Query 046579
Match_columns 416
No_of_seqs 164 out of 1834
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 13:35:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 8.7E-31 1.9E-35 237.4 26.0 219 127-378 1-230 (230)
2 PLN03215 ascorbic acid mannose 99.6 3E-13 6.5E-18 127.3 27.4 318 31-384 4-354 (373)
3 PF07734 FBA_1: F-box associat 99.5 9.5E-13 2.1E-17 112.5 15.2 146 235-412 1-164 (164)
4 PF08268 FBA_3: F-box associat 99.5 8.3E-13 1.8E-17 108.1 13.6 83 235-319 1-90 (129)
5 PHA02713 hypothetical protein; 99.0 9.5E-08 2.1E-12 97.4 23.4 213 127-385 299-542 (557)
6 PHA03098 kelch-like protein; P 98.8 9E-07 2E-11 90.4 23.5 213 130-388 293-523 (534)
7 KOG4441 Proteins containing BT 98.8 3.9E-07 8.5E-12 92.8 20.4 214 125-385 326-555 (571)
8 KOG4441 Proteins containing BT 98.8 7.9E-07 1.7E-11 90.6 21.5 215 129-390 282-513 (571)
9 PF12937 F-box-like: F-box-lik 98.7 1.1E-08 2.4E-13 67.5 3.6 38 32-69 2-39 (47)
10 PHA02713 hypothetical protein; 98.7 1.9E-06 4.2E-11 87.9 21.6 199 147-390 273-503 (557)
11 PLN02153 epithiospecifier prot 98.7 1.2E-05 2.6E-10 77.3 25.6 180 128-318 29-234 (341)
12 PLN02193 nitrile-specifier pro 98.7 2.1E-05 4.5E-10 78.9 26.4 162 146-319 193-361 (470)
13 smart00256 FBOX A Receptor for 98.6 3.9E-08 8.6E-13 62.8 3.1 38 34-71 1-38 (41)
14 PHA02790 Kelch-like protein; P 98.5 1.7E-05 3.7E-10 79.7 22.1 158 130-318 270-432 (480)
15 TIGR03547 muta_rot_YjhT mutatr 98.5 8.3E-05 1.8E-09 71.6 24.9 172 127-319 13-237 (346)
16 PF00646 F-box: F-box domain; 98.5 1.1E-07 2.3E-12 63.1 2.5 40 32-71 4-43 (48)
17 PLN02153 epithiospecifier prot 98.4 8.5E-05 1.8E-09 71.4 23.2 183 127-319 81-294 (341)
18 TIGR03548 mutarot_permut cycli 98.4 0.00015 3.3E-09 69.1 24.4 151 147-318 40-203 (323)
19 PHA03098 kelch-like protein; P 98.4 2.6E-05 5.6E-10 79.7 19.2 173 127-318 338-520 (534)
20 PHA02790 Kelch-like protein; P 98.3 3.7E-05 8E-10 77.3 18.9 163 126-314 313-475 (480)
21 PLN02193 nitrile-specifier pro 98.3 0.00021 4.6E-09 71.7 23.3 203 147-386 138-361 (470)
22 PRK14131 N-acetylneuraminic ac 98.3 0.00037 7.9E-09 67.9 23.0 172 127-319 34-258 (376)
23 TIGR03548 mutarot_permut cycli 97.8 0.0019 4.1E-08 61.6 18.4 151 126-294 118-312 (323)
24 PRK14131 N-acetylneuraminic ac 97.7 0.0094 2E-07 58.1 22.2 88 205-294 189-288 (376)
25 TIGR03547 muta_rot_YjhT mutatr 97.3 0.025 5.4E-07 54.4 18.7 111 205-319 168-308 (346)
26 KOG4693 Uncharacterized conser 97.3 0.0063 1.4E-07 54.2 12.9 210 145-384 43-284 (392)
27 KOG4693 Uncharacterized conser 97.3 0.0036 7.9E-08 55.7 10.8 111 205-318 157-285 (392)
28 KOG2120 SCF ubiquitin ligase, 97.2 0.00029 6.3E-09 63.9 3.5 41 30-70 97-137 (419)
29 KOG0379 Kelch repeat-containin 97.0 0.13 2.8E-06 51.8 20.9 224 130-387 70-312 (482)
30 KOG0379 Kelch repeat-containin 96.9 0.24 5.3E-06 49.9 21.5 185 124-320 116-312 (482)
31 PF07762 DUF1618: Protein of u 96.8 0.0083 1.8E-07 48.9 8.8 84 244-327 1-104 (131)
32 KOG1230 Protein containing rep 96.3 0.23 5.1E-06 47.3 15.2 204 146-388 98-351 (521)
33 KOG2997 F-box protein FBX9 [Ge 95.7 0.0046 1E-07 56.5 1.4 41 31-71 107-152 (366)
34 KOG0281 Beta-TrCP (transducin 95.4 0.0097 2.1E-07 54.9 2.5 38 33-70 77-118 (499)
35 PF13964 Kelch_6: Kelch motif 94.9 0.089 1.9E-06 34.7 5.3 40 128-167 8-49 (50)
36 PF13360 PQQ_2: PQQ-like domai 94.6 3.1 6.8E-05 37.0 17.6 106 130-260 35-143 (238)
37 KOG1230 Protein containing rep 94.3 0.42 9.2E-06 45.6 10.0 109 206-318 99-224 (521)
38 PF02191 OLF: Olfactomedin-lik 91.4 11 0.00024 34.4 16.9 81 229-309 68-156 (250)
39 PRK11138 outer membrane biogen 91.3 15 0.00033 35.8 22.5 31 233-263 250-282 (394)
40 PF13964 Kelch_6: Kelch motif 91.2 0.56 1.2E-05 30.7 4.7 33 233-265 5-44 (50)
41 PF07893 DUF1668: Protein of u 89.9 14 0.00031 35.4 14.9 126 239-386 76-217 (342)
42 TIGR01640 F_box_assoc_1 F-box 88.6 12 0.00026 33.4 12.8 32 237-269 3-34 (230)
43 PRK11138 outer membrane biogen 87.7 29 0.00062 33.9 19.1 52 206-263 131-186 (394)
44 smart00284 OLF Olfactomedin-li 85.9 27 0.0006 31.8 14.3 81 229-309 73-161 (255)
45 PF01344 Kelch_1: Kelch motif; 85.7 0.88 1.9E-05 29.2 2.7 39 127-165 7-47 (47)
46 KOG4152 Host cell transcriptio 85.6 15 0.00033 36.4 11.9 63 146-218 57-119 (830)
47 PF07646 Kelch_2: Kelch motif; 84.8 2.4 5.2E-05 27.6 4.5 34 233-266 5-47 (49)
48 KOG4341 F-box protein containi 84.1 0.71 1.5E-05 44.5 2.3 37 33-69 74-110 (483)
49 PF07893 DUF1668: Protein of u 83.6 43 0.00093 32.1 16.5 154 124-295 69-253 (342)
50 PF13418 Kelch_4: Galactose ox 82.8 2 4.4E-05 27.8 3.5 21 145-165 28-48 (49)
51 PF10282 Lactonase: Lactonase, 81.9 38 0.00082 32.4 13.4 124 239-388 154-289 (345)
52 TIGR03300 assembly_YfgL outer 81.3 53 0.0012 31.6 20.2 56 206-262 156-215 (377)
53 PF13415 Kelch_3: Galactose ox 80.7 5 0.00011 26.0 4.8 24 145-168 18-41 (49)
54 TIGR02658 TTQ_MADH_Hv methylam 79.9 59 0.0013 31.3 14.4 123 237-386 203-341 (352)
55 TIGR03075 PQQ_enz_alc_DH PQQ-d 78.6 55 0.0012 33.5 13.9 32 232-263 62-95 (527)
56 PF13360 PQQ_2: PQQ-like domai 78.5 47 0.001 29.3 14.6 142 206-388 4-152 (238)
57 TIGR03074 PQQ_membr_DH membran 76.2 71 0.0015 34.3 14.1 32 232-263 187-220 (764)
58 PF13570 PQQ_3: PQQ-like domai 75.5 4.1 9E-05 25.1 3.1 26 233-258 15-40 (40)
59 smart00612 Kelch Kelch domain. 75.2 8 0.00017 24.1 4.6 18 204-221 14-31 (47)
60 cd01206 Homer Homer type EVH1 74.2 7.9 0.00017 30.0 4.8 41 146-196 11-52 (111)
61 PF07646 Kelch_2: Kelch motif; 73.5 10 0.00022 24.5 4.8 37 129-165 9-49 (49)
62 PF13418 Kelch_4: Galactose ox 72.6 6.7 0.00015 25.2 3.7 30 235-264 7-44 (49)
63 KOG0274 Cdc4 and related F-box 72.2 1.5 3.3E-05 44.6 0.7 41 31-71 108-148 (537)
64 COG4257 Vgb Streptogramin lyas 71.9 44 0.00095 30.8 9.6 120 126-269 194-317 (353)
65 PF13415 Kelch_3: Galactose ox 71.6 4.8 0.0001 26.1 2.8 23 368-390 19-41 (49)
66 PF01344 Kelch_1: Kelch motif; 70.6 24 0.00051 22.2 6.6 40 280-319 6-46 (47)
67 smart00564 PQQ beta-propeller 70.5 9.8 0.00021 21.9 3.8 25 236-260 3-27 (33)
68 smart00612 Kelch Kelch domain. 70.3 9 0.0002 23.9 3.9 24 145-168 14-37 (47)
69 COG1520 FOG: WD40-like repeat 68.8 1.1E+02 0.0025 29.4 13.6 142 206-388 36-183 (370)
70 PF06433 Me-amine-dh_H: Methyl 65.7 1.3E+02 0.0028 28.8 19.7 129 232-386 186-331 (342)
71 TIGR03300 assembly_YfgL outer 65.0 1.3E+02 0.0029 28.8 21.1 31 233-263 235-267 (377)
72 PF12458 DUF3686: ATPase invol 64.3 38 0.00082 33.1 8.1 36 130-165 237-272 (448)
73 KOG3545 Olfactomedin and relat 64.0 1.1E+02 0.0024 27.7 10.5 80 229-308 67-154 (249)
74 PF13013 F-box-like_2: F-box-l 64.0 9 0.00019 29.9 3.3 30 30-59 21-50 (109)
75 cd01207 Ena-Vasp Enabled-VASP- 61.1 42 0.00092 26.3 6.6 45 146-197 9-53 (111)
76 cd00216 PQQ_DH Dehydrogenases 59.1 1.3E+02 0.0027 30.5 11.6 32 232-263 54-87 (488)
77 PF01011 PQQ: PQQ enzyme repea 59.1 24 0.00051 21.4 4.0 28 361-388 2-30 (38)
78 KOG2437 Muskelin [Signal trans 58.1 28 0.0006 34.7 6.1 133 232-384 263-420 (723)
79 PF12768 Rax2: Cortical protei 54.5 1.8E+02 0.0039 27.0 10.7 63 204-266 15-81 (281)
80 KOG0649 WD40 repeat protein [G 50.6 74 0.0016 28.7 7.1 28 358-385 126-153 (325)
81 PLN02772 guanylate kinase 50.3 98 0.0021 30.3 8.5 72 232-309 27-108 (398)
82 PF15408 PH_7: Pleckstrin homo 48.4 10 0.00022 27.8 1.2 24 48-71 76-99 (104)
83 KOG0293 WD40 repeat-containing 44.4 3.2E+02 0.0069 26.8 14.8 135 206-383 335-477 (519)
84 COG3055 Uncharacterized protei 44.2 1.2E+02 0.0026 29.1 7.7 106 206-318 114-264 (381)
85 PF00780 CNH: CNH domain; Int 42.0 2.7E+02 0.0057 25.2 10.6 73 285-387 103-176 (275)
86 PF08268 FBA_3: F-box associat 41.8 48 0.001 26.5 4.4 18 367-384 19-36 (129)
87 PF10282 Lactonase: Lactonase, 41.4 3.2E+02 0.0069 26.0 24.0 172 178-385 148-333 (345)
88 PF08450 SGL: SMP-30/Gluconola 40.1 2.7E+02 0.0058 24.8 14.1 109 239-385 11-131 (246)
89 KOG1036 Mitotic spindle checkp 39.9 3.2E+02 0.007 25.6 15.2 21 359-379 145-166 (323)
90 KOG2502 Tub family proteins [G 36.6 36 0.00078 32.2 3.2 38 30-67 44-89 (355)
91 KOG0321 WD40 repeat-containing 34.6 1.5E+02 0.0032 30.6 7.2 116 235-382 60-181 (720)
92 PF12458 DUF3686: ATPase invol 34.0 3.9E+02 0.0084 26.4 9.6 38 359-396 238-281 (448)
93 PF02897 Peptidase_S9_N: Proly 34.0 4.5E+02 0.0098 25.5 21.3 116 237-384 285-412 (414)
94 KOG0310 Conserved WD40 repeat- 33.6 5E+02 0.011 25.9 11.9 183 152-387 8-194 (487)
95 PF05096 Glu_cyclase_2: Glutam 33.6 3.8E+02 0.0083 24.6 15.2 145 204-388 67-215 (264)
96 KOG2055 WD40 repeat protein [G 33.1 5E+02 0.011 25.8 13.6 106 248-388 279-386 (514)
97 KOG0647 mRNA export protein (c 32.0 3.6E+02 0.0078 25.3 8.6 44 358-409 83-127 (347)
98 PF06433 Me-amine-dh_H: Methyl 31.5 2.8E+02 0.0061 26.5 8.2 91 148-257 69-165 (342)
99 KOG3669 Uncharacterized conser 31.0 6.1E+02 0.013 26.2 10.8 92 206-320 209-304 (705)
100 KOG3926 F-box proteins [Amino 26.7 46 0.001 30.4 2.0 39 28-66 199-238 (332)
101 PF13088 BNR_2: BNR repeat-lik 26.0 4.9E+02 0.011 23.4 9.3 108 206-321 135-254 (275)
102 TIGR03075 PQQ_enz_alc_DH PQQ-d 25.4 7.5E+02 0.016 25.3 12.3 61 206-267 131-201 (527)
103 KOG1920 IkappaB kinase complex 23.9 1.1E+03 0.024 26.8 14.1 71 250-324 267-337 (1265)
104 PRK13259 regulatory protein Sp 23.9 92 0.002 23.6 2.9 37 123-159 33-69 (94)
105 KOG0645 WD40 repeat protein [G 22.8 6.2E+02 0.013 23.5 9.4 68 299-390 37-105 (312)
106 KOG1852 Cell cycle-associated 22.3 33 0.00072 28.3 0.3 28 44-71 144-173 (223)
107 KOG2055 WD40 repeat protein [G 22.3 2.7E+02 0.0058 27.6 6.3 28 361-388 272-300 (514)
108 PF03478 DUF295: Protein of un 22.0 1.7E+02 0.0038 19.2 3.8 18 358-375 31-54 (54)
109 KOG2437 Muskelin [Signal trans 21.7 1.6E+02 0.0036 29.5 4.8 115 148-268 231-365 (723)
110 PF07370 DUF1489: Protein of u 20.3 76 0.0016 25.8 2.0 24 235-258 43-71 (137)
111 PF02393 US22: US22 like; Int 20.2 1.6E+02 0.0035 23.1 3.9 26 359-384 82-107 (125)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=8.7e-31 Score=237.36 Aligned_cols=219 Identities=19% Similarity=0.301 Sum_probs=156.7
Q ss_pred EeeeCceEEeeecCCCCCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceE
Q 046579 127 LQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQ 206 (416)
Q Consensus 127 ~~s~~GLvl~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~ 206 (416)
++|||||||+... ..++||||+||+++.||+++...... ....++||||+. +++||||++...... .....
T Consensus 1 ~~sCnGLlc~~~~------~~~~V~NP~T~~~~~LP~~~~~~~~~-~~~~~~~G~d~~-~~~YKVv~~~~~~~~-~~~~~ 71 (230)
T TIGR01640 1 VVPCDGLICFSYG------KRLVVWNPSTGQSRWLPTPKSRRSNK-ESDTYFLGYDPI-EKQYKVLCFSDRSGN-RNQSE 71 (230)
T ss_pred CcccceEEEEecC------CcEEEECCCCCCEEecCCCCCccccc-ccceEEEeeccc-CCcEEEEEEEeecCC-CCCcc
Confidence 4689999988752 56999999999999999766421111 112578999997 789999999775321 13468
Q ss_pred EEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeCC------cEEEEEcCCceEe-ecCCCCCCCccccccee
Q 046579 207 IEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHG------SSLYFDVDQEKLR-EMPMPPIPDEWEERRHQ 279 (416)
Q Consensus 207 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~------~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~ 279 (416)
++||++++++||.+....+. ......+|++||.+||++... .|++||+++|+|+ .|++|...... ....
T Consensus 72 ~~Vys~~~~~Wr~~~~~~~~--~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~--~~~~ 147 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSPPH--HPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDS--VDYL 147 (230)
T ss_pred EEEEEeCCCCccccccCCCC--ccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccccc--ccce
Confidence 99999999999998632221 112234999999999998642 6999999999999 58888643211 1124
Q ss_pred EEEEeCCeEEEEEEecCCcCeEEEEEEeCC-CCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCC
Q 046579 280 YFGESRGHLHLIEIYGPCTALFNVYEMKTD-YSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDD 358 (416)
Q Consensus 280 ~l~~~~G~L~~v~~~~~~~~~l~iW~l~~~-~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (416)
.|++.+|+||++..... ...++||+|+++ ...|++.++|++..+ +.+. ....+.++.+ +
T Consensus 148 ~L~~~~G~L~~v~~~~~-~~~~~IWvl~d~~~~~W~k~~~i~~~~~----~~~~-----------~~~~~~~~~~----~ 207 (230)
T TIGR01640 148 SLINYKGKLAVLKQKKD-TNNFDLWVLNDAGKQEWSKLFTVPIPPL----PDLV-----------DDNFLSGFTD----K 207 (230)
T ss_pred EEEEECCEEEEEEecCC-CCcEEEEEECCCCCCceeEEEEEcCcch----hhhh-----------hheeEeEEee----C
Confidence 68999999999987532 245999999975 457999999986432 2222 1134677765 4
Q ss_pred CcEEEEeeC--C-eEEEEEcCCC
Q 046579 359 DSYLVLHLP--K-KAVRYNLKDR 378 (416)
Q Consensus 359 ~~~i~l~~~--~-~l~~ydl~~~ 378 (416)
+++++...+ . .++.||++++
T Consensus 208 g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 208 GEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred CEEEEEeCCCCceEEEEEeccCC
Confidence 666666543 3 4999999875
No 2
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.64 E-value=3e-13 Score=127.28 Aligned_cols=318 Identities=13% Similarity=0.082 Sum_probs=166.9
Q ss_pred cccCCHHHHHHHHccCC-hhhhhhhhcchHhHhhhhcCccccccccccccCcceeEEeecccCCCCCceeEEeCCCCCCC
Q 046579 31 TIINNDDLLTEILLCLP-IKSLLKFKAVSKHWLSLISNPIFSHRLRLVRKLISGLFVRRFTLRVNNPEYDFINLESNPSR 109 (416)
Q Consensus 31 ~~~LPddll~eIL~rLP-~~~l~r~~~VcK~W~~li~s~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (416)
+..||+|||..|..||| ..++.|+|+||++||+.+.... . .++.++.++++...... .. .............
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~--~--~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 76 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG--K--KNPFRTRPLILFNPINP-SE--TLTDDRSYISRPG 76 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc--c--cCCcccccccccCcccC-CC--Ccccccccccccc
Confidence 56799999999999998 6699999999999999876421 0 01101123333221000 00 0000000000000
Q ss_pred CCCCcccccCCCCCeEE---EeeeCceEEeeecCCCCCCceEEEEccCCcceEecCCCCcCCCcce---eeeeEEE-EeC
Q 046579 110 APFKSLTFVNDSYGIKV---LQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFR---SIFGVNL-AFD 182 (416)
Q Consensus 110 ~~~~~~~f~~~~~~~~~---~~s~~GLvl~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~---~~~~~~l-~~d 182 (416)
.......+ +.+ .++..|+|.-.... ...+.+.+.||+++.-..+|+...+--... ...++.+ ..+
T Consensus 77 ~~ls~~~~------~r~~~~~~~~~~WLik~~~~--~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~ 148 (373)
T PLN03215 77 AFLSRAAF------FRVTLSSSPSKGWLIKSDMD--VNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWA 148 (373)
T ss_pred ceeeeeEE------EEeecCCCCCCCcEEEEecc--ccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecc
Confidence 00000011 111 13568888776542 134668999999999877775322100000 0011111 111
Q ss_pred CC--CCCCeE-EEEEEecCCCCCCceEEEEEEC------CCCCeeeccCCCccccccccCCcEEEccEEEEEeeCCcEEE
Q 046579 183 PS--KSAHYK-VICVRNCDSLRDGHYQIEIYSS------KTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLY 253 (416)
Q Consensus 183 ~~--~~~~yk-Vv~~~~~~~~~~~~~~~~vyss------~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~il~ 253 (416)
.. ....|+ ++.+.....+......+.|+.. ..+.|..++.. .......++.+|.+|-+...+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~-----~~~~~DIi~~kGkfYAvD~~G~l~~ 223 (373)
T PLN03215 149 KRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQM-----GYHFSDIIVHKGQTYALDSIGIVYW 223 (373)
T ss_pred cccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEccCC-----CceeeEEEEECCEEEEEcCCCeEEE
Confidence 10 001131 1111111111101111222211 14677776421 2245789999999999987788888
Q ss_pred EEcCCceEeecCCCCC--CCcccccceeEEEEeCCeEEEEEEecC--------------CcCeEEEEEEeCCCCCceEEE
Q 046579 254 FDVDQEKLREMPMPPI--PDEWEERRHQYFGESRGHLHLIEIYGP--------------CTALFNVYEMKTDYSGWFVKY 317 (416)
Q Consensus 254 fD~~~e~~~~i~~P~~--~~~~~~~~~~~l~~~~G~L~~v~~~~~--------------~~~~l~iW~l~~~~~~W~~~~ 317 (416)
+|..-+ .+.+..+.. +.........+|+++.|+|++|...-. ....++|++++...++|+++.
T Consensus 224 i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~ 302 (373)
T PLN03215 224 INSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVK 302 (373)
T ss_pred EecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEec
Confidence 884322 222221110 110111123579999999999987421 124699999997778999999
Q ss_pred EEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEEeeCCeEEEEEcCCCcEEEee
Q 046579 318 RVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHLPKKAVRYNLKDRTFKKLH 384 (416)
Q Consensus 318 ~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~ydl~~~~~~~v~ 384 (416)
+++-..++.... ..+.+.+-... +-.++.||...+....+||++.++..-+.
