Aligned_cols=50 Identities=12% Similarity=0.210 Sum_probs=37.9
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+...+. .|++.|..||...+. ..+.|..|||+.+|++.++|++.+.+-
T Consensus 30 ~~~~~~l~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~i~~~tvs~~l~~L 81 (155)
T 3cdh_A 30 AQFHDHIRAQGLRVPEWRVLACLVD---NDAMMITRLAKLSLMEQSRMTRIVDQM 81 (155)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHSS---CSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444443 689999998876652 256999999999999999998876553
No 99
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=89.46 E-value=0.88 Score=37.59 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=39.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 308 KQELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 308 ~~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
...+...+. .|+..|..|+.+.+. ....++|..|||+.+|++.++|.+.+.+-
T Consensus 21 ~~~~~~~l~~~gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l~~~~~tvs~~v~~L 75 (147)
T 4b8x_A 21 LGEVDAVVKPYGLTFARYEALVLLTF-SKSGELPMSKIGERLMVHPTSVTNTVDRL 75 (147)
T ss_dssp HHHHHHHHGGGTCCHHHHHHHHHHHT-SGGGEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH-CCCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344556665 589999999887652 21245899999999999999998876553
No 100
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=89.44 E-value=0.29 Score=35.23 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+|++|||+.+|+|++||++.++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 47899999999999999999874
No 101
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=89.43 E-value=1.2 Score=35.61 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=39.4
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 308 KQELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 308 ~~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
...+...+. .|++.|..|+...+. ..+.|..+||+.+|+++++|++.+.+-.
T Consensus 20 ~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 20 DRLLNEYLSPLDITAAQFKVLCSIRC---AACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp HHHHHHHHTTTTSCHHHHHHHHHHHH---HSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHh---cCCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 344555554 589999998887653 2468999999999999999988765543
No 102
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=89.40 E-value=0.81 Score=37.12 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=38.3
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+...+. .|++.|..|+...+. ..+.|..|||+.+|+++++|++.+.+-
T Consensus 23 ~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 23 KKYTNYLKEYDLTYTGYIVLMAIEN---DEKLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHSCT---TCEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 34555554 589999888876542 367999999999999999998776654
No 103
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=89.26 E-value=0.66 Score=39.75 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=32.9
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
..|++.++.|+.+..- + ...|+.|||+.+|+|+++|++++.+
T Consensus 13 ~~ld~~d~~IL~~L~~-~--~~~s~~eLA~~lglS~~tv~~~l~~ 54 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK-D--ARLTISELSEQLKKPESTIHFRIKK 54 (171)
T ss_dssp -CCCHHHHHHHHHHHH-C--TTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3588888888886542 2 4589999999999999999877554
No 104
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=89.23 E-value=1.5 Score=36.17 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=39.0
Q ss_pred HHHHHHH---hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 309 QELKELL---QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 309 ~~L~~~L---~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
..+...+ ..|++.|..|+...+. ..+.|..|||+.+|++.++|++.+.+-.
T Consensus 35 ~~~~~~l~~~~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~Le 88 (162)
T 2fa5_A 35 GNIAKVYGDRYGMAIPEWRVITILAL---YPGSSASEVSDRTAMDKVAVSRAVARLL 88 (162)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHH---STTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444 3799999999887653 2579999999999999999988766543
No 105
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=89.11 E-value=1.3 Score=36.10 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=38.2
Q ss_pred HHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 310 ELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 310 ~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
.+...+. .|++.|..|+...+. ..+.|..|||+.+|+++++|++.+.+-.
T Consensus 30 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 30 RGREILTNYPITPPQFVALQWLLE---EGDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 3445554 589999998886653 2469999999999999999988765543
No 106
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=89.06 E-value=0.55 Score=34.74 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=34.6
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLS----LSRERIRQIRGIA 361 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~Lg----iS~~~Vr~~~~rA 361 (379)
..|++.|..|+...+- ..+.|..||++.++ ++.+||.+.+.+-
T Consensus 5 ~~lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL 51 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLRL 51 (82)
T ss_dssp CCCCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 4689999999987653 25799999999997 7999998776553
No 107
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=89.05 E-value=1.2 Score=36.03 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=37.9
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+...+. .|++.|..||...+. ..+.|..|||+.+|++.++|++.+.+-
T Consensus 18 ~~~~~~~~~~~lt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 69 (145)
T 3g3z_A 18 NVFDKWIGQQDLNYNLFAVLYTLAT---EGSRTQKHIGEKWSLPKQTVSGVCKTL 69 (145)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444443 589999999887653 245999999999999999998776553
No 108
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=89.05 E-value=1.3 Score=36.36 Aligned_cols=42 Identities=7% Similarity=0.128 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..|+...+. ..+.|..|||+.+|++.++|++.+.+-
T Consensus 38 ~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 79 (154)
T 2qww_A 38 GLTIQQLAMINVIYS---TPGISVADLTKRLIITGSSAAANVDGL 79 (154)
T ss_dssp TCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999999887653 256999999999999999998876654
No 109
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=88.81 E-value=1.3 Score=36.02 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..|+...+. ..+.|..+||+.+|+++++|++.+.+-
T Consensus 37 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~~vs~~l~~L 78 (152)
T 3bj6_A 37 GVTVGQRAILEGLSL---TPGATAPQLGAALQMKRQYISRILQEV 78 (152)
T ss_dssp TCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 689999999887653 246999999999999999998776553
No 110
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=88.78 E-value=0.81 Score=37.28 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=35.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
.|++.|..|+...+. ..+.|..|||+.+|+++++|++.+.+-.
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~Le 79 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
T ss_dssp TCCHHHHHHHHHHHH---SSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 588999888887653 2479999999999999999988766543
No 111
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=88.75 E-value=0.59 Score=32.61 Aligned_cols=24 Identities=8% Similarity=0.091 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHh-----CCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLL-----SLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~L-----giS~~~Vr~~~~ 359 (379)
...|.+||++.| ++|..||++.+.
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 579999999999 999999998877
No 112
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=88.74 E-value=0.97 Score=33.38 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.+.|..|||+.+|+|+++|++.+.+
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4589999999999999999776554
No 113
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=88.72 E-value=1.6 Score=35.14 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=36.5
Q ss_pred HHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 311 LKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 311 L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
+...+. .|++.|..|+...+ ..+.|..|||+.+|+++++|++.+.+-
T Consensus 26 ~~~~~~~~~l~~~~~~iL~~l~----~~~~~~~ela~~l~~s~~tvs~~l~~L 74 (146)
T 2gxg_A 26 LNRRLGELNLSYLDFLVLRATS----DGPKTMAYLANRYFVTQSAITASVDKL 74 (146)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHh----cCCcCHHHHHHHhCCCchhHHHHHHHH
Confidence 444443 58999999887655 256999999999999999998776553
No 114
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=88.70 E-value=0.8 Score=37.17 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=33.5
Q ss_pred HhcCCHHHHHHHHHHhhc-CCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 315 LQTLSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 315 L~~L~~rer~Vl~l~ygL-~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
+..|++.+..++...+.+ ....+.|..+||+.+|+++++|++.+.+-
T Consensus 8 ~~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 8 MSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHH
Confidence 346888888887755432 11257899999999999999998776553
No 115
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=88.66 E-value=0.31 Score=42.74 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=32.6
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCC--CHHHHHHHhCCC-HHHHHHHHHH
Q 046578 316 QTLSEREADILRLHFGLDGQTPV--SCKEIGRLLSLS-RERIRQIRGI 360 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~--S~~EIAe~LgiS-~~~Vr~~~~r 360 (379)
..|+++|+.++...-.+-...++ |++|+|+.+|++ +++|++++.+
T Consensus 2 ~~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 2 KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 35888888877643211111357 999999999999 9999988663
No 116
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=88.65 E-value=0.26 Score=41.48 Aligned_cols=40 Identities=23% Similarity=0.127 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++..++.-+...+- +++|..+||+.||||++||++++.+
T Consensus 25 ~~s~e~r~~ii~l~~----~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAH----QGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHH----HTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 355555554444442 5699999999999999999998765
No 117
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=88.63 E-value=1.2 Score=36.57 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=38.4
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
..+...+. .|++.|..|+...+. ..+.|..|||+.+|++.++|++.+.+-.
T Consensus 34 ~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 34 KLYRGLLKALDLTYPQYLVMLVLWE---TDERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp HHHHHHTTTTTCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 34444443 588999988876653 2569999999999999999988766543
No 118
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=88.52 E-value=0.98 Score=36.59 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=38.0
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+...+. .|++.|..|+...+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 24 ~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (143)
T 3oop_A 24 LFLMRSIASYDVTPEQWSVLEGIEA---NEPISQKEIALWTKKDTPTVNRIVDVL 75 (143)
T ss_dssp HHHHHHTTTSSSCHHHHHHHHHHHH---HSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHhhhCCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 34444444 589999999887653 256999999999999999998776553
No 119
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=88.51 E-value=1.8 Score=34.13 Aligned_cols=40 Identities=8% Similarity=0.164 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.++.+..||....- .+.|..|||+.+|+|+++|++.+.+-
T Consensus 30 ~~~~~~~il~~L~~----~~~s~~ela~~l~is~stvsr~l~~L 69 (119)
T 2lkp_A 30 ATPSRLMILTQLRN----GPLPVTDLAEAIGMEQSAVSHQLRVL 69 (119)
T ss_dssp CCHHHHHHHHHHHH----CCCCHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH----CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45777778776552 36999999999999999998876553
No 120
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=88.39 E-value=0.84 Score=34.83 Aligned_cols=46 Identities=26% Similarity=0.290 Sum_probs=31.5
Q ss_pred HHHHHhcCC-HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 311 LKELLQTLS-EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 311 L~~~L~~L~-~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+..++..|. +....|+.+.. . .+.|..|||+.+|+|+++|++.+..
T Consensus 13 ~~~~~~~l~~~~r~~Il~~L~---~-~~~~~~ela~~l~is~~tvs~~L~~ 59 (98)
T 3jth_A 13 AVVLLKAMANERRLQILCMLH---N-QELSVGELCAKLQLSQSALSQHLAW 59 (98)
T ss_dssp HHHHHHHHCSHHHHHHHHHTT---T-SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh---c-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 444455454 55555554432 2 5699999999999999999876543
No 121
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=88.25 E-value=0.95 Score=33.53 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
+..|..+||.+||++.+.|.+.+++-.
T Consensus 28 ~~~Ta~~IAkkLg~sK~~vNr~LY~L~ 54 (75)
T 1sfu_A 28 DYTTAISLSNRLKINKKKINQQLYKLQ 54 (75)
T ss_dssp CEECHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 448999999999999988887776643
No 122
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=87.99 E-value=1.3 Score=36.88 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=38.5
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+...+. .|++.|..||...+. ..+.|..|||+.+|++.++|.+.+.+-
T Consensus 33 ~~~~~~l~~~glt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 33 KYLTEHLSALEISLPQFTALSVLAA---KPNLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444 689999999987653 256999999999999999998776553
No 123
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=87.96 E-value=0.98 Score=37.43 Aligned_cols=51 Identities=4% Similarity=0.090 Sum_probs=39.2
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 308 KQELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 308 ~~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
...+...+. .|++.|..||...+. ..+.|..|||+.+|+++++|++.+.+-
T Consensus 36 ~~~~~~~l~~~~lt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 88 (159)
T 3s2w_A 36 QIYIGKKIEPYGIGSGQFPFLMRLYR---EDGINQESLSDYLKIDKGTTARAIQKL 88 (159)
T ss_dssp HHHHHHHHGGGTCCTTTHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555554 589999998886653 356999999999999999998876654
No 124
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=87.92 E-value=1.2 Score=37.49 Aligned_cols=42 Identities=10% Similarity=0.153 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..||...+. ..+.|..|||+.+|++.++|++.+.+-
T Consensus 42 ~lt~~~~~iL~~L~~---~~~~t~~eLa~~l~is~~tvs~~l~~L 83 (168)
T 2nyx_A 42 NITIPQFRTLVILSN---HGPINLATLATLLGVQPSATGRMVDRL 83 (168)
T ss_dssp SCCHHHHHHHHHHHH---HCSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 689999999887653 246999999999999999998876553
No 125
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=87.76 E-value=1.2 Score=36.51 Aligned_cols=42 Identities=7% Similarity=0.060 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..|+...+. ..+.|..+||+.+|+++++|++.+.+-
T Consensus 34 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 34 GVTPAQLFVLASLKK---HGSLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp TCCHHHHHHHHHHHH---HSEEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 799999999887652 246899999999999999998776553
No 126
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=87.67 E-value=1.5 Score=33.63 Aligned_cols=46 Identities=20% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHHHHhcCC-HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 311 LKELLQTLS-EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 311 L~~~L~~L~-~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+..++..|. |.-..|+.+.. + .+.+..|||+.+|+|+++|++++.+
T Consensus 13 ~~~~~~~l~~~~r~~Il~~L~--~--~~~~~~ela~~l~is~~tvs~~L~~ 59 (102)
T 3pqk_A 13 VANLLKTLSHPVRLMLVCTLV--E--GEFSVGELEQQIGIGQPTLSQQLGV 59 (102)
T ss_dssp HHHHHHHHCSHHHHHHHHHHH--T--CCBCHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH--h--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 445555554 44555555433 2 4599999999999999999876543
No 127
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=87.66 E-value=0.9 Score=34.34 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=32.0
Q ss_pred HHHhcC-CHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 313 ELLQTL-SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 313 ~~L~~L-~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++..| ++.+..|+.... . ..+.|..|||+.+|+|+++|++.+.+
T Consensus 16 ~~~~~l~~~~~~~il~~l~--~-~~~~s~~ela~~l~is~~tvs~~l~~ 61 (99)
T 3cuo_A 16 ALLKAMSHPKRLLILCMLS--G-SPGTSAGELTRITGLSASATSQHLAR 61 (99)
T ss_dssp HHHHHHCSHHHHHHHHHHT--T-CCSEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHH--h-CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 334434 466777776543 2 24799999999999999999877554
No 128
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=87.60 E-value=1.5 Score=35.84 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 308 KQELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 308 ~~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
...+...+. .|++.|..||...+. . .++.|..|||+.+|+++++|++.+.+
T Consensus 25 ~~~~~~~l~~~glt~~q~~vL~~l~~-~-~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 25 LGAVNKALVPTGLRVRSYSVLVLACE-Q-AEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHGGGTCCHHHHHHHHHHHH-S-TTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHh-C-CCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 344555554 589999999886542 2 24689999999999999999887655
No 129
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=87.44 E-value=1.4 Score=35.59 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=37.6
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+...+. .|++.|..|+...+. . ..+.|..+||+.+|+++++|++.+.+-
T Consensus 24 ~~~~~~~~~~~l~~~~~~iL~~l~~-~-~~~~t~~~la~~l~~s~~~vs~~l~~L 76 (146)
T 2fbh_A 24 AELDRRLSHLGLSQARWLVLLHLAR-H-RDSPTQRELAQSVGVEGPTLARLLDGL 76 (146)
T ss_dssp HHHHHHTGGGCCTTTHHHHHHHHHH-C-SSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH-c-CCCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 33444444 588889888876621 2 267999999999999999998776553
No 130
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=87.42 E-value=1.1 Score=36.20 Aligned_cols=50 Identities=10% Similarity=0.021 Sum_probs=37.6
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+...+. .|++.+..|+...+. ..+.|..+||+.+|+++++|++.+.+-
T Consensus 16 ~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 16 SISNIEFKELSLTRGQYLYLVRVCE---NPGIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp HHHHHHTGGGTCTTTHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---CcCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 33444444 588889888876653 246899999999999999998776554
No 131
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=87.28 E-value=0.86 Score=37.81 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..|+...+. ..+.|..|||+.+|+++++|++.+.+-
T Consensus 49 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 49 GLSTAKMRALAILSA---KDGLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp TCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 589999999887653 256999999999999999998876553
No 132
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=87.26 E-value=0.91 Score=36.70 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..|+...+. ..+.|..+||+.+|+++++|++.+.+-
T Consensus 30 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~s~~tvs~~l~~L 71 (145)
T 2a61_A 30 GITPAQFDILQKIYF---EGPKRPGELSVLLGVAKSTVTGLVKRL 71 (145)
T ss_dssp TCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHHH
Confidence 589999988887653 246999999999999999998776553
No 133
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=87.14 E-value=1.1 Score=34.53 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 319 ~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+|....|+..... ..+.+..|||+.+|+|+++|++++..
T Consensus 26 ~~~Rl~IL~~l~~---~~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 26 HPMRLKIVNELYK---HKALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp SHHHHHHHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4666677733221 14699999999999999999988553
No 134
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=86.88 E-value=0.7 Score=35.75 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 320 ~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
+++..|+.+..- .+.|..+||+.+|+|..||++.+..-
T Consensus 7 ~R~~~I~~~l~~----~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIVE----TKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHHH----HCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 345555554431 34899999999999999999988753
No 135
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.73 E-value=0.79 Score=36.85 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..|+...+. ..+.|..|||+.+|+++++|++.+.+-
T Consensus 33 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~~vs~~l~~L 74 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ---QGEMESYQLANQACILRPSMTGVLARL 74 (142)
T ss_dssp TCCHHHHHHHHHHHH---HCSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHhHHHHHHHHH
Confidence 589999988887653 246999999999999999998776553
No 136
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=86.59 E-value=2.1 Score=34.53 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
.|++.|..||...+. ..+ |..|||+.+|+++++|++.+.+-.
