Query 046581
Match_columns 470
No_of_seqs 319 out of 2087
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 00:02:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 4E-41 1.4E-45 308.0 10.6 153 106-273 5-158 (159)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 1.6E-35 5.5E-40 262.1 12.2 126 139-273 1-127 (128)
3 1gv2_A C-MYB, MYB proto-oncoge 100.0 5.4E-32 1.9E-36 231.4 11.6 104 170-273 1-104 (105)
4 2k9n_A MYB24; R2R3 domain, DNA 100.0 6.8E-32 2.3E-36 232.3 12.3 104 173-276 1-104 (107)
5 3osg_A MYB21; transcription-DN 100.0 8.8E-31 3E-35 231.6 12.6 105 168-273 6-110 (126)
6 3zqc_A MYB3; transcription-DNA 100.0 3.5E-31 1.2E-35 235.5 9.4 108 172-279 1-108 (131)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 1.9E-28 6.4E-33 224.0 7.0 115 171-285 4-119 (159)
8 3zqc_A MYB3; transcription-DNA 99.9 3.8E-26 1.3E-30 203.0 6.6 128 107-254 2-130 (131)
9 1gv2_A C-MYB, MYB proto-oncoge 99.9 2.9E-25 9.9E-30 189.7 7.1 101 106-222 3-104 (105)
10 2k9n_A MYB24; R2R3 domain, DNA 99.9 4.2E-25 1.4E-29 189.9 6.5 101 107-223 1-102 (107)
11 1h8a_C AMV V-MYB, MYB transfor 99.9 8.6E-25 3E-29 193.2 7.5 119 88-222 8-127 (128)
12 3osg_A MYB21; transcription-DN 99.9 8.8E-25 3E-29 193.1 6.4 101 103-220 7-108 (126)
13 2dim_A Cell division cycle 5-l 99.8 5.9E-21 2E-25 152.5 5.2 67 167-233 3-69 (70)
14 1ign_A Protein (RAP1); RAP1,ye 99.8 5.1E-19 1.8E-23 170.9 9.7 105 169-273 4-200 (246)
15 2d9a_A B-MYB, MYB-related prot 99.7 3E-17 1E-21 127.1 6.7 57 168-224 3-59 (60)
16 2juh_A Telomere binding protei 99.7 4.8E-17 1.6E-21 143.3 8.0 84 166-249 10-103 (121)
17 1gvd_A MYB proto-oncogene prot 99.7 7.8E-17 2.7E-21 121.3 5.2 52 171-222 1-52 (52)
18 1guu_A C-MYB, MYB proto-oncoge 99.6 1E-16 3.6E-21 120.5 5.1 52 171-222 1-52 (52)
19 1ity_A TRF1; helix-turn-helix, 99.6 1.7E-16 5.9E-21 126.3 6.5 63 167-229 4-68 (69)
20 2llk_A Cyclin-D-binding MYB-li 99.6 1E-16 3.4E-21 129.8 5.0 60 211-271 9-68 (73)
21 2din_A Cell division cycle 5-l 99.6 1.2E-16 4.2E-21 126.0 4.7 60 166-227 2-61 (66)
22 2roh_A RTBP1, telomere binding 99.6 5.4E-16 1.8E-20 136.8 8.5 79 168-246 26-114 (122)
23 2llk_A Cyclin-D-binding MYB-li 99.6 5.3E-16 1.8E-20 125.5 6.4 61 161-224 11-71 (73)
24 1x41_A Transcriptional adaptor 99.6 1.1E-15 3.8E-20 118.6 6.5 55 168-222 3-57 (60)
25 3sjm_A Telomeric repeat-bindin 99.6 1E-15 3.6E-20 120.7 5.4 54 171-224 9-64 (64)
26 2din_A Cell division cycle 5-l 99.5 4.4E-15 1.5E-19 117.1 6.2 58 218-276 2-59 (66)
27 2cu7_A KIAA1915 protein; nucle 99.5 5.1E-15 1.7E-19 118.8 6.7 58 219-276 3-60 (72)
28 2cu7_A KIAA1915 protein; nucle 99.5 3.5E-15 1.2E-19 119.7 5.7 58 167-225 3-60 (72)
29 1w0t_A Telomeric repeat bindin 99.5 3.8E-15 1.3E-19 112.7 5.4 49 172-220 1-51 (53)