T Consensus 303 sLgd~aLFlG~~--------------~s~sv~a~e~p-G~k~NcIYFtdd~~~~v~~~~dg~~~~~~ 354 (373)
T PLN03215 303 TLGDNAFVMATD--------------TCFSVLAHEFY-GCLPNSIYFTEDTMPKVFKLDNGNGSSIE 354 (373)
T ss_pred ccCCeEEEEECC--------------ccEEEecCCCC-CccCCEEEEECCCcceEEECCCCCccceE
Confidence 987555543211 11111111111 22467899999999999999999977765
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.49 E-value=9.5e-13 Score=112.47 Aligned_cols=146 Identities=23% Similarity=0.385 Sum_probs=93.0
Q ss_pred cEEEccEEEEEeeCC------cEEEEEcCCceE-eecCCCCCCCcccccceeEEE-EeCCeEEEEEEecCCcCeEEEEEE
Q 046579 235 GVFWNGAIHWVSTHG------SSLYFDVDQEKL-REMPMPPIPDEWEERRHQYFG-ESRGHLHLIEIYGPCTALFNVYEM 306 (416)
Q Consensus 235 ~v~~~G~lyw~~~~~------~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~~l~-~~~G~L~~v~~~~~~~~~l~iW~l 306 (416)
+|++||.+||++... .|++||+++|+| ..+++|..... ......|+ ..+|+||++.... ....++||+|
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~--~~~~~~L~~v~~~~L~~~~~~~-~~~~~~IWvm 77 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDD--DDDSVSLSVVRGDCLCVLYQCD-ETSKIEIWVM 77 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCc--cCCEEEEEEecCCEEEEEEecc-CCccEEEEEE
Confidence 689999999998752 599999999999 78888865441 12233464 4478999996532 2356999999
Q ss_pred eCC---CCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEE-eeC------CeEEEEEcC
Q 046579 307 KTD---YSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVL-HLP------KKAVRYNLK 376 (416)
Q Consensus 307 ~~~---~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l-~~~------~~l~~ydl~ 376 (416)
++. .++|+|..+|++.........+ . ....+... ++.+++. ..+ ..++.|+ +
T Consensus 78 ~~~~~~~~SWtK~~~i~~~~~~~~~~~~------------~--~~~~~i~~---~~~vlv~~~~~~~~~~~~~i~i~g-~ 139 (164)
T PF07734_consen 78 KKYGYGKESWTKLFTIDLPPLPSLFFHF------------R--NPSFFIDE---EKKVLVCCDKETQREEKNKIYIVG-E 139 (164)
T ss_pred eeeccCcceEEEEEEEecCCCCCccccc------------c--cceEEEeC---CCeEEEEEcCCCCccceeEEEEEc-C
Confidence 952 5689999999876543211100 0 11122221 2333333 211 4577777 6
Q ss_pred CCcEEEeeecCCCCCCcchhhhhhhccccccccccc
Q 046579 377 DRTFKKLHDVAPAGNQAEDESALQFRWFDAFQYTES 412 (416)
Q Consensus 377 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~y~~s 412 (416)
++.++++. +.. .+.+|.....||||
T Consensus 140 ~~~~~~~~-~~~----------~~~~~~~~~~YvpS 164 (164)
T PF07734_consen 140 DGKFIEVD-IED----------KSSCWPSICNYVPS 164 (164)
T ss_pred CCEEEEcc-ccc----------CCCCCCCEEEECCC
Confidence 66777765 211 12578888899998
No 4
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.48 E-value=8.3e-13 Score=108.13 Aligned_cols=83 Identities=23% Similarity=0.380 Sum_probs=64.9
Q ss_pred cEEEccEEEEEeeC-----CcEEEEEcCCceEeecCCCCCCCcccccceeEEEEeCCeEEEEEEecCC-cCeEEEEEEeC
Q 046579 235 GVFWNGAIHWVSTH-----GSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPC-TALFNVYEMKT 308 (416)
Q Consensus 235 ~v~~~G~lyw~~~~-----~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~-~~~l~iW~l~~ 308 (416)
++++||.+||++.. ..|++||+.+|+|+.|++|..+. .......|.+.+|+|+++...... ...++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~--~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPY--SSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeec--cccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 68999999999876 47999999999999999982211 112334689999999999876532 25699999998
Q ss_pred C-CCCceEEEEE
Q 046579 309 D-YSGWFVKYRV 319 (416)
Q Consensus 309 ~-~~~W~~~~~i 319 (416)
. .++|++++.+
T Consensus 79 ~~k~~Wsk~~~~ 90 (129)
T PF08268_consen 79 YEKQEWSKKHIV 90 (129)
T ss_pred cccceEEEEEEE
Confidence 5 5689987664
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.00 E-value=9.5e-08 Score=97.44 Aligned_cols=213 Identities=11% Similarity=0.155 Sum_probs=127.9
Q ss_pred EeeeCceEEeeecCC--CCCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCc
Q 046579 127 LQSCNGLLLCSSSRA--YQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGH 204 (416)
Q Consensus 127 ~~s~~GLvl~~~~~~--~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~ 204 (416)
++..+|.|.+.++.. ......++.+||.+++|..+|+++.++.. ++++ .++ =||+.+++.... ...
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~----~~~~-~~~------g~IYviGG~~~~-~~~ 366 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR----FSLA-VID------DTIYAIGGQNGT-NVE 366 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc----eeEE-EEC------CEEEEECCcCCC-CCC
Confidence 455677776666532 11235589999999999999998864321 1211 111 255555554321 123
Q ss_pred eEEEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeC------------------------CcEEEEEcCCce
Q 046579 205 YQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTH------------------------GSSLYFDVDQEK 260 (416)
Q Consensus 205 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~------------------------~~il~fD~~~e~ 260 (416)
..+++|+..+++|+..... +. .......+.++|.+|-+... ..+.+||+.+++
T Consensus 367 ~sve~Ydp~~~~W~~~~~m-p~--~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~ 443 (557)
T PHA02713 367 RTIECYTMGDDKWKMLPDM-PI--ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI 443 (557)
T ss_pred ceEEEEECCCCeEEECCCC-Cc--ccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe
Confidence 4799999999999986431 11 12334577889999998653 247899999999
Q ss_pred EeecCCCCCCCcccccceeEEEEeCCeEEEEEEecCCcCeE-EEEEEeCCC-CCceEEEEEcccccccccccchhccCCC
Q 046579 261 LREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALF-NVYEMKTDY-SGWFVKYRVDLGGVTYVFPEMIRTYLDP 338 (416)
Q Consensus 261 ~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~~~l-~iW~l~~~~-~~W~~~~~i~~~~l~~~~p~~~~~~~~~ 338 (416)
|+.++. .+.... ...++..+|+|+++....+..... .|...+-.. .+|+....++.+.
T Consensus 444 W~~v~~--m~~~r~---~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--------------- 503 (557)
T PHA02713 444 WETLPN--FWTGTI---RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--------------- 503 (557)
T ss_pred EeecCC--CCcccc---cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc---------------
Confidence 997632 211111 123678899999997643221111 244555444 5899766542211
Q ss_pred CCCceeeeEEEEeecCCCCCCcEEEEee-CC--eEEEEEcCCCcEEEeee
Q 046579 339 EDLHYYGYSILCVVREENDDDSYLVLHL-PK--KAVRYNLKDRTFKKLHD 385 (416)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~--~l~~ydl~~~~~~~v~~ 385 (416)
.......+ ++.+..+++ ++ .+-.||+.|++|..+..
T Consensus 504 -----~~~~~~~~------~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 504 -----SALHTILH------DNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred -----ccceeEEE------CCEEEEEeeecceeehhhcCcccccccchhh
Confidence 12223322 243333443 22 68899999999999874
No 6
>PHA03098 kelch-like protein; Provisional
Probab=98.83 E-value=9e-07 Score=90.42 Aligned_cols=213 Identities=14% Similarity=0.138 Sum_probs=125.0
Q ss_pred eCceEEeeecCCCC--CCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceEE
Q 046579 130 CNGLLLCSSSRAYQ--PRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQI 207 (416)
Q Consensus 130 ~~GLvl~~~~~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~ 207 (416)
.++.|.+..+.... ....++.+||.|++|..+|+++.++.. .+++ ..+ =+++.+.+.... .....+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~----~~~~-~~~------~~lyv~GG~~~~-~~~~~v 360 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN----PGVT-VFN------NRIYVIGGIYNS-ISLNTV 360 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc----ceEE-EEC------CEEEEEeCCCCC-EecceE
Confidence 44555554433211 123689999999999999988754332 2211 111 235555544311 123468
Q ss_pred EEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeC-------CcEEEEEcCCceEeecCCCCCCCcccccceeE
Q 046579 208 EIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTH-------GSSLYFDVDQEKLREMPMPPIPDEWEERRHQY 280 (416)
Q Consensus 208 ~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~-------~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~ 280 (416)
++|+..+++|+.... .+. .......+.++|.+|-+.+. ..+..||+.+++|..+...+.+.. . ..
T Consensus 361 ~~yd~~~~~W~~~~~-lp~--~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~--~---~~ 432 (534)
T PHA03098 361 ESWKPGESKWREEPP-LIF--PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY--G---GC 432 (534)
T ss_pred EEEcCCCCceeeCCC-cCc--CCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc--C---ce
Confidence 999999999997642 111 12334567789999998762 257899999999998743222111 1 12
Q ss_pred EEEeCCeEEEEEEecCCcC---eEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCC
Q 046579 281 FGESRGHLHLIEIYGPCTA---LFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREEND 357 (416)
Q Consensus 281 l~~~~G~L~~v~~~~~~~~---~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (416)
.+..+|+|+++........ .-.+|..+-...+|+....+.. |. ..... +..
T Consensus 433 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-------~r-------------~~~~~-~~~----- 486 (534)
T PHA03098 433 AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-------PR-------------INASL-CIF----- 486 (534)
T ss_pred EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCc-------cc-------------ccceE-EEE-----
Confidence 4567899998875432111 1237777766678986543211 11 01111 111
Q ss_pred CCcEEEEee------CCeEEEEEcCCCcEEEeeecCC
Q 046579 358 DDSYLVLHL------PKKAVRYNLKDRTFKKLHDVAP 388 (416)
Q Consensus 358 ~~~~i~l~~------~~~l~~ydl~~~~~~~v~~~~~ 388 (416)
++.++++++ ...+..||+++++|+.++..++
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 233333332 2479999999999999986544
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.83 E-value=3.9e-07 Score=92.79 Aligned_cols=214 Identities=15% Similarity=0.189 Sum_probs=135.3
Q ss_pred EEEeeeCceEEeeecCC--CCCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCC
Q 046579 125 KVLQSCNGLLLCSSSRA--YQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRD 202 (416)
Q Consensus 125 ~~~~s~~GLvl~~~~~~--~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~ 202 (416)
.-++..+|.|...++.. ......+..+||.+++|..+|++...+.. .+ ++ .-..+|+++.+.... .
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~----~~--v~-----~l~g~iYavGG~dg~-~ 393 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD----FG--VA-----VLDGKLYAVGGFDGE-K 393 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc----ce--eE-----EECCEEEEEeccccc-c
Confidence 34666788888777653 12335699999999999999999874432 22 11 123456666555422 2
Q ss_pred CceEEEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeC-------CcEEEEEcCCceEeecCCCCCCCcccc
Q 046579 203 GHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTH-------GSSLYFDVDQEKLREMPMPPIPDEWEE 275 (416)
Q Consensus 203 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~-------~~il~fD~~~e~~~~i~~P~~~~~~~~ 275 (416)
....+|.|+..+++|......... -....++.++|.+|-+... ..+.+||+.+++|..++ +.....
T Consensus 394 ~l~svE~YDp~~~~W~~va~m~~~---r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~--~M~~~R-- 466 (571)
T KOG4441|consen 394 SLNSVECYDPVTNKWTPVAPMLTR---RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA--PMNTRR-- 466 (571)
T ss_pred ccccEEEecCCCCcccccCCCCcc---eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC--Cccccc--
Confidence 344799999999999987532221 1345677899999998763 25899999999999762 222211
Q ss_pred cceeEEEEeCCeEEEEEEecCCcCeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCC
Q 046579 276 RRHQYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREE 355 (416)
Q Consensus 276 ~~~~~l~~~~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (416)
....++..+|+|+.+...++....-.|=..+-....|+....+..+. ....+..+
T Consensus 467 -~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r--------------------s~~g~~~~---- 521 (571)
T KOG4441|consen 467 -SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR--------------------SAVGVVVL---- 521 (571)
T ss_pred -ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc--------------------ccccEEEE----
Confidence 11237788999999987765222222333333346798775432211 11122211
Q ss_pred CCCCcEEEE-ee------CCeEEEEEcCCCcEEEeee
Q 046579 356 NDDDSYLVL-HL------PKKAVRYNLKDRTFKKLHD 385 (416)
Q Consensus 356 ~~~~~~i~l-~~------~~~l~~ydl~~~~~~~v~~ 385 (416)
++.+|+ .. -..+-.||+.+++|+....
T Consensus 522 ---~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 522 ---GGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ---CCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 334444 22 2589999999999999987
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.80 E-value=7.9e-07 Score=90.58 Aligned_cols=215 Identities=17% Similarity=0.188 Sum_probs=131.9
Q ss_pred eeCceEEeeecCC--CCCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceE
Q 046579 129 SCNGLLLCSSSRA--YQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQ 206 (416)
Q Consensus 129 s~~GLvl~~~~~~--~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~ 206 (416)
++.|.|.+..+.. ......+..+||.+++|..+.+++.++.. .+++.. . -+|+.+.+........-.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~----~~~~~~-----~--~~lYv~GG~~~~~~~l~~ 350 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCR----VGVAVL-----N--GKLYVVGGYDSGSDRLSS 350 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCccccc----ccEEEE-----C--CEEEEEccccCCCcccce
Confidence 4555555555432 12234578999999999999888864431 222221 1 156666555422223458
Q ss_pred EEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeCC------cEEEEEcCCceEeecC-CCCCCCccccccee
Q 046579 207 IEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHG------SSLYFDVDQEKLREMP-MPPIPDEWEERRHQ 279 (416)
Q Consensus 207 ~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~------~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~ 279 (416)
++.|++.+++|.....-... -.....+.++|.+|-+...+ .+-.||+.+++|..+. ++. + .. ..
T Consensus 351 ve~YD~~~~~W~~~a~M~~~---R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~-r~----~~ 421 (571)
T KOG4441|consen 351 VERYDPRTNQWTPVAPMNTK---RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-R-RS----GH 421 (571)
T ss_pred EEEecCCCCceeccCCccCc---cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-c-ee----ee
Confidence 99999999999986432211 13446778999999998764 5899999999999874 332 1 11 12
Q ss_pred EEEEeCCeEEEEEEecCCcCe-EEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCC
Q 046579 280 YFGESRGHLHLIEIYGPCTAL-FNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDD 358 (416)
Q Consensus 280 ~l~~~~G~L~~v~~~~~~~~~-l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (416)
-.++.+|+||++....+.... -.+=..+-....|.....+.... .... +++.
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R--------------------~~~g-~a~~------ 474 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR--------------------SGFG-VAVL------ 474 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc--------------------ccce-EEEE------
Confidence 367889999999876543311 12222332356898776653321 1122 2222
Q ss_pred CcEEEE-ee------CCeEEEEEcCCCcEEEeeecCCCC
Q 046579 359 DSYLVL-HL------PKKAVRYNLKDRTFKKLHDVAPAG 390 (416)
Q Consensus 359 ~~~i~l-~~------~~~l~~ydl~~~~~~~v~~~~~~~ 390 (416)
++.||+ ++ -..+-.||+++++|..+..+..++
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r 513 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR 513 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc
Confidence 334544 32 125788999999999998776654
No 9
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.73 E-value=1.1e-08 Score=67.54 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=33.7
Q ss_pred ccCCHHHHHHHHccCChhhhhhhhcchHhHhhhhcCcc
Q 046579 32 IINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPI 69 (416)
Q Consensus 32 ~~LPddll~eIL~rLP~~~l~r~~~VcK~W~~li~s~~ 69 (416)
..||+|++.+||..||++++.+++.|||+|+.++.++.
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~ 39 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNS 39 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCC
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChh
Confidence 46999999999999999999999999999999998873
No 10
>PHA02713 hypothetical protein; Provisional
Probab=98.72 E-value=1.9e-06 Score=87.90 Aligned_cols=199 Identities=11% Similarity=0.028 Sum_probs=116.5
Q ss_pred eEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceEEEEEECCCCCeeeccCCCcc
Q 046579 147 NYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWRLSGGSFTA 226 (416)
Q Consensus 147 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~ 226 (416)
.+..+||.+++|..+++++.++. ..+++. .+ -+|+.+++..........++.|+..++.|...... +.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~----~~~~a~-l~------~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~~ 340 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII----NYASAI-VD------NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-IK 340 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc----ceEEEE-EC------CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-cc
Confidence 47889999999999988876432 122111 11 24555554321111234789999999999876421 11
Q ss_pred ccccccCCcEEEccEEEEEeeCC------cEEEEEcCCceEeecCCCCCCCcccccceeEEEEeCCeEEEEEEecCCc--
Q 046579 227 PSVINFRGGVFWNGAIHWVSTHG------SSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCT-- 298 (416)
Q Consensus 227 ~~~~~~~~~v~~~G~lyw~~~~~------~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~-- 298 (416)
.-.....+.++|++|-+.+.. .+-+||+.+++|..++..+.+.. . ...+..+|+|+++.......
T Consensus 341 --~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~--~---~~~~~~~g~IYviGG~~~~~~~ 413 (557)
T PHA02713 341 --NRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS--S---YGMCVLDQYIYIIGGRTEHIDY 413 (557)
T ss_pred --hhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc--c---ccEEEECCEEEEEeCCCccccc
Confidence 112346778999999998642 47899999999998643222111 1 12567799999987543210
Q ss_pred ----------------CeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEE
Q 046579 299 ----------------ALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYL 362 (416)
Q Consensus 299 ----------------~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 362 (416)
..-.|...+-....|+....+..+. .......+ ++.+.
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r--------------------~~~~~~~~------~~~IY 467 (557)
T PHA02713 414 TSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT--------------------IRPGVVSH------KDDIY 467 (557)
T ss_pred ccccccccccccccccccceEEEECCCCCeEeecCCCCccc--------------------ccCcEEEE------CCEEE
Confidence 0113455554456797555432111 11112221 23333
Q ss_pred EEeeC-------CeEEEEEcCC-CcEEEeeecCCCC
Q 046579 363 VLHLP-------KKAVRYNLKD-RTFKKLHDVAPAG 390 (416)
Q Consensus 363 ~l~~~-------~~l~~ydl~~-~~~~~v~~~~~~~ 390 (416)
.+++. ..+..||+++ ++|+.+..+..++
T Consensus 468 v~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 468 VVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred EEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 33321 2467999999 8999999876543
No 11
>PLN02153 epithiospecifier protein
Probab=98.71 E-value=1.2e-05 Score=77.31 Aligned_cols=180 Identities=12% Similarity=0.106 Sum_probs=100.4
Q ss_pred eeeCceEEeeecCCCC---CCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCc
Q 046579 128 QSCNGLLLCSSSRAYQ---PRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGH 204 (416)
Q Consensus 128 ~s~~GLvl~~~~~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~ 204 (416)
+..++.|.+..+.... ....++++||.+++|..+|+....+... ..++++..- .=+|+.+...... ...
T Consensus 29 ~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~--~~~~~~~~~-----~~~iyv~GG~~~~-~~~ 100 (341)
T PLN02153 29 AVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRIS--CLGVRMVAV-----GTKLYIFGGRDEK-REF 100 (341)
T ss_pred EEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCc--cCceEEEEE-----CCEEEEECCCCCC-Ccc
Confidence 3445666555443111 1246999999999999988654211111 011111110 1245555443221 122
Q ss_pred eEEEEEECCCCCeeeccCCC--ccccccccCCcEEEccEEEEEeeC------------CcEEEEEcCCceEeecCCCCC-
Q 046579 205 YQIEIYSSKTGPWRLSGGSF--TAPSVINFRGGVFWNGAIHWVSTH------------GSSLYFDVDQEKLREMPMPPI- 269 (416)
Q Consensus 205 ~~~~vyss~t~~W~~~~~~~--~~~~~~~~~~~v~~~G~lyw~~~~------------~~il~fD~~~e~~~~i~~P~~- 269 (416)
..+++|+..+++|+.+.... ..+.......++..+|.+|-+... ..+.+||+.+.+|..++.+..
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~ 180 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGEN 180 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCC
Confidence 36899999999999764210 001111234567788999987652 147899999999998754321
Q ss_pred CCcccccceeEEEEeCCeEEEEEEecC-------C-cCeEEEEEEeCCCCCceEEEE
Q 046579 270 PDEWEERRHQYFGESRGHLHLIEIYGP-------C-TALFNVYEMKTDYSGWFVKYR 318 (416)
Q Consensus 270 ~~~~~~~~~~~l~~~~G~L~~v~~~~~-------~-~~~l~iW~l~~~~~~W~~~~~ 318 (416)
+... ....++..+|+|+++..... . ...-.|++++-...+|+++..
T Consensus 181 ~~~r---~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~ 234 (341)
T PLN02153 181 FEKR---GGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVET 234 (341)
T ss_pred CCCC---CcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccc
Confidence 1111 11125567999998864321 0 011247777765678997754
No 12
>PLN02193 nitrile-specifier protein
Probab=98.66 E-value=2.1e-05 Score=78.87 Aligned_cols=162 Identities=12% Similarity=0.142 Sum_probs=95.1
Q ss_pred ceEEEEccCCcceEecCCCCcCCCcceeeeeEEE-EeCCCCCCCeEEEEEEecCCCCCCceEEEEEECCCCCeeeccCCC
Q 046579 146 RNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNL-AFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWRLSGGSF 224 (416)
Q Consensus 146 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l-~~d~~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~ 224 (416)
..++++||.+++|..+|+....+...+ ...++ .++ =+++.+...... .....+++|+..+++|+.+....
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~--~~~~~v~~~------~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~ 263 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSC--LGVRMVSIG------STLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVE 263 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcc--cceEEEEEC------CEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCC
Confidence 358999999999998876431111000 11111 111 134444443211 12336899999999999874321
Q ss_pred ccccccccCCcEEEccEEEEEeeC------CcEEEEEcCCceEeecCCCCCCCcccccceeEEEEeCCeEEEEEEecCCc
Q 046579 225 TAPSVINFRGGVFWNGAIHWVSTH------GSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCT 298 (416)
Q Consensus 225 ~~~~~~~~~~~v~~~G~lyw~~~~------~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~ 298 (416)
..+........+..++.+|.+... ..+.+||+.+.+|+.++.|...... .....++..+|+++++....+.