T Consensus 34 ~lt~~~~~iL~~l~~---~~~-~~~~la~~l~~~~~tvs~~l~~Le 75 (144)
T 3f3x_A 34 NLSYLDFSILKATSE---EPR-SMVYLANRYFVTQSAITAAVDKLE 75 (144)
T ss_dssp SCCHHHHHHHHHHHH---SCE-EHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCC-CHHHHHHHHCCChhHHHHHHHHHH
Confidence 689999999987653 234 999999999999999988766543
No 137
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=86.54 E-value=1.4 Score=44.17 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=60.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCccc-cCCCCcccccCCCCCCCChHHHHHHHHHHHHHHHHHhcCCH
Q 046578 242 RRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVT-DRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSE 320 (379)
Q Consensus 242 gr~pt~~eia~~Lgis~~~~~~~l~~~~~~iSLd~~~~-~~~~~~l~d~i~~~~~~~pe~~~~~~e~~~~L~~~L~~L~~ 320 (379)
+...+..++|+.+|+|..+++.-+...+....-...+. ...+..+. ........+ + ...+.+
T Consensus 30 ~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy~L~----~~~~~~~~~----------~---~~~~~~ 92 (485)
T 3sqn_A 30 VPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIRLR----NQGNAQTNE----------L---WSLFLP 92 (485)
T ss_dssp CCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEEEEE----EC---CTHH----------H---HHHHGG
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEEEEe----cCcHHHHHH----------H---HHhcCH
Confidence 34478899999999999999987766433331000010 11111111 110001000 1 112233
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 321 rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
.+|....+.+.+.. +..+..++|+.+.||++||.+-+.+..+.|++
T Consensus 93 ~eR~~~Il~~LL~~-~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~ 138 (485)
T 3sqn_A 93 QSISIQLLKELLFT-KELVTTSFLSTSGVSYETLKRHIKKMNQALRD 138 (485)
T ss_dssp GSHHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34433333332332 57999999999999999999887777666654
No 138
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=86.53 E-value=0.93 Score=36.27 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=37.7
Q ss_pred HHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 310 ELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 310 ~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.+...+. .|++.|..|+...+. ..+.|..|||+.+|+++++|++.+.+-
T Consensus 21 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3bja_A 21 NLDKAIEQYDISYVQFGVIQVLAK---SGKVSMSKLIENMGCVPSNMTTMIQRM 71 (139)
T ss_dssp HHHHHTGGGTCCHHHHHHHHHHHH---SCSEEHHHHHHHCSSCCTTHHHHHHHH
T ss_pred HHHhhhhhcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhHHHHHHHHH
Confidence 3444444 589999999887653 256999999999999999998876554
No 139
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=86.48 E-value=1.3 Score=36.22 Aligned_cols=41 Identities=7% Similarity=0.155 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..|+... . ..+.|..|||+.+|+++++|++.+.+-
T Consensus 35 ~lt~~q~~iL~~l-~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (151)
T 3kp7_A 35 GISAEQSHVLNML-S---IEALTVGQITEKQGVNKAAVSRRVKKL 75 (151)
T ss_dssp TCCHHHHHHHHHH-H---HSCBCHHHHHHHHCSCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-H---cCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 6899999888765 2 367999999999999999998776553
No 140
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=86.48 E-value=1.5 Score=36.37 Aligned_cols=42 Identities=7% Similarity=0.045 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..||...+. ..+.|..|||+.+|++.++|++.+.+-
T Consensus 50 glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 91 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSA---YGELTVGQLATLGVMEQSTTSRTVDQL 91 (161)
T ss_dssp TCCHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999999887653 246999999999999999998876653
No 141
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=86.40 E-value=0.91 Score=37.41 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
.|++.|..||...+. ..+.|..|||+.+|+++++|++.+.+-.
T Consensus 41 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~Le 83 (154)
T 2eth_A 41 DMKTTELYAFLYVAL---FGPKKMKEIAEFLSTTKSNVTNVVDSLE 83 (154)
T ss_dssp HSBHHHHHHHHHHHH---HCCBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 478888888876652 2469999999999999999988765543
No 142
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=86.35 E-value=2 Score=33.35 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=32.6
Q ss_pred HHHHHhcCC-HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 311 LKELLQTLS-EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 311 L~~~L~~L~-~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+..++..|. +....|+.... + .+.+..|||+.+|+|+++|++.+.+
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L~--~--~~~~~~ela~~l~is~~tv~~~l~~ 57 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTELG--R--ADQSASSLATRLPVSRQAIAKHLNA 57 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH--H--SCBCHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHH--c--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 334455454 56666766442 2 4599999999999999999877654
No 143
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=85.97 E-value=2.2 Score=31.37 Aligned_cols=42 Identities=12% Similarity=0.178 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHh-----CCCHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLL-----SLSRERIRQIRGI 360 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~L-----giS~~~Vr~~~~r 360 (379)
+++++...|+.+.. ... ...|..||++.+ ++|.+||++.+..
T Consensus 14 ~~t~~r~~IL~~l~--~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~ 61 (83)
T 2fu4_A 14 KVTLPRLKILEVLQ--EPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQ 61 (83)
T ss_dssp CCCHHHHHHHHHHT--SGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH--hCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHH
Confidence 58888888887654 211 469999999999 9999999876543
No 144
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=85.87 E-value=2.5 Score=34.09 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
..+++.+-.-++... ++|++|+|+.+|+|+++|+++.+-
T Consensus 69 ~~~~~~~l~~~R~~~------glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 69 ETVAPEFIVKVRKKL------SLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TTCCHHHHHHHHHHT------TCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred cCCCHHHHHHHHHHc------CCCHHHHHHHHCCCHHHHHHHHCC
Confidence 346666655555554 499999999999999999998763
No 145
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=85.82 E-value=0.73 Score=35.12 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHhhcC-CCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLD-GQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~-g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|+..+..||...+.-. +....|..|||+.+|+++++|.+++.+-
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 54 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKF 54 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 47888888877654221 1123899999999999999998876553
No 146
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=85.63 E-value=0.79 Score=35.85 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.+.+....|+...+ -.| +.+|..|||+.+|+|+++|++.+.+
T Consensus 15 ~~~~~~l~Il~~l~-~~g-~~~s~~eLa~~lgvs~~tV~~~L~~ 56 (110)
T 1q1h_A 15 LLGDDVIDVLRILL-DKG-TEMTDEEIANQLNIKVNDVRKKLNL 56 (110)
T ss_dssp TSCSTTHHHHHHHH-HHC-SCBCHHHHHHTTTSCHHHHHHHHHH
T ss_pred HcChHHHHHHHHHH-HcC-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34556667776543 123 5699999999999999999765443
No 147
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=85.36 E-value=1.5 Score=38.34 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+++.++.|+.+.. + .+.|..|||+.+|+|.++|++++.+
T Consensus 18 ~d~~~~~IL~~L~--~--~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKILKLLR--N--KEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHHHHHT--T--CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--c--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6788888887654 2 4699999999999999999887654
No 148
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=85.24 E-value=1.3 Score=41.63 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=41.0
Q ss_pred HHHHHH--HhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKEL--LQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~--L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
+.+.+. ++.||+.-+++-.+|.- .++.|++|+|+.+++|.+.|..++.|.
T Consensus 233 ~~i~e~~Gl~~Lp~~L~e~a~lRl~---~pdaSL~ELge~l~isKSgVnhRlrKL 284 (295)
T 3hyi_A 233 ELIKENMGLENLPEDLRRVALVRLR---NKELSLRELGKKLNLTKSQIYSKLKRI 284 (295)
T ss_dssp HHHHHHTCGGGSCHHHHHHHHHHHH---CTTSCHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHhcCcccCCHHHHHHHHHHHH---CccccHHHHHHHhCcCHHHHHHHHHHH
Confidence 334443 36899999999999863 488999999999999999999887764
No 149
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.18 E-value=1.3 Score=32.88 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
...|.+|||+.||+|..||++.+..
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3579999999999999999877544
No 150
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=85.13 E-value=1.2 Score=34.86 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=30.8
Q ss_pred HHHHHhcCC-HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 311 LKELLQTLS-EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 311 L~~~L~~L~-~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+..++..|. +....|+.+.. + .+.|..|||+.+|+|+++|++.+.+
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~--~--~~~s~~eLa~~lgis~stvs~~L~~ 61 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLA--Q--GERAVEAIATATGMNLTTASANLQA 61 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT--T--CCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH--c--CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 334444444 33455665433 2 5689999999999999999877544
No 151
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=85.11 E-value=1.2 Score=35.94 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..|+...+. ..+.|..|||+.+|+++++|++.+.+-
T Consensus 34 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~L 75 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD---ESPVNVKKVVTELALDTGTVSPLLKRM 75 (142)
T ss_dssp TCCHHHHHHHHHHHH---SSEEEHHHHHHHTTCCTTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 689999998887653 246999999999999999998766553
No 152
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=85.09 E-value=0.78 Score=35.02 Aligned_cols=42 Identities=10% Similarity=0.149 Sum_probs=32.8
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHH----HHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEI----GRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EI----Ae~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..||...+. ..+.+..|| |+.+|++.++|++.+.+-
T Consensus 5 ~lt~~q~~iL~~l~~---~~~~~~~el~~~la~~l~is~~tvs~~l~~L 50 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD---NEGIATYDLYKKVNAEFPMSTATFYDAKKFL 50 (99)
T ss_dssp SSBCHHHHHHHHHTT---CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 477788888876552 256999999 899999999998876554
No 153
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=85.07 E-value=3 Score=34.48 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=37.0
Q ss_pred HHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 310 ELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 310 ~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.+...+. .|++.|..||...+.. .++.+..|||+.+|++.++|.+.+.+-
T Consensus 19 ~~~~~l~~~gLt~~q~~vL~~L~~~--~~~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 19 LIDHRLKPLELTQTHWVTLYNINRL--PPEQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp HHHHHTGGGCCCHHHHHHHHHHHHS--CTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHc--CCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444554 5899998888755421 256899999999999999998876553
No 154
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=85.03 E-value=0.85 Score=36.65 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=37.7
Q ss_pred HHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 310 ELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 310 ~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.+...+. .|++.|..|+...+. .+..+.|..|||+.+|++.++|.+.+.+
T Consensus 25 ~~~~~~~~~~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~ 76 (127)
T 2frh_A 25 LKSLIKKEFSISFEEFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVKI 76 (127)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444 689999999887663 2125699999999999999999877655
No 155
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=84.93 E-value=2.4 Score=35.57 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+...+. .|++.|..||...+..+ .+.|..|||+.+|++.++|.+.+.+-
T Consensus 40 ~~~~~~l~~~glt~~q~~vL~~L~~~~--~~~t~~eLa~~l~i~~~tvs~~l~~L 92 (166)
T 3deu_A 40 ALIDHRLKPLELTQTHWVTLHNIHQLP--PDQSQIQLAKAIGIEQPSLVRTLDQL 92 (166)
T ss_dssp HHHHHHTTTTTCCHHHHHHHHHHHHSC--SSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHcC--CCCCHHHHHHHHCCCHhhHHHHHHHH
Confidence 34444444 58999988888665212 56999999999999999998776553
No 156
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=84.93 E-value=3 Score=34.32 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=36.4
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCC--CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDG--QTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g--~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+...+. .|++.|..|+...+...| ..++|..|||+.+|+++++|.+.+.+-
T Consensus 20 ~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~L 76 (148)
T 4fx0_A 20 QAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVM 76 (148)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 34455554 589999998876653222 135899999999999999998877663
No 157
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=84.84 E-value=2.5 Score=33.79 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 319 ~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
++....||.+... + .+.|..|||+.+|+|+++|++++..
T Consensus 41 ~~~rl~IL~~L~~-~--~~~s~~eLa~~l~is~stvs~~L~~ 79 (122)
T 1u2w_A 41 DENRAKITYALCQ-D--EELCVCDIANILGVTIANASHHLRT 79 (122)
T ss_dssp SHHHHHHHHHHHH-S--SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-C--CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4556667765431 1 4689999999999999999987654
No 158
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=84.77 E-value=0.74 Score=34.51 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHH-HHHHHHHH
Q 046578 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRE-RIRQIRGI 360 (379)
Q Consensus 320 ~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~-~Vr~~~~r 360 (379)
+.+..|+.+-.- ..+.|..+||+.||||.. .|++.+++
T Consensus 11 ~~~~~IL~~Lk~---~g~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 11 EIKEKICDYLFN---VSDSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp HHHHHHHHHHHH---TCCEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHH---cCCcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 344555554332 246999999999999999 99888665
No 159
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=84.62 E-value=0.7 Score=31.94 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++++|+.+|+|+++|+++.+
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 459999999999999999999876
No 160
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=84.55 E-value=1.2 Score=35.31 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=35.6
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhC----CCHHHHHHHHHHHH
Q 046578 315 LQTLSEREADILRLHFGLDGQTPVSCKEIGRLLS----LSRERIRQIRGIAL 362 (379)
Q Consensus 315 L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~Lg----iS~~~Vr~~~~rAl 362 (379)
+..|++.|..|+...+- ..+.|..|||+.++ ++.++|++.+.+-.
T Consensus 5 ~~~lt~~~~~vL~~l~~---~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~ 53 (123)
T 1okr_A 5 TYEISSAEWEVMNIIWM---KKYASANNIIEEIQMQKDWSPKTIRTLITRLY 53 (123)
T ss_dssp CCCCCHHHHHHHHHHHH---HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHh---CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH
Confidence 34689999998876542 25699999999999 89999988766643
No 161
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=84.54 E-value=1.5 Score=36.72 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=36.6
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 308 KQELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 308 ~~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
...+...+. .|++.|..||...+.. |.++.|..|||+.+|++.++|.+.+.+-
T Consensus 32 ~~~~~~~~~~~glt~~q~~vL~~l~~~-~~~~~t~~eLa~~l~~~~~tvs~~l~~L 86 (168)
T 3u2r_A 32 KAIEEEIFSQFELSAQQYNTLRLLRSV-HPEGMATLQIADRLISRAPDITRLIDRL 86 (168)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHH-TTSCEEHHHHHHHC---CTHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHhc-CCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 344555554 5899999998876532 1257999999999999999998776653
No 162
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=84.48 E-value=0.64 Score=34.05 Aligned_cols=24 Identities=4% Similarity=0.183 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|+.|+|+.+|||+++|+++.+
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 349999999999999999999875
No 163
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=84.32 E-value=1.1 Score=33.90 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 319 ~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
++.+..||..... ..+.|..|||+.+|+|.++|++++.+
T Consensus 15 ~~~~~~iL~~L~~---~~~~~~~ela~~l~is~~tvs~~l~~ 53 (100)
T 1ub9_A 15 NPVRLGIMIFLLP---RRKAPFSQIQKVLDLTPGNLDSHIRV 53 (100)
T ss_dssp SHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh---cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5666677764431 15699999999999999999877554
No 164
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=84.30 E-value=2.7 Score=33.74 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 319 ~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
++....||.+.. . .+.+..|||+.+|+|+++|++++.+
T Consensus 45 ~~~rl~IL~~L~--~--~~~s~~ela~~lgis~stvs~~L~~ 82 (122)
T 1r1t_A 45 DPNRLRLLSLLA--R--SELCVGDLAQAIGVSESAVSHQLRS 82 (122)
T ss_dssp CHHHHHHHHHHT--T--CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--c--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 566667776543 2 4689999999999999999887554
No 165
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=83.93 E-value=2.5 Score=37.06 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..||...+. ..+.|..|||+.+|++.++|.+.+.+-
T Consensus 45 gLt~~q~~iL~~L~~---~~~~t~~eLa~~l~i~~stvs~~l~~L 86 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ---LNGASISEIAKFGVMHVSTAFNFSKKL 86 (207)
T ss_dssp TCCHHHHHHHHHHHH---HTSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 689999999886653 246999999999999999998876553
No 166
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=83.83 E-value=1.1 Score=36.26 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=34.6
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~ 363 (379)
.|++.|..|+...+. ..+.|..+||+.+|+++++|++.+.+-.+
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 37 NITYPQYLALLLLWE---HETLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp CCCHHHHHHHHHHHH---HSEEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 488888888876552 24689999999999999999887665443
No 167
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=83.73 E-value=14 Score=29.28 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=47.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhcCCccccCCccccCCCCcccccCCCCCCCChHHHHHHHHHHHHHHHHHhcCCHHHH-
Q 046578 245 PTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMKQELKELLQTLSEREA- 323 (379)
Q Consensus 245 pt~~eia~~Lgis~~~~~~~l~~~~~~iSLd~~~~~~~~~~l~d~i~~~~~~~pe~~~~~~e~~~~L~~~L~~L~~rer- 323 (379)
-+..+||+.+|++..++...+...... + ... ..+.. ..|++.+.
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~-------g---~~~----~~gr~---------------------~~l~~~~~~ 67 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSY-------G---TSK----RAPRR---------------------KALSVRDER 67 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGT-------T---CCC----CCCCC---------------------CSSCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHccccc-------C---CcC----CCCCC---------------------CcCCHHHHH
Confidence 578999999999999999887653211 0 000 01100 01222222
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHhC--CCHHHHHHHHHH
Q 046578 324 DILRLHFGLDGQTPVSCKEIGRLLS--LSRERIRQIRGI 360 (379)
Q Consensus 324 ~Vl~l~ygL~g~e~~S~~EIAe~Lg--iS~~~Vr~~~~r 360 (379)
.|+.+.- ....|..+|+..+| +|.+||++++.+
T Consensus 68 ~i~~~~~----~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 68 NVIRAAS----NSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp HHHHHHH----HCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHHh----CCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 2222211 13489999999999 899999999876
No 168
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=83.58 E-value=0.77 Score=32.85 Aligned_cols=25 Identities=4% Similarity=-0.089 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|++|+|+.+|+|+++|+++.+-
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3499999999999999999998763
No 169
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=83.38 E-value=2.2 Score=38.86 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=35.3
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 314 LLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 314 ~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.-..|++.+..||..... ..+.|..|||+.+|++++||++++.+
T Consensus 146 ~~~~L~~~~~~IL~~L~~---~~~~s~~eLA~~lglsksTv~r~L~~ 189 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYE---TKGTGITELAKMLDKSEKTLINKIAE 189 (244)
T ss_dssp HHSCCCHHHHHHHHHHHH---HTCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 445799999999986432 25699999999999999999877554
No 170
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=83.37 E-value=0.8 Score=32.01 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|+.++|+.+|+|+++|+++.+.
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4599999999999999999998653
No 171
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=83.30 E-value=1.5 Score=35.15 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=31.3
Q ss_pred cCCHHHH-HHHHHHhhcCCCCCC-CHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 046578 317 TLSEREA-DILRLHFGLDGQTPV-SCKEIGRLLSLSRERIRQIRGIALTKL 365 (379)
Q Consensus 317 ~L~~rer-~Vl~l~ygL~g~e~~-S~~EIAe~LgiS~~~Vr~~~~rAl~kL 365 (379)
.+++.++ +|+.++.- .+. +..+||+.|||++++|+++++..-..+
T Consensus 7 ~~t~e~K~~iv~~~~~----~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEE----NPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CCCHHHHHHHHHHHHH----CTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred eCCHHHHHHHHHHHHH----CCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 4677776 45555432 334 455999999999999999987754433
No 172
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=83.09 E-value=0.82 Score=32.14 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|+.++|+.+|+|+++|+++.+
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 459999999999999999999875
No 173
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=83.06 E-value=1.8 Score=35.60 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
.|++.|..||...+. . ..+.|..|||+.+|++.++|++.+.+-.
T Consensus 44 ~l~~~~~~iL~~L~~-~-~~~~~~~ela~~l~i~~~tvs~~l~~Le 87 (160)
T 3boq_A 44 GLSLAKFDAMAQLAR-N-PDGLSMGKLSGALKVTNGNVSGLVNRLI 87 (160)
T ss_dssp SCCHHHHHHHHHHHH-C-TTCEEHHHHHHHCSSCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-c-CCCCCHHHHHHHHCCChhhHHHHHHHHH
Confidence 699999999887632 1 2579999999999999999988766543
No 174
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=82.97 E-value=0.85 Score=31.69 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|+.++|+.+|+|+++|+++.+
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHc
Confidence 349999999999999999999876
No 175
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=82.89 E-value=1.2 Score=32.12 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+++..-.-++... ++|++|+|+.+|||+++|+++..-
T Consensus 11 ~~g~~lr~~R~~~------gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 11 VAPEFIVKVRKKL------SLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCHHHHHHHHHHT------TCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCHHHHHHHHHHc------CCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4444444444443 499999999999999999998753
No 176
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=82.83 E-value=1.2 Score=38.36 Aligned_cols=24 Identities=8% Similarity=0.329 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
+|+|..+||+.||+|++||++++.
T Consensus 157 ~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 157 QGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHh
Confidence 569999999999999999988764
No 177
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=82.82 E-value=1 Score=39.70 Aligned_cols=32 Identities=9% Similarity=0.262 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 323 ADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 323 r~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
+.|+.++. +|+|..+||+.||+|++||++++.