30 2yum_A ZZZ3 protein, zinc fing 99.5 5.4E-15 1.8E-19 119.3 6.5 61 168-228 3-68 (75)
31 2elk_A SPCC24B10.08C protein; 99.5 7.6E-15 2.6E-19 113.3 6.4 52 168-219 4-56 (58)
32 2dim_A Cell division cycle 5-l 99.5 1.3E-14 4.4E-19 115.6 5.5 65 220-284 4-69 (70)
33 2d9a_A B-MYB, MYB-related prot 99.5 2.3E-14 8E-19 110.8 5.6 54 220-273 3-57 (60)
34 1guu_A C-MYB, MYB proto-oncoge 99.5 5.3E-14 1.8E-18 105.7 6.1 50 223-272 1-51 (52)
35 1w0t_A Telomeric repeat bindin 99.4 1.2E-13 3.9E-18 104.5 6.3 49 224-272 1-52 (53)
36 1gvd_A MYB proto-oncogene prot 99.4 1.3E-13 4.4E-18 103.7 5.8 49 223-271 1-50 (52)
37 1x41_A Transcriptional adaptor 99.4 1.8E-13 6E-18 106.2 6.0 53 220-272 3-56 (60)
38 1ity_A TRF1; helix-turn-helix, 99.4 2.9E-13 1E-17 107.6 7.1 58 219-276 4-64 (69)
39 2ckx_A NGTRF1, telomere bindin 99.4 8.5E-13 2.9E-17 109.2 8.3 68 174-241 1-78 (83)
40 2yum_A ZZZ3 protein, zinc fing 99.4 4.2E-13 1.4E-17 108.1 6.2 55 220-274 3-63 (75)
41 3sjm_A Telomeric repeat-bindin 99.4 8.4E-13 2.9E-17 104.0 6.7 51 223-273 9-62 (64)
42 2aje_A Telomere repeat-binding 99.3 6.5E-13 2.2E-17 114.4 5.8 77 168-244 8-94 (105)
43 2elk_A SPCC24B10.08C protein; 99.3 1.3E-12 4.4E-17 100.7 6.3 49 221-269 5-55 (58)
44 2ltp_A Nuclear receptor corepr 99.0 1E-13 3.5E-18 115.8 0.0 56 218-273 9-64 (89)
45 2ltp_A Nuclear receptor corepr 99.0 1.2E-13 4E-18 115.5 0.0 55 166-221 9-63 (89)
46 2yus_A SWI/SNF-related matrix- 99.3 1.6E-12 5.4E-17 106.6 6.7 50 168-218 13-62 (79)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.8E-12 6E-17 104.9 4.1 53 168-220 13-68 (73)
48 2cqr_A RSGI RUH-043, DNAJ homo 99.3 4.4E-12 1.5E-16 102.5 6.3 51 221-271 14-68 (73)
49 1ign_A Protein (RAP1); RAP1,ye 99.3 3.3E-12 1.1E-16 123.6 5.7 106 105-220 6-198 (246)
50 2yus_A SWI/SNF-related matrix- 99.2 1.6E-11 5.6E-16 100.5 4.9 47 223-269 16-62 (79)
51 1x58_A Hypothetical protein 49 99.1 5.1E-11 1.8E-15 93.2 6.0 50 224-273 7-59 (62)
52 2juh_A Telomere binding protei 99.1 2.5E-11 8.7E-16 106.9 3.5 82 101-198 11-103 (121)
53 2ckx_A NGTRF1, telomere bindin 99.1 9.9E-11 3.4E-15 96.8 6.7 49 226-274 1-54 (83)
54 2cjj_A Radialis; plant develop 99.1 9.7E-11 3.3E-15 98.8 5.1 48 172-219 7-57 (93)
55 2cjj_A Radialis; plant develop 99.1 2.1E-10 7.1E-15 96.8 7.0 50 224-273 7-60 (93)
56 2aje_A Telomere repeat-binding 99.1 2.2E-10 7.6E-15 98.6 6.9 54 221-274 9-67 (105)
57 2roh_A RTBP1, telomere binding 99.0 7.3E-11 2.5E-15 104.1 3.8 77 102-193 26-113 (122)
58 1x58_A Hypothetical protein 49 98.9 1.1E-09 3.7E-14 85.7 4.0 49 171-220 6-57 (62)
59 2eqr_A N-COR1, N-COR, nuclear 98.8 2.9E-09 9.9E-14 82.8 5.4 49 224-272 11-59 (61)
60 3hm5_A DNA methyltransferase 1 98.8 7E-09 2.4E-13 87.4 6.9 65 209-277 18-87 (93)
61 2eqr_A N-COR1, N-COR, nuclear 98.8 7.5E-09 2.6E-13 80.4 6.0 46 172-218 11-56 (61)