T Consensus 264 ~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~--R~~~~~~~~~gkiyviGG~~g~- 340 (470)
T PLN02193 264 EGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSI--RGGAGLEVVQGKVWVVYGFNGC- 340 (470)
T ss_pred CCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCC--CCCcEEEEECCcEEEEECCCCC-
Confidence 111111234466788999988653 2478999999999988654321110 0112355678999988654322
Q ss_pred CeEEEEEEeCCCCCceEEEEE
Q 046579 299 ALFNVYEMKTDYSGWFVKYRV 319 (416)
Q Consensus 299 ~~l~iW~l~~~~~~W~~~~~i 319 (416)
..-+||+++-...+|++...+
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~ 361 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETF 361 (470)
T ss_pred ccCceEEEECCCCEEEEeccC
Confidence 234688888767789876543
No 13
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.59 E-value=3.9e-08 Score=62.79 Aligned_cols=38 Identities=45% Similarity=0.666 Sum_probs=35.8
Q ss_pred CCHHHHHHHHccCChhhhhhhhcchHhHhhhhcCcccc
Q 046579 34 NNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFS 71 (416)
Q Consensus 34 LPddll~eIL~rLP~~~l~r~~~VcK~W~~li~s~~F~ 71 (416)
||+|++.+||.+|+.+++.++++|||+|+.++.++.|-
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 79999999999999999999999999999999988763
No 14
>PHA02790 Kelch-like protein; Provisional
Probab=98.54 E-value=1.7e-05 Score=79.67 Aligned_cols=158 Identities=11% Similarity=0.047 Sum_probs=97.3
Q ss_pred eCceEEeeecCCC-CCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceEEE
Q 046579 130 CNGLLLCSSSRAY-QPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIE 208 (416)
Q Consensus 130 ~~GLvl~~~~~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~~ 208 (416)
.++.|.+.++... .....+..+||.+++|..+|+++.++.. .+.+ ..| -+|..+.+... ...++
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~----~~~v-~~~------~~iYviGG~~~----~~sve 334 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY----ASGV-PAN------NKLYVVGGLPN----PTSVE 334 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc----ceEE-EEC------CEEEEECCcCC----CCceE
Confidence 5566655554311 1224578899999999999998764322 1111 111 24555544321 13689
Q ss_pred EEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeC----CcEEEEEcCCceEeecCCCCCCCcccccceeEEEEe
Q 046579 209 IYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTH----GSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGES 284 (416)
Q Consensus 209 vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~----~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~ 284 (416)
.|+..+++|..... .+. ......++.++|.+|-+.+. ..+.+||+.+++|+.++.++.+... ...+..
T Consensus 335 ~ydp~~n~W~~~~~-l~~--~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-----~~~~~~ 406 (480)
T PHA02790 335 RWFHGDAAWVNMPS-LLK--PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-----SCALVF 406 (480)
T ss_pred EEECCCCeEEECCC-CCC--CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-----ceEEEE
Confidence 99999999997642 221 12344678899999998763 2467899999999987443332211 235678
Q ss_pred CCeEEEEEEecCCcCeEEEEEEeCCCCCceEEEE
Q 046579 285 RGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYR 318 (416)
Q Consensus 285 ~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~~~ 318 (416)
+|+|+++.. ..+++-. ....|+....
T Consensus 407 ~~~IYv~GG------~~e~ydp--~~~~W~~~~~ 432 (480)
T PHA02790 407 GRRLFLVGR------NAEFYCE--SSNTWTLIDD 432 (480)
T ss_pred CCEEEEECC------ceEEecC--CCCcEeEcCC
Confidence 999999852 2344333 3458986543
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.50 E-value=8.3e-05 Score=71.62 Aligned_cols=172 Identities=12% Similarity=0.071 Sum_probs=99.6
Q ss_pred EeeeCceEEeeecCCCCCCceEEEEcc--CCcceEecCCCCc-CCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCC--
Q 046579 127 LQSCNGLLLCSSSRAYQPRRNYYVYNP--TNKQYTILPRLHV-DRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLR-- 201 (416)
Q Consensus 127 ~~s~~GLvl~~~~~~~~~~~~~~V~NP--~T~~~~~LP~~~~-~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~-- 201 (416)
.+..++-|.+..+. ....++++|+ .+++|..+|+++. .+. ..+++ ..| -+|..+.......
T Consensus 13 ~~~~~~~vyv~GG~---~~~~~~~~d~~~~~~~W~~l~~~p~~~R~----~~~~~-~~~------~~iYv~GG~~~~~~~ 78 (346)
T TIGR03547 13 GAIIGDKVYVGLGS---AGTSWYKLDLKKPSKGWQKIADFPGGPRN----QAVAA-AID------GKLYVFGGIGKANSE 78 (346)
T ss_pred EEEECCEEEEEccc---cCCeeEEEECCCCCCCceECCCCCCCCcc----cceEE-EEC------CEEEEEeCCCCCCCC
Confidence 33456666665543 2345788874 7889999998763 222 11211 111 2455555542111
Q ss_pred ---CCceEEEEEECCCCCeeeccCCCccccccccCCcE-EEccEEEEEeeC-----------------------------
Q 046579 202 ---DGHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGV-FWNGAIHWVSTH----------------------------- 248 (416)
Q Consensus 202 ---~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v-~~~G~lyw~~~~----------------------------- 248 (416)
.....++.|+..+++|+.+..+.+.. .....++ .++|.+|-+...
T Consensus 79 ~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~--~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 79 GSPQVFDDVYRYDPKKNSWQKLDTRSPVG--LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred CcceecccEEEEECCCCEEecCCCCCCCc--ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 01236899999999999875322211 1112233 579999988643
Q ss_pred -----------CcEEEEEcCCceEeecC-CCCCCCcccccceeEEEEeCCeEEEEEEecCCc-CeEEEEEEe--CCCCCc
Q 046579 249 -----------GSSLYFDVDQEKLREMP-MPPIPDEWEERRHQYFGESRGHLHLIEIYGPCT-ALFNVYEMK--TDYSGW 313 (416)
Q Consensus 249 -----------~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~-~~l~iW~l~--~~~~~W 313 (416)
..+.+||+.+++|+.+. +|..+. . ...++..+|+|+++....... ...++|..+ .+...|
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r-~----~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGT-A----GSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCCcC-C----CceEEEECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 35789999999999874 232111 1 123567799999997653221 234566554 334579
Q ss_pred eEEEEE
Q 046579 314 FVKYRV 319 (416)
Q Consensus 314 ~~~~~i 319 (416)
+....+
T Consensus 232 ~~~~~m 237 (346)
T TIGR03547 232 NKLPPL 237 (346)
T ss_pred eecCCC
Confidence 876554
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.45 E-value=1.1e-07 Score=63.13 Aligned_cols=40 Identities=40% Similarity=0.548 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHHccCChhhhhhhhcchHhHhhhhcCcccc
Q 046579 32 IINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFS 71 (416)
Q Consensus 32 ~~LPddll~eIL~rLP~~~l~r~~~VcK~W~~li~s~~F~ 71 (416)
..||+|++.+||.+|+++++.+++.|||+|++++.++.+-
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~ 43 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLW 43 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCcc
Confidence 4699999999999999999999999999999999987763
No 17
>PLN02153 epithiospecifier protein
Probab=98.44 E-value=8.5e-05 Score=71.40 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=102.1
Q ss_pred EeeeCceEEeeecCC-CCCCceEEEEccCCcceEecCCCCcCCCc-ceeeeeEEEEeCCCCCCCeEEEEEEecCCCC---
Q 046579 127 LQSCNGLLLCSSSRA-YQPRRNYYVYNPTNKQYTILPRLHVDRGI-FRSIFGVNLAFDPSKSAHYKVICVRNCDSLR--- 201 (416)
Q Consensus 127 ~~s~~GLvl~~~~~~-~~~~~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~--- 201 (416)
+++.+|.|.+..+.. ......++++||.|++|..++++...... .+....++ .++ =|++.+.......
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~------~~iyv~GG~~~~~~~~ 153 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDE------NHVYVFGGVSKGGLMK 153 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EEC------CEEEEECCccCCCccC
Confidence 445566665555431 11234689999999999999865211000 11112211 111 1344444432110
Q ss_pred --CCceEEEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEee--------------CCcEEEEEcCCceEeecC
Q 046579 202 --DGHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVST--------------HGSSLYFDVDQEKLREMP 265 (416)
Q Consensus 202 --~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~--------------~~~il~fD~~~e~~~~i~ 265 (416)
.....+++|+..+++|+.+......+..-.....+.++|.+|-+.. ...+.+||+.+.+|+.++
T Consensus 154 ~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 154 TPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred CCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecc
Confidence 0123689999999999987432111111122345678999987643 135889999999999875
Q ss_pred CC-CCCCcccccceeEEEEeCCeEEEEEEecCC--------cC-eEEEEEEeCCCCCceEEEEE
Q 046579 266 MP-PIPDEWEERRHQYFGESRGHLHLIEIYGPC--------TA-LFNVYEMKTDYSGWFVKYRV 319 (416)
Q Consensus 266 ~P-~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~--------~~-~l~iW~l~~~~~~W~~~~~i 319 (416)
.- ..|... .....+..+++|+++...... .. .-+||+++-....|++....
T Consensus 234 ~~g~~P~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 234 TTGAKPSAR---SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGEC 294 (341)
T ss_pred ccCCCCCCc---ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCC
Confidence 21 111111 111245668999998764210 11 12799999777889876543
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.43 E-value=0.00015 Score=69.07 Aligned_cols=151 Identities=10% Similarity=0.143 Sum_probs=89.6
Q ss_pred eEEEE-ccCCc-ceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceEEEEEECCCCCee----ec
Q 046579 147 NYYVY-NPTNK-QYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWR----LS 220 (416)
Q Consensus 147 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~----~~ 220 (416)
.++++ +|..+ +|..+++++.++.. ... ..++ =+|+.+...... .....++.|+..++.|. ..
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~---~~~--~~~~------~~lyviGG~~~~-~~~~~v~~~d~~~~~w~~~~~~~ 107 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAY---GAS--VSVE------NGIYYIGGSNSS-ERFSSVYRITLDESKEELICETI 107 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccc---eEE--EEEC------CEEEEEcCCCCC-CCceeEEEEEEcCCceeeeeeEc
Confidence 46666 45433 79988877754321 112 1221 135555443221 12347889999999983 32
Q ss_pred cCCCccccccccCCcEEEccEEEEEeeC------CcEEEEEcCCceEeecC-CCCCCCcccccceeEEEEeCCeEEEEEE
Q 046579 221 GGSFTAPSVINFRGGVFWNGAIHWVSTH------GSSLYFDVDQEKLREMP-MPPIPDEWEERRHQYFGESRGHLHLIEI 293 (416)
Q Consensus 221 ~~~~~~~~~~~~~~~v~~~G~lyw~~~~------~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~l~~~~G~L~~v~~ 293 (416)
. +.+. ......++.++|.+|-+... ..+.+||+.+++|+.++ +|..+.. ....+..+++|+++..
T Consensus 108 ~-~lp~--~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~-----~~~~~~~~~~iYv~GG 179 (323)
T TIGR03548 108 G-NLPF--TFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRV-----QPVCVKLQNELYVFGG 179 (323)
T ss_pred C-CCCc--CccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCC-----cceEEEECCEEEEEcC
Confidence 2 2221 22345667889999998753 25889999999999875 4432211 1234577999999876
Q ss_pred ecCCcCeEEEEEEeCCCCCceEEEE
Q 046579 294 YGPCTALFNVYEMKTDYSGWFVKYR 318 (416)
Q Consensus 294 ~~~~~~~l~iW~l~~~~~~W~~~~~ 318 (416)
.... ...++|+.+-...+|.+...
T Consensus 180 ~~~~-~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 180 GSNI-AYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred CCCc-cccceEEEecCCCeeEECCC
Confidence 4321 23456777765678986554
No 19
>PHA03098 kelch-like protein; Provisional
Probab=98.38 E-value=2.6e-05 Score=79.73 Aligned_cols=173 Identities=9% Similarity=0.052 Sum_probs=106.3
Q ss_pred EeeeCceEEeeecCCC-CCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCce
Q 046579 127 LQSCNGLLLCSSSRAY-QPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHY 205 (416)
Q Consensus 127 ~~s~~GLvl~~~~~~~-~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~ 205 (416)
+++.+|-|.+..+... .....+.++||.|++|..+|+++.++.. .+++ .++ + +++.+.+.........
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~----~~~~-~~~----~--~iYv~GG~~~~~~~~~ 406 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN----PCVV-NVN----N--LIYVIGGISKNDELLK 406 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc----ceEE-EEC----C--EEEEECCcCCCCcccc
Confidence 4456777766665421 1234588999999999999887764321 1111 111 1 4554544322211234
Q ss_pred EEEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeCC---------cEEEEEcCCceEeecCCCCCCCccccc
Q 046579 206 QIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHG---------SSLYFDVDQEKLREMPMPPIPDEWEER 276 (416)
Q Consensus 206 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---------~il~fD~~~e~~~~i~~P~~~~~~~~~ 276 (416)
.+++|+..+++|+.... .+. ......++..+|.+|-+.... .+.+||+.+++|+.++..+.+..
T Consensus 407 ~v~~yd~~t~~W~~~~~-~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~---- 479 (534)
T PHA03098 407 TVECFSLNTNKWSKGSP-LPI--SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRI---- 479 (534)
T ss_pred eEEEEeCCCCeeeecCC-CCc--cccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccc----
Confidence 78999999999998642 111 123345778899999886531 38899999999998753222211
Q ss_pred ceeEEEEeCCeEEEEEEecCCcCeEEEEEEeCCCCCceEEEE
Q 046579 277 RHQYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYR 318 (416)
Q Consensus 277 ~~~~l~~~~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~~~ 318 (416)
...++..+|+|+++.........-.|+..+-....|.....
T Consensus 480 -~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 480 -NASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred -cceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 11345669999998654322223357777766678976654
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=98.35 E-value=3.7e-05 Score=77.32 Aligned_cols=163 Identities=9% Similarity=0.073 Sum_probs=101.4
Q ss_pred EEeeeCceEEeeecCCCCCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCce
Q 046579 126 VLQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHY 205 (416)
Q Consensus 126 ~~~s~~GLvl~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~ 205 (416)
..++.+|.|.+..+.. ....+..+||.+++|..+|+++.++.. ...+ .++ =+|..+++.... ..
T Consensus 313 ~~v~~~~~iYviGG~~--~~~sve~ydp~~n~W~~~~~l~~~r~~---~~~~--~~~------g~IYviGG~~~~---~~ 376 (480)
T PHA02790 313 SGVPANNKLYVVGGLP--NPTSVERWFHGDAAWVNMPSLLKPRCN---PAVA--SIN------NVIYVIGGHSET---DT 376 (480)
T ss_pred eEEEECCEEEEECCcC--CCCceEEEECCCCeEEECCCCCCCCcc---cEEE--EEC------CEEEEecCcCCC---Cc
Confidence 3456788887776542 224577899999999999998864321 1111 121 245445443211 23
Q ss_pred EEEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeCCcEEEEEcCCceEeecCCCCCCCcccccceeEEEEeC
Q 046579 206 QIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESR 285 (416)
Q Consensus 206 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~ 285 (416)
.++.|+.++++|+..... +.+ .....++.++|.+|-+.. ..-+||+.+++|+.++-.+.+. ....++..+
T Consensus 377 ~ve~ydp~~~~W~~~~~m-~~~--r~~~~~~~~~~~IYv~GG--~~e~ydp~~~~W~~~~~m~~~r-----~~~~~~v~~ 446 (480)
T PHA02790 377 TTEYLLPNHDQWQFGPST-YYP--HYKSCALVFGRRLFLVGR--NAEFYCESSNTWTLIDDPIYPR-----DNPELIIVD 446 (480)
T ss_pred cEEEEeCCCCEEEeCCCC-CCc--cccceEEEECCEEEEECC--ceEEecCCCCcEeEcCCCCCCc-----cccEEEEEC
Confidence 689999999999986432 111 123456789999998874 4678999999999874222211 112367889
Q ss_pred CeEEEEEEecCCcCeEEEEEEeCCCCCce
Q 046579 286 GHLHLIEIYGPCTALFNVYEMKTDYSGWF 314 (416)
Q Consensus 286 G~L~~v~~~~~~~~~l~iW~l~~~~~~W~ 314 (416)
|+|+++....+....-.|.+.+-...+|+
T Consensus 447 ~~IYviGG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 447 NKLLLIGGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred CEEEEECCcCCCcccceEEEEECCCCeEE
Confidence 99999976542221123455554456785
No 21
>PLN02193 nitrile-specifier protein
Probab=98.31 E-value=0.00021 Score=71.67 Aligned_cols=203 Identities=11% Similarity=0.073 Sum_probs=111.2
Q ss_pred eEEEEccCC----cceEecCCC---CcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCC-CceEEEEEECCCCCee
Q 046579 147 NYYVYNPTN----KQYTILPRL---HVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRD-GHYQIEIYSSKTGPWR 218 (416)
Q Consensus 147 ~~~V~NP~T----~~~~~LP~~---~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~-~~~~~~vyss~t~~W~ 218 (416)
..++++|.+ .+|..+.+. +.++. ...++. ++ -+|+.+........ ....+++|+..+++|.
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~----~h~~~~-~~------~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~ 206 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRC----SHGIAQ-VG------NKIYSFGGEFTPNQPIDKHLYVFDLETRTWS 206 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCcc----ccEEEE-EC------CEEEEECCcCCCCCCeeCcEEEEECCCCEEE
Confidence 368888877 789988653 22221 111111 11 23444444321111 1125899999999999
Q ss_pred eccCCCcccc-ccccCCcEEEccEEEEEeeC------CcEEEEEcCCceEeecCCC-CCCCcccccceeEEEEeCCeEEE
Q 046579 219 LSGGSFTAPS-VINFRGGVFWNGAIHWVSTH------GSSLYFDVDQEKLREMPMP-PIPDEWEERRHQYFGESRGHLHL 290 (416)
Q Consensus 219 ~~~~~~~~~~-~~~~~~~v~~~G~lyw~~~~------~~il~fD~~~e~~~~i~~P-~~~~~~~~~~~~~l~~~~G~L~~ 290 (416)
......+.+. .......+.+++.||-+... ..+.+||+.+.+|+.+... ..|.... ...++..+++|++
T Consensus 207 ~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~---~h~~~~~~~~iYv 283 (470)
T PLN02193 207 ISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS---FHSMAADEENVYV 283 (470)
T ss_pred eCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCcc---ceEEEEECCEEEE
Confidence 7643211111 11223467789999988653 2588999999999987432 1111111 1124567899999
Q ss_pred EEEecCCcCeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEEee----
Q 046579 291 IEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHL---- 366 (416)
Q Consensus 291 v~~~~~~~~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~---- 366 (416)
+.........-.+|+++-...+|....... . .|... .. ..+.+. ++.++++..
T Consensus 284 ~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~--~----~~~~R-----------~~-~~~~~~-----~gkiyviGG~~g~ 340 (470)
T PLN02193 284 FGGVSATARLKTLDSYNIVDKKWFHCSTPG--D----SFSIR-----------GG-AGLEVV-----QGKVWVVYGFNGC 340 (470)
T ss_pred ECCCCCCCCcceEEEEECCCCEEEeCCCCC--C----CCCCC-----------CC-cEEEEE-----CCcEEEEECCCCC
Confidence 876543222345677775567897543210 0 01110 11 112222 233333322
Q ss_pred -CCeEEEEEcCCCcEEEeeec
Q 046579 367 -PKKAVRYNLKDRTFKKLHDV 386 (416)
Q Consensus 367 -~~~l~~ydl~~~~~~~v~~~ 386 (416)
-..+..||+++++|+++..+
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~ 361 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETF 361 (470)
T ss_pred ccCceEEEECCCCEEEEeccC
Confidence 25799999999999998754
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.25 E-value=0.00037 Score=67.93 Aligned_cols=172 Identities=13% Similarity=0.029 Sum_probs=98.0
Q ss_pred EeeeCceEEeeecCCCCCCceEEEEccC--CcceEecCCCCc-CCCcceeeeeEEEEeCCCCCCCeEEEEEEecCC-CC-
Q 046579 127 LQSCNGLLLCSSSRAYQPRRNYYVYNPT--NKQYTILPRLHV-DRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDS-LR- 201 (416)
Q Consensus 127 ~~s~~GLvl~~~~~~~~~~~~~~V~NP~--T~~~~~LP~~~~-~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~-~~- 201 (416)
.+..++-|.+..+. ....++++++- +++|..+|+++. ++. ...++ ..+ =+|+.+..... ..
T Consensus 34 ~~~~~~~iyv~gG~---~~~~~~~~d~~~~~~~W~~l~~~p~~~r~----~~~~v-~~~------~~IYV~GG~~~~~~~ 99 (376)
T PRK14131 34 GAIDNNTVYVGLGS---AGTSWYKLDLNAPSKGWTKIAAFPGGPRE----QAVAA-FID------GKLYVFGGIGKTNSE 99 (376)
T ss_pred EEEECCEEEEEeCC---CCCeEEEEECCCCCCCeEECCcCCCCCcc----cceEE-EEC------CEEEEEcCCCCCCCC
Confidence 44456666665442 23457788775 578999987653 221 11111 111 13444443321 00
Q ss_pred ---CCceEEEEEECCCCCeeeccCCCccccccccCCcEE-EccEEEEEeeC-----------------------------
Q 046579 202 ---DGHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVF-WNGAIHWVSTH----------------------------- 248 (416)
Q Consensus 202 ---~~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~-~~G~lyw~~~~----------------------------- 248 (416)
.....+++|+..+++|+.+....+. ......++. .+|.||-+...
T Consensus 100 ~~~~~~~~v~~YD~~~n~W~~~~~~~p~--~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~ 177 (376)
T PRK14131 100 GSPQVFDDVYKYDPKTNSWQKLDTRSPV--GLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY 177 (376)
T ss_pred CceeEcccEEEEeCCCCEEEeCCCCCCC--cccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence 0123689999999999987532111 111223344 79999998653
Q ss_pred -----------CcEEEEEcCCceEeecC-CCCCCCcccccceeEEEEeCCeEEEEEEecCC-cCeEEEEEEe--CCCCCc
Q 046579 249 -----------GSSLYFDVDQEKLREMP-MPPIPDEWEERRHQYFGESRGHLHLIEIYGPC-TALFNVYEMK--TDYSGW 313 (416)
Q Consensus 249 -----------~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~-~~~l~iW~l~--~~~~~W 313 (416)
..+.+||+.+++|+.+. +|..+ .. ...++..+++|+++...... ....++|.++ ....+|
T Consensus 178 ~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~-~~----~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W 252 (376)
T PRK14131 178 FDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLG-TA----GSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKW 252 (376)
T ss_pred hcCChhhcCcCceEEEEECCCCeeeECCcCCCCC-CC----cceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcce
Confidence 24899999999999874 33211 11 11356679999999764221 2345666554 334689
Q ss_pred eEEEEE
Q 046579 314 FVKYRV 319 (416)
Q Consensus 314 ~~~~~i 319 (416)
.+...+
T Consensus 253 ~~~~~~ 258 (376)
T PRK14131 253 QKLPDL 258 (376)
T ss_pred eecCCC
Confidence 876654
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.82 E-value=0.0019 Score=61.57 Aligned_cols=151 Identities=12% Similarity=0.109 Sum_probs=88.6
Q ss_pred EEeeeCceEEeeecCC-CCCCceEEEEccCCcceEecCCCCc-CCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCC
Q 046579 126 VLQSCNGLLLCSSSRA-YQPRRNYYVYNPTNKQYTILPRLHV-DRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDG 203 (416)
Q Consensus 126 ~~~s~~GLvl~~~~~~-~~~~~~~~V~NP~T~~~~~LP~~~~-~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~ 203 (416)
..+..+|.|.+..+.. ......++++||.|++|..+|+.+. .+.. .. ...++ =+|+.+...... .