T Consensus 166 ~~i~~~~~-----~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEMLE-----EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 45666543 569999999999999999988764
No 178
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=82.75 E-value=1.5 Score=32.31 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++|+|+.+|+|+++|+++++
T Consensus 30 ~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 30 SGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 459999999999999999999876
No 179
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=82.72 E-value=0.85 Score=33.03 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++++|+.+|||+++|+++.+
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 459999999999999999999875
No 180
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=82.63 E-value=0.92 Score=33.21 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|++++|+.+|||+++|+++.+-
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5699999999999999999998764
No 181
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=82.46 E-value=2 Score=35.08 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=35.9
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 046578 315 LQTLSEREADILRLHFGLDGQTPVSCKEIGRLLS----LSRERIRQIRGIA 361 (379)
Q Consensus 315 L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~Lg----iS~~~Vr~~~~rA 361 (379)
+..|++.|..|+...+..+ .+.|..||++.++ ++.+||.+.+.+-
T Consensus 4 ~~~lt~~e~~vL~~L~~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSRT--EPQTVRQVHEALSARRDLAYTTVMAVLQRL 52 (138)
T ss_dssp GGGCCHHHHHHHHHHHTCS--SCEEHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhcC--CCCCHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 3579999999998765211 4699999999998 8999998877664
No 182
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=82.26 E-value=0.26 Score=47.20 Aligned_cols=43 Identities=12% Similarity=0.260 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~ 363 (379)
+.+++..|+...|. .++.|++|||+.||+|+.||++.+.+..+
T Consensus 18 ~~~r~~~iL~~l~~---~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 18 VLQERFQILRNIYW---MQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp ----------------------------------------------
T ss_pred hhHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56677777776553 35799999999999999999988776543
No 183
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=82.15 E-value=0.59 Score=33.76 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=20.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.|++|||+..|+|..||++.++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 6999999999999999998865
No 184
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=82.04 E-value=1.7 Score=34.41 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=34.8
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhC----CCHHHHHHHHHHH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLS----LSRERIRQIRGIA 361 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~Lg----iS~~~Vr~~~~rA 361 (379)
..|++.|..|+...+- ..+.|..|||+.++ ++.+||...+.|-
T Consensus 6 ~~Lt~~q~~vL~~L~~---~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD---KKSVSANEIVVEIQKYKEVSDKTIRTLITRL 52 (126)
T ss_dssp CCCCHHHHHHHHHHHH---SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---cCCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Confidence 3689999999987663 24699999999997 5899998877664
No 185
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=82.02 E-value=1.9 Score=36.65 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=38.5
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+...+. .|++.|..||...+.-++..+.|..|||+.+|++.++|++.+.+-
T Consensus 56 ~~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~L 110 (181)
T 2fbk_A 56 REIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRL 110 (181)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444554 589999999887663221124899999999999999998876553
No 186
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=82.01 E-value=0.96 Score=36.91 Aligned_cols=44 Identities=7% Similarity=0.188 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..|+...+. .+..+.|..|||+.+|+++++|++.+.+-
T Consensus 38 glt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~~vs~~l~~L 81 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYE-NQESGIIQKDLAQFFGRRGASITSMLQGL 81 (148)
T ss_dssp TCCHHHHHHHHHHHH-HTTTCCCHHHHHHC------CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 699999999887663 21257999999999999999998776553
No 187
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=81.95 E-value=1.6 Score=35.40 Aligned_cols=43 Identities=7% Similarity=0.095 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHhhc-CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 318 LSEREADILRLHFGL-DGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 318 L~~rer~Vl~l~ygL-~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
|++.+..++...+.+ ....+.|..+||+.+|+|+++|++.+.+
T Consensus 2 ls~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~ 45 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 445554444433322 1125699999999999999999877654
No 188
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.35 E-value=1.7 Score=35.16 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
|++.+..||...+.-. .+.|..+||+.+|+++++|++.+.+-
T Consensus 33 l~~~~~~iL~~l~~~~--~~~~~~~la~~l~i~~~~vs~~l~~L 74 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLG--GDVTPSELAAAERMRSSNLAALLREL 74 (147)
T ss_dssp HHHHHHHHHHHHHHTT--SCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 5677777776554101 56999999999999999998876554
No 189
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=81.34 E-value=1 Score=32.98 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++|+|+.+|+|+++|+++.+
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 459999999999999999999875
No 190
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=81.30 E-value=1.1 Score=32.97 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|+|+.++|+.+|+|+++|++.+.+
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6699999999999999999988764
No 191
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=81.27 E-value=1.1 Score=34.10 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|+.|+|+.+|||+++|+++.+-
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4599999999999999999998763
No 192
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=81.21 E-value=1.3 Score=32.38 Aligned_cols=22 Identities=5% Similarity=-0.034 Sum_probs=20.1
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 046578 339 SCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 339 S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+..++|+.||||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 6999999999999999999754
No 193
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=81.16 E-value=1.1 Score=32.02 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++++|+.+|+|+++|+++.+
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 349999999999999999999876
No 194
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=81.15 E-value=1.1 Score=32.13 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|+.++|+.+|+|+++|+++.+
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHC
Confidence 459999999999999999999875
No 195
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=81.12 E-value=1.1 Score=31.63 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|++++|+.+|+|+++|+++.+-
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4599999999999999999998753
No 196
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.82 E-value=4.4 Score=29.85 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHhhcCC---C--CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 318 LSEREADILRLHFGLDG---Q--TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g---~--e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
+++.|..+|...|--++ . ......+||..+|++...|..+....+.|.|+.
T Consensus 15 ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 15 FSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 67777888877762110 0 001356899999999999999999988888774
No 197
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=80.75 E-value=1.3 Score=31.51 Aligned_cols=24 Identities=17% Similarity=-0.075 Sum_probs=22.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
++.+|+|+.+|+|++||+++.+++
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 789999999999999999988765
No 198
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=80.67 E-value=1.1 Score=32.22 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=20.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.|+.++|+.||+|+++|++++.
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHH
Confidence 4999999999999999999874
No 199
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=80.60 E-value=1.4 Score=32.51 Aligned_cols=25 Identities=8% Similarity=0.187 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|++++|+.+|+|+++|+++.+-
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4599999999999999999998863
No 200
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=80.50 E-value=1.2 Score=31.71 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++++|+.+|+|+++|+++.+
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 459999999999999999999876
No 201
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=80.46 E-value=1.4 Score=32.10 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.| |+.++|+.+|||+++|+++.+.
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 46 9999999999999999999875
No 202
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=80.37 E-value=1.1 Score=33.32 Aligned_cols=24 Identities=4% Similarity=0.160 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++|+|+.+|+|+++|+++.+
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~ 49 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC
Confidence 559999999999999999999875
No 203
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=80.35 E-value=4.5 Score=34.22 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=32.1
Q ss_pred HHhcCCHHHHHHHHHH--hhcC---CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 314 LLQTLSEREADILRLH--FGLD---GQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 314 ~L~~L~~rer~Vl~l~--ygL~---g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+=.++++..+.-..+. -++. +.+++|..|||+.+|||++|++++...
T Consensus 20 ~~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 20 LKQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 3446777766655432 1111 113699999999999999999998773
No 204
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=80.29 E-value=2 Score=37.17 Aligned_cols=42 Identities=19% Similarity=0.065 Sum_probs=33.6
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
..|+|.|+......+ ++ .|+|..+||+.+|+|+++|++++.-
T Consensus 34 edL~piE~A~a~~~L-~~--~G~t~eeiA~~lG~s~s~V~~~LrL 75 (178)
T 1r71_A 34 NELTPREIADFIGRE-LA--KGKKKGDIAKEIGKSPAFITQHVTL 75 (178)
T ss_dssp TCCCHHHHHHHHHHH-HH--TTCCHHHHHHHHTCCHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHH-HH--cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 368998887776655 33 5699999999999999999987653
No 205
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=80.26 E-value=2 Score=34.14 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 319 ~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.+....|+.+.. . .+.+..|||+.+|+|+++|++++.+
T Consensus 20 ~~~r~~IL~~L~--~--~~~~~~eLa~~lgis~stvs~~L~~ 57 (118)
T 2jsc_A 20 DPTRCRILVALL--D--GVCYPGQLAAHLGLTRSNVSNHLSC 57 (118)
T ss_dssp SHHHHHHHHHHH--T--TCCSTTTHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--c--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 355666776543 2 4589999999999999999877543
No 206
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=80.16 E-value=1.5 Score=31.46 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|+.++|+.+|+|+++|+++.+.
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4599999999999999999998753
No 207
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=79.91 E-value=1.3 Score=32.34 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|++++|+.+|+|+++|+++.+-
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 4599999999999999999998753
No 208
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=79.89 E-value=1.2 Score=32.40 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|+.|+|+.+|+|+++|+++.+
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 459999999999999999999876
No 209
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=79.76 E-value=2 Score=30.20 Aligned_cols=36 Identities=6% Similarity=-0.048 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 321 rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
-|+.+|...+-- .+.+..+.|+.||||+.++.+.+.
T Consensus 19 ~E~~~i~~aL~~---~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 19 FEKIFIEEKLRE---YDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHHH---TTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCHHHHHHHHCcCHHHHHHHHH
Confidence 355555543321 235788999999999999987654
No 210
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=79.64 E-value=1.7 Score=30.57 Aligned_cols=25 Identities=4% Similarity=-0.120 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhC--CCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLS--LSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~Lg--iS~~~Vr~~~~r 360 (379)
.++|++++|+.+| +|+++|+++.+-
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 4599999999999 999999998763
No 211
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=79.63 E-value=4.2 Score=30.15 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
...+..|||+.||+|..||++-+.+
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4589999999999999999987655
No 212
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=79.46 E-value=1 Score=31.52 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=19.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.|+.++|+.+|||+++|+++.
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 599999999999999999985
No 213
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=79.19 E-value=2.7 Score=34.06 Aligned_cols=46 Identities=17% Similarity=0.129 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHhhc-C-CCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGL-D-GQTPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL-~-g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
.|++.|-.|+...+.. + |....|..+||+.+|+|.++|.+.+.+-.
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le 76 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL 76 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4667776655543322 1 33458999999999999999987766543
No 214
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=78.77 E-value=4.2 Score=30.64 Aligned_cols=37 Identities=5% Similarity=0.102 Sum_probs=29.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhchh
Q 046578 338 VSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILNNL 374 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~~L 374 (379)
.+++.+|+.+|++.++|+++..--+.++...+...++
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~~~~~~~~lLa~Lgl 61 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVLEW 61 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HhhHHHHHHhCCCHHHHhhhhhhHHHHHHHHHHHhcc
Confidence 7899999999999999999888666666666655443
No 215
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=78.68 E-value=2.2 Score=33.87 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=31.8
Q ss_pred HHHHhcCC-HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 312 KELLQTLS-EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 312 ~~~L~~L~-~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
..++..|. |....||.+.. + .+.+..|||+.+|+|+++|++++..
T Consensus 9 ~~~~~al~~~~R~~Il~~L~--~--~~~~~~eLa~~l~is~~tvs~hL~~ 54 (118)
T 3f6o_A 9 NGIFQALADPTRRAVLGRLS--R--GPATVSELAKPFDMALPSFMKHIHF 54 (118)
T ss_dssp HHHHHHHTSHHHHHHHHHHH--T--CCEEHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH--h--CCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 34444444 55566666544 2 5689999999999999999877543
No 216
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=78.28 E-value=4.1 Score=30.14 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHhhcCC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 318 LSEREADILRLHFGLDG-QTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g-~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
+++.|..+|.-.|-.+- .......+||+.+|+|+..|..+....+.|.|+.
T Consensus 10 fT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 56666666666553221 1334567899999999999999999998888765
No 217
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=78.01 E-value=5 Score=27.33 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=36.9
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.+++.|..+|...|-.+.. ....-.+||..+|++...|..+...-+.|.|+.
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 4677777888777643211 122356789999999999999998887777753
No 218
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=78.00 E-value=2.1 Score=33.44 Aligned_cols=24 Identities=8% Similarity=0.271 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.|+|++|+|+.+|||+++|+++.+
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHC
Confidence 569999999999999999999875
No 219
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=77.85 E-value=2.7 Score=31.63 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|++++|+.+|+|+++|+++.+.
T Consensus 21 ~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 5699999999999999999998753
No 220
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=77.82 E-value=2.3 Score=33.90 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHh--CCCHHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLL--SLSRERIRQIRGI 360 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L--giS~~~Vr~~~~r 360 (379)
+++.++.||.+.- -+ ...|..+||+.+ |+|+.+|++++.+
T Consensus 11 md~~d~~IL~~L~-~~--g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIH-EE--GNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHH-HH--SCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-Hc--CCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 7788888887643 11 369999999999 9999999988654
No 221
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=77.65 E-value=1.5 Score=32.68 Aligned_cols=25 Identities=4% Similarity=0.080 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|++++|+.+|+|+++|+++.+-
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3499999999999999999998763
No 222
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=77.64 E-value=3.1 Score=34.21 Aligned_cols=47 Identities=17% Similarity=0.004 Sum_probs=35.6
Q ss_pred cCCHHHHHHHHHHhhcC--CCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLD--GQTPVSCKEIGRLLSLSRERIRQIRGIALT 363 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~--g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~ 363 (379)
.|++.|-.++...+.+. |..+.|..+||+.+|++..+|.+.+.+-.+
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 58888877776554332 345689999999999999999887766544
No 223
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=77.59 E-value=3.7 Score=35.83 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=34.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 312 KELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 312 ~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
...-.-|+..||-.-..++ ++.+...+++++|+.+|||++.|++.+.-|
T Consensus 18 ~N~~rplS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 18 GSHYRPTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp -----CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 3444567777777766666 443356899999999999999998877655
No 224
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=77.28 E-value=7.8 Score=26.62 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHHhhc---CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGL---DGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL---~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.+++.+..+|.-.|.- +.+ ....-.+||..+|+|...|..+....+.+.|+.
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4677888888877742 211 112355799999999999999999888887753
No 225
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=77.27 E-value=3.5 Score=30.64 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|+.|+|+.+|+|+++|+++.+
T Consensus 25 ~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 25 KGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 559999999999999999999886
No 226
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=77.25 E-value=1.8 Score=33.56 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=22.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
.|..+||..+||+.++|++++.+..
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7999999999999999999987753
No 227
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=77.08 E-value=7.4 Score=27.69 Aligned_cols=55 Identities=13% Similarity=0.035 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHhh---cCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhh
Q 046578 317 TLSEREADILRLHFG---LDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371 (379)
Q Consensus 317 ~L~~rer~Vl~l~yg---L~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~ 371 (379)
.+|+.+..+|...|. -+.+ ....-.++|..+|+|...|..+....+.|+++.+..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 578888888887763 1211 112366899999999999999999999999887544
No 228
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=76.96 E-value=1.6 Score=33.33 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++++|+.+|||+++|+++.+
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 459999999999999999999875
No 229
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=76.85 E-value=2.1 Score=32.22 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|+.++|+.+|+|+++|+++++.
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 3499999999999999999998864
No 230
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=76.41 E-value=1.9 Score=33.77 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|+.|+|+.+|||+++|+++++
T Consensus 26 ~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 26 DKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp TSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 569999999999999999999886
No 231
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=76.37 E-value=3.4 Score=33.79 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046578 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTK 364 (379)
Q Consensus 320 ~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~k 364 (379)
.+.++|... | .|.+..|+|.++|+|..+|++++++..+.
T Consensus 81 ~Rn~~I~~~-f-----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-F-----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-C-----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-h-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 466677764 4 45899999999999999999998876654
No 232
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=76.21 E-value=8 Score=27.49 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHhhcCC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 318 LSEREADILRLHFGLDG-QTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g-~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
+++.|..+|...|-.+. .......+||..+|++...|..+...-+.+.|+..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 55666666666553221 12345778999999999999999999888887753
No 233
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=76.13 E-value=3.8 Score=35.32 Aligned_cols=39 Identities=33% Similarity=0.346 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 320 ~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
++.+.|+.+..- + ....|.+|||+.+|+|+.||++.+.+
T Consensus 21 ~R~~~Il~~L~~-~-~~~~s~~eLa~~l~vS~~Ti~rdi~~ 59 (187)
T 1j5y_A 21 ERLKSIVRILER-S-KEPVSGAQLAEELSVSRQVIVQDIAY 59 (187)
T ss_dssp HHHHHHHHHHHH-C-SSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-c-CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 566667665431 1 14589999999999999999988664
No 234
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=75.80 E-value=0.55 Score=40.84 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 322 er~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
-+.|+.++- +|+|..+||+.||||++||++++...
T Consensus 148 ~~~i~~l~~-----~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 148 WEQAGRLLA-----QGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 345665543 56999999999999999999887654
No 235
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=75.41 E-value=7.7 Score=30.92 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=40.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|..+|.+.. .......|.++|.+.+ ..+..+|...+++.++||..
T Consensus 43 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 97 (121)
T 2hwv_A 43 ELTHREFELLYYLA-KHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIED 97 (121)
T ss_dssp ECCHHHHHHHHHHH-HTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCS
T ss_pred ECCHHHHHHHHHHH-HcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhh
Confidence 58999999988765 3434789999999998 67888999888888888864
No 236
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=75.30 E-value=3.7 Score=31.22 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
...+..|||+.||+|..||++-+.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4589999999999999999887654
No 237
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=75.22 E-value=25 Score=26.73 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 046578 230 IAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIER 267 (379)
Q Consensus 230 i~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~ 267 (379)
+.++..-+...+....+.+++|+.+|++...+......
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34455556667777789999999999999999987664
No 238
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=74.95 E-value=1.3 Score=39.59 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCH--HHHHHHhCCCHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSC--KEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~--~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|++.+..++...|.+.. ++.|. .+||+.+|+++++|++.+.+
T Consensus 3 ~lt~~~e~~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~l~~ 47 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQTVSR 47 (230)
T ss_dssp TTSSHHHHHHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 477777777766554432 35666 99999999999999877655
No 239
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=74.92 E-value=5.7 Score=31.41 Aligned_cols=50 Identities=24% Similarity=0.192 Sum_probs=40.1
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|..+|.+-. .......|.++|.+.+ ..+..+|...+++.++||..
T Consensus 41 ~Lt~~E~~LL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLI-SKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHH-HHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHH-HcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 48999999988654 3333779999999999 57888999988888888864
No 240
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=74.88 E-value=2.3 Score=33.17 Aligned_cols=24 Identities=13% Similarity=0.211 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.|+|++++|+.+|+|+++|+++.+
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 349999999999999999999886
No 241
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=74.79 E-value=3.1 Score=29.09 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=18.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
-+..+.|+.||||+.|+++.+.
T Consensus 34 gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3788999999999999976543
No 242
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=74.69 E-value=2.1 Score=32.19 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
|+++.++|+..|||++|++.+.+.
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 399999999999999999988753
No 243
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=74.69 E-value=2.4 Score=33.36 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++|+|+.+|||+++|+++..