62 2iw5_B Protein corest, REST co 98.7 1.6E-08 5.5E-13 97.2 7.8 90 181-273 92-181 (235)
63 2cqq_A RSGI RUH-037, DNAJ homo 98.7 2.4E-08 8.2E-13 80.4 5.7 52 169-221 4-58 (72)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.7 3.1E-08 1.1E-12 79.7 6.3 50 222-272 5-58 (72)
65 1wgx_A KIAA1903 protein; MYB D 98.5 1.2E-07 4.1E-12 76.6 5.7 53 224-276 7-63 (73)
66 2iw5_B Protein corest, REST co 98.4 3E-07 1E-11 88.5 6.9 49 171-220 131-179 (235)
67 1fex_A TRF2-interacting telome 98.4 2.1E-07 7.3E-12 72.1 4.6 48 173-220 2-58 (59)
68 1wgx_A KIAA1903 protein; MYB D 98.4 4.9E-07 1.7E-11 73.0 6.6 49 173-221 8-59 (73)
69 2xag_B REST corepressor 1; ami 98.4 7.9E-07 2.7E-11 94.0 9.9 48 225-272 380-427 (482)
70 3hm5_A DNA methyltransferase 1 98.2 5.9E-07 2E-11 75.7 2.7 56 161-221 22-82 (93)
71 1fex_A TRF2-interacting telome 98.0 6.9E-06 2.3E-10 63.6 5.6 46 225-270 2-57 (59)
72 1ug2_A 2610100B20RIK gene prod 98.0 9.3E-06 3.2E-10 67.8 5.8 48 226-273 34-84 (95)
73 1ofc_X ISWI protein; nuclear p 98.0 2.3E-05 8E-10 78.6 9.6 99 175-273 112-276 (304)
74 2yqk_A Arginine-glutamic acid 97.9 1.8E-05 6.2E-10 61.8 6.0 52 220-271 4-56 (63)
75 2lr8_A CAsp8-associated protei 97.0 2.6E-06 8.9E-11 67.6 0.0 46 226-272 15-63 (70)
76 2yqk_A Arginine-glutamic acid 97.8 3.4E-05 1.1E-09 60.2 5.5 49 168-217 4-53 (63)
77 4iej_A DNA methyltransferase 1 97.7 5.7E-05 2E-09 63.5 7.1 52 226-277 31-87 (93)
78 4eef_G F-HB80.4, designed hema 97.7 5.6E-06 1.9E-10 66.7 0.4 43 225-267 20-66 (74)
79 4eef_G F-HB80.4, designed hema 97.7 5.4E-06 1.9E-10 66.8 -0.2 44 173-216 20-66 (74)
80 4a69_C Nuclear receptor corepr 97.4 0.00016 5.4E-09 60.8 5.5 48 225-272 43-90 (94)
81 1ug2_A 2610100B20RIK gene prod 97.4 0.00012 4.3E-09 61.1 4.5 52 169-220 29-82 (95)
82 2crg_A Metastasis associated p 97.4 0.00027 9.1E-09 56.3 6.0 47 225-271 8-55 (70)
83 2xag_B REST corepressor 1; ami 97.3 0.00016 5.4E-09 76.6 5.6 45 173-218 380-424 (482)
84 4a69_C Nuclear receptor corepr 97.2 0.00025 8.6E-09 59.6 4.6 44 173-217 43-86 (94)
85 2crg_A Metastasis associated p 97.2 0.00034 1.1E-08 55.7 4.8 44 173-217 8-52 (70)
86 2lr8_A CAsp8-associated protei 96.3 5.5E-05 1.9E-09 60.0 0.0 45 175-220 16-62 (70)
87 2ebi_A DNA binding protein GT- 97.1 0.00028 9.6E-09 57.7 3.4 49 172-220 3-64 (86)
88 2ebi_A DNA binding protein GT- 97.0 0.00057 2E-08 55.8 4.7 51 225-275 4-68 (86)
89 4b4c_A Chromodomain-helicase-D 97.0 0.0022 7.5E-08 60.1 9.3 101 172-272 6-196 (211)
90 2y9y_A Imitation switch protei 96.7 0.0038 1.3E-07 64.2 9.0 97 176-273 126-292 (374)
91 4iej_A DNA methyltransferase 1 96.5 0.0018 6.3E-08 54.4 3.8 47 173-220 30-81 (93)
92 1ofc_X ISWI protein; nuclear p 96.4 0.0036 1.2E-07 62.8 5.9 106 108-219 111-273 (304)