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~----~~-~~~~~------~~iYv~GG~~~~--~ 184 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQ----PV-CVKLQ------NELYVFGGGSNI--A 184 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCc----ce-EEEEC------CEEEEEcCCCCc--c
Confidence 3445677777665431 1123569999999999999987543 2211 11 11111 135555443211 1
Q ss_pred ceEEEEEECCCCCeeeccCCC--ccccccccCC-cEEEccEEEEEeeC--------------------------------
Q 046579 204 HYQIEIYSSKTGPWRLSGGSF--TAPSVINFRG-GVFWNGAIHWVSTH-------------------------------- 248 (416)
Q Consensus 204 ~~~~~vyss~t~~W~~~~~~~--~~~~~~~~~~-~v~~~G~lyw~~~~-------------------------------- 248 (416)
...+++|+..+++|+.+.... ..+....... .+..+|.+|-+...
T Consensus 185 ~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (323)
T TIGR03548 185 YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPP 264 (323)
T ss_pred ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCc
Confidence 235689999999999875321 1111111222 33447889887643
Q ss_pred ------CcEEEEEcCCceEeecC-CCCCCCcccccceeEEEEeCCeEEEEEEe
Q 046579 249 ------GSSLYFDVDQEKLREMP-MPPIPDEWEERRHQYFGESRGHLHLIEIY 294 (416)
Q Consensus 249 ------~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~l~~~~G~L~~v~~~ 294 (416)
..+.+||+.+++|+.+. +|..+. ....++..+++|+++...
T Consensus 265 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r-----~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 265 EWYNWNRKILIYNVRTGKWKSIGNSPFFAR-----CGAALLLTGNNIFSINGE 312 (323)
T ss_pred cccCcCceEEEEECCCCeeeEccccccccc-----CchheEEECCEEEEEecc
Confidence 35899999999999885 332111 112367789999998753
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.74 E-value=0.0094 Score=58.08 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=53.3
Q ss_pred eEEEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeCC---------cEEEEEcCCceEeecC-CCCCCCccc
Q 046579 205 YQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHG---------SSLYFDVDQEKLREMP-MPPIPDEWE 274 (416)
Q Consensus 205 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~---------~il~fD~~~e~~~~i~-~P~~~~~~~ 274 (416)
..+++|+..++.|+.... .+.. .......+.+++.||.+.... ....||+++.+|..+. +|.......
T Consensus 189 ~~v~~YD~~t~~W~~~~~-~p~~-~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~ 266 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGE-SPFL-GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSS 266 (376)
T ss_pred ceEEEEECCCCeeeECCc-CCCC-CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCc
Confidence 368999999999998652 1211 112345667899999987531 2345677889998763 443221110
Q ss_pred c--cceeEEEEeCCeEEEEEEe
Q 046579 275 E--RRHQYFGESRGHLHLIEIY 294 (416)
Q Consensus 275 ~--~~~~~l~~~~G~L~~v~~~ 294 (416)
. ......+..+|+|+++...
T Consensus 267 ~~~~~~~~a~~~~~~iyv~GG~ 288 (376)
T PRK14131 267 QEGVAGAFAGYSNGVLLVAGGA 288 (376)
T ss_pred CCccceEeceeECCEEEEeecc
Confidence 0 0111235679999988764
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.33 E-value=0.025 Score=54.40 Aligned_cols=111 Identities=15% Similarity=0.136 Sum_probs=63.2
Q ss_pred eEEEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeCC-------cEEEEEc--CCceEeecC-CCCCCCcc-
Q 046579 205 YQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHG-------SSLYFDV--DQEKLREMP-MPPIPDEW- 273 (416)
Q Consensus 205 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~-------~il~fD~--~~e~~~~i~-~P~~~~~~- 273 (416)
-.+++|+..+++|+.+...... .......+.++|+||-+.... .+..||+ ++.+|+.+. +|......
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~ 245 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFL--GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQ 245 (346)
T ss_pred ceEEEEECCCCceeECccCCCC--cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcc
Confidence 3799999999999987532111 112334567899999886531 2444554 667998763 22211000
Q ss_pred cccceeEEEEeCCeEEEEEEecCC-------------------cCeEEEEEEeCCCCCceEEEEE
Q 046579 274 EERRHQYFGESRGHLHLIEIYGPC-------------------TALFNVYEMKTDYSGWFVKYRV 319 (416)
Q Consensus 274 ~~~~~~~l~~~~G~L~~v~~~~~~-------------------~~~l~iW~l~~~~~~W~~~~~i 319 (416)
........+..+|+|+++...... ....++|..+. ..|+....+
T Consensus 246 ~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~--~~W~~~~~l 308 (346)
T TIGR03547 246 EGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDN--GKWSKVGKL 308 (346)
T ss_pred ccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecC--CcccccCCC
Confidence 000111245679999998764210 01456676663 479866543
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.32 E-value=0.0063 Score=54.25 Aligned_cols=210 Identities=11% Similarity=0.100 Sum_probs=111.4
Q ss_pred CceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEE------ecCCC-CCCceEEEEEECCCCCe
Q 046579 145 RRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVR------NCDSL-RDGHYQIEIYSSKTGPW 217 (416)
Q Consensus 145 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~------~~~~~-~~~~~~~~vyss~t~~W 217 (416)
.-.+.|.|..+-+|.++|+--.+......+..+ |-+.-...||.+. ...++ ....-...-|+.+++.|
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~V-----PyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W 117 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAV-----PYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVW 117 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCcc-----chhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccc
Confidence 456899999999999999843221111001110 0001112233221 22222 22334567899999999
Q ss_pred eeccCCCccccccccCCcEEEccEEEEEeeC--------CcEEEEEcCCceEeecCCCCCCCcccccceeEEEEeCCeEE
Q 046579 218 RLSGGSFTAPSVINFRGGVFWNGAIHWVSTH--------GSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLH 289 (416)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~--------~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~ 289 (416)
+..+..--.+..-....++.++..+|-...- ..+-+||++|.+|+.+..-..|..|.... .-.+.+|.++
T Consensus 118 ~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH--~a~~~~~~MY 195 (392)
T KOG4693|consen 118 KKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFH--TASVIDGMMY 195 (392)
T ss_pred cccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhh--hhhhccceEE
Confidence 9764321111122334566667777766542 25899999999999986543333343211 1334578888
Q ss_pred EEEEecCCc---------CeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCc
Q 046579 290 LIEIYGPCT---------ALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDS 360 (416)
Q Consensus 290 ~v~~~~~~~---------~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (416)
+.....+.. -.=.|-.|+-..+.|..-..-. +.|.-. . .-+...+ ++.
T Consensus 196 iFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~------~~P~GR---------R--SHS~fvY------ng~ 252 (392)
T KOG4693|consen 196 IFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT------MKPGGR---------R--SHSTFVY------NGK 252 (392)
T ss_pred EeccccccCCCccchhhhhcceeEEEeccccccccCCCCC------cCCCcc---------c--ccceEEE------cce
Confidence 876543211 1234555665567786442211 112221 1 1112222 233
Q ss_pred EEEEee--------CCeEEEEEcCCCcEEEee
Q 046579 361 YLVLHL--------PKKAVRYNLKDRTFKKLH 384 (416)
Q Consensus 361 ~i~l~~--------~~~l~~ydl~~~~~~~v~ 384 (416)
+.++.. -+.|+.||++|..|.+|.
T Consensus 253 ~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 253 MYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred EEEecccchhhhhhhcceeecccccchheeee
Confidence 333322 258999999999999987
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.27 E-value=0.0036 Score=55.75 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=73.1
Q ss_pred eEEEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeC---------------CcEEEEEcCCceEeecC-CCC
Q 046579 205 YQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTH---------------GSSLYFDVDQEKLREMP-MPP 268 (416)
Q Consensus 205 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~---------------~~il~fD~~~e~~~~i~-~P~ 268 (416)
..+.+++..|..|+.+...-+.+..-....++.++|.+|-...+ +.|++||++|+.|..-+ .+.
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~ 236 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM 236 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc
Confidence 36788899999999984322222122456677888999987654 15899999999998642 122
Q ss_pred CCCcccccceeEEEEeCCeEEEEEEecC--CcCeEEEEEEeCCCCCceEEEE
Q 046579 269 IPDEWEERRHQYFGESRGHLHLIEIYGP--CTALFNVYEMKTDYSGWFVKYR 318 (416)
Q Consensus 269 ~~~~~~~~~~~~l~~~~G~L~~v~~~~~--~~~~l~iW~l~~~~~~W~~~~~ 318 (416)
.|.+.. .-...+.+|++++...+.+ +..--++|.++--...|+++..
T Consensus 237 ~P~GRR---SHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 237 KPGGRR---SHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred CCCccc---ccceEEEcceEEEecccchhhhhhhcceeecccccchheeeec
Confidence 232221 1124577999999987653 2234578999866677987653
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00029 Score=63.93 Aligned_cols=41 Identities=32% Similarity=0.382 Sum_probs=37.3
Q ss_pred ccccCCHHHHHHHHccCChhhhhhhhcchHhHhhhhcCccc
Q 046579 30 ETIINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIF 70 (416)
Q Consensus 30 ~~~~LPddll~eIL~rLP~~~l~r~~~VcK~W~~li~s~~F 70 (416)
....||||++..||+.||.++|.++..|||+|+++-++.+.
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 35679999999999999999999999999999999887664
No 29
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.02 E-value=0.13 Score=51.80 Aligned_cols=224 Identities=13% Similarity=0.072 Sum_probs=119.7
Q ss_pred eCceEEeeecCCCCCCc--eEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceEE
Q 046579 130 CNGLLLCSSSRAYQPRR--NYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQI 207 (416)
Q Consensus 130 ~~GLvl~~~~~~~~~~~--~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~ 207 (416)
.+-++++.......... .++|+|--++.|............. .+..+.. . + =+++.+............+
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r---~g~~~~~--~--~-~~l~lfGG~~~~~~~~~~l 141 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPR---YGHSLSA--V--G-DKLYLFGGTDKKYRNLNEL 141 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcc---cceeEEE--E--C-CeEEEEccccCCCCChhhe
Confidence 55556655543322233 4999999998888765543321111 1111110 0 1 2333343333211124478
Q ss_pred EEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeC-------CcEEEEEcCCceEeecCCCCC-CCccccccee
Q 046579 208 EIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTH-------GSSLYFDVDQEKLREMPMPPI-PDEWEERRHQ 279 (416)
Q Consensus 208 ~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~-------~~il~fD~~~e~~~~i~~P~~-~~~~~~~~~~ 279 (416)
..|+..|+.|+.....-..+........+.++-++|..... ..+.+||+.+.+|..+..... |.....+
T Consensus 142 ~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH--- 218 (482)
T KOG0379|consen 142 HSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGH--- 218 (482)
T ss_pred EeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCc---
Confidence 99999999999874322222112233344444466655443 258999999999999865432 2211111
Q ss_pred EEEEeCCeEEEEEEec-CCcCeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCC
Q 046579 280 YFGESRGHLHLIEIYG-PCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDD 358 (416)
Q Consensus 280 ~l~~~~G~L~~v~~~~-~~~~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (416)
.++..+++++++.... ++...=++|.|+-....|.+.... .. .|.-. . .+...+. .
T Consensus 219 ~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~--g~----~p~~R-----------~-~h~~~~~-----~ 275 (482)
T KOG0379|consen 219 AMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTG--GD----LPSPR-----------S-GHSLTVS-----G 275 (482)
T ss_pred eEEEECCeEEEEeccccCCceecceEeeecccceeeecccc--CC----CCCCc-----------c-eeeeEEE-----C
Confidence 2556688888876544 333345789999766566633321 11 12111 1 1112121 1
Q ss_pred CcEEEEee--------CCeEEEEEcCCCcEEEeeecC
Q 046579 359 DSYLVLHL--------PKKAVRYNLKDRTFKKLHDVA 387 (416)
Q Consensus 359 ~~~i~l~~--------~~~l~~ydl~~~~~~~v~~~~ 387 (416)
..+++++. -..++.+|+.++.|.++....
T Consensus 276 ~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 276 DHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred CEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 33344421 246889999999999998654
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.89 E-value=0.24 Score=49.86 Aligned_cols=185 Identities=13% Similarity=0.128 Sum_probs=102.5
Q ss_pred eEEEeeeCceEEeeecCC-CCCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCC
Q 046579 124 IKVLQSCNGLLLCSSSRA-YQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRD 202 (416)
Q Consensus 124 ~~~~~s~~GLvl~~~~~~-~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~ 202 (416)
..+++..+.|+++..... ......++.+|+.|++|..+.+....+... ..+.+ .++ + =||+.+.......+
T Consensus 116 ~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r-~~Hs~-~~~-----g-~~l~vfGG~~~~~~ 187 (482)
T KOG0379|consen 116 HSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR-AGHSA-TVV-----G-TKLVVFGGIGGTGD 187 (482)
T ss_pred eeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc-ccceE-EEE-----C-CEEEEECCccCccc
Confidence 444555566666665432 222346999999999999986544311111 11221 111 2 23444444433333
Q ss_pred CceEEEEEECCCCCeeeccCCCccccccccCCc-EEEccEEEEEeeCC-------cEEEEEcCCceEeecC-CCCCCCcc
Q 046579 203 GHYQIEIYSSKTGPWRLSGGSFTAPSVINFRGG-VFWNGAIHWVSTHG-------SSLYFDVDQEKLREMP-MPPIPDEW 273 (416)
Q Consensus 203 ~~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~-v~~~G~lyw~~~~~-------~il~fD~~~e~~~~i~-~P~~~~~~ 273 (416)
..-.+.+|+..+.+|..+...-+.+ ......+ +.+++.++-+...+ .+..||+.+.+|..+. ....|...
T Consensus 188 ~~ndl~i~d~~~~~W~~~~~~g~~P-~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R 266 (482)
T KOG0379|consen 188 SLNDLHIYDLETSTWSELDTQGEAP-SPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR 266 (482)
T ss_pred ceeeeeeeccccccceecccCCCCC-CCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc
Confidence 4557999999999999885432222 1233444 44444444443322 4799999999998432 11111111
Q ss_pred cccceeEEEEeCCeEEEEEEecCC--cCeEEEEEEeCCCCCceEEEEEc
Q 046579 274 EERRHQYFGESRGHLHLIEIYGPC--TALFNVYEMKTDYSGWFVKYRVD 320 (416)
Q Consensus 274 ~~~~~~~l~~~~G~L~~v~~~~~~--~~~l~iW~l~~~~~~W~~~~~i~ 320 (416)
. . -.++..+.++.++...... ...-++|.|+.....|.+.....
T Consensus 267 ~--~-h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 267 S--G-HSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred c--e-eeeEEECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 0 1 1244556667776543321 13557888887677899888765
No 31
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=96.84 E-value=0.0083 Score=48.94 Aligned_cols=84 Identities=25% Similarity=0.355 Sum_probs=61.0
Q ss_pred EEeeCCcEEEEEcCCc--eEeecCCCCCCCcc--------cccceeEEEEeCCeEEEEEEecC-------CcCeEEEEEE
Q 046579 244 WVSTHGSSLYFDVDQE--KLREMPMPPIPDEW--------EERRHQYFGESRGHLHLIEIYGP-------CTALFNVYEM 306 (416)
Q Consensus 244 w~~~~~~il~fD~~~e--~~~~i~~P~~~~~~--------~~~~~~~l~~~~G~L~~v~~~~~-------~~~~l~iW~l 306 (416)
|+.-...||.+|+-.+ .++.|++|...... .....+.++..+|+|.+|.+... ....+.+|.|
T Consensus 1 WVDl~~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl 80 (131)
T PF07762_consen 1 WVDLWRGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTL 80 (131)
T ss_pred CCcCCCCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEe
Confidence 3334457888998765 67778888653211 11345678889999999998754 2357999999
Q ss_pred eC---CCCCceEEEEEcccccccc
Q 046579 307 KT---DYSGWFVKYRVDLGGVTYV 327 (416)
Q Consensus 307 ~~---~~~~W~~~~~i~~~~l~~~ 327 (416)
.. +...|.+.+++++..+...
T Consensus 81 ~~~~~~~~~W~~d~~v~~~diw~~ 104 (131)
T PF07762_consen 81 KDPEGSSWEWKKDCEVDLSDIWAD 104 (131)
T ss_pred ccCCCCCCCEEEeEEEEhhhccCC
Confidence 98 3578999999999887764
No 32
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.27 E-value=0.23 Score=47.31 Aligned_cols=204 Identities=14% Similarity=0.200 Sum_probs=107.4
Q ss_pred ceEEEEccCCcceEec--CCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCC------CCCceEEEEEECCCCCe
Q 046579 146 RNYYVYNPTNKQYTIL--PRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSL------RDGHYQIEIYSSKTGPW 217 (416)
Q Consensus 146 ~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~------~~~~~~~~vyss~t~~W 217 (416)
+.+|++|--+.+|+.+ |..+.++.. ...+.-|+ + ++.+.+.+.. ....--.-+|+..+++|
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRss------hq~va~~s--~---~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkw 166 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSS------HQAVAVPS--N---ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKW 166 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCcc------ceeEEecc--C---eEEEeccccCCcchhhhhhhhheeeeeeccchh
Confidence 4589999999999987 444433321 11122222 2 2222221111 11222467899999999
Q ss_pred eeccCCC-ccccccccCCcEEEccEEEEE------eeC----CcEEEEEcCCceEeecCCCCC-CCcccccceeEEEEe-
Q 046579 218 RLSGGSF-TAPSVINFRGGVFWNGAIHWV------STH----GSSLYFDVDQEKLREMPMPPI-PDEWEERRHQYFGES- 284 (416)
Q Consensus 218 ~~~~~~~-~~~~~~~~~~~v~~~G~lyw~------~~~----~~il~fD~~~e~~~~i~~P~~-~~~~~~~~~~~l~~~- 284 (416)
..+..+- +.+ -...+.|.....|.-. ..+ ..+.+||+.+=+|+.+..+.. |... ...++.+.
T Consensus 167 eql~~~g~PS~--RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpR---SGcq~~vtp 241 (521)
T KOG1230|consen 167 EQLEFGGGPSP--RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPR---SGCQFSVTP 241 (521)
T ss_pred eeeccCCCCCC--CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCC---CcceEEecC
Confidence 9884311 111 1223333333322211 111 258999999999999866431 2211 11245555
Q ss_pred CCeEEEEEEecCC---------cCeEEEEEEeCCC---C--CceEEEEEcccccccccccchhccCCCCCCceeeeEEEE
Q 046579 285 RGHLHLIEIYGPC---------TALFNVYEMKTDY---S--GWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILC 350 (416)
Q Consensus 285 ~G~L~~v~~~~~~---------~~~l~iW~l~~~~---~--~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 350 (416)
+|.+++-..+... ..+-++|.|+-.. . .|.++..+.+.. .-. ..+. ++
T Consensus 242 qg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP------spR-----------sgfs-v~ 303 (521)
T KOG1230|consen 242 QGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP------SPR-----------SGFS-VA 303 (521)
T ss_pred CCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC------CCC-----------Ccee-EE
Confidence 8888877665321 1456899998532 1 466666655432 111 1122 22
Q ss_pred eecCCCCCCcEEEEe---------------eCCeEEEEEcCCCcEEEeeecCC
Q 046579 351 VVREENDDDSYLVLH---------------LPKKAVRYNLKDRTFKKLHDVAP 388 (416)
Q Consensus 351 ~~~~~~~~~~~i~l~---------------~~~~l~~ydl~~~~~~~v~~~~~ 388 (416)
++. ++..+++. .-+.|++||+..++|.+-. +.+
T Consensus 304 va~----n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q-lq~ 351 (521)
T KOG1230|consen 304 VAK----NHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ-LQG 351 (521)
T ss_pred Eec----CCceEEecceecccccchhhhhhhhhhhhheecccchhhHhh-hcc
Confidence 322 12233331 1258999999999998764 444
No 33
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.72 E-value=0.0046 Score=56.51 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=36.4
Q ss_pred cccCCHHHHHHHHccCC-----hhhhhhhhcchHhHhhhhcCcccc
Q 046579 31 TIINNDDLLTEILLCLP-----IKSLLKFKAVSKHWLSLISNPIFS 71 (416)
Q Consensus 31 ~~~LPddll~eIL~rLP-----~~~l~r~~~VcK~W~~li~s~~F~ 71 (416)
...||||+|.+||.++= +.+|.++.+|||.|+-..++|.|-
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lw 152 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELW 152 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHH
Confidence 35799999999998754 589999999999999999999975
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.45 E-value=0.0097 Score=54.89 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=35.9
Q ss_pred cCC----HHHHHHHHccCChhhhhhhhcchHhHhhhhcCccc
Q 046579 33 INN----DDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIF 70 (416)
Q Consensus 33 ~LP----ddll~eIL~rLP~~~l~r~~~VcK~W~~li~s~~F 70 (416)
.|| +++.+.||+.|...+|..|..|||+|+++++++..
T Consensus 77 ~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 77 ALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML 118 (499)
T ss_pred hcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence 589 99999999999999999999999999999999864
No 35
>PF13964 Kelch_6: Kelch motif
Probab=94.87 E-value=0.089 Score=34.65 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=28.4
Q ss_pred eeeCceEEeeecCCC--CCCceEEEEccCCcceEecCCCCcC
Q 046579 128 QSCNGLLLCSSSRAY--QPRRNYYVYNPTNKQYTILPRLHVD 167 (416)
Q Consensus 128 ~s~~GLvl~~~~~~~--~~~~~~~V~NP~T~~~~~LP~~~~~ 167 (416)
++.+|-|.+..+... .....++++||.|++|..+|+++.+
T Consensus 8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 445666666654322 2346699999999999999988753
No 36
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.61 E-value=3.1 Score=37.05 Aligned_cols=106 Identities=15% Similarity=0.050 Sum_probs=56.7
Q ss_pred eCceEEeeecCCCCCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceEEEE
Q 046579 130 CNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEI 209 (416)
Q Consensus 130 ~~GLvl~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~~v 209 (416)
.+|.|++.. ....++.+|+.|++...--..+.... . . .+.. .-+|+...... .+..