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 459999999999999999999877
No 244
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=74.64 E-value=9.3 Score=34.65 Aligned_cols=44 Identities=18% Similarity=0.051 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.|..||...+. .+..++|..|||+.++++.++|.+.+.+-
T Consensus 155 gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l~i~~~tvt~~v~rL 198 (250)
T 1p4x_A 155 TLSFVEFTILAIITS-QNKNIVLLKDLIETIHHKYPQTVRALNNL 198 (250)
T ss_dssp SSCHHHHHHHHHHHT-TTTCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 689999999887652 22135999999999999999998776653
No 245
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=74.58 E-value=2.2 Score=32.90 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|++|+|+.+|||+++|+++.+-
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4599999999999999999998763
No 246
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=74.56 E-value=2.3 Score=39.33 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 137 G~~~~T~~~IA~~AGvs~gtlY~yF 161 (311)
T 4ich_A 137 GYHNVRIHDIASELGTSNATIHYHF 161 (311)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCccCCHHHHHHHhCCCchhHHHhC
Confidence 3567999999999999999998764
No 247
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=74.44 E-value=9 Score=29.33 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLL-SLSRERIRQIRGIALTKLQ 366 (379)
Q Consensus 336 e~~S~~EIAe~L-giS~~~Vr~~~~rAl~kLR 366 (379)
-++|+.+||+.| |.+.+||.....+.-+.+.
T Consensus 45 t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~ 76 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 76 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 459999999999 8999999887777655554
No 248
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=74.35 E-value=5.2 Score=28.82 Aligned_cols=56 Identities=9% Similarity=0.086 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHh---hcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhc
Q 046578 317 TLSEREADILRLHF---GLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372 (379)
Q Consensus 317 ~L~~rer~Vl~l~y---gL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~ 372 (379)
.+++.+..+|...| ..+.+ ....-.+||..+|+|...|..+....+.+.|+.....
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 46777888887766 21111 1123557999999999999999999999998876543
No 249
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=74.07 E-value=6 Score=28.49 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHhhc---CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhh
Q 046578 317 TLSEREADILRLHFGL---DGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL---~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~ 371 (379)
.+++.+..+|...|.- +.+ ....-.+||..+|+|...|..+....+.+.++.+..
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 3566677777665520 110 112345789999999999999999999999887543
No 250
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=73.83 E-value=2.9 Score=29.09 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.+ |+.++|+.+|+|+++|++++
T Consensus 13 ~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 13 HG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHH
T ss_pred cC-CHHHHHHHHCcCHHHHHHHH
Confidence 56 99999999999999999987
No 251
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=73.70 E-value=2.5 Score=34.91 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|+|++|+|+.+|+|+++|+++.+-
T Consensus 80 ~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5599999999999999999998863
No 252
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=73.55 E-value=2.4 Score=32.21 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 320 ~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.-|+.+|...+-- .+.+..+.|+.||||+.|+++.+.+
T Consensus 50 ~~E~~~i~~aL~~---~~gn~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 50 ELERTLLTTALRH---TQGHKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHHH---TTTCTTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4466666654421 2357779999999999999776543
No 253
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=73.41 E-value=3.1 Score=33.34 Aligned_cols=24 Identities=13% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++|+|+.+|+|+++|+++.+
T Consensus 52 ~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 52 ARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 569999999999999999999876
No 254
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=73.38 E-value=2.2 Score=32.73 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|+.++|+.+|+|+++|+++.+.
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3499999999999999999998763
No 255
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=73.30 E-value=1.9 Score=30.80 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
+|.+|+|+.||||+.|++++...++
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 6889999999999999999877643
No 256
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=73.30 E-value=1.2 Score=34.71 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=34.6
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhC----CCHHHHHHHHHHHH
Q 046578 313 ELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLS----LSRERIRQIRGIAL 362 (379)
Q Consensus 313 ~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~Lg----iS~~~Vr~~~~rAl 362 (379)
+....|++.|..|+...+- ..+.|..||++.++ ++.+||.+.+.+-.
T Consensus 28 ~~~~~LT~~e~~VL~~L~~---~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe 78 (99)
T 2k4b_A 28 EVEFNVSNAELIVMRVIWS---LGEARVDEIYAQIPQELEWSLATVKTLLGRLV 78 (99)
T ss_dssp ---CCCCCSCSHHHHHHHH---HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHh---CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH
Confidence 3344699999999987653 24699999999997 57899987766543
No 257
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=73.20 E-value=6.4 Score=29.38 Aligned_cols=56 Identities=9% Similarity=0.086 Sum_probs=41.0
Q ss_pred cCCHHHHHHHHHHh---hcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhc
Q 046578 317 TLSEREADILRLHF---GLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372 (379)
Q Consensus 317 ~L~~rer~Vl~l~y---gL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~ 372 (379)
.+++.+..+|...| ..+.+ ....-.+||..+|++...|..+....+.|.|+.....
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 46778888888776 21111 1123557999999999999999999999998876543
No 258
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=73.16 E-value=2.9 Score=33.16 Aligned_cols=25 Identities=4% Similarity=0.181 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|+|++|+|+.+|||+++|+++..-
T Consensus 19 ~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 19 RRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6699999999999999999998864
No 259
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=73.09 E-value=6.7 Score=28.96 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.8
Q ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 046578 241 LRRMPTDSEIAEMLNIHVSTVRLAIER 267 (379)
Q Consensus 241 lgr~pt~~eia~~Lgis~~~~~~~l~~ 267 (379)
.|..|+..|||+.+|+|..+++.-+..
T Consensus 21 ~g~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 21 DGAPVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 378899999999999999999977765
No 260
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=73.05 E-value=4 Score=31.68 Aligned_cols=34 Identities=6% Similarity=0.138 Sum_probs=28.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhh
Q 046578 338 VSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~ 371 (379)
.+++.+|+.+||+.++|+++...-+.++...+..
T Consensus 24 ~gq~~vA~~iGV~~StISR~k~~~~~~~~~lLa~ 57 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAV 57 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHH
Confidence 8999999999999999999888666666555544
No 261
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=72.95 E-value=1.5 Score=39.09 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=31.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCH--HHHHHHhCCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSC--KEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~--~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.|++.+..+|...|.+.. ++.+. .+||+.||++.++|++.+.+-
T Consensus 3 ~lt~~~e~yL~~i~~l~~-~~~~~~~~~la~~l~vs~~tvs~~l~~L 48 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEE-EGVTPLRARIAERLEQSGPTVSQTVARM 48 (226)
T ss_dssp CHHHHHHHHHHHHHHHHH-HTCCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 467777777776664431 23554 999999999999998876553
No 262
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=72.90 E-value=2.3 Score=32.72 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|+|+.++|+.+|+|+++|+++.+.
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4599999999999999999998864
No 263
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=72.80 E-value=7.9 Score=26.64 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.+++.|..+|...|..+.. ......+||..+|+|...|..+...-+.+.|+.
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 3567777777776642211 112356899999999999999998888887764
No 264
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=72.66 E-value=3.1 Score=31.16 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
-+..+.|+.|||++.|+++.++
T Consensus 55 GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 55 RNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 5788999999999999976543
No 265
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.65 E-value=5.3 Score=30.87 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=35.1
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
..|++.|+.|+.+..- .|.+|...++|...+|++..+|.+++.+
T Consensus 33 ~~Lt~~E~lVy~~I~~-aGn~GIw~kdL~~~tnL~~~~vtkiLK~ 76 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIED-AGNKGIWSRDVRYKSNLPLTEINKILKN 76 (95)
T ss_dssp CSCSHHHHHHHHHHHH-HTTSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 5789999988887762 3458899999999999998887655443
No 266
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=72.60 E-value=12 Score=26.35 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
.+++.|..+|...|-.+.+ ....-.+||..+|++...|..+...-+.+.|+...
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 3567777788777632211 22346789999999999999999888888877543
No 267
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=72.49 E-value=8 Score=29.08 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~~ 368 (379)
.|+++|..+|.+-. -......|.++|.+.+ ..+..+|...+++-++||...
T Consensus 22 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~ 77 (96)
T 3rjp_A 22 SLTKREYDLLNILM-TNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIP 77 (96)
T ss_dssp ECCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHCCT
T ss_pred EcCHHHHHHHHHHH-hCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhccc
Confidence 48999999998765 3333779999999988 367788888888888887654
No 268
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=72.39 E-value=7.8 Score=29.82 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~~ 368 (379)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|...+++.++||...
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~ 86 (106)
T 1gxq_A 31 EMGPTEFKLLHFFM-THPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPG 86 (106)
T ss_dssp CCCHHHHHHHHHHH-HSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGGG
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccc
Confidence 48999999998765 3434789999999988 467889999888888888653
No 269
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=72.28 E-value=3.7 Score=30.92 Aligned_cols=27 Identities=15% Similarity=0.110 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHH-HHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRER-IRQIRGIAL 362 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~-Vr~~~~rAl 362 (379)
.+.|..|||+.+|+++++ |++.+.+-.
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~Le 56 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDRLI 56 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHHHH
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHHHH
Confidence 369999999999999999 987765543
No 270
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=72.22 E-value=0.77 Score=40.00 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046578 323 ADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363 (379)
Q Consensus 323 r~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~ 363 (379)
+.|+.++- .|+|..+||+.||+|++||++++.+...
T Consensus 149 ~~i~~l~~-----~G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 149 EQAGRLLA-----QGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHH-----CCCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 34555532 5699999999999999999887665433
No 271
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=72.14 E-value=2.4 Score=32.99 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|+|+.++|+.+|+|+++|+++.+.
T Consensus 23 ~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 23 LDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5699999999999999999998763
No 272
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=71.81 E-value=4.3 Score=31.49 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=30.5
Q ss_pred HHHHhcCCHHHHH-HHHHHhhcCCCCCCCHHHHHHHh-CCCHHHHHHHHHH
Q 046578 312 KELLQTLSEREAD-ILRLHFGLDGQTPVSCKEIGRLL-SLSRERIRQIRGI 360 (379)
Q Consensus 312 ~~~L~~L~~rer~-Vl~l~ygL~g~e~~S~~EIAe~L-giS~~~Vr~~~~r 360 (379)
..++..|+.+-+. ||.... + .+.++.|||+.+ |+|.++|++.+.+
T Consensus 5 ~~~l~~l~~~~~~~IL~~L~--~--~~~~~~eLa~~l~~is~~tls~~L~~ 51 (107)
T 2hzt_A 5 EATLEVIGGKWKXVILXHLT--H--GKKRTSELKRLMPNITQKMLTQQLRE 51 (107)
T ss_dssp HHHHHHHCSTTHHHHHHHHT--T--CCBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHH--h--CCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 3455556655443 333222 2 569999999999 9999999877554
No 273
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=71.46 E-value=6 Score=30.90 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=31.3
Q ss_pred HHHHHhcCCHHHH-HHHHHHhhcCCCCCCCHHHHHHHh-CCCHHHHHHHHHH
Q 046578 311 LKELLQTLSEREA-DILRLHFGLDGQTPVSCKEIGRLL-SLSRERIRQIRGI 360 (379)
Q Consensus 311 L~~~L~~L~~rer-~Vl~l~ygL~g~e~~S~~EIAe~L-giS~~~Vr~~~~r 360 (379)
+..++.-+..+-+ .||.... . .+.++.|||+.+ |++.++|++++.+
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~--~--~~~~~~eLa~~l~~is~~tvs~~L~~ 59 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELF--Q--GTKRNGELMRALDGITQRVLTDRLRE 59 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHH--H--SCBCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHH--h--CCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 4455666664433 3443332 1 469999999999 9999999877554
No 274
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=71.43 E-value=31 Score=26.19 Aligned_cols=38 Identities=5% Similarity=0.098 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 046578 230 IAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIER 267 (379)
Q Consensus 230 i~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~ 267 (379)
+.++..-+...++...+.+++|+.+|++...+......
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34445556666777889999999999999999887654
No 275
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=71.40 E-value=14 Score=29.93 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=45.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCC---------CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 311 LKELLQTLSEREADILRLHFGLDGQT---------PVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 311 L~~~L~~L~~rer~Vl~l~ygL~g~e---------~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
|..+.-.|+..|+++|.+....-... ..+..|+++.+|++.++..+.+..|.++|.+.
T Consensus 12 Li~A~y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~r 78 (132)
T 1hkq_A 12 LIESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFNR 78 (132)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HhhccCCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhhC
Confidence 44666789999999988754322111 36789999999999999999999999999764
No 276
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=71.31 E-value=8.6 Score=26.17 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
+++.|..+|...|-.+.. ....-.+||..+|+|...|..+...-+.+.|+
T Consensus 7 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 566777777766632211 11235679999999999999999888777764
No 277
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=71.30 E-value=8.3 Score=33.04 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++..-.-++.. .++|++|+|+.+|||+++++++.+
T Consensus 90 ~s~~~lk~lR~~------~glTQ~elA~~LGvsr~tis~yE~ 125 (170)
T 2auw_A 90 VSHEMFGDWMHR------NNLSLTTAAEALGISRRMVSYYRT 125 (170)
T ss_dssp CCHHHHHHHHHH------TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCcHHHHHHHHH------cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 555544444433 569999999999999999998875
No 278
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=71.27 E-value=2.3 Score=32.15 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|+.++|+.+|+|+++|+++.+
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 459999999999999999999876
No 279
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.99 E-value=9.1 Score=27.98 Aligned_cols=53 Identities=9% Similarity=0.190 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.+.|+...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 456666666655532210 12245679999999999999999998888888754
No 280
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=70.95 E-value=31 Score=25.92 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=26.2
Q ss_pred HHHHHHHhCC-CCCHHHHHHHhCCCHHHHHHHHHh
Q 046578 234 NNVLSRRLRR-MPTDSEIAEMLNIHVSTVRLAIER 267 (379)
Q Consensus 234 ~~~l~~~lgr-~pt~~eia~~Lgis~~~~~~~l~~ 267 (379)
..-+...+.. .++.+++|+.+|++...+......
T Consensus 8 ~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 42 (103)
T 3lsg_A 8 QNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKK 42 (103)
T ss_dssp HHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3344455555 689999999999999999887654
No 281
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=70.85 E-value=8.9 Score=26.46 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=36.3
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
.+++.|..+|...|..+.+ ....-.+||..+|++...|..+...-+.+.|+
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 3567777777776643211 11235679999999999999999888777765
No 282
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=70.72 E-value=5.6 Score=35.59 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|+|+.+||+.+|||+++|+++++.
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 4599999999999999999999873
No 283
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=70.70 E-value=3.5 Score=31.23 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHH----HHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRER----IRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~----Vr~~~~r 360 (379)
.|+|++|+|+.+|+|+++ |+++.+-
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 459999999999999999 8777653
No 284
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=70.62 E-value=8.8 Score=26.38 Aligned_cols=50 Identities=14% Similarity=0.069 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
+++.|..+|...|.-+.. ....-.+||..+|+|...|..+...-+.+.|+
T Consensus 8 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 8 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 566777777766632211 12245689999999999999999888877765
No 285
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=70.59 E-value=2.4 Score=33.25 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++|+|+.+|+|+++|+++.+
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 459999999999999999999865
No 286
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=70.54 E-value=6.5 Score=29.26 Aligned_cols=55 Identities=15% Similarity=0.034 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHhhc---CC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhc
Q 046578 318 LSEREADILRLHFGL---DG-QTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372 (379)
Q Consensus 318 L~~rer~Vl~l~ygL---~g-~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~ 372 (379)
+++.+..+|.-.|.- +- .....-.+||..+|+|...|..+....+.|.++.+...
T Consensus 14 ~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 566666666654421 00 01234567999999999999999999999998876543
No 287
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=70.45 E-value=5.7 Score=35.64 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=32.4
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 316 QTLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
..|++.|+.....+.. ..|+|.++||+.+|+|+++|++.+.
T Consensus 116 ~~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3688888776655542 2569999999999999999988765
No 288
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=70.44 E-value=10 Score=36.09 Aligned_cols=180 Identities=10% Similarity=0.056 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHhhcCcccCCcchHHHHHH
Q 046578 150 YRSLVVSIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIANKSRTIRLPGSMAGMVAK 229 (379)
Q Consensus 150 y~~lV~~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i~~~lr~~~r~irip~~~~~~~~k 229 (379)
-...|..++.++. .-+-+.|....+++.+.....-+|.+..+.+..++.-++ |..
T Consensus 129 a~~~I~~~~~~L~-----Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiAC----R~~---------------- 183 (345)
T 4bbr_M 129 AFAKITMLCDAAE-----LPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGC----RRA---------------- 183 (345)
T ss_dssp HHHHHHHHHHHTT-----CCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHH----HHT----------------
T ss_pred HHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHH----Hhc----------------
Confidence 3446667777663 235677777778887776666677777777666665444 222
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCC------------ccccCCCCcccccCCCCCCCC
Q 046578 230 IAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDG------------AVTDRGCMTMQDIIPGPDETM 297 (379)
Q Consensus 230 i~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~~~~~iSLd~------------~~~~~~~~~l~d~i~~~~~~~ 297 (379)
+..-+..||++.++++..++........+.+.+.. +..+ ...+..-+...-..
T Consensus 184 ------------~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~--p~~~i~Rf~s~L~l- 248 (345)
T 4bbr_M 184 ------------EVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQ--NLTYIPRFCSHLGL- 248 (345)
T ss_dssp ------------CCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC-------------------------------------
T ss_pred ------------CCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCC--HHHHHHHHHHHcCC-
Confidence 22336677888888887777666554333333221 0000 00010000000000
Q ss_pred hHHHHHHHHHHHHHHHHHh-cC----CH--HHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 298 PERMVQKQLMKQELKELLQ-TL----SE--READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 298 pe~~~~~~e~~~~L~~~L~-~L----~~--rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+.+ +. ......+..+.. .+ +| ---.+|.+.--+.| ...|++|||+..|||..||++.++.-+..+-+.+.
T Consensus 249 ~~~-v~-~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g-~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~~ 325 (345)
T 4bbr_M 249 PMQ-VT-TSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQ-IPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVD 325 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHH-HH-HHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Confidence 000 00 000111111111 01 11 11222333322334 67999999999999999999998887777766654
Q ss_pred hc
Q 046578 371 LN 372 (379)
Q Consensus 371 ~~ 372 (379)
..
T Consensus 326 ~~ 327 (345)
T 4bbr_M 326 PQ 327 (345)
T ss_dssp --
T ss_pred HH
Confidence 43
No 289
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=70.40 E-value=2.8 Score=32.89 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|+|+.++|+.+|+|+++|+++.+-
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3499999999999999999998753
No 290
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=70.38 E-value=3.6 Score=32.73 Aligned_cols=25 Identities=8% Similarity=0.325 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|+|++++|+.+|||+++|+++.+-
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 4599999999999999999998763
No 291
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.25 E-value=13 Score=26.42 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
+++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.+.|+..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 556666666665532211 1224567999999999999999998888887753
No 292
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=69.78 E-value=19 Score=25.26 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
.+++.+..+|...|--+.. ......+||..+|+|...|..+...-+.+.|+..
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 3677788888877732211 1123567999999999999999999888888754
No 293
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=69.50 E-value=17 Score=26.60 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.+.|+...
T Consensus 25 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 25 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 566666777666532211 11235679999999999999999998888887643
No 294
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=69.45 E-value=2.7 Score=35.30 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=21.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+|..|+|+.|||++++|+++++.
