BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046581
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 152 bits (383), Expect = 5e-37, Method: Composition-based stats.
Identities = 65/99 (65%), Positives = 87/99 (87%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
LIKG WT EED+++IKLV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
EE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR 220
K WT+EEDR + + K+ G R WA+I++ + GR + W++ +R
Sbjct: 56 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMR 102
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 65/99 (65%), Positives = 87/99 (87%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
LIKG WT EED+++IKLV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
EE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDI 223
K WT+EEDR + + K+ G R WA+I++ + GR + W++ +R +
Sbjct: 110 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 151 bits (382), Expect = 7e-37, Method: Composition-based stats.
Identities = 64/99 (64%), Positives = 85/99 (85%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
L+KG WT EED+K+I+LVK+YG ++W I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
EE+RI+ EAH +GNRWAEIAK +PGRT+N++KNHWN+T
Sbjct: 65 EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNST 103
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR 220
K WT+EEDR + + K G R WA+I++ + GR + W++ ++
Sbjct: 59 KSSWTEEEDRIIFEAHKVLGNR-WAEIAKLLPGRTDNAVKNHWNSTIK 105
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 151 bits (381), Expect = 8e-37, Method: Composition-based stats.
Identities = 65/99 (65%), Positives = 87/99 (87%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
LIKG WT EED+++IKLV++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
EE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR 220
K WT+EEDR + + K+ G R WA+I++ + GR + W++ +R
Sbjct: 56 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMR 102
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 85/99 (85%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSE 230
L KG WT EED+++I+ V++YG ++W+ I++ + GR GKQCRERWHNHL P++KK SW+E
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
EE+RI+ +AH R+GNRWAEIAK +PGRT+N++KNHWN+T
Sbjct: 85 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDI 223
K WT+EEDR + + K+ G R WA+I++ + GR + W++ +R +
Sbjct: 79 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 68/98 (69%)
Query: 172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEE 231
+KG +T+ ED + + VK+ G + W +I+ + R+ KQCRERW NHL P + K +W+ E
Sbjct: 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 232 EERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
E+ + + ++G++W+ IAK IPGRT+N+IKN WN++
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 170 ALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDS 227
A++K WT EED + + + G KW+ I++ + GR + RW++ + I +S
Sbjct: 51 AVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNS 107
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 66/94 (70%)
Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEE 232
K ++T+EED KL +LV +YG + W +IS+ M R +QCRERW+N++ P ++ D WS EE
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 233 ERILVEAHARIGNRWAEIAKHIPGRTENSIKNHW 266
+ +L + +A G +W +I+K + R++N+I+N W
Sbjct: 61 DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 44/48 (91%)
Query: 222 DIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
++KK SW+EEE+RIL +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct: 2 EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 49
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDI 223
K WT+EEDR L + K+ G R WA+I++ + GR + W++ +R +
Sbjct: 5 KTSWTEEEDRILYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/52 (63%), Positives = 44/52 (84%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
LIKG WT EED++LIKLV++YG ++W+ I++ + GR GKQCRERWHNHL P+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 225 KDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWN 267
K W++EE++ L++ + G RW+ IAKH+ GR + W+
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 43/47 (91%)
Query: 223 IKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269
+KK SW+EEE+RI+ +AH R+GNRWAEIAK +PGRT+N+IKNHWN+T
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 47
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDI 223
K WT+EEDR + + K+ G R WA+I++ + GR + W++ +R +
Sbjct: 3 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 79.3 bits (194), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 44/52 (84%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
LIKG WT EED+++IKLV++YG ++W+ I++ + GR GKQCRERWHNHL P+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 32.3 bits (72), Expect = 0.53, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 225 KDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWN 267
K W++EE++ +++ + G RW+ IAKH+ GR + W+
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEE 232
K ++T EED L + V Q+G W I+ R +QCR+RW N+L P I W+ EE
Sbjct: 11 KQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 233 ERILVEAHARIGNRWAEIAKHIPGRTENSIKNHW 266
+ +LV+ G +WA IAK PGRT+ IKN W
Sbjct: 70 DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHW 266
KK ++ EE+ +L A A+ G+ W IA P R ++ W
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRW 52
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 77.4 bits (189), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 44/52 (84%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
LIKG WT EED+++I+LV++YG ++W+ I++ + GR GKQCRERWHNHL P+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 225 KDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWN 267
K W++EE++ ++E + G RW+ IAKH+ GR + W+
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human
Cell Division Cycle 5-Like Protein
Length = 70
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 176 WTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWS 229
W + ED L V +YG +W++I+ + ++ KQC+ RW+ L P IKK WS
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
L K +WT EED KL KLV+Q G W I+ + R QC+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%)
Query: 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222
L K +WT EED KL KLV+Q G W I+ + R QC+ RW L P+
Sbjct: 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 166 GASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERW 215
G+S + K +WT EED +L LV+Q+G + W ++ R +QC+ RW
Sbjct: 1 GSSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRW 50
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2,
Northeast Structural Genomics Consortium Target Hr8254a
Length = 73
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 176 WTDEEDRKLIKLVKQYGV---RKWAQISERMAGRAGKQCRERW 215
WT EE + L + +K Y V +W +I+E + GR K C +R+
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRY 48
Score = 28.9 bits (63), Expect = 6.9, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 228 WSEEEERILVEA----HARIGNRWAEIAKHIPGRTE 259
W+ EE+++L +A RW +IA+ +PGRT+
Sbjct: 6 WTTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTK 41
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 31.6 bits (70), Expect = 0.88, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 228 WSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNH 265
W+ EE+ + + A+ G RW +I+K I RT +K++
Sbjct: 12 WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSY 49
>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
Transcription Factor From Antirrhinum Majus
Length = 93
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 228 WSEEE----ERILVEAHARIGNRWAEIAKHIPGRTENSIKNHW 266
WS +E ER L +RWA +A+ + GRT +K H+
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY 53
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 176 WTDEEDRKLIKLVKQYGVRKWAQI 199
WT EED KL+ V +YG W QI
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 176 WTDEEDRKLIKLVKQYGVRKWAQI 199
WT EED KL+ V +YG W QI
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 226 DSWSEEEERILVEAHARIG-NRWAEIAKHI-PGRTENSIKNHWNAT 269
++W +EE +L++A +G WA+IA ++ RT+ ++H+ T
Sbjct: 10 ENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 28.9 bits (63), Expect = 7.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 176 WTDEEDRKLIKLVKQY-----GVRKWAQISERMAGRAGKQ 210
WT EE +KL +L+ +Y R+W +I++ + R KQ
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQ 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,658,451
Number of Sequences: 62578
Number of extensions: 413845
Number of successful extensions: 1106
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 56
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)