T Consensus 35 ~~~~v~~~~-----~~~~l~~~d~~tG~~~W~~~~~~~~~-~---~--~~~~------~~~v~v~~~~~-------~l~~ 90 (238)
T PF13360_consen 35 DGGRVYVAS-----GDGNLYALDAKTGKVLWRFDLPGPIS-G---A--PVVD------GGRVYVGTSDG-------SLYA 90 (238)
T ss_dssp ETTEEEEEE-----TTSEEEEEETTTSEEEEEEECSSCGG-S---G--EEEE------TTEEEEEETTS-------EEEE
T ss_pred eCCEEEEEc-----CCCEEEEEECCCCCEEEEeecccccc-c---e--eeec------cccccccccee-------eeEe
Confidence 677777774 36779999999999764333322100 0 1 0111 12222222111 6777
Q ss_pred EECCCC--Ceee-ccCCCccccccccCCcEEEccEEEEEeeCCcEEEEEcCCce
Q 046579 210 YSSKTG--PWRL-SGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVDQEK 260 (416)
Q Consensus 210 yss~t~--~W~~-~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~il~fD~~~e~ 260 (416)
++..++ .|+. ........ ..........++.+|.....+.|.++|+.+.+
T Consensus 91 ~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 91 LDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp EETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTE
T ss_pred cccCCcceeeeeccccccccc-cccccCceEecCEEEEEeccCcEEEEecCCCc
Confidence 776666 4984 32211111 11222333446677777778899999988643
No 37
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=94.27 E-value=0.42 Score=45.63 Aligned_cols=109 Identities=14% Similarity=0.176 Sum_probs=69.2
Q ss_pred EEEEEECCCCCeeeccCCCccccccccCCcEEE-ccEEEEEeeC------------CcEEEEEcCCceEeecCCCCCCCc
Q 046579 206 QIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFW-NGAIHWVSTH------------GSSLYFDVDQEKLREMPMPPIPDE 272 (416)
Q Consensus 206 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~-~G~lyw~~~~------------~~il~fD~~~e~~~~i~~P~~~~~ 272 (416)
.+.+|+.+++.|+.+..+...+ .-....+|.+ .|.+|..... ..+-.||+.+.+|..+.++..|..
T Consensus 99 dLy~Yn~k~~eWkk~~spn~P~-pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 99 DLYSYNTKKNEWKKVVSPNAPP-PRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeEEeccccceeEeccCCCcC-CCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 5688999999999875433222 1123344444 4655544432 147899999999999999876654
Q ss_pred ccccceeEEEEeCCeEEEEEEecCCc-C---eEEEEEEeCCCCCceEEEE
Q 046579 273 WEERRHQYFGESRGHLHLIEIYGPCT-A---LFNVYEMKTDYSGWFVKYR 318 (416)
Q Consensus 273 ~~~~~~~~l~~~~G~L~~v~~~~~~~-~---~l~iW~l~~~~~~W~~~~~ 318 (416)
..+. .++....+|.++....... . -=+||+++-+.=.|++...
T Consensus 178 RSGH---RMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 178 RSGH---RMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred Cccc---eeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 3332 2667777888877654322 1 1267777765557987765
No 38
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.44 E-value=11 Score=34.36 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=57.1
Q ss_pred ccccCCcEEEccEEEEEee-CCcEEEEEcCCceEe-ecCCCCCCCc------ccccceeEEEEeCCeEEEEEEecCCcCe
Q 046579 229 VINFRGGVFWNGAIHWVST-HGSSLYFDVDQEKLR-EMPMPPIPDE------WEERRHQYFGESRGHLHLIEIYGPCTAL 300 (416)
Q Consensus 229 ~~~~~~~v~~~G~lyw~~~-~~~il~fD~~~e~~~-~i~~P~~~~~------~~~~~~~~l~~~~G~L~~v~~~~~~~~~ 300 (416)
.......|..||.||+... +..|+.||+.++.-. ...+|..... +.......+++.+..|.++-....+...
T Consensus 68 ~~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ 147 (250)
T PF02191_consen 68 PWQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN 147 (250)
T ss_pred eeccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence 4466778889999999776 468999999998887 6667654221 1122344677777778888776554456
Q ss_pred EEEEEEeCC
Q 046579 301 FNVYEMKTD 309 (416)
Q Consensus 301 l~iW~l~~~ 309 (416)
|.|=+|+..
T Consensus 148 ivvskld~~ 156 (250)
T PF02191_consen 148 IVVSKLDPE 156 (250)
T ss_pred EEEEeeCcc
Confidence 888888864
No 39
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.35 E-value=15 Score=35.83 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=25.4
Q ss_pred CCcEEEccEEEEEeeCCcEEEEEcCCc--eEee
Q 046579 233 RGGVFWNGAIHWVSTHGSSLYFDVDQE--KLRE 263 (416)
Q Consensus 233 ~~~v~~~G~lyw~~~~~~il~fD~~~e--~~~~ 263 (416)
..++..+|.+|....++.+.++|+.+. .|..
T Consensus 250 ~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 250 TTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 567788999999888889999999764 5654
No 40
>PF13964 Kelch_6: Kelch motif
Probab=91.23 E-value=0.56 Score=30.72 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=27.4
Q ss_pred CCcEEEccEEEEEeeCC-------cEEEEEcCCceEeecC
Q 046579 233 RGGVFWNGAIHWVSTHG-------SSLYFDVDQEKLREMP 265 (416)
Q Consensus 233 ~~~v~~~G~lyw~~~~~-------~il~fD~~~e~~~~i~ 265 (416)
...|.++|.||.+.... .+..||+.+++|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 45788999999987653 5899999999999874
No 41
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=89.92 E-value=14 Score=35.38 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=69.3
Q ss_pred ccEEEEEeeCCcEEEEEcCCceEeecCCCCCCCcccccceeEEEEeCCeEEEEEEecCCcC-------eEEEEEEeC---
Q 046579 239 NGAIHWVSTHGSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTA-------LFNVYEMKT--- 308 (416)
Q Consensus 239 ~G~lyw~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~~-------~l~iW~l~~--- 308 (416)
+.++..+...+..+.||+++......|....+.. .......+|+||++........ .+++-....
T Consensus 76 gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~-----~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~ 150 (342)
T PF07893_consen 76 GSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKR-----CPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPD 150 (342)
T ss_pred CCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCc-----ceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccc
Confidence 4455555556678999999888774433222211 1223344888998876533211 555554431
Q ss_pred ---CCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEEeeCC---eEEEEEcCCCcEEE
Q 046579 309 ---DYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHLPK---KAVRYNLKDRTFKK 382 (416)
Q Consensus 309 ---~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~---~l~~ydl~~~~~~~ 382 (416)
..+.|.-.. ++.+ |... +..... ..+.-.+++ +|..|++...+ .-++||..+.+|++
T Consensus 151 ~~~~~~~w~W~~-LP~P------Pf~~----~~~~~~-~~i~sYavv-----~g~~I~vS~~~~~~GTysfDt~~~~W~~ 213 (342)
T PF07893_consen 151 DPSPEESWSWRS-LPPP------PFVR----DRRYSD-YRITSYAVV-----DGRTIFVSVNGRRWGTYSFDTESHEWRK 213 (342)
T ss_pred cccCCCcceEEc-CCCC------Cccc----cCCccc-ceEEEEEEe-----cCCeEEEEecCCceEEEEEEcCCcceee
Confidence 234566544 2211 2111 000000 012333333 36689996654 69999999999999
Q ss_pred eeec
Q 046579 383 LHDV 386 (416)
Q Consensus 383 v~~~ 386 (416)
+.+.
T Consensus 214 ~GdW 217 (342)
T PF07893_consen 214 HGDW 217 (342)
T ss_pred ccce
Confidence 9875
No 42
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=88.62 E-value=12 Score=33.40 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=25.3
Q ss_pred EEccEEEEEeeCCcEEEEEcCCceEeecCCCCC
Q 046579 237 FWNGAIHWVSTHGSSLYFDVDQEKLREMPMPPI 269 (416)
Q Consensus 237 ~~~G~lyw~~~~~~il~fD~~~e~~~~i~~P~~ 269 (416)
.+||-+ ++.....++.+|+.|.++..++.|+.
T Consensus 3 sCnGLl-c~~~~~~~~V~NP~T~~~~~LP~~~~ 34 (230)
T TIGR01640 3 PCDGLI-CFSYGKRLVVWNPSTGQSRWLPTPKS 34 (230)
T ss_pred ccceEE-EEecCCcEEEECCCCCCEEecCCCCC
Confidence 478888 55555789999999999999876654
No 43
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=87.73 E-value=29 Score=33.88 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=35.2
Q ss_pred EEEEEECCCC--CeeeccCCCccccccccCCcEEEccEEEEEeeCCcEEEEEcCCc--eEee
Q 046579 206 QIEIYSSKTG--PWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVDQE--KLRE 263 (416)
Q Consensus 206 ~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~il~fD~~~e--~~~~ 263 (416)
.+..++.+|+ .|+..... .....++..+|.+|....++.+.+||.++. .|+.
T Consensus 131 ~l~ald~~tG~~~W~~~~~~------~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 131 QVYALNAEDGEVAWQTKVAG------EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred EEEEEECCCCCCcccccCCC------ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 5666776555 59864211 123556778999998887888999999764 4654
No 44
>smart00284 OLF Olfactomedin-like domains.
Probab=85.86 E-value=27 Score=31.78 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=56.4
Q ss_pred ccccCCcEEEccEEEEEee-CCcEEEEEcCCceEeec-CCCCC------CCcccccceeEEEEeCCeEEEEEEecCCcCe
Q 046579 229 VINFRGGVFWNGAIHWVST-HGSSLYFDVDQEKLREM-PMPPI------PDEWEERRHQYFGESRGHLHLIEIYGPCTAL 300 (416)
Q Consensus 229 ~~~~~~~v~~~G~lyw~~~-~~~il~fD~~~e~~~~i-~~P~~------~~~~~~~~~~~l~~~~G~L~~v~~~~~~~~~ 300 (416)
.......|..||.||+... +..|+-||+.+++.... .+|.. +-.+.......|++.+..|.++-....+...
T Consensus 73 ~~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ 152 (255)
T smart00284 73 AGQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGK 152 (255)
T ss_pred ccccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCC
Confidence 3466778999999999654 35799999999988533 35532 1112223345688888889988776655578
Q ss_pred EEEEEEeCC
Q 046579 301 FNVYEMKTD 309 (416)
Q Consensus 301 l~iW~l~~~ 309 (416)
|.|=+|+..
T Consensus 153 ivvSkLnp~ 161 (255)
T smart00284 153 IVISKLNPA 161 (255)
T ss_pred EEEEeeCcc
Confidence 989999864
No 45
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=85.72 E-value=0.88 Score=29.16 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=26.6
Q ss_pred EeeeCceEEeeecCCC--CCCceEEEEccCCcceEecCCCC
Q 046579 127 LQSCNGLLLCSSSRAY--QPRRNYYVYNPTNKQYTILPRLH 165 (416)
Q Consensus 127 ~~s~~GLvl~~~~~~~--~~~~~~~V~NP~T~~~~~LP~~~ 165 (416)
+++.+|.|.+..+... .....++++||.|++|..+|+++
T Consensus 7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 4455666665554322 23456999999999999998754
No 46
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.64 E-value=15 Score=36.44 Aligned_cols=63 Identities=17% Similarity=0.344 Sum_probs=36.2
Q ss_pred ceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceEEEEEECCCCCee
Q 046579 146 RNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWR 218 (416)
Q Consensus 146 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~ 218 (416)
.++.|+|..|+||. +|.-..+- .....+++|.+|. -|++.+...-. -+.+.=+.|.+...+|.
T Consensus 57 DELHvYNTatnqWf-~PavrGDi--PpgcAA~GfvcdG-----trilvFGGMvE--YGkYsNdLYELQasRWe 119 (830)
T KOG4152|consen 57 DELHVYNTATNQWF-APAVRGDI--PPGCAAFGFVCDG-----TRILVFGGMVE--YGKYSNDLYELQASRWE 119 (830)
T ss_pred hhhhhhccccceee-cchhcCCC--CCchhhcceEecC-----ceEEEEccEee--eccccchHHHhhhhhhh
Confidence 46899999999997 44332210 1113456666653 35555543221 02456678888877664
No 47
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=84.83 E-value=2.4 Score=27.56 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=27.1
Q ss_pred CCcEEEccEEEEEeeC---------CcEEEEEcCCceEeecCC
Q 046579 233 RGGVFWNGAIHWVSTH---------GSSLYFDVDQEKLREMPM 266 (416)
Q Consensus 233 ~~~v~~~G~lyw~~~~---------~~il~fD~~~e~~~~i~~ 266 (416)
...+..+|+||.+... ..+-.||+.+.+|..++.
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 4567889999988765 147899999999998754
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=84.09 E-value=0.71 Score=44.45 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHccCChhhhhhhhcchHhHhhhhcCcc
Q 046579 33 INNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPI 69 (416)
Q Consensus 33 ~LPddll~eIL~rLP~~~l~r~~~VcK~W~~li~s~~ 69 (416)
.||.+++..||+-|..++++|++.+|+.|+-+..+-.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 6999999999999999999999999999998877654
No 49
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=83.58 E-value=43 Score=32.11 Aligned_cols=154 Identities=18% Similarity=0.262 Sum_probs=80.4
Q ss_pred eEEEeeeCceEEeeecCCCCCCceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCC-
Q 046579 124 IKVLQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRD- 202 (416)
Q Consensus 124 ~~~~~s~~GLvl~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~- 202 (416)
....+-.+.-|++... ....+|+++.|+....+|.+..+.. ..+.+.. ++. |+.+........
T Consensus 69 ~~F~al~gskIv~~d~-----~~~t~vyDt~t~av~~~P~l~~pk~-----~pisv~V----G~~--LY~m~~~~~~~~~ 132 (342)
T PF07893_consen 69 MDFFALHGSKIVAVDQ-----SGRTLVYDTDTRAVATGPRLHSPKR-----CPISVSV----GDK--LYAMDRSPFPEPA 132 (342)
T ss_pred eEEEEecCCeEEEEcC-----CCCeEEEECCCCeEeccCCCCCCCc-----ceEEEEe----CCe--EEEeeccCccccc
Confidence 3344445556666653 3568999999999999999765322 1122221 122 554544322211
Q ss_pred C---ceEEEEE--E------CCCC--CeeeccCCCcccccc------ccCCcEEEccEEEEEeeCC---cEEEEEcCCce
Q 046579 203 G---HYQIEIY--S------SKTG--PWRLSGGSFTAPSVI------NFRGGVFWNGAIHWVSTHG---SSLYFDVDQEK 260 (416)
Q Consensus 203 ~---~~~~~vy--s------s~t~--~W~~~~~~~~~~~~~------~~~~~v~~~G~lyw~~~~~---~il~fD~~~e~ 260 (416)
. ...+|++ . .... .|+....+ ++.... ...-+|. +|.--|++..+ .-.+||+.+.+
T Consensus 133 ~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P-Pf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~ 210 (342)
T PF07893_consen 133 GRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP-PFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHE 210 (342)
T ss_pred cCccceeEEEeccccccccccCCCcceEEcCCCC-CccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcc
Confidence 0 0144454 3 2233 45554321 222111 2233555 88877885553 58999999999
Q ss_pred Eeec---CCCCCCC-cccccceeEEEEe--C--CeEEEEEEec
Q 046579 261 LREM---PMPPIPD-EWEERRHQYFGES--R--GHLHLIEIYG 295 (416)
Q Consensus 261 ~~~i---~~P~~~~-~~~~~~~~~l~~~--~--G~L~~v~~~~ 295 (416)
|+.. .+|.... .+.......++-+ + +.||.+....
T Consensus 211 W~~~GdW~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~ 253 (342)
T PF07893_consen 211 WRKHGDWMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSS 253 (342)
T ss_pred eeeccceecCcCCccEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence 9986 5664321 1211122234433 2 3777766543
No 50
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=82.82 E-value=2 Score=27.80 Aligned_cols=21 Identities=14% Similarity=0.488 Sum_probs=14.1
Q ss_pred CceEEEEccCCcceEecCCCC
Q 046579 145 RRNYYVYNPTNKQYTILPRLH 165 (416)
Q Consensus 145 ~~~~~V~NP~T~~~~~LP~~~ 165 (416)
...++++|+.|++|.++|++|
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 346899999999999997765
No 51
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=81.91 E-value=38 Score=32.39 Aligned_cols=124 Identities=14% Similarity=0.210 Sum_probs=72.2
Q ss_pred ccEEEEEeeC--CcEEEEEcCCce--Eee---cCCCCCCCcccccceeEEEEe-CCeEEEEEEecCCcCeEEEEEEeCCC
Q 046579 239 NGAIHWVSTH--GSSLYFDVDQEK--LRE---MPMPPIPDEWEERRHQYFGES-RGHLHLIEIYGPCTALFNVYEMKTDY 310 (416)
Q Consensus 239 ~G~lyw~~~~--~~il~fD~~~e~--~~~---i~~P~~~~~~~~~~~~~l~~~-~G~L~~v~~~~~~~~~l~iW~l~~~~ 310 (416)
+|..-|+.+. +.|..|++..+. +.. +.+|... .. +.+... +|+..++... ....+.++.++...
T Consensus 154 dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~----GP--Rh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 154 DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS----GP--RHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSD 225 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS----SE--EEEEE-TTSSEEEEEET--TTTEEEEEEEETTT
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC----CC--cEEEEcCCcCEEEEecC--CCCcEEEEeecccC
Confidence 5665566554 478888887655 433 4454421 11 223333 6666555432 23689999999656
Q ss_pred CCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEEe--eCCeEEEEEc--CCCcEEEeeec
Q 046579 311 SGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLH--LPKKAVRYNL--KDRTFKKLHDV 386 (416)
Q Consensus 311 ~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~--~~~~l~~ydl--~~~~~~~v~~~ 386 (416)
+.+....++....- .+.. . ....-+.+.+ ++.+||+. ..+.+.+|++ .+++++.+..+
T Consensus 226 g~~~~~~~~~~~~~--~~~~--------~----~~~~~i~isp----dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 226 GSLTEIQTISTLPE--GFTG--------E----NAPAEIAISP----DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp TEEEEEEEEESCET--TSCS--------S----SSEEEEEE-T----TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE
T ss_pred CceeEEEEeeeccc--cccc--------c----CCceeEEEec----CCCEEEEEeccCCEEEEEEEecCCCceEEEEEE
Confidence 67888887754321 0000 0 1233455543 57888885 4678999998 46788888876
Q ss_pred CC
Q 046579 387 AP 388 (416)
Q Consensus 387 ~~ 388 (416)
..
T Consensus 288 ~~ 289 (345)
T PF10282_consen 288 PT 289 (345)
T ss_dssp EE
T ss_pred eC
Confidence 54
No 52
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=81.35 E-value=53 Score=31.65 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=35.0
Q ss_pred EEEEEECCCC--CeeeccCCCccccccccCCcEEEccEEEEEeeCCcEEEEEcCCc--eEe
Q 046579 206 QIEIYSSKTG--PWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVDQE--KLR 262 (416)
Q Consensus 206 ~~~vyss~t~--~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~il~fD~~~e--~~~ 262 (416)
.+..++..++ .|+......... ......++..+|.+|.-...+.+.++|+.+. .|+
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~~-~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPALT-LRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCcee-ecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeee
Confidence 5677777666 487542211111 0123456778888887777789999998764 464
No 53
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=80.74 E-value=5 Score=26.00 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=19.5
Q ss_pred CceEEEEccCCcceEecCCCCcCC
Q 046579 145 RRNYYVYNPTNKQYTILPRLHVDR 168 (416)
Q Consensus 145 ~~~~~V~NP~T~~~~~LP~~~~~~ 168 (416)
...++++|+.|++|..++..+.++
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCc
Confidence 355999999999999997766544
No 54
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=79.87 E-value=59 Score=31.28 Aligned_cols=123 Identities=14% Similarity=0.180 Sum_probs=68.6
Q ss_pred EEccEEEEEeeCCcEEEEEcCC------ceEeecCCCCCCCcccccceeEEEEe--CCeEEEEEEecC----CcCeEEEE
Q 046579 237 FWNGAIHWVSTHGSSLYFDVDQ------EKLREMPMPPIPDEWEERRHQYFGES--RGHLHLIEIYGP----CTALFNVY 304 (416)
Q Consensus 237 ~~~G~lyw~~~~~~il~fD~~~------e~~~~i~~P~~~~~~~~~~~~~l~~~--~G~L~~v~~~~~----~~~~l~iW 304 (416)
-.+|..+|.+..+.|...|+++ +.|..+..-.....+.......++.. +++|+++..... ....=+||
T Consensus 203 ~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 203 NKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred cCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 3479999999999999999644 23444432211122221111113333 455555332111 01123788
Q ss_pred EEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCc-EEEEe--eCCeEEEEEcCCCc-E
Q 046579 305 EMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDS-YLVLH--LPKKAVRYNLKDRT-F 380 (416)
Q Consensus 305 ~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~l~--~~~~l~~ydl~~~~-~ 380 (416)
+++- .++....+|.++. ...-+++.+ ++. .+|.. .++.+.++|..+++ +
T Consensus 283 ViD~--~t~kvi~~i~vG~---------------------~~~~iavS~----Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 283 VVDA--KTGKRLRKIELGH---------------------EIDSINVSQ----DAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred EEEC--CCCeEEEEEeCCC---------------------ceeeEEECC----CCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 8884 4678888876542 122344543 566 66663 46789999999885 4
Q ss_pred EEeeec
Q 046579 381 KKLHDV 386 (416)
Q Consensus 381 ~~v~~~ 386 (416)
+.+..+
T Consensus 336 ~~i~~v 341 (352)
T TIGR02658 336 SSVNQL 341 (352)
T ss_pred eeeccC
Confidence 444333
No 55
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=78.58 E-value=55 Score=33.49 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=26.0
Q ss_pred cCCcEEEccEEEEEeeCCcEEEEEcCC--ceEee
Q 046579 232 FRGGVFWNGAIHWVSTHGSSLYFDVDQ--EKLRE 263 (416)
Q Consensus 232 ~~~~v~~~G~lyw~~~~~~il~fD~~~--e~~~~ 263 (416)
...++..+|.+|.....+.|.++|..+ +.|+.
T Consensus 62 ~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~ 95 (527)
T TIGR03075 62 ESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKY 95 (527)
T ss_pred ccCCEEECCEEEEECCCCcEEEEECCCCceeeEe
Confidence 356788899999988888999999876 56764
No 56
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=78.53 E-value=47 Score=29.31 Aligned_cols=142 Identities=15% Similarity=0.100 Sum_probs=76.1
Q ss_pred EEEEEECCCCC--eeeccCCCccccccccCCcEEEccEEEEEeeCCcEEEEEcCCc--eEeecCCCCCCCcccccceeEE
Q 046579 206 QIEIYSSKTGP--WRLSGGSFTAPSVINFRGGVFWNGAIHWVSTHGSSLYFDVDQE--KLREMPMPPIPDEWEERRHQYF 281 (416)
Q Consensus 206 ~~~vyss~t~~--W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~il~fD~~~e--~~~~i~~P~~~~~~~~~~~~~l 281 (416)
.+..++..+++ |+..-.+ .. .......+..+|.+|-...++.|.++|..+. .|+. .++...... .