T Consensus 32 LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHT
T ss_pred EcHHHHHHHhCCCHHHHHHHHHC
Confidence 89999999999999999998764
No 295
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=69.41 E-value=3.7 Score=31.70 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046578 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363 (379)
Q Consensus 322 er~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~ 363 (379)
++.-+.+.+ +. .+.|..|+|+.+|||.+.+.++...-.+
T Consensus 37 ~Kl~VV~~~-~~--g~~s~~e~arry~Is~s~i~~W~r~~~~ 75 (95)
T 2jrt_A 37 RKAAVVKAV-IH--GLITEREALDRYSLSEEEFALWRSAVAA 75 (95)
T ss_dssp HHHHHHHHH-HT--TSSCHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHH-Hc--CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 544444444 33 4589999999999999999998776433
No 296
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=69.37 E-value=14 Score=26.47 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHhhc-CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 317 TLSEREADILRLHFGL-DGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL-~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
.+++.|..+|...|-- +.+ ......+||..+|++...|..+...-+.+.|+..
T Consensus 7 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 3677788888877731 211 1123568999999999999999988888887764
No 297
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=69.36 E-value=3.2 Score=36.76 Aligned_cols=25 Identities=4% Similarity=0.080 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|++|+|+.+|+|+++|+++++.
T Consensus 29 ~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 29 LGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5689999999999999999998764
No 298
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=69.35 E-value=14 Score=26.20 Aligned_cols=53 Identities=21% Similarity=0.139 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.|..+|...|-.+.+ ....-.+||..+|+|...|..+...-+.+.|+...
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 9 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 566677777766643311 23456789999999999999999888888887643
No 299
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=69.21 E-value=17 Score=26.33 Aligned_cols=55 Identities=9% Similarity=0.082 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhhc
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNILN 372 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~~ 372 (379)
+++.|..+|...|-.+.+ ....-.+||..+|++...|..+...-+.+.|+.....
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 455666666665532211 1123567999999999999999998888888765543
No 300
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=68.73 E-value=7.6 Score=29.62 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHhhc---CC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHhh
Q 046578 317 TLSEREADILRLHFGL---DG-QTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNIL 371 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL---~g-~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~~ 371 (379)
-||+....||.-.|.- +. .....-.+||+.+|+|...|..+...+++|.++.+..
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 3677777777766531 00 0122345799999999999999999999999887643
No 301
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=68.60 E-value=4.1 Score=29.13 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=19.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.|+.+.|+.||||+++|++.++
T Consensus 14 ~s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 14 FGQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3899999999999999999863
No 302
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=68.50 E-value=20 Score=26.14 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.|.|+...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 14 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 567777777777632211 11235679999999999999999888888777643
No 303
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=68.28 E-value=11 Score=26.87 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
+++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.+.|+.-
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 566666666666532211 1224567999999999999999998888887653
No 304
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=68.00 E-value=8.2 Score=30.78 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
...|.+|||+.+|+|+.+|++++.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~ 48 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVS 48 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHH
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHH
Confidence 678999999999999999876643
No 305
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=67.76 E-value=12 Score=26.02 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
+++.|..+|...|-.+.+ ....-.+||..+|+|...|..+...-+.+.|+.
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 10 YTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 566677777766632211 122456799999999999999998888887764
No 306
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=67.72 E-value=8.6 Score=29.88 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|..+|.+-. .....-.|.++|.+.+ ..+..+|...+++.++||..
T Consensus 34 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 88 (110)
T 2pmu_A 34 SLSPTEFTLLRYFV-INAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 88 (110)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHH-HCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhcc
Confidence 48999999988765 3334779999999998 56778899888888888864
No 307
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=67.66 E-value=3.6 Score=33.31 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|+|++|+|+.+|+|+++++++.+-
T Consensus 15 ~gltq~elA~~~gis~~~is~iE~g 39 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLVHIENN 39 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5699999999999999999998764
No 308
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=67.60 E-value=4.7 Score=31.34 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|..+|.+.. ...+.-.|.++|.+.+ ..+..+|...+++-++||..
T Consensus 31 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 85 (110)
T 1opc_A 31 PLTSGEFAVLKALV-SHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEE 85 (110)
T ss_dssp CCCHHHHHHHHHHH-HSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhhc
Confidence 48999999988765 3434779999999998 56778888888888888864
No 309
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=67.60 E-value=28 Score=29.24 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=29.4
Q ss_pred HhcCCHHHHHHHHHHhhcC--C--------CCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 315 LQTLSEREADILRLHFGLD--G--------QTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 315 L~~L~~rer~Vl~l~ygL~--g--------~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
+...+..+|-.-.+..... | .-.+|.++||..+|+|+.+|++.++
T Consensus 114 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~ 168 (202)
T 2zcw_A 114 LATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIG 168 (202)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4456777775544432111 1 1237999999999999999976544
No 310
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=67.52 E-value=4.9 Score=33.54 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 319 ~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.|....||.+.. . .+++..|||+.+|+|+++|++.+..
T Consensus 57 ~p~R~~IL~~L~--~--~~~t~~eLa~~lgls~stvs~hL~~ 94 (151)
T 3f6v_A 57 EPTRRRLVQLLT--S--GEQTVNNLAAHFPASRSAISQHLRV 94 (151)
T ss_dssp SHHHHHHHHHGG--G--CCEEHHHHHTTSSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--h--CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 355566665443 2 5699999999999999999887544
No 311
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=67.46 E-value=3.3 Score=32.22 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|+.++|+.+|+|+++|+++..
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 459999999999999999999875
No 312
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=67.36 E-value=40 Score=25.81 Aligned_cols=38 Identities=11% Similarity=0.222 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 046578 230 IAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIER 267 (379)
Q Consensus 230 i~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~ 267 (379)
+.++..-+...+...++.+++|+.+|++...+......
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44444555566677789999999999999999987764
No 313
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=67.30 E-value=26 Score=26.93 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHh
Q 046578 245 PTDSEIAEMLNIHVSTVRLAIER 267 (379)
Q Consensus 245 pt~~eia~~Lgis~~~~~~~l~~ 267 (379)
-+..+||+.+|++..++...+..
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 47889999999999999887765
No 314
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=66.99 E-value=5.9 Score=37.45 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 320 ~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+..++||.+-. -.+.+..|-+|||+.||||+.+|++.++.
T Consensus 3 ~~~~~iL~~L~-~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~ 42 (323)
T 3rkx_A 3 KYSQDVLQLLY-KNKPNYISGQSIAESLNISRTAVKKVIDQ 42 (323)
T ss_dssp CHHHHHHHHHH-HHTTSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHH-hCCCCccCHHHHHHHHCCCHHHHHHHHHH
Confidence 44566666542 11125699999999999999999988765
No 315
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=66.81 E-value=4.6 Score=31.39 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=22.0
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 336 TPV-SCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 336 e~~-S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
+.+ |..|||+.||||+.+|+. |+++|.+
T Consensus 41 ~~lps~~eLa~~lgVSr~tVr~----al~~L~~ 69 (102)
T 2b0l_A 41 EGLLVASKIADRVGITRSVIVN----ALRKLES 69 (102)
T ss_dssp EEEECHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CcCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 445 999999999999999976 4555554
No 316
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=66.49 E-value=11 Score=26.76 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
+++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.+.|+..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 556666666666532211 1123567899999999999999998888887653
No 317
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=66.36 E-value=16 Score=25.83 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
.+++.+..+|...|-.+.+ ....-.+||..+|++...|..+...-+.+.|+...
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 3567777888877732211 11235678999999999999999888888877654
No 318
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=66.10 E-value=3.6 Score=32.19 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=22.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
+|..|+|+.+|||..|++.....++
T Consensus 2 ~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 7999999999999999999887654
No 319
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=65.75 E-value=32 Score=28.71 Aligned_cols=46 Identities=28% Similarity=0.146 Sum_probs=29.8
Q ss_pred HhcCCHHHHHHHHHHhhcC--CC--------CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 315 LQTLSEREADILRLHFGLD--GQ--------TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 315 L~~L~~rer~Vl~l~ygL~--g~--------e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+...+..+|-.-.+..... |. -.+|.++||..+|+|+.+|++.+++
T Consensus 107 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~ 162 (195)
T 3b02_A 107 LQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLAD 162 (195)
T ss_dssp HTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4466777776544432111 11 2479999999999999998765443
No 320
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=65.74 E-value=10 Score=35.54 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..++...|+.+.- . ....|.+|||+.||+|+.||++.+..-
T Consensus 3 ~~~r~~~Il~~L~--~-~~~~s~~eLa~~l~vS~~ti~r~l~~L 43 (321)
T 1bia_A 3 DNTVPLKLIALLA--N-GEFHSGEQLGETLGMSRAAINKHIQTL 43 (321)
T ss_dssp CCHHHHHHHHHHT--T-SSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH--c-CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3466667776542 2 256999999999999999999987753
No 321
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=65.57 E-value=3.4 Score=34.77 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 318 LSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
+++.+++++..... ..+.+..+||+.+|+|+.+|++.+.
T Consensus 140 ~~~~~~~~~~~~~~---~~~~~~~~ia~~l~is~~tv~~~l~ 178 (184)
T 3rqi_A 140 VDRLEWEHIQRVLA---ENNNNISATARALNMHRRTLQRKLA 178 (184)
T ss_dssp ---CHHHHHHHHHH---HTTSCHHHHHHHHTSCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---hccccHHHHHHHcCCcHHHHHHHHH
Confidence 34445555554432 1468999999999999999987653
No 322
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=65.43 E-value=11 Score=28.66 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|..+|.+-. ...++-.|.++|.+.+ ..+..+|...+++-++||..
T Consensus 28 ~Lt~~e~~lL~~L~-~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~ 82 (102)
T 3zq7_A 28 HLTPIEFRLLAVLL-NNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQ 82 (102)
T ss_dssp CCCHHHHHHHHHHH-HTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHCS
T ss_pred EcCHHHHHHHHHHH-HCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhhc
Confidence 48999999888655 3333678999999887 45667888887777777765
No 323
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=65.22 E-value=24 Score=26.77 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
.+++.|..+|...|--+.+ ....-.+||..+|++...|..+...-+.|.|+...
T Consensus 40 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 40 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 4788888888877732211 11235689999999999999999888888887643
No 324
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=64.80 E-value=8.1 Score=33.61 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 320 EREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 320 ~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
+|++.|+.+.-- ..-.|..|+|+.||+|..|||+=+.
T Consensus 12 eR~~~i~~~l~~---~~~~~~~~la~~~~vs~~TiRrDl~ 48 (190)
T 4a0z_A 12 KRREAIRQQIDS---NPFITDHELSDLFQVSIQTIRLDRT 48 (190)
T ss_dssp HHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHH---CCCEeHHHHHHHHCCCHHHHHHHHH
Confidence 455566655431 2347999999999999999987644
No 325
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=64.73 E-value=4.5 Score=29.37 Aligned_cols=23 Identities=9% Similarity=0.378 Sum_probs=21.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
+|.+|.|+-|||++++++++...
T Consensus 17 LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 17 LTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eCHHHHHHHHCcCHHHHHHHHHc
Confidence 89999999999999999988754
No 326
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=64.48 E-value=5.6 Score=28.62 Aligned_cols=50 Identities=12% Similarity=0.097 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHhhcCC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 319 SEREADILRLHFGLDG-QTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 319 ~~rer~Vl~l~ygL~g-~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
+..|..+|.-.|..+- .......+||..+|+|+..|+.+...-+.++|+-
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 3445555555543221 1335567899999999999999999998888864
No 327
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=64.47 E-value=8.1 Score=31.67 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.+.|..+||+.+|+|+++|++.+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 4589999999999999999876554
No 328
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.46 E-value=16 Score=26.60 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.+.|+...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 566666777666632211 11235679999999999999999888888887644
No 329
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=64.43 E-value=19 Score=25.71 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHhhc-CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGL-DGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL-~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.|..+|...|-. +.+ ......+||..+|++...|..+...-+.+.|+.-.
T Consensus 9 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 9 PTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 567777777777631 211 11235689999999999999999888888877643
No 330
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=64.26 E-value=9.3 Score=26.27 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTK 364 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~k 364 (379)
.+++.+..+|...|..+.+ ....-.+||..+|+|...|..+....+.+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 4677888888877643211 11235678999999999999998776655
No 331
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=64.08 E-value=34 Score=28.69 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
.+|.++||..+|+|+.+|++. +++|++
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~----l~~L~~ 193 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRI----LKMLED 193 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHHHH----HHHHHH
Confidence 479999999999999998755 555554
No 332
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=63.92 E-value=18 Score=27.35 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
..+..+||+.+|+|+.++.+...+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7999999999999999999888776
No 333
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=63.91 E-value=11 Score=36.82 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=38.2
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 308 KQELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 308 ~~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
...+...+. .|++.|-.||...+. ....++|..|||+.++++.++|.+++.|
T Consensus 390 ~~~~~~~~~~~~lt~~q~~vl~~l~~-~~~~~~~~~~l~~~~~~~~~~~t~~~~~ 443 (487)
T 1hsj_A 390 KKFFRDTKKKFNLNYEEIYILNHILR-SESNEISSKEIAKCSEFKPYYLTKALQK 443 (487)
T ss_dssp HHHHHHHSSSCCCCHHHHHHHHHHHT-CSCSEEEHHHHHHSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 334445554 589999988887663 1115699999999999999999877655
No 334
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=63.60 E-value=7.2 Score=30.18 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 321 READILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 321 rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
-|+.+|...+-- .+-+..+.|+.||||+.++++.+.
T Consensus 58 ~Er~~I~~aL~~---~~gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 58 VEQPLLDMVMQY---TLGNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp HHHHHHHHHHHH---TTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCHHHHHHHhCCCHHHHHHHHH
Confidence 355555443311 235788999999999999976544
No 335
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=63.50 E-value=7.8 Score=31.47 Aligned_cols=25 Identities=28% Similarity=0.141 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 21 G~~~~t~~~Ia~~agvs~~t~Y~~F 45 (170)
T 3egq_A 21 PPHEVSIEEIAREAKVSKSLIFYHF 45 (170)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred CCccCcHHHHHHHhCCCchhHHHHc
Confidence 5677999999999999999999864
No 336
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.27 E-value=18 Score=26.36 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
+++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.|.|+..
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 455555555555432110 1123567899999999999999988888877653
No 337
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=63.16 E-value=19 Score=24.14 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKL 365 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kL 365 (379)
.+++.+..+|...|-.+.. ......+||..+|++...|..+...-+.+.
T Consensus 8 ~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 3567777788777632211 123456789999999999999988766554
No 338
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=63.04 E-value=5.9 Score=32.96 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||+++++...
T Consensus 20 G~~~~s~~~IA~~agvsk~t~Y~~F 44 (190)
T 3vpr_A 20 GYEATSVQDLAQALGLSKAALYHHF 44 (190)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHc
Confidence 3577999999999999999998865
No 339
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.79 E-value=12 Score=27.15 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
+++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.+.|+..
T Consensus 15 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 15 KSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 455566666655532211 2235678999999999999999998888877653
No 340
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=62.78 E-value=9 Score=27.93 Aligned_cols=29 Identities=7% Similarity=0.080 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 340 CKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 340 ~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
..+||..+|++...|..+...-+.+.|+.
T Consensus 47 r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 47 LDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 46789999999999999999988888875
No 341
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=62.72 E-value=11 Score=27.95 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHhhc---CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGL---DGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL---~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.+..+|...|.- +.+ ....-.+||..+|++...|..+....+.+.|+...
T Consensus 9 ft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 9 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp CCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 677888888877742 211 11234579999999999999999999998887643
No 342
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=62.48 E-value=22 Score=27.54 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
-++|+.+||+.||...+||.....+.-+.+++
T Consensus 49 t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 49 TDLSLPKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 35999999999999999998877766665554
No 343
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=62.46 E-value=15 Score=25.87 Aligned_cols=53 Identities=9% Similarity=0.113 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.+..+|...|..+.+ ....-.+||..+|+|...|..+...-+.+.|+...
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 566677777766643211 11235689999999999999999888888877543
No 344
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=62.27 E-value=6 Score=33.52 Aligned_cols=27 Identities=33% Similarity=0.652 Sum_probs=21.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
.+|.++||..+|+|+.+|++. +++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~----l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRV----LKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHH----HHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHH----HHHHHH
Confidence 479999999999999998765 445554
No 345
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=62.21 E-value=54 Score=25.73 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 046578 230 IAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIER 267 (379)
Q Consensus 230 i~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~ 267 (379)
+.++..-+...+....+.+++|+.+|++...+......
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44445555666677789999999999999999887654
No 346
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=62.11 E-value=27 Score=25.24 Aligned_cols=53 Identities=19% Similarity=0.177 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.|..+|...|-.+.+ ....-.+||..+|++...|..+...-+.+.|+...
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 444555555554422110 11235679999999999999999888888877654
No 347
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=61.91 E-value=8 Score=31.29 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=22.1
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 336 TPV-SCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 336 e~~-S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
+.+ |..++|+.||||+.+|+. |++.|..
T Consensus 26 ~~LPse~~La~~~gvSr~tVr~----Al~~L~~ 54 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARN----GLTLLVE 54 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHH----HHHHHHT
T ss_pred CcCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 455 899999999999999975 5555543
No 348
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=61.74 E-value=6 Score=32.94 Aligned_cols=24 Identities=4% Similarity=0.117 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 25 ~~~~t~~~IA~~agvs~~tlY~~F 48 (192)
T 2zcm_A 25 YDGTTLDDISKSVNIKKASLYYHY 48 (192)
T ss_dssp TTTCCHHHHHHHTTCCHHHHHHHT
T ss_pred cccCCHHHHHHHhCCChHHHHHHC
Confidence 567999999999999999999754
No 349
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=61.49 E-value=8.6 Score=30.06 Aligned_cols=49 Identities=16% Similarity=0.117 Sum_probs=37.5
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQ 366 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR 366 (379)
.|+++|..+|.+-. ...+...|.++|.+.+ ..+..+|...+++.++||.
T Consensus 28 ~Lt~~E~~lL~~L~-~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 28 HLTGKEYVLLELLL-QRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CCCHHHHHHHHHHH-HTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTT
T ss_pred ecCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhc
Confidence 48999999988765 3434789999999998 4667788887777766664
No 350
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=61.14 E-value=9.3 Score=33.60 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.+.+..+||+.||+|+++|++.+.+-
T Consensus 19 ~~~~~~~lA~~l~vs~~tvs~~l~~L 44 (214)
T 3hrs_A 19 NKITNKEIAQLMQVSPPAVTEMMKKL 44 (214)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHH
Confidence 57999999999999999998876653
No 351
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=60.99 E-value=6.7 Score=30.81 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=21.5
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 336 TPV-SCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 336 e~~-S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
+.+ |..++|+.||||+.+|+. |++.|..
