BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046579
(416 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 38/167 (22%)
Query: 261 LREMPMPPIPDEWEERRHQYFGESRG--HLH------------------LIEIYGPCTAL 300
LRE P P +W +R+ G +RG +LH L E +
Sbjct: 118 LRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGD 177
Query: 301 FNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILC---------- 350
F + ++ DY V V G + ++ PE + T E +GY ++
Sbjct: 178 FGLAKL-MDYKDXHVXXAVR-GXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAF 235
Query: 351 -VVREENDDDSYLVLHLPKKAVRYNLKDRTFKKLHDVAPAGNQAEDE 396
+ R NDDD L+ V+ LK++ + L DV GN ++E
Sbjct: 236 DLARLANDDDVMLL-----DWVKGLLKEKKLEALVDVDLQGNYKDEE 277
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 38/167 (22%)
Query: 261 LREMPMPPIPDEWEERRHQYFGESRG--HLH------------------LIEIYGPCTAL 300
LRE P P +W +R+ G +RG +LH L E +
Sbjct: 126 LRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGD 185
Query: 301 FNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILC---------- 350
F + ++ DY V V G + ++ PE + T E +GY ++
Sbjct: 186 FGLAKL-MDYKDXHVXXAVR-GTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAF 243
Query: 351 -VVREENDDDSYLVLHLPKKAVRYNLKDRTFKKLHDVAPAGNQAEDE 396
+ R NDDD L+ V+ LK++ + L DV GN ++E
Sbjct: 244 DLARLANDDDVMLL-----DWVKGLLKEKKLEALVDVDLQGNYKDEE 285
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 306 MKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSI---LCVVREENDDDSYL 362
M+T + WFVKY+VD+ VF + Y E + Y I LC ++ Y+
Sbjct: 297 MRTKFEAWFVKYKVDV-----VFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYI 351
Query: 363 VL 364
+
Sbjct: 352 TI 353
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 306 MKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSI---LCVVREENDDDSYL 362
M+T + WFVKY+VD+ VF + Y E + Y I LC ++ Y+
Sbjct: 295 MRTKFEAWFVKYKVDV-----VFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYI 349
Query: 363 VL 364
+
Sbjct: 350 TI 351
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 306 MKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSI---LCVVREENDDDSYL 362
M+T + WFVKY+VD+ VF + Y E + Y I LC ++ Y+
Sbjct: 303 MRTKFEAWFVKYKVDV-----VFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYI 357
Query: 363 VL 364
+
Sbjct: 358 TI 359
>pdb|1LDK|E Chain E, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 41
Score = 28.9 bits (63), Expect = 6.2, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 36 DDLLTEILLCLPIKSLLKFKAVSKHWLSLISN 67
D+LL I CL + LLK V K W L S+
Sbjct: 6 DELLLGIFSCLCLPELLKVSGVCKRWYRLASD 37
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A
P27 Peptide
Length = 336
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 36 DDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFSHRLRLVRK 79
D+LL I CL + LLK V K W L S+ L L K
Sbjct: 14 DELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK 57
>pdb|4GQ7|A Chain A, Crystal Structure Of Lg-flo1p
Length = 224
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 281 FGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPED 340
G G HL YGP TA +N +D G++ T V EM +L P+
Sbjct: 49 LGSVSGQTHLSIYYGPNTAFWNTASWSSDLFGFYTT-------PTNVTVEMTGYFLPPQT 101
Query: 341 LHY 343
Y
Sbjct: 102 GSY 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,285,229
Number of Sequences: 62578
Number of extensions: 581128
Number of successful extensions: 1284
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1276
Number of HSP's gapped (non-prelim): 13
length of query: 416
length of database: 14,973,337
effective HSP length: 101
effective length of query: 315
effective length of database: 8,652,959
effective search space: 2725682085
effective search space used: 2725682085
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)