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~-~~--~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~-~~~~~~~~~-------~ 72 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP-GI--GGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRF-DLPGPISGA-------P 72 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS-SC--SSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEE-ECSSCGGSG-------E
T ss_pred EEEEEECCCCCEEEEEECCC-CC--CCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-eccccccce-------e
Confidence 56777876664 8863211 11 0011224557888888878889999998654 4543 333321111 2
Q ss_pred EEeCCeEEEEEEecCCcCeEEEEEEeC--CCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCC
Q 046579 282 GESRGHLHLIEIYGPCTALFNVYEMKT--DYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDD 359 (416)
Q Consensus 282 ~~~~G~L~~v~~~~~~~~~l~iW~l~~--~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
...++++++.. .. . .|+.++. .+..|.....-. +.. + .. ....+ .+ .+
T Consensus 73 ~~~~~~v~v~~--~~--~--~l~~~d~~tG~~~W~~~~~~~-~~~----~-~~-----------~~~~~-~~------~~ 122 (238)
T PF13360_consen 73 VVDGGRVYVGT--SD--G--SLYALDAKTGKVLWSIYLTSS-PPA----G-VR-----------SSSSP-AV------DG 122 (238)
T ss_dssp EEETTEEEEEE--TT--S--EEEEEETTTSCEEEEEEE-SS-CTC----S-TB-------------SEE-EE------ET
T ss_pred eeccccccccc--ce--e--eeEecccCCcceeeeeccccc-ccc----c-cc-----------cccCc-eE------ec
Confidence 45577776654 21 2 5666663 334576322210 100 0 00 01111 11 14
Q ss_pred cEEEEee-CCeEEEEEcCCCcEEEeeecCC
Q 046579 360 SYLVLHL-PKKAVRYNLKDRTFKKLHDVAP 388 (416)
Q Consensus 360 ~~i~l~~-~~~l~~ydl~~~~~~~v~~~~~ 388 (416)
+.+++.. ++.++++|+++++..+-..+..
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred CEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 4556654 8999999999999877766633
No 57
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=76.16 E-value=71 Score=34.32 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=27.0
Q ss_pred cCCcEEEccEEEEEeeCCcEEEEEcCC--ceEee
Q 046579 232 FRGGVFWNGAIHWVSTHGSSLYFDVDQ--EKLRE 263 (416)
Q Consensus 232 ~~~~v~~~G~lyw~~~~~~il~fD~~~--e~~~~ 263 (416)
...++.++|.+|..+..+.++++|.+| +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHNKVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCCeEEEEECCCCcEEEEE
Confidence 467889999999998888999999875 66764
No 58
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=75.45 E-value=4.1 Score=25.09 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=20.0
Q ss_pred CCcEEEccEEEEEeeCCcEEEEEcCC
Q 046579 233 RGGVFWNGAIHWVSTHGSSLYFDVDQ 258 (416)
Q Consensus 233 ~~~v~~~G~lyw~~~~~~il~fD~~~ 258 (416)
..++..+|.+|....++.+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred cCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 55688899999999999999999875
No 59
>smart00612 Kelch Kelch domain.
Probab=75.16 E-value=8 Score=24.14 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.0
Q ss_pred ceEEEEEECCCCCeeecc
Q 046579 204 HYQIEIYSSKTGPWRLSG 221 (416)
Q Consensus 204 ~~~~~vyss~t~~W~~~~ 221 (416)
...+++|+.+++.|+...
T Consensus 14 ~~~v~~yd~~~~~W~~~~ 31 (47)
T smart00612 14 LKSVEVYDPETNKWTPLP 31 (47)
T ss_pred eeeEEEECCCCCeEccCC
Confidence 347899999999999764
No 60
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=74.18 E-value=7.9 Score=29.95 Aligned_cols=41 Identities=20% Similarity=0.437 Sum_probs=29.4
Q ss_pred ceEEEEccCCc-ceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEe
Q 046579 146 RNYYVYNPTNK-QYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRN 196 (416)
Q Consensus 146 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~ 196 (416)
..++++||.|+ .|. |..+. ...+.+-+|+. ...|+||.+..
T Consensus 11 A~V~~yd~~tKk~Wv--Ps~~~-------~~~V~~y~~~~-~ntfRIi~~~~ 52 (111)
T cd01206 11 AHVFQIDPKTKKNWI--PASKH-------AVTVSYFYDST-RNVYRIISVGG 52 (111)
T ss_pred eEEEEECCCCcceeE--eCCCC-------ceeEEEEecCC-CcEEEEEEecC
Confidence 46899999997 774 43332 34667788887 57999998644
No 61
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=73.48 E-value=10 Score=24.48 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=24.7
Q ss_pred eeCceEEeeecC----CCCCCceEEEEccCCcceEecCCCC
Q 046579 129 SCNGLLLCSSSR----AYQPRRNYYVYNPTNKQYTILPRLH 165 (416)
Q Consensus 129 s~~GLvl~~~~~----~~~~~~~~~V~NP~T~~~~~LP~~~ 165 (416)
..+|-|++..+. .......+.++|+-|.+|..+++++
T Consensus 9 ~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 9 VLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred EECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 345555555543 1122345899999999999998753
No 62
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=72.58 E-value=6.7 Score=25.24 Aligned_cols=30 Identities=13% Similarity=0.229 Sum_probs=18.3
Q ss_pred cEEE-ccEEEEEeeC-------CcEEEEEcCCceEeec
Q 046579 235 GVFW-NGAIHWVSTH-------GSSLYFDVDQEKLREM 264 (416)
Q Consensus 235 ~v~~-~G~lyw~~~~-------~~il~fD~~~e~~~~i 264 (416)
++.+ ++.+|-.... ..+..||+.+++|+.+
T Consensus 7 ~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 7 AVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 3444 3566655432 2588999999999988
No 63
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=72.19 E-value=1.5 Score=44.62 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=37.2
Q ss_pred cccCCHHHHHHHHccCChhhhhhhhcchHhHhhhhcCcccc
Q 046579 31 TIINNDDLLTEILLCLPIKSLLKFKAVSKHWLSLISNPIFS 71 (416)
Q Consensus 31 ~~~LPddll~eIL~rLP~~~l~r~~~VcK~W~~li~s~~F~ 71 (416)
...||.++...||..|+.++++.+++||+.|+.++.+...-
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~ 148 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW 148 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence 34699999999999999999999999999999999876655
No 64
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=71.91 E-value=44 Score=30.78 Aligned_cols=120 Identities=13% Similarity=0.176 Sum_probs=70.9
Q ss_pred EEeeeCceEEeeecCCCCCCceEEEEccCCcceEecCCCCcC-CCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCc
Q 046579 126 VLQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLHVD-RGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGH 204 (416)
Q Consensus 126 ~~~s~~GLvl~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~-~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~ 204 (416)
+++.-+|-|-+... ..+.+...||.++.-..+|.+... .+.. .+..|+. +.-. +... ..
T Consensus 194 i~atpdGsvwyasl----agnaiaridp~~~~aev~p~P~~~~~gsR------riwsdpi--g~~w---ittw-----g~ 253 (353)
T COG4257 194 ICATPDGSVWYASL----AGNAIARIDPFAGHAEVVPQPNALKAGSR------RIWSDPI--GRAW---ITTW-----GT 253 (353)
T ss_pred eEECCCCcEEEEec----cccceEEcccccCCcceecCCCccccccc------ccccCcc--CcEE---Eecc-----CC
Confidence 55566666665543 234577899999988888887652 1211 1334443 2222 2211 12
Q ss_pred eEEEEEECCCCCeeeccCCCccccccccCCcEEEcc-EEEEEe--eCCcEEEEEcCCceEeecCCCCC
Q 046579 205 YQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNG-AIHWVS--THGSSLYFDVDQEKLREMPMPPI 269 (416)
Q Consensus 205 ~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~--~~~~il~fD~~~e~~~~i~~P~~ 269 (416)
-.+.-|+..+.+|.+-..+-.. .....+++|. -.-|+. ..+.|+.||..+++|.+++.|..
T Consensus 254 g~l~rfdPs~~sW~eypLPgs~----arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPLPGSK----ARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred ceeeEeCcccccceeeeCCCCC----CCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 2678899988889875322111 1122344433 234653 34689999999999999988754
No 65
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=71.56 E-value=4.8 Score=26.09 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=19.3
Q ss_pred CeEEEEEcCCCcEEEeeecCCCC
Q 046579 368 KKAVRYNLKDRTFKKLHDVAPAG 390 (416)
Q Consensus 368 ~~l~~ydl~~~~~~~v~~~~~~~ 390 (416)
+.++.||+++++|+++.++.++|
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCc
Confidence 58899999999999997765544
No 66
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=70.63 E-value=24 Score=22.21 Aligned_cols=40 Identities=10% Similarity=-0.036 Sum_probs=31.2
Q ss_pred EEEEeCCeEEEEEEecC-CcCeEEEEEEeCCCCCceEEEEE
Q 046579 280 YFGESRGHLHLIEIYGP-CTALFNVYEMKTDYSGWFVKYRV 319 (416)
Q Consensus 280 ~l~~~~G~L~~v~~~~~-~~~~l~iW~l~~~~~~W~~~~~i 319 (416)
..+..+++|+++..... ....=.+|+++-....|...-.+
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 36678999999998866 44567888888777899877654
No 67
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=70.46 E-value=9.8 Score=21.94 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=19.4
Q ss_pred EEEccEEEEEeeCCcEEEEEcCCce
Q 046579 236 VFWNGAIHWVSTHGSSLYFDVDQEK 260 (416)
Q Consensus 236 v~~~G~lyw~~~~~~il~fD~~~e~ 260 (416)
+..+|.+|....++.+.++|.++.+
T Consensus 3 ~~~~~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEcCCCEEEEEEcccCc
Confidence 4567788888888899999986643
No 68
>smart00612 Kelch Kelch domain.
Probab=70.30 E-value=9 Score=23.89 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=19.7
Q ss_pred CceEEEEccCCcceEecCCCCcCC
Q 046579 145 RRNYYVYNPTNKQYTILPRLHVDR 168 (416)
Q Consensus 145 ~~~~~V~NP~T~~~~~LP~~~~~~ 168 (416)
...+.++||.|++|..+|+++..+
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCcc
Confidence 356899999999999999877543
No 69
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=68.81 E-value=1.1e+02 Score=29.37 Aligned_cols=142 Identities=14% Similarity=0.036 Sum_probs=80.7
Q ss_pred EEEEEECCCCCeeeccCCCccccccccCC-cEEEccEEEEEeeCCcEEEEEcCCce--EeecCCCCCCCcccccceeEEE
Q 046579 206 QIEIYSSKTGPWRLSGGSFTAPSVINFRG-GVFWNGAIHWVSTHGSSLYFDVDQEK--LREMPMPPIPDEWEERRHQYFG 282 (416)
Q Consensus 206 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~il~fD~~~e~--~~~i~~P~~~~~~~~~~~~~l~ 282 (416)
.......++..|...-..... ...... .+..+|.+|.....+.|.+||..+.+ |+.-... ....... -+.
T Consensus 36 ~~~~~~~g~~~W~~~~~~~~~--~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~----~~~ 108 (370)
T COG1520 36 AVANNTSGTLLWSVSLGSGGG--GIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSG----PIL 108 (370)
T ss_pred EEEcccCcceeeeeecccCcc--ceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcC-cceeccC----ceE
Confidence 455556677788643110000 112233 59999999999888899999998754 8653332 0001111 123
Q ss_pred EeCCeEEEEEEecCCcCeEEEEEEeCC--CCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCc
Q 046579 283 ESRGHLHLIEIYGPCTALFNVYEMKTD--YSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDS 360 (416)
Q Consensus 283 ~~~G~L~~v~~~~~~~~~l~iW~l~~~--~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (416)
..+|+|++-... -.++.|+.. +..|...... . +... -.++ + .+.
T Consensus 109 ~~~G~i~~g~~~------g~~y~ld~~~G~~~W~~~~~~--~------~~~~-------------~~~v-~------~~~ 154 (370)
T COG1520 109 GSDGKIYVGSWD------GKLYALDASTGTLVWSRNVGG--S------PYYA-------------SPPV-V------GDG 154 (370)
T ss_pred EeCCeEEEeccc------ceEEEEECCCCcEEEEEecCC--C------eEEe-------------cCcE-E------cCc
Confidence 337886654321 178888863 2346543322 0 1110 0111 1 244
Q ss_pred EEEEe-eCCeEEEEEcCCCcEEEeeecCC
Q 046579 361 YLVLH-LPKKAVRYNLKDRTFKKLHDVAP 388 (416)
Q Consensus 361 ~i~l~-~~~~l~~ydl~~~~~~~v~~~~~ 388 (416)
.|+.. .++.+++.|-++++..+..+++.
T Consensus 155 ~v~~~s~~g~~~al~~~tG~~~W~~~~~~ 183 (370)
T COG1520 155 TVYVGTDDGHLYALNADTGTLKWTYETPA 183 (370)
T ss_pred EEEEecCCCeEEEEEccCCcEEEEEecCC
Confidence 67776 67999999999999988876643
No 70
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=65.68 E-value=1.3e+02 Score=28.78 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=66.7
Q ss_pred cCCcEEE--ccEEEEEeeCCcEEEEEcCCceEeec---CCCCC---CCcccccceeEEEE--eCCeEEEEEEecCC----
Q 046579 232 FRGGVFW--NGAIHWVSTHGSSLYFDVDQEKLREM---PMPPI---PDEWEERRHQYFGE--SRGHLHLIEIYGPC---- 297 (416)
Q Consensus 232 ~~~~v~~--~G~lyw~~~~~~il~fD~~~e~~~~i---~~P~~---~~~~~~~~~~~l~~--~~G~L~~v~~~~~~---- 297 (416)
...+++. +|.+||++.++.|...|++.++-... ++-.. ...|.......++. -.++|+++...+..
T Consensus 186 f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp -S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred ccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 3445544 46899999999999999987653322 11110 01232111122333 27788887654322
Q ss_pred cCeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEE-Ee-eCCeEEEEEc
Q 046579 298 TALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLV-LH-LPKKAVRYNL 375 (416)
Q Consensus 298 ~~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-l~-~~~~l~~ydl 375 (416)
...=+||+++-..+ ..+.+|+++. + ..-+++.++ +.-.+| +. .++.|++||.
T Consensus 266 dpgteVWv~D~~t~--krv~Ri~l~~-----~----------------~~Si~Vsqd---~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 266 DPGTEVWVYDLKTH--KRVARIPLEH-----P----------------IDSIAVSQD---DKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp S-EEEEEEEETTTT--EEEEEEEEEE-----E----------------ESEEEEESS---SS-EEEEEETTTTEEEEEET
T ss_pred CCceEEEEEECCCC--eEEEEEeCCC-----c----------------cceEEEccC---CCcEEEEEcCCCCeEEEEeC
Confidence 24679999996433 4566665542 1 113455543 233444 33 3578999999
Q ss_pred CCCcE-EEeeec
Q 046579 376 KDRTF-KKLHDV 386 (416)
Q Consensus 376 ~~~~~-~~v~~~ 386 (416)
.|++. +++.++
T Consensus 320 ~tGk~~~~~~~l 331 (342)
T PF06433_consen 320 ATGKLVRSIEQL 331 (342)
T ss_dssp TT--EEEEE---
T ss_pred cCCcEEeehhcc
Confidence 99874 344333
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=65.01 E-value=1.3e+02 Score=28.81 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=24.4
Q ss_pred CCcEEEccEEEEEeeCCcEEEEEcCCc--eEee
Q 046579 233 RGGVFWNGAIHWVSTHGSSLYFDVDQE--KLRE 263 (416)
Q Consensus 233 ~~~v~~~G~lyw~~~~~~il~fD~~~e--~~~~ 263 (416)
..++..+|.+|.....+.+.++|.++. .|..
T Consensus 235 ~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 235 GDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred CccEEECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence 456778999999888899999999764 4543
No 72
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=64.28 E-value=38 Score=33.05 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=25.7
Q ss_pred eCceEEeeecCCCCCCceEEEEccCCcceEecCCCC
Q 046579 130 CNGLLLCSSSRAYQPRRNYYVYNPTNKQYTILPRLH 165 (416)
Q Consensus 130 ~~GLvl~~~~~~~~~~~~~~V~NP~T~~~~~LP~~~ 165 (416)
-+.|||+.-..-....-+++|+|..|++...+-...
T Consensus 237 vG~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig 272 (448)
T PF12458_consen 237 VGNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIG 272 (448)
T ss_pred cCcEEEEEeccCCCcceeEEEEecccceEEEecchh
Confidence 456677766543333447999999999999887654
No 73
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=63.98 E-value=1.1e+02 Score=27.69 Aligned_cols=80 Identities=13% Similarity=0.218 Sum_probs=50.9
Q ss_pred ccccCCcEEEccEEEEEeeC-CcEEEEEcCCce-EeecCCCCC------CCcccccceeEEEEeCCeEEEEEEecCCcCe
Q 046579 229 VINFRGGVFWNGAIHWVSTH-GSSLYFDVDQEK-LREMPMPPI------PDEWEERRHQYFGESRGHLHLIEIYGPCTAL 300 (416)
Q Consensus 229 ~~~~~~~v~~~G~lyw~~~~-~~il~fD~~~e~-~~~i~~P~~------~~~~~~~~~~~l~~~~G~L~~v~~~~~~~~~ 300 (416)
.......|..+|.+|+.... ..|+-||+.++. -..-.+|.. +-.+.......+++.+..|.++-...++...
T Consensus 67 ~~~gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~ 146 (249)
T KOG3545|consen 67 SWDGTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGT 146 (249)
T ss_pred CccccceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCc
Confidence 34567789999999997644 578999998843 222334432 1112222334566766668888766666667
Q ss_pred EEEEEEeC
Q 046579 301 FNVYEMKT 308 (416)
Q Consensus 301 l~iW~l~~ 308 (416)
+.|=+|+.
T Consensus 147 iv~skLdp 154 (249)
T KOG3545|consen 147 IVLSKLDP 154 (249)
T ss_pred EEeeccCH
Confidence 77788875
No 74
>PF13013 F-box-like_2: F-box-like domain
Probab=63.97 E-value=9 Score=29.93 Aligned_cols=30 Identities=17% Similarity=0.016 Sum_probs=25.4
Q ss_pred ccccCCHHHHHHHHccCChhhhhhhhcchH
Q 046579 30 ETIINNDDLLTEILLCLPIKSLLKFKAVSK 59 (416)
Q Consensus 30 ~~~~LPddll~eIL~rLP~~~l~r~~~VcK 59 (416)
....||+||+..|+..-....+..+-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 567899999999999999888877766666
No 75
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=61.08 E-value=42 Score=26.28 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=29.7
Q ss_pred ceEEEEccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEec
Q 046579 146 RNYYVYNPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNC 197 (416)
Q Consensus 146 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~ 197 (416)
..+.++||.|+.|. |..+...+ ...+.+-+++. .+.|+|+.....
T Consensus 9 A~Vm~~d~~tk~W~--P~~~~~~~----ls~V~~~~~~~-~~~yrIvg~~~~ 53 (111)
T cd01207 9 ASVMVYDDSNKKWV--PAGGGSQG----FSRVQIYHHPR-NNTFRVVGRKLQ 53 (111)
T ss_pred EEeeEEcCCCCcEE--cCCCCCCC----cceEEEEEcCC-CCEEEEEEeecC
Confidence 35889999999974 44332112 34556667776 578999976544
No 76
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=59.12 E-value=1.3e+02 Score=30.50 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=26.3
Q ss_pred cCCcEEEccEEEEEeeCCcEEEEEcCC--ceEee
Q 046579 232 FRGGVFWNGAIHWVSTHGSSLYFDVDQ--EKLRE 263 (416)
Q Consensus 232 ~~~~v~~~G~lyw~~~~~~il~fD~~~--e~~~~ 263 (416)
...++..+|.+|....++.+.++|..+ ..|+.
T Consensus 54 ~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 54 EGTPLVVDGDMYFTTSHSALFALDAATGKVLWRY 87 (488)
T ss_pred ccCCEEECCEEEEeCCCCcEEEEECCCChhhcee
Confidence 356789999999998889999999876 45764
No 77
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=59.08 E-value=24 Score=21.40 Aligned_cols=28 Identities=7% Similarity=-0.059 Sum_probs=22.3
Q ss_pred EEEEe-eCCeEEEEEcCCCcEEEeeecCC
Q 046579 361 YLVLH-LPKKAVRYNLKDRTFKKLHDVAP 388 (416)
Q Consensus 361 ~i~l~-~~~~l~~ydl~~~~~~~v~~~~~ 388 (416)
.||+. .++.++++|.+|++..+-.+..+
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 45554 57799999999999999887654
No 78
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=58.09 E-value=28 Score=34.68 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=77.9
Q ss_pred cCCcEEEcc--EEEEEeeCCc------EEEEEcCCceEeecCCCC-CCCcccccceeEEEEeCCeEEEEEEecCC-----
Q 046579 232 FRGGVFWNG--AIHWVSTHGS------SLYFDVDQEKLREMPMPP-IPDEWEERRHQYFGESRGHLHLIEIYGPC----- 297 (416)
Q Consensus 232 ~~~~v~~~G--~lyw~~~~~~------il~fD~~~e~~~~i~~P~-~~~~~~~~~~~~l~~~~G~L~~v~~~~~~----- 297 (416)
..+.|+..| ++|-...-+. --.|....+.|+.|..-. .|......+ ..+-++..||+++.-+-+.
T Consensus 263 GHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR-MVid~S~~KLYLlG~Y~~sS~r~~ 341 (723)
T KOG2437|consen 263 GHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHR-MVIDISRRKLYLLGRYLDSSVRNS 341 (723)
T ss_pred cceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhh-hhhhhhHhHHhhhhhccccccccc
Confidence 457888888 8887665433 367888999999985432 122211111 2344556788887654221
Q ss_pred -cCeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEEee----------
Q 046579 298 -TALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHL---------- 366 (416)
Q Consensus 298 -~~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~---------- 366 (416)
..+-++|+++-+...|....- +...- .-|.... | +-+++.. +..+|++.+
T Consensus 342 ~s~RsDfW~FDi~~~~W~~ls~-dt~~d--GGP~~vf---D---------HqM~Vd~----~k~~iyVfGGr~~~~~e~~ 402 (723)
T KOG2437|consen 342 KSLRSDFWRFDIDTNTWMLLSE-DTAAD--GGPKLVF---D---------HQMCVDS----EKHMIYVFGGRILTCNEPQ 402 (723)
T ss_pred cccccceEEEecCCceeEEecc-ccccc--CCcceee---c---------ceeeEec----CcceEEEecCeeccCCCcc
Confidence 246789999987788986542 22111 1233221 1 2333321 344566632
Q ss_pred CCeEEEEEcCCCcEEEee
Q 046579 367 PKKAVRYNLKDRTFKKLH 384 (416)
Q Consensus 367 ~~~l~~ydl~~~~~~~v~ 384 (416)
-+.+++||.+...|+...