T Consensus 31 ~~lPs~~~La~~~~vSr~tvr~----al~~L~~ 59 (113)
T 3tqn_A 31 EMIPSIRKISTEYQINPLTVSK----AYQSLLD 59 (113)
T ss_dssp CEECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 445 899999999999999965 4555543
No 352
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=60.96 E-value=39 Score=28.88 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=29.9
Q ss_pred HhcCCHHHHHHHHH-----Hhhc-----CCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 315 LQTLSEREADILRL-----HFGL-----DGQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 315 L~~L~~rer~Vl~l-----~ygL-----~g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
+...+..+|-.-.+ .++- .-.-.+|.++||..+|+|+.+|++.++
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~ 202 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLS 202 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHH
Confidence 44567777765444 2321 001358999999999999999876543
No 353
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=60.86 E-value=7.8 Score=33.14 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
.+|.++||..+|+|+.+|++. +++|++
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~----l~~L~~ 195 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRM----LRYFQV 195 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHH----HHHHHH
Confidence 589999999999999998765 455554
No 354
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=60.71 E-value=43 Score=28.48 Aligned_cols=26 Identities=46% Similarity=0.598 Sum_probs=21.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 338 VSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
+|.++||..+|+|+.+|++. +++|++
T Consensus 188 lt~~~lA~~lg~sr~tvsR~----l~~L~~ 213 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRV----LKKLQA 213 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHH----HHHHHH
Confidence 79999999999999999755 555554
No 355
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=60.54 E-value=13 Score=28.44 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
++.|..+||+.+|+|+.++++..++.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 66999999999999999999988775
No 356
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=60.49 E-value=6.5 Score=32.89 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
|.++.|.++||+..|||++|+++...
T Consensus 29 G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 29 GFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred CcccccHHHHHHHcCCCHHHHHHHCC
Confidence 35779999999999999999998753
No 357
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=60.24 E-value=6.8 Score=32.12 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 25 G~~~~ti~~Ia~~agvs~~t~Y~~F 49 (188)
T 3qkx_A 25 GLNQLSMLKLAKEANVAAGTIYLYF 49 (188)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred CcccCCHHHHHHHhCCCcchHHHHc
Confidence 4577999999999999999998753
No 358
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.22 E-value=17 Score=25.83 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
+++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.+.|+.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 14 YSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 566677777766632210 112356899999999999999998877776654
No 359
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=60.18 E-value=7.1 Score=33.80 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=21.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
.+|.++||..+|+|+.+|++. +++|++
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~----l~~L~~ 201 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRV----LKRLEA 201 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHH----HHHHHH
Confidence 479999999999999998765 455554
No 360
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=60.13 E-value=1.8 Score=36.15 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|++|||+.+|+|+++|+++..
T Consensus 13 ~gltq~elA~~lgis~~~vs~~e~ 36 (158)
T 2p5t_A 13 HDLTQLEFARIVGISRNSLSRYEN 36 (158)
T ss_dssp ------------------------
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 669999999999999999999864
No 361
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=60.08 E-value=6.9 Score=31.35 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=19.0
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHH
Q 046578 336 TPV-SCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 336 e~~-S~~EIAe~LgiS~~~Vr~~~ 358 (379)
+.+ |..++|+.||||+.+|+..+
T Consensus 35 ~~Lps~~~La~~~~vSr~tvr~Al 58 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVSRAY 58 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHH
Confidence 445 69999999999999997543
No 362
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=60.08 E-value=15 Score=28.12 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
+..|..+||+.+|+|+.++.+..++.
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67999999999999999999888776
No 363
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=60.06 E-value=6.9 Score=32.26 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 19 Gy~~~s~~~Ia~~agvskgtlY~~F 43 (179)
T 2eh3_A 19 GYQGTSVEEIVKRANLSKGAFYFHF 43 (179)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCccCCHHHHHHHhCCCcHHHHHHc
Confidence 4577999999999999999998764
No 364
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=59.99 E-value=15 Score=29.34 Aligned_cols=27 Identities=11% Similarity=0.017 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
+|+|..|||..-|++.+||..++.+..
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v 57 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIV 57 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 789999999999999999988877664
No 365
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=59.93 E-value=6.7 Score=32.42 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 19 G~~~~ti~~Ia~~agvs~~t~Y~~F 43 (194)
T 3bqz_B 19 GYNATTTGEIVKLSESSKGNLYYHF 43 (194)
T ss_dssp TTTTCCHHHHHHHTTCCHHHHHHHT
T ss_pred CCccCCHHHHHHHhCCCchhHHHhC
Confidence 3577999999999999999998764
No 366
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=59.93 E-value=8.1 Score=33.30 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.+|.++||..+|+|+.+|++.++
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~ 185 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALN 185 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHHH
Confidence 37999999999999999876543
No 367
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=59.80 E-value=7.2 Score=33.55 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
-..|.++||..+|+|+.+|++. +++|++.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~----l~~l~~~ 205 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRI----MHRLGDE 205 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHH----HHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHH----HHHHHHC
Confidence 3579999999999999999765 4555543
No 368
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=59.72 E-value=16 Score=27.17 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHhhc---CCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGL---DGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQ 366 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL---~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR 366 (379)
.+++.+..+|...|.- ..+ ....-.+||..+|++...|..+....+.|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4677777777776642 110 1123457899999999999999988887765
No 369
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=59.67 E-value=3.3 Score=31.78 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=19.4
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHH
Q 046578 336 TPV-SCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 336 e~~-S~~EIAe~LgiS~~~Vr~~~ 358 (379)
+.+ |..|||+.||+|+.+|++.+
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al 56 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRAL 56 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHH
Confidence 445 99999999999999997643
No 370
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=59.66 E-value=19 Score=24.74 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
.+++.+..+|...|.-+.+ ....-.+||..+|++...|..+...-+.+.|+
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 3567777777776642211 11235689999999999999998877666554
No 371
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=59.32 E-value=8.5 Score=33.05 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=19.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.+|.++||..+|+|+.+|++.++
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~ 189 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLN 189 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHHH
Confidence 58999999999999999976543
No 372
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=59.30 E-value=7.4 Score=31.29 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=21.5
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHH
Q 046578 336 TPV-SCKEIGRLLSLSRERIRQIRGIALTKLQ 366 (379)
Q Consensus 336 e~~-S~~EIAe~LgiS~~~Vr~~~~rAl~kLR 366 (379)
+.+ |..++|+.+|||+.+|+. |++.|.
T Consensus 33 ~~lPse~~La~~~~vSr~tvr~----Al~~L~ 60 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAK----AYKELE 60 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHHH----HHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 455 999999999999999976 455554
No 373
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=59.26 E-value=11 Score=32.90 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 319 SEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 319 ~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
++....|+.+-. ..+++..|||+.+|+|.++|++++.+
T Consensus 14 ~~~rl~IL~~L~----~~~~s~~eLa~~l~is~stvs~hLk~ 51 (202)
T 2p4w_A 14 NETRRRILFLLT----KRPYFVSELSRELGVGQKAVLEHLRI 51 (202)
T ss_dssp SHHHHHHHHHHH----HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455666665543 25699999999999999999887554
No 374
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=59.19 E-value=7.2 Score=31.55 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=21.7
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 336 TPV-SCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 336 e~~-S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
+.+ |.+++|+.||||+.+|+. |++.|..
T Consensus 36 ~~LPser~La~~~gVSr~tVRe----Al~~L~~ 64 (134)
T 4ham_A 36 EKILSIREFASRIGVNPNTVSK----AYQELER 64 (134)
T ss_dssp CEECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCccHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 445 889999999999999975 4555543
No 375
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=59.19 E-value=8.2 Score=32.88 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
-.+|.++||..+|+|+.+|++. +++|++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~----l~~l~~ 189 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRV----LHALAE 189 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHH----HHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHH----HHHHHH
Confidence 3579999999999999998755 455554
No 376
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=59.11 E-value=8.8 Score=27.35 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
+++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.+.|+..
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 456666666666532211 1123567999999999999999988887777643
No 377
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=58.83 E-value=7.1 Score=31.42 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhC-----CCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLS-----LSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~Lg-----iS~~~Vr~~~~ 359 (379)
.++|++|+|+.+| +|++.++++.+
T Consensus 23 ~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 23 GPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp CSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 5799999999998 99999999975
No 378
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=58.70 E-value=61 Score=25.03 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 234 NNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIE 266 (379)
Q Consensus 234 ~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~ 266 (379)
..-+...+....+.+++|+.+|++...+.....
T Consensus 13 ~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk 45 (120)
T 3mkl_A 13 CTVINNNIAHEWTLARIASELLMSPSLLKKKLR 45 (120)
T ss_dssp HHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 334444556678999999999999998887654
No 379
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=58.68 E-value=16 Score=26.82 Aligned_cols=53 Identities=21% Similarity=0.123 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
.+++.+..+|...|-.+.. ....-.+||..+|++...|..+...-+.|.|+..
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4677777777766632211 1123567999999999999999988888887753
No 380
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=58.50 E-value=6.4 Score=28.71 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=20.3
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 046578 339 SCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 339 S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
|+.++|+.+|||+++|+++.+.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999998763
No 381
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=58.39 E-value=10 Score=33.94 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
.++|..|||+.+|++++||++++..-
T Consensus 20 ~~~s~~ela~~~gl~~stv~r~l~~L 45 (241)
T 2xrn_A 20 HGLSLAAIAQLVGLPRSTVQRIINAL 45 (241)
T ss_dssp TCEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46999999999999999999988764
No 382
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=58.23 E-value=37 Score=25.14 Aligned_cols=52 Identities=19% Similarity=0.140 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.+++.|..+|...|-.+.+ ....-.+||..+|++...|..+...-+.+.|+.
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 4677888888877732211 112356899999999999999998888887764
No 383
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=58.08 E-value=9 Score=33.01 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.+|.++||..+|+|+.+|++.+++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~ 200 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALAD 200 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHH
Confidence 489999999999999998765443
No 384
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=58.07 E-value=4.8 Score=31.50 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=22.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHH
Q 046578 338 VSCKEIGRLLSLSRERIRQIRGIAL 362 (379)
Q Consensus 338 ~S~~EIAe~LgiS~~~Vr~~~~rAl 362 (379)
+|..|+|+.+|||..|++.+...++
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCCC
Confidence 7899999999999999999876543
No 385
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=57.90 E-value=6.3 Score=33.62 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|++++|+.+|+|+++|+++.+-
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4599999999999999999998763
No 386
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=57.85 E-value=8.4 Score=31.60 Aligned_cols=26 Identities=4% Similarity=-0.017 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCC-CHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSL-SRERIRQIRGIA 361 (379)
Q Consensus 336 e~~S~~EIAe~Lgi-S~~~Vr~~~~rA 361 (379)
.|+|+.+|+...|| |++||++++.+-
T Consensus 27 ~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 27 SGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp TTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 67999999999999 899999998774
No 387
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=57.68 E-value=8.2 Score=34.03 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
.+|.++||..+|+|+.+|++. +++|++
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~----l~~L~~ 203 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRV----LASLKR 203 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHH----HHHHHH
Confidence 579999999999999999765 455554
No 388
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=57.68 E-value=23 Score=27.22 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=31.6
Q ss_pred hcCCHHHHHHHH-HHhhc----CCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 316 QTLSEREADILR-LHFGL----DGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 316 ~~L~~rer~Vl~-l~ygL----~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
..|++.+-.|+. |.. . .| ...++.+||+.++++++++++.+.+
T Consensus 12 ~gl~~~q~~vL~~L~~-~~~~~~g-~~~s~~eLa~~l~l~~stLsR~l~r 59 (96)
T 2obp_A 12 DGIDPAIVEVLLVLRE-AGIENGA-TPWSLPKIAKRAQLPMSVLRRVLTQ 59 (96)
T ss_dssp -CCCHHHHHHHHHHHH-HTSSTTC-CCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH-HHhhCCC-CCcCHHHHHHHhCCchhhHHHHHHH
Confidence 357777777777 433 2 22 4589999999999999999877655
No 389
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=57.67 E-value=6.6 Score=33.60 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|++|+|+.+|+|+++++++.+-
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4599999999999999999998763
No 390
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=57.62 E-value=14 Score=30.30 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.+.++.||++.+|+|.+++++++.+
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~ 60 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRN 60 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4599999999999999999877554
No 391
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=57.58 E-value=12 Score=33.51 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|..|||+.+|+++++|++++..
T Consensus 22 ~~~~~~ela~~~gl~~stv~r~l~~ 46 (249)
T 1mkm_A 22 GDVSVSEIAEKFNMSVSNAYKYMVV 46 (249)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4699999999999999999887664
No 392
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=57.56 E-value=90 Score=27.58 Aligned_cols=87 Identities=10% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhcCCccccCCccccCCCCcccccCCCCCCCChHHHHHHHHHH
Q 046578 229 KIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIERTRHPISLDGAVTDRGCMTMQDIIPGPDETMPERMVQKQLMK 308 (379)
Q Consensus 229 ki~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~~~~~iSLd~~~~~~~~~~l~d~i~~~~~~~pe~~~~~~e~~ 308 (379)
.+.++..-+.+......+.+++|+.+|+++..+...... .+. +|.+.+
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~-~G~-------------------------t~~~~l------ 217 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELES-RGV-------------------------KFRELI------ 217 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHT-TTC-------------------------CHHHHH------
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHHH-cCC-------------------------CHHHHH------
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCC-CHHHHHHHHHH
Q 046578 309 QELKELLQTLSEREADILRLHFGLDGQTPVSCKEIGRLLSL-SRERIRQIRGI 360 (379)
Q Consensus 309 ~~L~~~L~~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~Lgi-S~~~Vr~~~~r 360 (379)
.++.+-..+..|.. .++|..|||..+|. +.+.-.+..++
T Consensus 218 ------------~~~Rl~~A~~lL~~-~~~si~eIA~~~Gf~~~s~F~r~Fkk 257 (276)
T 3gbg_A 218 ------------NSIRISYSISLMKT-GEFKIKQIAYQSGFASVSYFSTVFKS 257 (276)
T ss_dssp ------------HHHHHHHHHHHHHH-TCCCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHhC-CCCCHHHHHHHhCCCCHHHHHHHHHH
No 393
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=57.56 E-value=12 Score=26.19 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
+++.|..+|...|--+.. ....-.+||..+|+|...|..+...-+.+.|+.
T Consensus 10 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 566677777766632211 112356789999999999999998887776653
No 394
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=57.41 E-value=17 Score=29.85 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHhhcC--CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLD--GQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~--g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
+|+.+-...++.-..|. +....|.+|||+.+|+|+..|++++.
T Consensus 8 ~ls~~~~yAl~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~ 52 (149)
T 1ylf_A 8 KISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMS 52 (149)
T ss_dssp CCCHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 56655443333222122 22568999999999999988876643
No 395
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=57.39 E-value=8.3 Score=32.62 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
|.++.|.++||+..|||++++++...
T Consensus 25 G~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 25 GIAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp TTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 35679999999999999999998653
No 396
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=57.34 E-value=7.7 Score=29.93 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLL-SLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~L-giS~~~Vr~~~~r 360 (379)
.++++.||++.+ |++.++|++++.+
T Consensus 37 ~~~~~~eL~~~l~gis~~~ls~~L~~ 62 (107)
T 2fsw_A 37 RIIRYGELKRAIPGISEKMLIDELKF 62 (107)
T ss_dssp SCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHcccCCHHHHHHHHHH
Confidence 569999999999 5999999877554
No 397
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=57.34 E-value=5.5 Score=29.30 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.+|..|+|+.+|||..|++....+
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh
Confidence 379999999999999999998776
No 398
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=57.30 E-value=18 Score=25.88 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
+++.+..+|...|-.+.+ ......+||..+|++...|..+...-+.+.|+..
T Consensus 16 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 16 FTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 455555566555432211 1234567899999999999999999888887653
No 399
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=57.25 E-value=12 Score=30.25 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLL-SLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~L-giS~~~Vr~~~~r 360 (379)
.++++.||++.+ |++.+++++++.+
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~ 72 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQA 72 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 469999999999 7999999887654
No 400
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=57.19 E-value=6.7 Score=34.12 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.+|.++||..+|+|+.+|++. +++|++.
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~----l~~L~~~ 205 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRA----FSRLKAA 205 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHH----HHHHGGG
T ss_pred cCCHHHHHHHhCCCHHHHHHH----HHHHHHC
Confidence 478999999999999998755 5555543
No 401
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=57.14 E-value=8 Score=32.43 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 31 G~~~~ti~~IA~~agvs~~t~Y~~F 55 (212)
T 3knw_A 31 GFVGVGLQEILKTSGVPKGSFYHYF 55 (212)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCccCCHHHHHHHhCCChHHHHHHC
Confidence 3567999999999999999999754
No 402
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=57.08 E-value=14 Score=26.54 Aligned_cols=53 Identities=6% Similarity=0.061 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.|..+|...|-.+.. ......+||..+|++...|..+...-+.+.|+.-.
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 455556666555432211 12345678999999999999999988888877543
No 403
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=56.94 E-value=8.6 Score=33.83 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
.+|.++||..+|+|+.+|++. +++|++
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~----l~~L~~ 219 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRL----LGDLRE 219 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred cCCHHHHHHHHCCcHHHHHHH----HHHHHH
Confidence 579999999999999999765 455554
No 404
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=56.82 E-value=8.1 Score=32.19 Aligned_cols=24 Identities=13% Similarity=0.002 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 30 ~~~~t~~~Ia~~agvs~~t~Y~~F 53 (202)
T 3lwj_A 30 YYNTSIRDIIALSEVGTGTFYNYF 53 (202)
T ss_dssp TTTCCHHHHHHHHCSCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCchhHHHHc
Confidence 567999999999999999999854
No 405
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=56.62 E-value=7.7 Score=31.70 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhC-----CCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLS-----LSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~Lg-----iS~~~Vr~~~~ 359 (379)
.++|++|+|+.+| +|.+.++++.+
T Consensus 25 ~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 25 GPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp CCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 5799999999999 99999999975
No 406
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=56.62 E-value=19 Score=31.50 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++|+.++|+.+|+|.++|++++.
T Consensus 42 ~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 42 HNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCChHHHHHHHh
Confidence 569999999999999999999975
No 407
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=56.58 E-value=19 Score=26.40 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
+++.|..+|...|..+.+ ....-.+||..+|++...|..+...-+.|.|+.
T Consensus 29 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 29 FSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 555666666655532211 112356799999999999999998877776654
No 408
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=56.56 E-value=8.1 Score=32.82 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
|.++.|.++||+..|||++++++...
T Consensus 28 G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2wui_A 28 GVGTTAMADLADAAGVSRGAVYGHYK 53 (210)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred CccccCHHHHHHHhCCCHHHHHHHcC
Confidence 46779999999999999999998653
No 409
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=56.51 E-value=15 Score=33.10 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|..|||+.+|++++||.++++.
T Consensus 28 ~~~~~~eia~~~gl~~stv~r~l~~ 52 (257)
T 2g7u_A 28 PNPTLAELATEAGLSRPAVRRILLT 52 (257)
T ss_dssp SSCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999999999999887654
No 410
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.48 E-value=20 Score=26.84 Aligned_cols=51 Identities=16% Similarity=0.035 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.++.|..+|...|-.+.+ ......+||..+|++...|..+...-+.|.|+.
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 566666666666532211 123456899999999999999998887777654
No 411
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=56.28 E-value=9.1 Score=32.05 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++.|.++||+..|||++++++...
T Consensus 34 ~~~~t~~~Ia~~agvs~~t~Y~~F~ 58 (213)
T 2qtq_A 34 VVDISLSELSLRSGLNSALVKYYFG 58 (213)
T ss_dssp SSCCCHHHHHHHHCCCHHHHHHHHS
T ss_pred cccccHHHHHHHhCCChhhHhHhcC
Confidence 4679999999999999999998653
No 412
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=56.13 E-value=8.6 Score=32.20 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.4
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQI 357 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~ 357 (379)
|.++.|.++||+..|||++++.+.
T Consensus 29 G~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 29 SFHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccccHHHHHHHhCCChHHHHHH
Confidence 457799999999999999999874
No 413
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=56.04 E-value=8.6 Score=31.94 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 34 G~~~~s~~~Ia~~agvs~~t~Y~~F 58 (206)
T 3kz9_A 34 GIGRGGHADIAEIAQVSVATVFNYF 58 (206)
T ss_dssp CCSSCCHHHHHHHHTSCHHHHHHHC
T ss_pred CcccccHHHHHHHhCCCHHHHHHHc
Confidence 4577999999999999999998764
No 414
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=55.94 E-value=8.6 Score=32.22 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||+++++...
T Consensus 27 G~~~~s~~~IA~~aGvs~gtlY~yF 51 (194)
T 2nx4_A 27 GIEAANMRDIATEAGYTNGALSHYF 51 (194)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CcccCCHHHHHHHhCCCcchHHHhC
Confidence 4577999999999999999998764
No 415
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=55.92 E-value=8.7 Score=31.81 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 25 G~~~~t~~~IA~~Agvs~~tly~~F 49 (194)
T 3dpj_A 25 GFAQTSFVDISAAVGISRGNFYYHF 49 (194)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CcccCCHHHHHHHHCCChHHHHHHc
Confidence 3567999999999999999998864
No 416
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=55.91 E-value=8.9 Score=31.51 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 26 G~~~~tv~~Ia~~agvs~~t~Y~~F 50 (195)
T 3ppb_A 26 GFHGTSTATIAREAGVATGTLFHHF 50 (195)
T ss_dssp CSTTSCHHHHHHHHTCCHHHHHHHC
T ss_pred CcccCCHHHHHHHhCCChhHHHHHc
Confidence 4577999999999999999999753
No 417
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=55.79 E-value=7.2 Score=32.36 Aligned_cols=25 Identities=24% Similarity=0.108 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++.|.++||+..|||++++++...
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (206)
T 3dew_A 26 FYGVSIRELAQAAGASISMISYHFG 50 (206)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHSC
T ss_pred cccCcHHHHHHHhCCCHHHHHHHcC
Confidence 4679999999999999999998653
No 418
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=55.57 E-value=8.6 Score=31.91 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||+++++++.
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~F 55 (203)
T 3f1b_A 32 FHETSMDAIAAKAEISKPMLYLYY 55 (203)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHC
T ss_pred cccccHHHHHHHhCCchHHHHHHh
Confidence 467999999999999999999863
No 419
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=55.49 E-value=8.6 Score=32.51 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 27 G~~~~s~~~IA~~aGvs~~t~Y~~F 51 (210)
T 3vib_A 27 GIARTSLNEIAQAAGVTRDALYWHF 51 (210)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred CcccCCHHHHHHHHCcCHHHHHHHC
Confidence 3577999999999999999999853
No 420
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=55.21 E-value=10 Score=33.00 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=21.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
.+|.++||..+|+|+.+|++. +++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~----l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKT----LNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHH----HHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHH----HHHHHH
Confidence 479999999999999998655 455543
No 421
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=55.20 E-value=7.6 Score=31.93 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~F 49 (194)
T 2g7s_A 26 YNSFSYADISQVVGIRNASIHHHF 49 (194)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCchHHHHHc
Confidence 467999999999999999998763
No 422
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=55.12 E-value=4.3 Score=34.20 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
..+|.++||..+|+|+.+|++.+++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 4589999999999999999887665
No 423
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=55.11 E-value=7.6 Score=31.91 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
..+.|.++||+..|||++++++..
T Consensus 28 ~~~~t~~~IA~~agvs~~t~Y~~F 51 (191)
T 3on4_A 28 YNAFSFKDIATAINIKTASIHYHF 51 (191)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCcchhhhcC
Confidence 466999999999999999998764
No 424
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=55.02 E-value=9.6 Score=32.28 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 29 G~~~ts~~~IA~~aGvsk~tlY~~F 53 (211)
T 3bhq_A 29 GYDGTSMEEIATKAGASKQTVYKHF 53 (211)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHc
Confidence 3567999999999999999998765
No 425
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=54.99 E-value=5.8 Score=32.69 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHHh-hcCCCCCCCHHHHHH----Hh--CCCHHHHHHHHHHH
Q 046578 317 TLSEREADILRLHF-GLDGQTPVSCKEIGR----LL--SLSRERIRQIRGIA 361 (379)
Q Consensus 317 ~L~~rer~Vl~l~y-gL~g~e~~S~~EIAe----~L--giS~~~Vr~~~~rA 361 (379)
.|+..|+.-|..++ -- ..++|..+||+ .+ |++++||+.+++.-
T Consensus 11 ~lT~~qK~~i~~~~~~~--~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQL--QNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSHHHHHHHHHHHSS--SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 46777777776665 21 25699999999 99 99999999998763
No 426
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=54.99 E-value=16 Score=26.27 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.|..+|...|..+.+ ....-.+||..+|++...|..+...-+.+.|+...
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 14 YTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 455666666655532211 12235679999999999999999998888887643
No 427
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=54.80 E-value=24 Score=29.59 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=31.8
Q ss_pred hcCCHHHHHHHHHHhhcC---CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 316 QTLSEREADILRLHFGLD---GQTPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 316 ~~L~~rer~Vl~l~ygL~---g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.+|+.+.+..|+.-..|. +....|.+|||+.+|+|+..|++++ .+|++.
T Consensus 20 M~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil----~~L~~a 71 (159)
T 3lwf_A 20 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLI----GPLRNA 71 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHH----HHHHHT
T ss_pred eeCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHH----HHHHHC
Confidence 356666555554332232 3356899999999999988887664 455543
No 428
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=54.77 E-value=9 Score=32.27 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||+++++...
T Consensus 31 G~~~~s~~~IA~~agvs~~tlY~~F 55 (204)
T 2ibd_A 31 GLRATTVRDIADAAGILSGSLYHHF 55 (204)
T ss_dssp CSTTCCHHHHHHHTTSCHHHHHHHC
T ss_pred CchhcCHHHHHHHhCCCchhHHHhc
Confidence 3577999999999999999998764
No 429
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=54.75 E-value=14 Score=33.41 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|..|||+.+|+++++|++++..
T Consensus 37 ~~~~~~eia~~~gl~kstv~r~l~t 61 (260)
T 2o0y_A 37 PTRSLKELVEGTKLPKTTVVRLVAT 61 (260)
T ss_dssp SSBCHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999999999999887653
No 430
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=54.62 E-value=9.1 Score=32.17 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 26 G~~~~t~~~Ia~~Agvs~gt~Y~yF 50 (204)
T 3anp_C 26 GFQETTATEIAKAAHVSRGTFFNYY 50 (204)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred CcccccHHHHHHHcCCchHHHHHHc
Confidence 3577999999999999999998754
No 431
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=54.59 E-value=7.7 Score=32.34 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 24 G~~~~t~~~Ia~~agvs~~t~Y~~F 48 (195)
T 2dg7_A 24 GYDNVTVTDIAERAGLTRRSYFRYF 48 (195)
T ss_dssp CGGGCCHHHHHHHTTCCHHHHHHHC
T ss_pred CccccCHHHHHHHhCCCHHHHHHHc
Confidence 4577999999999999999999864
No 432
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=54.58 E-value=25 Score=31.44 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.+.|..+||+.+|+++++|+..+.+
T Consensus 177 ~~~t~~~la~~~~l~~~~V~~~l~~ 201 (232)
T 2qlz_A 177 GRATVEELSDRLNLKEREVREKISE 201 (232)
T ss_dssp SEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 5699999999999999999877544
No 433
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=54.35 E-value=9.9 Score=32.12 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 28 Gy~~ts~~~IA~~aGvsk~tlY~~F 52 (202)
T 2i10_A 28 GYEGTSITDLTKALGINPPSLYAAF 52 (202)
T ss_dssp TTTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCChHHHHHHh
Confidence 3577999999999999999999875
No 434
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=54.34 E-value=18 Score=34.32 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHH---hhcCCCCCCCHHHHHHHh--CCCHHHHHHHHHH
Q 046578 318 LSEREADILRLH---FGLDGQTPVSCKEIGRLL--SLSRERIRQIRGI 360 (379)
Q Consensus 318 L~~rer~Vl~l~---ygL~g~e~~S~~EIAe~L--giS~~~Vr~~~~r 360 (379)
|++|++.|+... | +...+..+.+++|+.+ |+|..|||+-+..
T Consensus 15 l~eR~~~IL~~i~~~y-l~~~~pV~s~~La~~~~l~VS~aTIRrDL~~ 61 (338)
T 1stz_A 15 LNDRQRKVLYCIVREY-IENKKPVSSQRVLEVSNIEFSSATIRNDMKK 61 (338)
T ss_dssp CCHHHHHHHHHHHHHH-HHHCSCBCHHHHHHHSCCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCccHHHHHHHhCCCCCHHHHHHHHHH
Confidence 889999999831 2 2223789999999999 9999999987653
No 435
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=54.22 E-value=9.4 Score=32.00 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 35 ~~~~ti~~Ia~~agvs~~t~Y~~F 58 (207)
T 2rae_A 35 FDATSVDEVAEASGIARRTLFRYF 58 (207)
T ss_dssp TTTSCHHHHHHHTTSCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCcchHhhhC
Confidence 567999999999999999998863
No 436
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=54.14 E-value=9.6 Score=31.93 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~F 55 (220)
T 3lhq_A 32 VSATSLAEIANAAGVTRGAIYWHF 55 (220)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCceeehhhc
Confidence 567999999999999999998753
No 437
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=54.07 E-value=9.3 Score=32.01 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 36 ~~~~s~~~Ia~~agvs~~t~Y~~F 59 (212)
T 1pb6_A 36 FHGTRLEQIAELAGVSKTNLLYYF 59 (212)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHS
T ss_pred cchhhHHHHHHHHCCChhHHHHhC
Confidence 467999999999999999999864
No 438
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=53.99 E-value=9.8 Score=32.04 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||+++++++.
T Consensus 28 G~~~~ti~~Ia~~agvs~~t~Y~~F 52 (216)
T 3f0c_A 28 GLCKTTMNEIASDVGMGKASLYYYF 52 (216)
T ss_dssp CSSSCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCCcCCHHHHHHHhCCCHHHHHHHc
Confidence 3567999999999999999998864
No 439
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=53.66 E-value=8.6 Score=32.49 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 34 G~~~~t~~~IA~~agvs~~t~Y~~F 58 (218)
T 3gzi_A 34 PYAQVSIREIASLAGTDPGLIRYYF 58 (218)
T ss_dssp CCSCCCHHHHHHHHTSCTHHHHHHH
T ss_pred CCCcCCHHHHHHHhCCCHHHHHHHc
Confidence 4577999999999999999999865
No 440
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=53.56 E-value=10 Score=31.53 Aligned_cols=25 Identities=12% Similarity=0.082 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 21 G~~~~t~~~Ia~~agvs~~t~Y~~F 45 (185)
T 2yve_A 21 SLETLSYDSLAEATGLSKSGLIYHF 45 (185)
T ss_dssp CSTTCCHHHHHHHHCCCHHHHHHHC
T ss_pred ChhhccHHHHHHHhCCChHHHHHhC
Confidence 4677999999999999999999864
No 441
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=53.48 E-value=61 Score=28.52 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 337 PVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 337 ~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
.+|.++||..+|+|+.+|++. +++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~----l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRI----LKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHH----HHHHHH
Confidence 479999999999999998655 555554
No 442
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=53.31 E-value=6.2 Score=27.57 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHh---hcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Q 046578 318 LSEREADILRLHF---GLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 318 L~~rer~Vl~l~y---gL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~ 367 (379)
+++.+..+|...| ..+.+ ....-.+||..+|++...|..+....+.+.|+
T Consensus 10 ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 10 MNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp STTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 4566666776665 21111 11235578999999999999998887766543
No 443
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=53.22 E-value=6 Score=32.30 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 29 G~~~~tv~~Ia~~agvs~~t~Y~~F 53 (177)
T 3kkc_A 29 DYSKITVQDVIGLANVGRSTFYSHY 53 (177)
T ss_dssp CTTTCCHHHHHHHHCCCHHHHTTTC
T ss_pred ChhHhhHHHHHHHhCCcHhhHHHHc
Confidence 5677999999999999999998653
No 444
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=53.14 E-value=10 Score=32.14 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||+++++++.
T Consensus 47 G~~~~t~~~IA~~aGvs~~t~Y~~F 71 (222)
T 3bru_A 47 GYSSVGVDEILKAARVPKGSFYHYF 71 (222)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCCcCcHHHHHHHhCCCcchhhhhC
Confidence 4577999999999999999998764
No 445
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=53.14 E-value=10 Score=31.89 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 27 G~~~~s~~~Ia~~Agvskgt~Y~yF 51 (197)
T 2f07_A 27 GLDKASISDIVKKAGTAQGTFYLYF 51 (197)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred CcccCCHHHHHHHhCCCchHHHHhC
Confidence 3567999999999999999998864
No 446
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=53.06 E-value=16 Score=33.13 Aligned_cols=51 Identities=16% Similarity=0.149 Sum_probs=37.3
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 309 QELKELLQ--TLSEREADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 309 ~~L~~~L~--~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
......+. .|++.|-.|+...+- .|.+++|.+|||+.++++.+++..++.|
T Consensus 21 ~~~~~~l~~~~lt~~q~~vL~~L~~-~~~~~~~~~el~~~l~~~~~t~t~~l~r 73 (250)
T 1p4x_A 21 RFKKKVKPEVDMTIKEFILLTYLFH-QQENTLPFKKIVSDLCYKQSDLVQHIKV 73 (250)
T ss_dssp HHHHHHTTTCSSCHHHHHHHHHHHS-CSCSEEEHHHHHHHSSSCGGGTHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHh-cCCCCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 34444444 689999888886652 2224799999999999999998766554
No 447
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=53.04 E-value=8.5 Score=32.04 Aligned_cols=25 Identities=0% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
.++.|.++||+..|||++++++...
T Consensus 35 ~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (208)
T 3cwr_A 35 AAAMTMEGVASEAGIAKKTLYRFAS 59 (208)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHhccHHHHHHHhCCCHHHHHHHcC
Confidence 4679999999999999999998653
No 448
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=52.86 E-value=8.3 Score=32.55 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 30 ~~~~s~~~IA~~agvs~~t~Y~hF 53 (198)
T 3cjd_A 30 LASLRARELARQADCAVGAIYTHF 53 (198)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred hhhcCHHHHHHHhCCCccHHHHHh
Confidence 467999999999999999998764
No 449
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=52.82 E-value=10 Score=31.76 Aligned_cols=25 Identities=12% Similarity=-0.021 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 24 G~~~ts~~~IA~~aGvs~gtlY~~F 48 (197)
T 2gen_A 24 GVDATTIEMIRDRSGASIGSLYHHF 48 (197)
T ss_dssp CTTTCCHHHHHHHHCCCHHHHHHHT
T ss_pred CcccCCHHHHHHHHCCChHHHHHHC
Confidence 3577999999999999999998864
No 450
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.79 E-value=18 Score=26.11 Aligned_cols=51 Identities=10% Similarity=0.052 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.++.|..+|...|-.+.+ ....-.+||..+|++...|..+...-+.+.|+.
T Consensus 14 ~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 14 RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 456666666666532211 112356789999999999999998877777764
No 451
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=52.74 E-value=25 Score=27.62 Aligned_cols=50 Identities=8% Similarity=0.013 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|..+|.+-. ...+.-.|.++|.+.+ ..+..+|...+++.++||..
T Consensus 36 ~Lt~~E~~lL~~L~-~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 90 (120)
T 2z9m_A 36 ELTHREFELFHYLS-KHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIED 90 (120)
T ss_dssp CCCHHHHHHHHHHH-TTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCS
T ss_pred eCCHHHHHHHHHHH-HCCCceEcHHHHHHHHhCCCCCCCcchHHHHHHHHHHHhhc
Confidence 48999999988765 4434778999998876 25667888888887777764
No 452
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=52.58 E-value=8.7 Score=32.17 Aligned_cols=25 Identities=4% Similarity=0.052 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 25 G~~~~t~~~IA~~agvs~~tlY~~F 49 (199)
T 2o7t_A 25 HHDSLTMENIAEQAGVGVATLYRNF 49 (199)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCccCCHHHHHHHhCCCHHHHHHHc
Confidence 4577999999999999999998864
No 453
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=52.38 E-value=21 Score=34.30 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046578 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIALT 363 (379)
Q Consensus 322 er~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rAl~ 363 (379)
.+.|+.+.+- ....|..|||+.+|+|+.||+++..+-++
T Consensus 18 ~~~il~~l~~---~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 18 AGAVYRLIDQ---LGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHHHS---SCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456665542 25699999999999999999998766544
No 454
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=52.27 E-value=7.5 Score=32.37 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQI 357 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~ 357 (379)
.++.|.++||+..|||++++++.
T Consensus 29 ~~~~s~~~Ia~~agvs~~t~Y~~ 51 (203)
T 3b81_A 29 YENTTLAFIINKLGISKGALYHY 51 (203)
T ss_dssp STTCCHHHHHHHHTCCHHHHHTT
T ss_pred cccCcHHHHHHHhCCCchhHHHH
Confidence 56799999999999999999864
No 455
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=52.06 E-value=11 Score=31.70 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||+++++++.
T Consensus 48 G~~~~tv~~Ia~~agvs~~t~Y~~F 72 (218)
T 3dcf_A 48 GYYATSLDDIADRIGFTKPAIYYYF 72 (218)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CcccCcHHHHHHHhCCCHHHHHHHc
Confidence 3567999999999999999998753
No 456
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=51.99 E-value=9.4 Score=32.36 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++.|.++||+..|||++++++....
T Consensus 33 ~~~~s~~~IA~~agvs~~t~Y~~F~s 58 (221)
T 3c2b_A 33 EKALTTSGLARAANCSKESLYKWFGD 58 (221)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred cccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 46799999999999999999987643
No 457
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=51.93 E-value=11 Score=32.31 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 26 Gy~~ts~~~IA~~AGvskgtlY~~F 50 (215)
T 1ui5_A 26 GYESTTLSEIVAHAGVTKGALYFHF 50 (215)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CcccCCHHHHHHHhCCCchhhHhhC
Confidence 3577999999999999999998754
No 458
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=51.86 E-value=20 Score=32.47 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|..|||+.+|+++++|.+++..
T Consensus 35 ~~~~~~eia~~~gl~~stv~r~l~t 59 (265)
T 2ia2_A 35 QRRTLSDVARATDLTRATARRFLLT 59 (265)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 6799999999999999999887654
No 459
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=51.59 E-value=13 Score=26.79 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHH
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTN 369 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l 369 (379)
+++.+...|...|-.+.. ....-.+||..+|+|...|+.+...-+.|.|+.-
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 455555555555432210 1223567899999999999999988777776643
No 460
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=51.49 E-value=9.2 Score=32.31 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||+++++++.
T Consensus 26 G~~~~s~~~IA~~AGvs~gtlY~~F 50 (203)
T 2np5_A 26 GLEGASVREVAKRAGVSIGAVQHHF 50 (203)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred ChhhccHHHHHHHhCCCHHHHHHHc
Confidence 3567999999999999999998864
No 461
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=51.31 E-value=31 Score=26.14 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhH
Q 046578 317 TLSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQT 368 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~ 368 (379)
.+++.|..+|...|-.+.. ......+||..+|++...|+.+...-+.|.|+.