T Consensus 403 f~GLYaf~~~~~~w~~l~ 420 (723)
T KOG2437|consen 403 FSGLYAFNCQCQTWKLLR 420 (723)
T ss_pred ccceEEEecCCccHHHHH
Confidence 258999999999988654
No 79
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=54.55 E-value=1.8e+02 Score=27.05 Aligned_cols=63 Identities=8% Similarity=0.185 Sum_probs=45.6
Q ss_pred ceEEEEEECCCCCeeeccCCCccc---cccccCCcEEEccEEEEEe-eCCcEEEEEcCCceEeecCC
Q 046579 204 HYQIEIYSSKTGPWRLSGGSFTAP---SVINFRGGVFWNGAIHWVS-THGSSLYFDVDQEKLREMPM 266 (416)
Q Consensus 204 ~~~~~vyss~t~~W~~~~~~~~~~---~~~~~~~~v~~~G~lyw~~-~~~~il~fD~~~e~~~~i~~ 266 (416)
...+++|+..+.+|...+....-. ..+....-+++.|.|-.-. ....+..||+.+.+|+.+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 448999999999999875432111 1233567888888877655 34578999999999987754
No 80
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=50.63 E-value=74 Score=28.72 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=24.2
Q ss_pred CCcEEEEeeCCeEEEEEcCCCcEEEeee
Q 046579 358 DDSYLVLHLPKKAVRYNLKDRTFKKLHD 385 (416)
Q Consensus 358 ~~~~i~l~~~~~l~~ydl~~~~~~~v~~ 385 (416)
++.+++-..+..++..|++++++.+..+
T Consensus 126 enSi~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 126 ENSILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred CCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence 5677888899999999999999998764
No 81
>PLN02772 guanylate kinase
Probab=50.32 E-value=98 Score=30.27 Aligned_cols=72 Identities=8% Similarity=-0.030 Sum_probs=45.9
Q ss_pred cCCcEEEccEEEEEeeC-------CcEEEEEcCCceEeecCC---CCCCCcccccceeEEEEeCCeEEEEEEecCCcCeE
Q 046579 232 FRGGVFWNGAIHWVSTH-------GSSLYFDVDQEKLREMPM---PPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALF 301 (416)
Q Consensus 232 ~~~~v~~~G~lyw~~~~-------~~il~fD~~~e~~~~i~~---P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~~~l 301 (416)
...+|.++.++|.+..+ ..+.+||..+.+|..-.. ||.+... +..+...+++|.++.- +....=
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G----hSa~v~~~~rilv~~~--~~~~~~ 100 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG----YSAVVLNKDRILVIKK--GSAPDD 100 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCc----ceEEEECCceEEEEeC--CCCCcc
Confidence 45788889999977643 147899999999986431 2222221 1224445788887742 333456
Q ss_pred EEEEEeCC
Q 046579 302 NVYEMKTD 309 (416)
Q Consensus 302 ~iW~l~~~ 309 (416)
+||.|+-+
T Consensus 101 ~~w~l~~~ 108 (398)
T PLN02772 101 SIWFLEVD 108 (398)
T ss_pred ceEEEEcC
Confidence 79999854
No 82
>PF15408 PH_7: Pleckstrin homology domain
Probab=48.43 E-value=10 Score=27.81 Aligned_cols=24 Identities=21% Similarity=0.643 Sum_probs=20.9
Q ss_pred hhhhhhhhcchHhHhhhhcCcccc
Q 046579 48 IKSLLKFKAVSKHWLSLISNPIFS 71 (416)
Q Consensus 48 ~~~l~r~~~VcK~W~~li~s~~F~ 71 (416)
++.++..+-|||.|-.++.+|+|.
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~ 99 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFR 99 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhh
Confidence 457778889999999999999985
No 83
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=44.45 E-value=3.2e+02 Score=26.82 Aligned_cols=135 Identities=10% Similarity=0.175 Sum_probs=68.1
Q ss_pred EEEEEECC---CCCeeeccCCCccccccccCCcEEEccE-EEEEeeCCcEEEEEcCCceEe-ecCCCCCCCcccccceeE
Q 046579 206 QIEIYSSK---TGPWRLSGGSFTAPSVINFRGGVFWNGA-IHWVSTHGSSLYFDVDQEKLR-EMPMPPIPDEWEERRHQY 280 (416)
Q Consensus 206 ~~~vyss~---t~~W~~~~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~~~~ 280 (416)
.+...+.+ -+.|+-+..+.. ..-++.-+|+ ++-+..+..|--|+..+..-. .|..- +.+..
T Consensus 335 ~i~~wdlDgn~~~~W~gvr~~~v------~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~--------~~its 400 (519)
T KOG0293|consen 335 TIIMWDLDGNILGNWEGVRDPKV------HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE--------QPITS 400 (519)
T ss_pred cEEEecCCcchhhccccccccee------EEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc--------CceeE
Confidence 34444444 346876543221 1223444553 444444456666776554333 23211 11112
Q ss_pred EE-EeCCeEEEEEEecCCcCeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEE-EEeecCCCCC
Q 046579 281 FG-ESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSI-LCVVREENDD 358 (416)
Q Consensus 281 l~-~~~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 358 (416)
+. ..+|++.++.... +.+.+|-+++ |.++.+- ..... ..+-+ -||+ | .+
T Consensus 401 ~~iS~d~k~~LvnL~~---qei~LWDl~e----~~lv~kY---------~Ghkq----------~~fiIrSCFg-g--~~ 451 (519)
T KOG0293|consen 401 FSISKDGKLALVNLQD---QEIHLWDLEE----NKLVRKY---------FGHKQ----------GHFIIRSCFG-G--GN 451 (519)
T ss_pred EEEcCCCcEEEEEccc---CeeEEeecch----hhHHHHh---------hcccc----------cceEEEeccC-C--CC
Confidence 33 3489999998765 6899999995 3332221 01000 11222 2332 1 13
Q ss_pred CcEEEEe-eCCeEEEEEcCCCcEEEe
Q 046579 359 DSYLVLH-LPKKAVRYNLKDRTFKKL 383 (416)
Q Consensus 359 ~~~i~l~-~~~~l~~ydl~~~~~~~v 383 (416)
+.+|.-+ .+.+++.++.++++.-.+
T Consensus 452 ~~fiaSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred cceEEecCCCceEEEEEccCCceeEe
Confidence 4455553 567888888888876554
No 84
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.23 E-value=1.2e+02 Score=29.05 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=61.3
Q ss_pred EEEEEECCCCCeeeccCCCccccccccCCcEEEcc-EEEEEeeC------------------------------------
Q 046579 206 QIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNG-AIHWVSTH------------------------------------ 248 (416)
Q Consensus 206 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G-~lyw~~~~------------------------------------ 248 (416)
.+..|+..+++|.......+.. +....++..++ .+|+...-
T Consensus 114 d~Y~y~p~~nsW~kl~t~sP~g--l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~d 191 (381)
T COG3055 114 DAYRYDPSTNSWHKLDTRSPTG--LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED 191 (381)
T ss_pred eeEEecCCCChhheeccccccc--cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHH
Confidence 5788999999999886544432 23344555555 67776431
Q ss_pred ----CcEEEEEcCCceEeecC-CCCCCCcccccceeEEEEeCCeEEEEEEecCCc-CeEEEEEEe--CCCCCceEEEE
Q 046579 249 ----GSSLYFDVDQEKLREMP-MPPIPDEWEERRHQYFGESRGHLHLIEIYGPCT-ALFNVYEMK--TDYSGWFVKYR 318 (416)
Q Consensus 249 ----~~il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~-~~l~iW~l~--~~~~~W~~~~~ 318 (416)
..+++||..+++|+..- .|-.+... .-++..+++|.++...-... ..-++|+.+ ++...|.+.-.
T Consensus 192 y~~n~ev~sy~p~~n~W~~~G~~pf~~~aG-----sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~ 264 (381)
T COG3055 192 YFFNKEVLSYDPSTNQWRNLGENPFYGNAG-----SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSD 264 (381)
T ss_pred hcccccccccccccchhhhcCcCcccCccC-----cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccC
Confidence 13789999999998764 45432211 11333456677775431111 234445443 34567876544
No 85
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=42.04 E-value=2.7e+02 Score=25.23 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=47.8
Q ss_pred CCeEEEEEEecCCcCeEEEEEEeCCCCCc-eEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEE
Q 046579 285 RGHLHLIEIYGPCTALFNVYEMKTDYSGW-FVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLV 363 (416)
Q Consensus 285 ~G~L~~v~~~~~~~~~l~iW~l~~~~~~W-~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 363 (416)
.|...++.... ..+.|+...+....+ .+...+.++.. ..-+.+. ++.|+
T Consensus 103 ~~~~~L~va~k---k~i~i~~~~~~~~~f~~~~ke~~lp~~---------------------~~~i~~~------~~~i~ 152 (275)
T PF00780_consen 103 EGSRRLCVAVK---KKILIYEWNDPRNSFSKLLKEISLPDP---------------------PSSIAFL------GNKIC 152 (275)
T ss_pred ccceEEEEEEC---CEEEEEEEECCcccccceeEEEEcCCC---------------------cEEEEEe------CCEEE
Confidence 44445554444 489999998754556 56666655421 1233332 45688
Q ss_pred EeeCCeEEEEEcCCCcEEEeeecC
Q 046579 364 LHLPKKAVRYNLKDRTFKKLHDVA 387 (416)
Q Consensus 364 l~~~~~l~~ydl~~~~~~~v~~~~ 387 (416)
+........+|+.+++.+.+.+..
T Consensus 153 v~~~~~f~~idl~~~~~~~l~~~~ 176 (275)
T PF00780_consen 153 VGTSKGFYLIDLNTGSPSELLDPS 176 (275)
T ss_pred EEeCCceEEEecCCCCceEEeCcc
Confidence 887888999999999999887543
No 86
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=41.83 E-value=48 Score=26.46 Aligned_cols=18 Identities=11% Similarity=0.431 Sum_probs=16.5
Q ss_pred CCeEEEEEcCCCcEEEee
Q 046579 367 PKKAVRYNLKDRTFKKLH 384 (416)
Q Consensus 367 ~~~l~~ydl~~~~~~~v~ 384 (416)
...+++||+++.+++.|.
T Consensus 19 ~~~IvsFDv~~E~f~~i~ 36 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIK 36 (129)
T ss_pred CcEEEEEEcCCceEEEEE
Confidence 479999999999999987
No 87
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=41.36 E-value=3.2e+02 Score=25.98 Aligned_cols=172 Identities=15% Similarity=0.244 Sum_probs=86.7
Q ss_pred EEEeCCCCCCCeEEEEEEecCCCCCCceEEEEEECCCCC--eeeccCCCccccccccCCcEEE-cc-EEEEEeeC-CcEE
Q 046579 178 NLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGP--WRLSGGSFTAPSVINFRGGVFW-NG-AIHWVSTH-GSSL 252 (416)
Q Consensus 178 ~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~--W~~~~~~~~~~~~~~~~~~v~~-~G-~lyw~~~~-~~il 252 (416)
.+.++|. +.|-.+. ... .-.+.+|+.+.+. ...... ...+.....+..++. +| .+|.+... ..|.
T Consensus 148 ~v~~~pd--g~~v~v~--dlG-----~D~v~~~~~~~~~~~l~~~~~-~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 148 QVVFSPD--GRFVYVP--DLG-----ADRVYVYDIDDDTGKLTPVDS-IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp EEEE-TT--SSEEEEE--ETT-----TTEEEEEEE-TTS-TEEEEEE-EECSTTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred eEEECCC--CCEEEEE--ecC-----CCEEEEEEEeCCCceEEEeec-cccccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 4566764 4555443 222 1178888887665 543211 011101112223332 55 56666554 4677
Q ss_pred EEEcC--CceEeecC-CCCCCCccccc-ceeEEEEe-CCeEEEEEEecCCcCeEEEEEEeCCCCCceEEEEEcccccccc
Q 046579 253 YFDVD--QEKLREMP-MPPIPDEWEER-RHQYFGES-RGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYV 327 (416)
Q Consensus 253 ~fD~~--~e~~~~i~-~P~~~~~~~~~-~~~~l~~~-~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~~~i~~~~l~~~ 327 (416)
+|++. +..+..++ .+..+...... .-.-+... +|+..++.-.. ...|.++.++...+.-.+...+... +.
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~--~~sI~vf~~d~~~g~l~~~~~~~~~---G~ 292 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG--SNSISVFDLDPATGTLTLVQTVPTG---GK 292 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT--TTEEEEEEECTTTTTEEEEEEEEES---SS
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc--CCEEEEEEEecCCCceEEEEEEeCC---CC
Confidence 77776 66665542 11111111111 12234444 78776665443 3689999997655666655555432 11
Q ss_pred cccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEEe--eCCeEEEEE--cCCCcEEEeee
Q 046579 328 FPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLH--LPKKAVRYN--LKDRTFKKLHD 385 (416)
Q Consensus 328 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~--~~~~l~~yd--l~~~~~~~v~~ 385 (416)
.| +-+.+.. ++.++++. .++.+.+|+ .++++++.+..
T Consensus 293 ~P-----------------r~~~~s~----~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 293 FP-----------------RHFAFSP----DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp SE-----------------EEEEE-T----TSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred Cc-----------------cEEEEeC----CCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 12 2233432 57788884 355777765 56888888874
No 88
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=40.08 E-value=2.7e+02 Score=24.75 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred ccEEEEEeeCC-cEEEEEcCCceEeecCCCCCCCcccccceeEEEE-eCCeEEEEEEecCCcCeEEEEEEeCCCCCceEE
Q 046579 239 NGAIHWVSTHG-SSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGE-SRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVK 316 (416)
Q Consensus 239 ~G~lyw~~~~~-~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~-~~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~ 316 (416)
+|.|||..... .|..+|..+.+...+..|. ....... .+|+|++..... +..++-..+++...
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--------~~G~~~~~~~g~l~v~~~~~-------~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--------PNGMAFDRPDGRLYVADSGG-------IAVVDPDTGKVTVL 75 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESSS--------EEEEEEECTTSEEEEEETTC-------EEEEETTTTEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecCC--------CceEEEEccCCEEEEEEcCc-------eEEEecCCCcEEEE
Q ss_pred EEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEEeeC----------CeEEEEEcCCCcEEEeee
Q 046579 317 YRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLHLP----------KKAVRYNLKDRTFKKLHD 385 (416)
Q Consensus 317 ~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~----------~~l~~ydl~~~~~~~v~~ 385 (416)
....-..... ....-+++.. +|. ||+.+. +.++.++.+ ++++.+.+
T Consensus 76 ~~~~~~~~~~-----------------~~~ND~~vd~----~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 76 ADLPDGGVPF-----------------NRPNDVAVDP----DGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp EEEETTCSCT-----------------EEEEEEEE-T----TS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred eeccCCCccc-----------------CCCceEEEcC----CCC-EEEEecCCCccccccccceEEECCC-CeEEEEec
No 89
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=39.85 E-value=3.2e+02 Score=25.58 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=16.8
Q ss_pred CcEEEE-eeCCeEEEEEcCCCc
Q 046579 359 DSYLVL-HLPKKAVRYNLKDRT 379 (416)
Q Consensus 359 ~~~i~l-~~~~~l~~ydl~~~~ 379 (416)
++.|++ ..+.+++.||+++..
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred CCEEEEeecCceEEEEEccccc
Confidence 556777 678899999999765
No 90
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=36.64 E-value=36 Score=32.22 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=31.5
Q ss_pred ccccCCHHHHHHHHccCCh--------hhhhhhhcchHhHhhhhcC
Q 046579 30 ETIINNDDLLTEILLCLPI--------KSLLKFKAVSKHWLSLISN 67 (416)
Q Consensus 30 ~~~~LPddll~eIL~rLP~--------~~l~r~~~VcK~W~~li~s 67 (416)
..+.||.++|.+|+.|.-- ++++.+..||+.|+.+..+
T Consensus 44 ~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 44 LWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4568999999999999862 3788899999999987653
No 91
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=34.64 E-value=1.5e+02 Score=30.63 Aligned_cols=116 Identities=12% Similarity=0.119 Sum_probs=67.4
Q ss_pred cEEEccEEEEEeeCCcEEEEEcCCceEee----cCCCCCCCcccccceeEEEEeCCeEEEEEEecCCcCeEEEEEEeCCC
Q 046579 235 GVFWNGAIHWVSTHGSSLYFDVDQEKLRE----MPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALFNVYEMKTDY 310 (416)
Q Consensus 235 ~v~~~G~lyw~~~~~~il~fD~~~e~~~~----i~~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~~~l~iW~l~~~~ 310 (416)
.--..-.||.-..++.|.-||...-.|+. +..|. .+...+..+.--.|++++|.+.++ ..++.|.++...
T Consensus 60 ~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~----aH~nAifDl~wapge~~lVsasGD--sT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 60 APNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPL----AHKNAIFDLKWAPGESLLVSASGD--STIRPWDVKTSR 133 (720)
T ss_pred CCCccceEEEecCCCceeeecchhhhcchhhhhhcccc----cccceeEeeccCCCceeEEEccCC--ceeeeeeeccce
Confidence 33345577877788899999999888871 12221 111222334334699999998765 689999999631
Q ss_pred CCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEE--eeCCeEEEEEcCCCcEEE
Q 046579 311 SGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVL--HLPKKAVRYNLKDRTFKK 382 (416)
Q Consensus 311 ~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l--~~~~~l~~ydl~~~~~~~ 382 (416)
- + -.++.+++ ...+.-+|+.. .+-.||. ..|++++.+|++-+.+..
T Consensus 134 l--~-G~~~~~GH-------------------~~SvkS~cf~~----~n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 134 L--V-GGRLNLGH-------------------TGSVKSECFMP----TNPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred e--e-cceeeccc-------------------ccccchhhhcc----CCCcceeeccCCCcEEEEEEeccchhh
Confidence 0 0 00011110 02334455554 2333444 357899999998777443
No 92
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=33.97 E-value=3.9e+02 Score=26.37 Aligned_cols=38 Identities=11% Similarity=0.303 Sum_probs=28.9
Q ss_pred CcEEEEee------CCeEEEEEcCCCcEEEeeecCCCCCCcchh
Q 046579 359 DSYLVLHL------PKKAVRYNLKDRTFKKLHDVAPAGNQAEDE 396 (416)
Q Consensus 359 ~~~i~l~~------~~~l~~ydl~~~~~~~v~~~~~~~~~~~~~ 396 (416)
|.+|++.. .-+-++||-+++++.++..|..+-..+|++
T Consensus 238 G~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPed 281 (448)
T PF12458_consen 238 GNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPED 281 (448)
T ss_pred CcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCcc
Confidence 55676642 238999999999999999887766666654
No 93
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=33.95 E-value=4.5e+02 Score=25.54 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=62.0
Q ss_pred EEccEEEEEeeC----CcEEEEEcCCce---EeecCCCCCCCcccccceeEEEEeCCeEEEEEEecCCcCeEEEEEEeCC
Q 046579 237 FWNGAIHWVSTH----GSSLYFDVDQEK---LREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALFNVYEMKTD 309 (416)
Q Consensus 237 ~~~G~lyw~~~~----~~il~fD~~~e~---~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~~~l~iW~l~~~ 309 (416)
..++.+|.++.. +.|++.|+++-. |..+-.|+... .....+...++.|.+....+. ...|.|+.++
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~----~~l~~~~~~~~~Lvl~~~~~~-~~~l~v~~~~-- 357 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED----VSLEDVSLFKDYLVLSYRENG-SSRLRVYDLD-- 357 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS----EEEEEEEEETTEEEEEEEETT-EEEEEEEETT--
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc----eeEEEEEEECCEEEEEEEECC-ccEEEEEECC--
Confidence 447789988765 379999998754 55332332211 122335556888887766542 2345555444
Q ss_pred CCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEEe-----eCCeEEEEEcCCCcEEEee
Q 046579 310 YSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVLH-----LPKKAVRYNLKDRTFKKLH 384 (416)
Q Consensus 310 ~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~-----~~~~l~~ydl~~~~~~~v~ 384 (416)
..|.. ..+.++.. ..+.++... .+++.+++. ....++.||+.+++.+.+.
T Consensus 358 -~~~~~-~~~~~p~~---------------------g~v~~~~~~--~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 358 -DGKES-REIPLPEA---------------------GSVSGVSGD--FDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp --TEEE-EEEESSSS---------------------SEEEEEES---TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred -CCcEE-eeecCCcc---------------------eEEeccCCC--CCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 23432 22322211 112233221 134445553 3579999999999998875
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.63 E-value=5e+02 Score=25.93 Aligned_cols=183 Identities=14% Similarity=0.196 Sum_probs=88.3
Q ss_pred ccCCcceEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceEEEEEECCCCCeeeccCCCccccccc
Q 046579 152 NPTNKQYTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWRLSGGSFTAPSVIN 231 (416)
Q Consensus 152 NP~T~~~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~~~~~~~~ 231 (416)
+|-++.|...--++.... + .....+.+.|.. .|.++... ...+.+|++.+.+=+..-..+. ...
T Consensus 8 t~e~~~w~~~~~~~~~ke-~--~~vssl~fsp~~--P~d~aVt~--------S~rvqly~~~~~~~~k~~srFk---~~v 71 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKE-H--NSVSSLCFSPKH--PYDFAVTS--------SVRVQLYSSVTRSVRKTFSRFK---DVV 71 (487)
T ss_pred Cccchhhhhhcccccccc-c--CcceeEecCCCC--CCceEEec--------ccEEEEEecchhhhhhhHHhhc---cce
Confidence 555666665533322111 1 223346666753 34433322 2389999998875432100000 011
Q ss_pred cCCcEEEccEEEEEeeC-CcEEEEEcCCceE-eecCCCCCCCcccccceeEEEEeCCeEEEEEEecCCcCeEEEEEEeCC
Q 046579 232 FRGGVFWNGAIHWVSTH-GSSLYFDVDQEKL-REMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALFNVYEMKTD 309 (416)
Q Consensus 232 ~~~~v~~~G~lyw~~~~-~~il~fD~~~e~~-~~i~~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~~~l~iW~l~~~ 309 (416)
..-.+..||.|....+. +.+-.||+.+... ..+..-..|. ........++. .++...+ .....+|.+.+.