T Consensus 31 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 31 KKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 4667777777766532211 123456799999999999999999988888875
No 462
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=51.24 E-value=15 Score=33.30 Aligned_cols=40 Identities=10% Similarity=0.220 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 322 EADILRLHFGLDGQTPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 322 er~Vl~l~ygL~g~e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
+|-+-.|.++-....++|..|||+.+|++++||.+++..-
T Consensus 6 ~Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL 45 (260)
T 3r4k_A 6 SKALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSEL 45 (260)
T ss_dssp HHHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3334444442222367999999999999999999988753
No 463
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=51.22 E-value=9.4 Score=32.31 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 41 ~~~~t~~~IA~~agvs~~t~Y~~F 64 (214)
T 2zb9_A 41 TAQLTFERVARVSGVSKTTLYKWW 64 (214)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHHC
T ss_pred cccCCHHHHHHHHCCCHHHHHHHC
Confidence 467999999999999999998864
No 464
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=51.13 E-value=8.1 Score=31.98 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQI 357 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~ 357 (379)
.++.|.++||+..|||++++++.
T Consensus 25 ~~~~t~~~IA~~agvs~~t~Y~~ 47 (199)
T 3qbm_A 25 YAGTAISDIMAATGLEKGGIYRH 47 (199)
T ss_dssp STTCCHHHHHHHHTCCHHHHHTT
T ss_pred cCcCCHHHHHHHhCCCccHHHHh
Confidence 56799999999999999999874
No 465
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=51.05 E-value=12 Score=32.93 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=19.7
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHH
Q 046578 336 TPV-SCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 336 e~~-S~~EIAe~LgiS~~~Vr~~~ 358 (379)
+.+ |..++|+.||||+.+||..+
T Consensus 29 ~~LPsE~eLa~~~gVSR~tVReAL 52 (239)
T 1hw1_A 29 TILPAERELSELIGVTRTTLREVL 52 (239)
T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Confidence 667 89999999999999997543
No 466
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=50.82 E-value=38 Score=25.59 Aligned_cols=26 Identities=12% Similarity=0.201 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
+..|.++||+.+|+|+.++.+..++.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 57999999999999999999888775
No 467
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=50.80 E-value=11 Score=32.03 Aligned_cols=22 Identities=0% Similarity=0.010 Sum_probs=20.7
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 046578 339 SCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 339 S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
|++|+|+.+|+|+++|+++++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999864
No 468
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=50.67 E-value=8 Score=32.30 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 27 ~~~~ti~~IA~~agvs~~t~Y~~F 50 (193)
T 2dg8_A 27 IARVSHRRIAQRAGVPLGSMTYHF 50 (193)
T ss_dssp GGGCCHHHHHHHHTSCTHHHHHHC
T ss_pred hhhccHHHHHHHhCCCchhhheeC
Confidence 467999999999999999998753
No 469
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=50.57 E-value=11 Score=32.42 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 60 G~~~~tv~~IA~~AGvs~~t~Y~~F 84 (229)
T 3bni_A 60 GYDALSTRAVALRADVPIGSVYRFF 84 (229)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred ChhhccHHHHHHHHCCCchhHHHHc
Confidence 3577999999999999999998753
No 470
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=50.57 E-value=9.7 Score=32.17 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 20 G~~~~s~~~IA~~Agvs~~t~Y~~F 44 (212)
T 3rh2_A 20 GERTITTNHIAAHLDISPGNLYYHF 44 (212)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHC
Confidence 3567999999999999999999864
No 471
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=50.52 E-value=23 Score=28.94 Aligned_cols=43 Identities=30% Similarity=0.292 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHhhcC---CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLD---GQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~---g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
+|+.+.+..++.-..|. +....|.+|||+.+|+|+..|++++.
T Consensus 5 ~ls~~~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~ 50 (143)
T 3t8r_A 5 KISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVG 50 (143)
T ss_dssp --CHHHHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 45555544444322232 22458999999999999888876644
No 472
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=50.48 E-value=6.7 Score=32.33 Aligned_cols=24 Identities=8% Similarity=0.185 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 28 ~~~~ti~~Ia~~agvs~~t~Y~~F 51 (196)
T 3col_A 28 PAGVSTTKVAKRVGIAQSNVYLYF 51 (196)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHTTC
T ss_pred cccCCHHHHHHHhCCcHHHHHHHh
Confidence 467999999999999999998653
No 473
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=50.42 E-value=8.3 Score=32.62 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 28 G~~~~s~~~IA~~aGvskgtlY~~F 52 (210)
T 2xdn_A 28 GVARTTLADIAELAGVTRGAIYWHF 52 (210)
T ss_dssp CSTTCCHHHHHHHHTCCTTHHHHHC
T ss_pred CcccCcHHHHHHHHCCChHHHHHHh
Confidence 3577999999999999999998864
No 474
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=50.18 E-value=8.3 Score=32.54 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=21.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQI 357 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~ 357 (379)
|.++.|.++||+..|||++++++.
T Consensus 29 Gy~~ts~~~IA~~agvs~gtlY~y 52 (205)
T 1rkt_A 29 GFELTTMKDVVEESGFSRGGVYLY 52 (205)
T ss_dssp CSTTCCHHHHHHHHTSCHHHHHTT
T ss_pred CcccCCHHHHHHHHCCCcchhhhh
Confidence 357799999999999999999864
No 475
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=50.15 E-value=8.9 Score=32.15 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
..+.|.++||+..|||++++++..
T Consensus 30 ~~~~s~~~IA~~aGvs~~tlY~~F 53 (197)
T 2hyt_A 30 YADTSMDDLTAQASLTRGALYHHF 53 (197)
T ss_dssp TTTCCHHHHHHHHTCCTTHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHc
Confidence 567999999999999999998864
No 476
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=50.02 E-value=11 Score=32.12 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=21.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|..+||+..|||++++++..
T Consensus 41 G~~~~s~~~IA~~aGvskgtlY~yF 65 (214)
T 2oer_A 41 GAQRFTTARVAERAGVSIGSLYQYF 65 (214)
T ss_dssp --CCCCHHHHHHHHTCCHHHHHHHC
T ss_pred CcccccHHHHHHHhCCCCchHHHhC
Confidence 4577999999999999999998763
No 477
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=49.87 E-value=8.3 Score=32.54 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=21.5
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|..+.|.++||+..|||+++++...
T Consensus 31 G~~~~s~~~IA~~agvsk~tlY~yF 55 (199)
T 3crj_A 31 GYADLTIQRIADEYGKSTAAVHYYY 55 (199)
T ss_dssp TTTTCCHHHHHHHHTSCHHHHHTTC
T ss_pred CcccCCHHHHHHHhCCChhHHhhhc
Confidence 3567999999999999999998653
No 478
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=49.77 E-value=9.9 Score=32.23 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 25 Gy~~~s~~~IA~~AGvs~gt~Y~yF 49 (206)
T 1vi0_A 25 GYHQSQVSKIAKQAGVADGTIYLYF 49 (206)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred CcccCCHHHHHHHhCCChhHHHHHc
Confidence 3567999999999999999998753
No 479
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=49.65 E-value=10 Score=31.86 Aligned_cols=24 Identities=13% Similarity=0.084 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 28 ~~~~ti~~Ia~~agvs~~t~Y~~F 51 (216)
T 3s5r_A 28 IAATTMAEIAASVGVNPAMIHYYF 51 (216)
T ss_dssp TTTCCHHHHHHTTTCCHHHHHHHC
T ss_pred cccCCHHHHHHHHCCCHHHHHHHc
Confidence 567999999999999999999864
No 480
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=49.65 E-value=7.7 Score=30.32 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIALT 363 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rAl~ 363 (379)
..+|..|.|+.+|||.++|.++.....+
T Consensus 49 g~lS~~EAa~ry~Is~~ei~~W~r~y~~ 76 (101)
T 2oa4_A 49 GLITLAEAKQTYGLSDEEFNSWVSALAE 76 (101)
T ss_dssp TTCCHHHHHHTTCSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5699999999999999999999877643
No 481
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=49.33 E-value=10 Score=33.53 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGIA 361 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~rA 361 (379)
++.|+.++|+.||+|+++|++.+.+-
T Consensus 26 ~~~s~s~aA~~L~isq~avSr~I~~L 51 (230)
T 3cta_A 26 AYLTSSKLADMLGISQQSASRIIIDL 51 (230)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56889999999999999999887664
No 482
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=48.92 E-value=44 Score=25.12 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHhHHh
Q 046578 318 LSEREADILRLHFGLDGQ-TPVSCKEIGRLLSLSRERIRQIRGIALTKLQQTNI 370 (379)
Q Consensus 318 L~~rer~Vl~l~ygL~g~-e~~S~~EIAe~LgiS~~~Vr~~~~rAl~kLR~~l~ 370 (379)
+++.+..+|...|-.+.+ ....-.+||..+|++...|..+...-+.|.|+...
T Consensus 24 ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 24 FTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 444454555544422110 12335678999999999999999888888887654
No 483
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=48.90 E-value=13 Score=31.81 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 52 G~~~~t~~~IA~~AGvs~~tlY~~F 76 (221)
T 3g7r_A 52 GIHSVGIDRITAEAQVTRATLYRHF 76 (221)
T ss_dssp CSTTSCHHHHHHHHTCCHHHHHHHC
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHC
Confidence 3567999999999999999998754
No 484
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=48.90 E-value=32 Score=25.36 Aligned_cols=23 Identities=4% Similarity=0.173 Sum_probs=20.0
Q ss_pred CCHHHHHHHhCCCHH-HHHHHHHh
Q 046578 245 PTDSEIAEMLNIHVS-TVRLAIER 267 (379)
Q Consensus 245 pt~~eia~~Lgis~~-~~~~~l~~ 267 (379)
.+..+||+.||++.. .++..+..
T Consensus 26 ~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 26 SSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp EEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cCHHHHHHHcCCCcHHHHHHHHHH
Confidence 468899999999999 99987765
No 485
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=48.71 E-value=13 Score=31.39 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
| ++.|.++||+..|||+++++++..
T Consensus 37 G-~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 37 G-EGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp C-TTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred C-CCcCHHHHHHHhCCCHHHHHHHcC
Confidence 5 679999999999999999998653
No 486
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=48.70 E-value=11 Score=32.09 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIRG 359 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~~ 359 (379)
|.++.|.++||+..|||+++++++..
T Consensus 39 G~~~~s~~~IA~~AGVsk~tlY~~F~ 64 (207)
T 3bjb_A 39 ELARVQMHEVAKRAGVAIGTLYRYFP 64 (207)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 35679999999999999999998643
No 487
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=48.53 E-value=26 Score=26.97 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHH-HhCCCHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGR-LLSLSRERIRQIR 358 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe-~LgiS~~~Vr~~~ 358 (379)
.|++.|-.+|...+- ....|..+||+ .+++.+++|++-+
T Consensus 13 ~L~~~QfsiL~~L~~---~~~~t~~~Lae~~l~~drstvsrnl 52 (95)
T 1bja_A 13 VLNEKTATILITIAK---KDFITAAEVREVHPDLGNAVVNSNI 52 (95)
T ss_dssp SSCHHHHHHHHHHHH---STTBCHHHHHHTCTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHhcccHHHHHHHH
Confidence 789999999876652 24699999999 9999999987654
No 488
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=48.48 E-value=39 Score=28.91 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHh
Q 046578 228 AKIAEANNVLSRRLRRMPTDSEIAEMLNIHVSTVRLAIER 267 (379)
Q Consensus 228 ~ki~~a~~~l~~~lgr~pt~~eia~~Lgis~~~~~~~l~~ 267 (379)
.++.....+.....|..|+..|||+.+|++...+...+..
T Consensus 8 ~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~ 47 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIA 47 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHH
Confidence 4455555566677899999999999999998888776644
No 489
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=48.40 E-value=15 Score=34.09 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHhC-------CCHHHHHHHHHHH
Q 046578 322 EADILRLHFGLDGQTPVSCKEIGRLLS-------LSRERIRQIRGIA 361 (379)
Q Consensus 322 er~Vl~l~ygL~g~e~~S~~EIAe~Lg-------iS~~~Vr~~~~rA 361 (379)
.|.++.+.+ .+|.|..+||+.|+ +|++||++++.+-
T Consensus 11 ~R~~i~~~~----~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCF----HLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHH----HTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHH----HcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 344555544 26799999999987 9999999998764
No 490
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=47.93 E-value=34 Score=25.88 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHHHHHHHHh
Q 046578 230 IAEANNVLSRRLR-RMPTDSEIAEMLNIHVSTVRLAIER 267 (379)
Q Consensus 230 i~~a~~~l~~~lg-r~pt~~eia~~Lgis~~~~~~~l~~ 267 (379)
+.++..-+...+. ...+.+++|+.+|++...+......
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4445555666677 6789999999999999999987654
No 491
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=47.84 E-value=32 Score=28.73 Aligned_cols=24 Identities=13% Similarity=-0.036 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhC-CCHHHHHHHHHH
Q 046578 337 PVSCKEIGRLLS-LSRERIRQIRGI 360 (379)
Q Consensus 337 ~~S~~EIAe~Lg-iS~~~Vr~~~~r 360 (379)
..|..||++.++ ||..||++.+..
T Consensus 45 ~~ta~eL~~~l~~lS~aTVyrhL~~ 69 (151)
T 3u1d_A 45 VLSVEELLYRNPDETEANLRYHVDE 69 (151)
T ss_dssp CBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHhcCCCCHHHHHHHHHH
Confidence 379999999999 999999987543
No 492
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=47.77 E-value=9.6 Score=31.49 Aligned_cols=23 Identities=9% Similarity=0.088 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQI 357 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~ 357 (379)
.++.|.++||+..|||++++++.
T Consensus 29 ~~~~tv~~Ia~~agvs~~t~Y~~ 51 (196)
T 3he0_A 29 FQGLSMQKLANEAGVAAGTIYRY 51 (196)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHTT
T ss_pred cccCCHHHHHHHhCCCcchHHHh
Confidence 56799999999999999999864
No 493
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=47.70 E-value=9.4 Score=32.19 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=21.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|.++.|.++||+..|||++++++..
T Consensus 26 G~~~~s~~~IA~~aGvsk~tlY~~F 50 (203)
T 3cdl_A 26 GFEITSMDRIAARAEVSKRTVYNHF 50 (203)
T ss_dssp CTTTCCHHHHHHHTTSCHHHHHTTS
T ss_pred CchhcCHHHHHHHhCCCHHHHHHHC
Confidence 4577999999999999999998753
No 494
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=47.66 E-value=11 Score=31.55 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 335 QTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 335 ~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
.++.|.++||+..|||++++++..
T Consensus 44 ~~~~t~~~Ia~~agvs~~t~Y~~F 67 (217)
T 3mvp_A 44 YFNVTTNEIAKKADVSVGTLYAYF 67 (217)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccccCHHHHHHHhCCChhHHHHHc
Confidence 466999999999999999998754
No 495
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=47.49 E-value=11 Score=34.53 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 046578 336 TPVSCKEIGRLLSLSRERIRQIRGI 360 (379)
Q Consensus 336 e~~S~~EIAe~LgiS~~~Vr~~~~r 360 (379)
.++|..|||+.+|++++||.+++.-
T Consensus 44 ~~ltl~eia~~lgl~ksTv~RlL~t 68 (275)
T 3mq0_A 44 RDLTAAELTRFLDLPKSSAHGLLAV 68 (275)
T ss_dssp SCEEHHHHHHHHTCC--CHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5699999999999999999887643
No 496
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=47.37 E-value=36 Score=28.26 Aligned_cols=38 Identities=11% Similarity=0.104 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHH
Q 046578 320 EREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGI 360 (379)
Q Consensus 320 ~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~r 360 (379)
.|+..|..+.-- ..-.|+.|+++.| ++|++||++-+.+
T Consensus 5 ~R~~~I~~li~~---~~~~tq~eL~~~L~~~G~~VtqaTisRDL~e 47 (149)
T 1b4a_A 5 QRHIKIREIIMS---NDIETQDELVDRLREAGFNVTQATVSRDIKE 47 (149)
T ss_dssp HHHHHHHHHHHH---SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---CCCccHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 456666665321 3568999999999 9999999887653
No 497
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=47.33 E-value=6.2 Score=30.54 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=37.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHHHHHHHHHh
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRGIALTKLQQ 367 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~rAl~kLR~ 367 (379)
.|+++|..+|.+.. .......|.++|.+.+ ..+..+|...+++.++||..
T Consensus 29 ~Lt~~E~~lL~~L~-~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~ 83 (109)
T 2hqn_A 29 EVKGKPFEVLTHLA-RHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 83 (109)
T ss_dssp ECCCSTHHHHHHHH-HHTCSEEEHHHHHHHHCCSCGGGCTTHHHHHHHHHHHHTTT
T ss_pred EcCHHHHHHHHHHH-HCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhcc
Confidence 47888888887654 2323678999999988 45678888888887777764
No 498
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.19 E-value=53 Score=26.65 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCCHHHHHHHh-----CCCHHHHHHHHH
Q 046578 317 TLSEREADILRLHFGLDGQTPVSCKEIGRLL-----SLSRERIRQIRG 359 (379)
Q Consensus 317 ~L~~rer~Vl~l~ygL~g~e~~S~~EIAe~L-----giS~~~Vr~~~~ 359 (379)
++++.-+.|+.+... ....+|..||.+.+ +++..||++.+.
T Consensus 19 r~T~qR~~Il~~L~~--~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~ 64 (145)
T 2fe3_A 19 RITPQRHAILEYLVN--SMAHPTADDIYKALEGKFPNMSVATVYNNLR 64 (145)
T ss_dssp CCCHHHHHHHHHHHH--CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCCHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 688888888876543 12579999999999 999999976543
No 499
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=47.04 E-value=14 Score=31.57 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=21.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHH
Q 046578 334 GQTPVSCKEIGRLLSLSRERIRQIR 358 (379)
Q Consensus 334 g~e~~S~~EIAe~LgiS~~~Vr~~~ 358 (379)
|..+.|..+||+..|||++++++..
T Consensus 31 G~~~~s~~~IA~~AGvs~~tlY~~F 55 (208)
T 3v6g_A 31 GLGGLSHRRVAAEANVPVGSTTYYF 55 (208)
T ss_dssp CTTCCCHHHHHHHHTSCHHHHHHHC
T ss_pred CcccCCHHHHHHHhCCCchhHHHHc
Confidence 3567999999999999999998764
No 500
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=46.98 E-value=38 Score=25.92 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=34.0
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 046578 156 SIATGYQGKGLSLKDLIQEGSIGLLRGAKRFNPERGYKLSTYVYWWIKQAIIRAIA 211 (379)
Q Consensus 156 ~ia~r~~~~~~d~eDLvQEg~i~L~~ai~~fD~~~g~~FsTYa~~~Ir~~i~~~lr 211 (379)
.++..........+||.+...+.--.--..|...-|..|..|+...--..+...+.
T Consensus 14 ~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~ 69 (113)
T 3oio_A 14 SLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQ 69 (113)
T ss_dssp HHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 34444445568889988887665544444554445677777777655555555554
Done!