T Consensus 72 ~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv-----~~~~f~~~d~t-~l~s~sD--d~v~k~~d~s~a 143 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPV-----HVTKFSPQDNT-MLVSGSD--DKVVKYWDLSTA 143 (487)
T ss_pred eEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCce-----eEEEecccCCe-EEEecCC--CceEEEEEcCCc
Confidence 22334457988876654 6788999665222 2222211111 11112223443 3443333 368999999964
Q ss_pred CCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEE--eeCCeEEEEEcCCCcEEEeeecC
Q 046579 310 YSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVL--HLPKKAVRYNLKDRTFKKLHDVA 387 (416)
Q Consensus 310 ~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l--~~~~~l~~ydl~~~~~~~v~~~~ 387 (416)
. + ...+ ..- . .+++-..+... ++-|++ +-|+.+=.||.++.+ .++-+++
T Consensus 144 ~---v-~~~l--~~h-------t-----------DYVR~g~~~~~----~~hivvtGsYDg~vrl~DtR~~~-~~v~eln 194 (487)
T KOG0310|consen 144 Y---V-QAEL--SGH-------T-----------DYVRCGDISPA----NDHIVVTGSYDGKVRLWDTRSLT-SRVVELN 194 (487)
T ss_pred E---E-EEEe--cCC-------c-----------ceeEeeccccC----CCeEEEecCCCceEEEEEeccCC-ceeEEec
Confidence 3 2 2222 110 0 22344444332 333444 247788889998886 5555443
No 95
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=33.55 E-value=3.8e+02 Score=24.61 Aligned_cols=145 Identities=10% Similarity=0.140 Sum_probs=78.4
Q ss_pred ceEEEEEECCCCCeeeccCCCccccccccCCcEEEccEEEEEeeC-CcEEEEEcCC-ceEeecCCCCCCCcccccceeEE
Q 046579 204 HYQIEIYSSKTGPWRLSGGSFTAPSVINFRGGVFWNGAIHWVSTH-GSSLYFDVDQ-EKLREMPMPPIPDEWEERRHQYF 281 (416)
Q Consensus 204 ~~~~~vyss~t~~W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~-~~il~fD~~~-e~~~~i~~P~~~~~~~~~~~~~l 281 (416)
.-.+..|+..+++=.... +.+. .........+++.+|-+... +..+.||..+ +.-..++.|. .+| -|
T Consensus 67 ~S~l~~~d~~tg~~~~~~-~l~~--~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~--EGW------GL 135 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSV-PLPP--RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG--EGW------GL 135 (264)
T ss_dssp EEEEEEEETTTSSEEEEE-E-TT--T--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SS--S--------EE
T ss_pred cEEEEEEECCCCcEEEEE-ECCc--cccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCC--cce------EE
Confidence 457889999998643221 1111 22334556778899999986 4679999986 3444455542 233 15
Q ss_pred EEeCCeEEEEEEecCCcCeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcE
Q 046579 282 GESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSY 361 (416)
Q Consensus 282 ~~~~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (416)
+..+..|.+- ++ .=.|+.++- .....+.+|....-....+.+ ...-++ ++.
T Consensus 136 t~dg~~Li~S---DG---S~~L~~~dP--~~f~~~~~i~V~~~g~pv~~L--------------NELE~i-------~G~ 186 (264)
T PF05096_consen 136 TSDGKRLIMS---DG---SSRLYFLDP--ETFKEVRTIQVTDNGRPVSNL--------------NELEYI-------NGK 186 (264)
T ss_dssp EECSSCEEEE----S---SSEEEEE-T--TT-SEEEEEE-EETTEE---E--------------EEEEEE-------TTE
T ss_pred EcCCCEEEEE---CC---ccceEEECC--cccceEEEEEEEECCEECCCc--------------EeEEEE-------cCE
Confidence 5445556654 22 224566663 245666777554322111111 112222 335
Q ss_pred EEEe--eCCeEEEEEcCCCcEEEeeecCC
Q 046579 362 LVLH--LPKKAVRYNLKDRTFKKLHDVAP 388 (416)
Q Consensus 362 i~l~--~~~~l~~ydl~~~~~~~v~~~~~ 388 (416)
||-. ....++..|+.|+++..+-++.+
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~ 215 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSG 215 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HH
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhH
Confidence 6664 46799999999999998887654
No 96
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=33.09 E-value=5e+02 Score=25.84 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=57.7
Q ss_pred CCcEEEEEcCCceEeecCCCCCCCcccccceeEEEEe-CCeEEEEEEecCCcCeEEEEEEeCCCCCceEEEEEccccccc
Q 046579 248 HGSSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGES-RGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGVTY 326 (416)
Q Consensus 248 ~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~-~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~~~i~~~~l~~ 326 (416)
+..+.+||+.+.+...+..|-... .+.+..+.++ ++...++. + ....|.| |..-.++|.-..+|.
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e---~~~~e~FeVShd~~fia~~--G-~~G~I~l--LhakT~eli~s~Kie------ 344 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVE---EKSMERFEVSHDSNFIAIA--G-NNGHIHL--LHAKTKELITSFKIE------ 344 (514)
T ss_pred ceEEEEeeccccccccccCCCCcc---cchhheeEecCCCCeEEEc--c-cCceEEe--ehhhhhhhhheeeec------
Confidence 346889999999999887664322 1222233333 44432222 1 1123333 332234565444432
Q ss_pred ccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEE-eeCCeEEEEEcCCCcEEEeeecCC
Q 046579 327 VFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVL-HLPKKAVRYNLKDRTFKKLHDVAP 388 (416)
Q Consensus 327 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l-~~~~~l~~ydl~~~~~~~v~~~~~ 388 (416)
..+.-++|.. ++..|++ +..+.++.+|++++.......-++
T Consensus 345 -----------------G~v~~~~fsS----dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G 386 (514)
T KOG2055|consen 345 -----------------GVVSDFTFSS----DSKELLASGGTGEVYVWNLRQNSCLHRFVDDG 386 (514)
T ss_pred -----------------cEEeeEEEec----CCcEEEEEcCCceEEEEecCCcceEEEEeecC
Confidence 2233445542 4555555 567899999999998776664333
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=31.96 E-value=3.6e+02 Score=25.30 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=32.3
Q ss_pred CCcEEEEe-eCCeEEEEEcCCCcEEEeeecCCCCCCcchhhhhhhcccccccc
Q 046579 358 DDSYLVLH-LPKKAVRYNLKDRTFKKLHDVAPAGNQAEDESALQFRWFDAFQY 409 (416)
Q Consensus 358 ~~~~i~l~-~~~~l~~ydl~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~y 409 (416)
++..||.. .++.+=.|||.+++...|.-=+.+ -....|+..+.|
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~p--------vkt~~wv~~~~~ 127 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAP--------VKTCHWVPGMNY 127 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCeeeeeecccc--------eeEEEEecCCCc
Confidence 57778884 688999999999999998832221 235677777764
No 98
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=31.51 E-value=2.8e+02 Score=26.53 Aligned_cols=91 Identities=9% Similarity=-0.021 Sum_probs=47.2
Q ss_pred EEEEccCCcc---eEecCCCCcCCCcceeeeeEEEEeCCCCCCCeEEEEEEecCCCCCCceEEEEEECCCCCeee-ccCC
Q 046579 148 YYVYNPTNKQ---YTILPRLHVDRGIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLRDGHYQIEIYSSKTGPWRL-SGGS 223 (416)
Q Consensus 148 ~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~ 223 (416)
+-+|++.|=+ -+.||+-+...... .....++.- .+.|-.|. +.. +..++.|-+...++--. +..+
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~-~~~~~~ls~----dgk~~~V~--N~T----Pa~SVtVVDl~~~kvv~ei~~P 137 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVP-YKNMFALSA----DGKFLYVQ--NFT----PATSVTVVDLAAKKVVGEIDTP 137 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS---GGGEEE-T----TSSEEEEE--EES----SSEEEEEEETTTTEEEEEEEGT
T ss_pred EEEEecCcCcccceEecCCcchheecc-cccceEEcc----CCcEEEEE--ccC----CCCeEEEEECCCCceeeeecCC
Confidence 7899999854 34577643211111 112223331 23454432 222 45689999998886532 2211
Q ss_pred CccccccccCCcEE--EccEEEEEeeCCcEEEEEcC
Q 046579 224 FTAPSVINFRGGVF--WNGAIHWVSTHGSSLYFDVD 257 (416)
Q Consensus 224 ~~~~~~~~~~~~v~--~~G~lyw~~~~~~il~fD~~ 257 (416)
.|-.+| -+..++-++.++.++.+.+.
T Consensus 138 --------GC~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 138 --------GCWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp --------SEEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred --------CEEEEEecCCCceEEEecCCceEEEEEC
Confidence 111121 24568888888888777765
No 99
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=31.03 E-value=6.1e+02 Score=26.15 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=54.8
Q ss_pred EEEEEECCCCCeeeccCCCccc-cccccC---CcEEEccEEEEEeeCCcEEEEEcCCceEeecCCCCCCCcccccceeEE
Q 046579 206 QIEIYSSKTGPWRLSGGSFTAP-SVINFR---GGVFWNGAIHWVSTHGSSLYFDVDQEKLREMPMPPIPDEWEERRHQYF 281 (416)
Q Consensus 206 ~~~vyss~t~~W~~~~~~~~~~-~~~~~~---~~v~~~G~lyw~~~~~~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l 281 (416)
.+.+-.....+|+.+....++. .+.... =+|.-||++++- ..|-.+++..+.|..|+.|...
T Consensus 209 Gvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R---~GVsRqNp~GdsWkdI~tP~~a----------- 274 (705)
T KOG3669|consen 209 GVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYR---EGVSRQNPEGDSWKDIVTPRQA----------- 274 (705)
T ss_pred cccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEE---ecccccCCCCchhhhccCcccc-----------
Confidence 4455556677899875443332 111111 145668876653 3577889999999988777421
Q ss_pred EEeCCeEEEEEEecCCcCeEEEEEEeCCCCCceEEEEEc
Q 046579 282 GESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVD 320 (416)
Q Consensus 282 ~~~~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~~~i~ 320 (416)
+-++++.-+ .-.||.++.+..-|..+..|+
T Consensus 275 ------~~~v~iSvG---t~t~Waldndg~lwfrrgii~ 304 (705)
T KOG3669|consen 275 ------LEPVCISVG---TQTLWALDNDGNLWFRRGIIS 304 (705)
T ss_pred ------cceEEEEec---cceEEEEecCCcEEEEecccc
Confidence 112222211 345899988766788777765
No 100
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=26.66 E-value=46 Score=30.38 Aligned_cols=39 Identities=15% Similarity=0.051 Sum_probs=30.5
Q ss_pred ccccccCCHHHHHHHHccCC-hhhhhhhhcchHhHhhhhc
Q 046579 28 SVETIINNDDLLTEILLCLP-IKSLLKFKAVSKHWLSLIS 66 (416)
Q Consensus 28 ~~~~~~LPddll~eIL~rLP-~~~l~r~~~VcK~W~~li~ 66 (416)
....-.||.+++.+||.||| -.+|..++.|-..-..+++
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHH
Confidence 44456899999999999999 7799888887655555554
No 101
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=26.01 E-value=4.9e+02 Score=23.41 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=59.1
Q ss_pred EEEEEECCCC-CeeeccCCCccccccccCCcEE--EccEEEEEeeC---Cc-EEEEEcC-CceEeec---CCCCCCCccc
Q 046579 206 QIEIYSSKTG-PWRLSGGSFTAPSVINFRGGVF--WNGAIHWVSTH---GS-SLYFDVD-QEKLREM---PMPPIPDEWE 274 (416)
Q Consensus 206 ~~~vyss~t~-~W~~~~~~~~~~~~~~~~~~v~--~~G~lyw~~~~---~~-il~fD~~-~e~~~~i---~~P~~~~~~~ 274 (416)
....|+.+.+ .|+......... ......+. -+|.+|.+... .. .++.-.. .++|+.. .+|...
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~~~~--~~~e~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~---- 208 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIPDGQ--GECEPSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPN---- 208 (275)
T ss_dssp EEEEEESSTTSSEEEEEECECSE--EEEEEEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCC----
T ss_pred eEEEEeCCCCceeeccccccccC--CcceeEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCccc----
Confidence 3444555544 598764322111 11222222 47888877654 22 3444443 4688864 333321
Q ss_pred ccceeEEEE-eCCeEEEEEEecCCcCeEEEEEEeCCCCCceEEEEEcc
Q 046579 275 ERRHQYFGE-SRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDL 321 (416)
Q Consensus 275 ~~~~~~l~~-~~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~~~i~~ 321 (416)
....+.. .+|+|.++.........+.|+.-+++...|.....|.-
T Consensus 209 --~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~ 254 (275)
T PF13088_consen 209 --SSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDD 254 (275)
T ss_dssp --EEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEE
T ss_pred --CCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeC
Confidence 1122334 48888888763223467999988877778998888754
No 102
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.35 E-value=7.5e+02 Score=25.32 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=36.7
Q ss_pred EEEEEECCCCC--eeeccCCCccccccccCCcEEEccEEEEEee------CCcEEEEEcCC--ceEeecCCC
Q 046579 206 QIEIYSSKTGP--WRLSGGSFTAPSVINFRGGVFWNGAIHWVST------HGSSLYFDVDQ--EKLREMPMP 267 (416)
Q Consensus 206 ~~~vyss~t~~--W~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~------~~~il~fD~~~--e~~~~i~~P 267 (416)
.+..++..|++ |+......... ......++..+|.+|.-.. ++.|.+||.++ ..|..-..|
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~-~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAG-YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred EEEEEECCCCCEEeeccccccccc-ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence 56666666664 87542211111 1234577888999887653 45799999987 456644344
No 103
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=23.94 E-value=1.1e+03 Score=26.79 Aligned_cols=71 Identities=14% Similarity=0.225 Sum_probs=40.5
Q ss_pred cEEEEEcCCceEeecCCCCCCCcccccceeEEEEeCCeEEEEEEecCCcCeEEEEEEeCCCCCceEEEEEccccc
Q 046579 250 SSLYFDVDQEKLREMPMPPIPDEWEERRHQYFGESRGHLHLIEIYGPCTALFNVYEMKTDYSGWFVKYRVDLGGV 324 (416)
Q Consensus 250 ~il~fD~~~e~~~~i~~P~~~~~~~~~~~~~l~~~~G~L~~v~~~~~~~~~l~iW~l~~~~~~W~~~~~i~~~~l 324 (416)
.|+-|.-...+-..+.+|.+.++..... ..=..++.+..+.........+.+|...++ .|-++..+..++-
T Consensus 267 ~IvffErNGL~hg~f~l~~p~de~~ve~--L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny--hWYLKq~l~~~~~ 337 (1265)
T KOG1920|consen 267 DIVFFERNGLRHGEFVLPFPLDEKEVEE--LAWNSNSDILAVVTSNLENSLVQLWTTGNY--HWYLKQELQFSQK 337 (1265)
T ss_pred cEEEEecCCccccccccCCcccccchhe--eeecCCCCceeeeecccccceEEEEEecCe--EEEEEEEEecccc
Confidence 5777777666655554553322210001 111334444444333334456999999976 6999999877653
No 104
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=23.86 E-value=92 Score=23.58 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=25.2
Q ss_pred CeEEEeeeCceEEeeecCCCCCCceEEEEccCCcceE
Q 046579 123 GIKVLQSCNGLLLCSSSRAYQPRRNYYVYNPTNKQYT 159 (416)
Q Consensus 123 ~~~~~~s~~GLvl~~~~~~~~~~~~~~V~NP~T~~~~ 159 (416)
+..++.+.+||.+-+..+...+..---||+|+|++.+
T Consensus 33 ~ikVieg~~GlFVaMPs~k~~~g~y~DI~~Pit~e~R 69 (94)
T PRK13259 33 DIRVIEGNNGLFIAMPSKRTPDGEFRDIAHPINSDTR 69 (94)
T ss_pred eeEEEECCCCeEEECcCcCCCCCcEEEEEccCCHHHH
Confidence 4678888999776665543322333579999998765
No 105
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=22.81 E-value=6.2e+02 Score=23.46 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=43.1
Q ss_pred CeEEEEEEeCCCCCceEEEEEcccccccccccchhccCCCCCCceeeeEEEEeecCCCCCCcEEEE-eeCCeEEEEEcCC
Q 046579 299 ALFNVYEMKTDYSGWFVKYRVDLGGVTYVFPEMIRTYLDPEDLHYYGYSILCVVREENDDDSYLVL-HLPKKAVRYNLKD 377 (416)
Q Consensus 299 ~~l~iW~l~~~~~~W~~~~~i~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l-~~~~~l~~ydl~~ 377 (416)
..+.||.+.. ..+|+.+..++-.+ ...++-++..+ .+.++-. ..+..+..|.-..
T Consensus 37 k~vriw~~~~-~~s~~ck~vld~~h-------------------krsVRsvAwsp----~g~~La~aSFD~t~~Iw~k~~ 92 (312)
T KOG0645|consen 37 KAVRIWSTSS-GDSWTCKTVLDDGH-------------------KRSVRSVAWSP----HGRYLASASFDATVVIWKKED 92 (312)
T ss_pred ceEEEEecCC-CCcEEEEEeccccc-------------------hheeeeeeecC----CCcEEEEeeccceEEEeecCC
Confidence 6899999996 55799998765311 02334444433 2443333 4566777777777
Q ss_pred CcEEEeeecCCCC
Q 046579 378 RTFKKLHDVAPAG 390 (416)
Q Consensus 378 ~~~~~v~~~~~~~ 390 (416)
++++.+..+++.+
T Consensus 93 ~efecv~~lEGHE 105 (312)
T KOG0645|consen 93 GEFECVATLEGHE 105 (312)
T ss_pred CceeEEeeeeccc
Confidence 7888777776654
No 106
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.33 E-value=33 Score=28.27 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=23.0
Q ss_pred ccCChh--hhhhhhcchHhHhhhhcCcccc
Q 046579 44 LCLPIK--SLLKFKAVSKHWLSLISNPIFS 71 (416)
Q Consensus 44 ~rLP~~--~l~r~~~VcK~W~~li~s~~F~ 71 (416)
+|+..+ ++..+.+||++-+++.+...|-
T Consensus 144 srvsikessv~klgsvcrrvyrifsha~fh 173 (223)
T KOG1852|consen 144 SRVSIKESSVAKLGSVCRRVYRIFSHAYFH 173 (223)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 466654 8899999999999999877773
No 107
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=22.27 E-value=2.7e+02 Score=27.63 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=22.2
Q ss_pred EEEE-eeCCeEEEEEcCCCcEEEeeecCC
Q 046579 361 YLVL-HLPKKAVRYNLKDRTFKKLHDVAP 388 (416)
Q Consensus 361 ~i~l-~~~~~l~~ydl~~~~~~~v~~~~~ 388 (416)
.|+. .....+++|||.+.++.++..+.+
T Consensus 272 ~i~~s~rrky~ysyDle~ak~~k~~~~~g 300 (514)
T KOG2055|consen 272 VIFTSGRRKYLYSYDLETAKVTKLKPPYG 300 (514)
T ss_pred EEEecccceEEEEeeccccccccccCCCC
Confidence 5555 456799999999999999986544
No 108
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=22.03 E-value=1.7e+02 Score=19.16 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=10.5
Q ss_pred CCcEEEEeeC------CeEEEEEc
Q 046579 358 DDSYLVLHLP------KKAVRYNL 375 (416)
Q Consensus 358 ~~~~i~l~~~------~~l~~ydl 375 (416)
+++.||...+ ..+.+|||
T Consensus 31 ~~n~IYf~~~~~~~~~~~~~Vy~m 54 (54)
T PF03478_consen 31 KGNCIYFLDDSSDESDRDIGVYNM 54 (54)
T ss_pred cCCEEEEecCCCCCCCCCEEEEeC
Confidence 4556666444 56666664
No 109
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=21.67 E-value=1.6e+02 Score=29.54 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=60.8
Q ss_pred EEEEccCCcceEecCCCCcCC----CcceeeeeEEEEeCCCCCCCeEEEEEEecCCCC--CCceEEEEEECCCCCeeecc
Q 046579 148 YYVYNPTNKQYTILPRLHVDR----GIFRSIFGVNLAFDPSKSAHYKVICVRNCDSLR--DGHYQIEIYSSKTGPWRLSG 221 (416)
Q Consensus 148 ~~V~NP~T~~~~~LP~~~~~~----~~~~~~~~~~l~~d~~~~~~ykVv~~~~~~~~~--~~~~~~~vyss~t~~W~~~~ 221 (416)
+..=-|.|-+|.++|+..... .....-.+..|++++. + -.| +-..++. .....+-.|+-+.+.|.+++
T Consensus 231 ~i~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~-~--~Ci---YLYGGWdG~~~l~DFW~Y~v~e~~W~~iN 304 (723)
T KOG2437|consen 231 YISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQ-T--ECV---YLYGGWDGTQDLADFWAYSVKENQWTCIN 304 (723)
T ss_pred hhhcccccccccccCchhhcccccccCccccCcceEEEeCC-C--cEE---EEecCcccchhHHHHHhhcCCcceeEEee
Confidence 344567788888887765210 0011123445666654 1 122 2222221 12224567899999999985
Q ss_pred CCCccccccccCCcEEEcc--EEEEEee------------CCcEEEEEcCCceEeecCCCC
Q 046579 222 GSFTAPSVINFRGGVFWNG--AIHWVST------------HGSSLYFDVDQEKLREMPMPP 268 (416)
Q Consensus 222 ~~~~~~~~~~~~~~v~~~G--~lyw~~~------------~~~il~fD~~~e~~~~i~~P~ 268 (416)
.....+..-.+.+.|.--. +||-+.. +..+-.||.++..|..+..-.
T Consensus 305 ~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt 365 (723)
T KOG2437|consen 305 RDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDT 365 (723)
T ss_pred cCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccc
Confidence 4332221112333443322 5665532 125889999999999886543
No 110
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.33 E-value=76 Score=25.80 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=15.9
Q ss_pred cEEEccEEEEEeeCC-----cEEEEEcCC
Q 046579 235 GVFWNGAIHWVSTHG-----SSLYFDVDQ 258 (416)
Q Consensus 235 ~v~~~G~lyw~~~~~-----~il~fD~~~ 258 (416)
-+.-+|++||+...- .|+.|+..+
T Consensus 43 Ell~GGSlYWVikg~i~~RQ~Il~i~~~~ 71 (137)
T PF07370_consen 43 ELLDGGSLYWVIKGQIQCRQRILDIEEVT 71 (137)
T ss_pred HhccCCcEEEEECCEEEEeeeeeeeeEec
Confidence 344588999998642 466776543
No 111
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=20.20 E-value=1.6e+02 Score=23.12 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=21.9
Q ss_pred CcEEEEeeCCeEEEEEcCCCcEEEee
Q 046579 359 DSYLVLHLPKKAVRYNLKDRTFKKLH 384 (416)
Q Consensus 359 ~~~i~l~~~~~l~~ydl~~~~~~~v~ 384 (416)
..+|++...+.+++||..++++-.+.
T Consensus 82 ~~vvl~~~~G~Vy~yd~~~~~l~~lA 107 (125)
T PF02393_consen 82 RLVVLVGESGRVYAYDPEDDRLYRLA 107 (125)
T ss_pred eEEEEEeCCCeEEEEEcCCCEEEEEe
Confidence 44677789999999999998887776
Done!