93 1irz_A ARR10-B; helix-turn-hel 93.3 0.18 6.2E-06 39.5 6.1 48 171-218 5-56 (64)
94 1irz_A ARR10-B; helix-turn-hel 92.7 0.32 1.1E-05 38.1 6.8 48 224-271 6-58 (64)
95 2y9y_A Imitation switch protei 89.4 0.77 2.6E-05 47.2 7.7 46 172-217 227-287 (374)
96 4b4c_A Chromodomain-helicase-D 88.0 0.61 2.1E-05 43.3 5.5 50 223-272 5-59 (211)
97 3ntt_A Capsid protein; gene th 82.9 0.33 1.1E-05 53.5 1.0 14 108-121 280-293 (724)
98 2xb0_X Chromo domain-containin 82.7 0.84 2.9E-05 45.0 3.8 28 174-201 169-196 (270)
99 3ng9_A Capsid protein; beta ba 82.5 0.37 1.3E-05 53.1 1.3 14 108-121 290-303 (736)
100 4dpv_Z Protein (parvovirus coa 80.3 0.39 1.3E-05 51.0 0.4 12 110-121 121-132 (584)
101 1k3v_A Capsid protein VP2; ico 78.9 0.53 1.8E-05 50.9 0.9 16 59-74 120-135 (579)
102 3n44_F E1 envelope glycoprotei 74.4 0.63 2.2E-05 47.9 0.0 27 7-33 4-31 (473)
103 1k3v_A Capsid protein VP2; ico 69.9 1.2 4.1E-05 48.2 0.8 13 109-121 120-132 (579)
104 2xb0_X Chromo domain-containin 65.7 12 0.0004 36.8 6.9 48 225-272 3-55 (270)
105 2o8x_A Probable RNA polymerase 54.2 16 0.00055 26.7 4.4 44 228-273 16-59 (70)
106 1ku3_A Sigma factor SIGA; heli 49.3 21 0.00072 26.9 4.5 44 228-273 11-58 (73)
107 3nwm_A Peptide/beta-2microglob 47.7 4.3 0.00015 42.4 0.3 14 7-20 127-140 (443)
108 2rq5_A Protein jumonji; develo 46.3 22 0.00076 30.7 4.6 57 182-241 45-113 (121)
109 3u85_B Histone-lysine N-methyl 45.3 8.8 0.0003 23.4 1.3 11 7-17 8-18 (21)
110 2p7v_B Sigma-70, RNA polymeras 44.6 21 0.00072 26.5 3.8 42 232-274 9-54 (68)
111 3nwm_A Peptide/beta-2microglob 43.1 5.3 0.00018 41.7 0.2 22 1-22 125-146 (443)
112 1g3p_A G3P, minor coat protein 42.9 4.5 0.00015 37.3 -0.4 12 50-61 131-142 (217)
113 2li6_A SWI/SNF chromatin-remod 39.7 25 0.00084 29.8 3.8 38 235-272 53-98 (116)
114 3hug_A RNA polymerase sigma fa 39.3 37 0.0013 26.7 4.6 41 232-273 41-81 (92)
115 2li6_A SWI/SNF chromatin-remod 38.9 21 0.00072 30.3 3.2 39 183-221 53-98 (116)
116 3cz6_A DNA-binding protein RAP 38.9 34 0.0012 31.3 4.8 31 162-192 102-141 (168)
117 3cz6_A DNA-binding protein RAP 38.4 91 0.0031 28.5 7.5 57 181-237 64-126 (168)
118 1s58_A B19 parvovirus capsid; 35.1 11 0.00036 40.7 0.9 14 400-413 510-523 (554)
119 2lm1_A Lysine-specific demethy 34.6 56 0.0019 26.9 5.2 39 234-272 47-97 (107)
120 2jrz_A Histone demethylase jar 33.7 49 0.0017 28.0 4.8 39 234-272 43-93 (117)
121 3i4p_A Transcriptional regulat 33.3 34 0.0011 30.0 3.8 44 231-275 3-47 (162)
122 1kkx_A Transcription regulator 32.5 34 0.0012 29.5 3.6 39 235-273 52-98 (123)
123 3i4p_A Transcriptional regulat 31.9 29 0.001 30.4 3.2 43 179-222 3-45 (162)
124 1s58_A B19 parvovirus capsid; 31.1 14 0.00047 39.9 1.0 22 59-80 98-119 (554)
125 1x3u_A Transcriptional regulat 31.0 72 0.0025 23.8 4.9 43 228-273 17-59 (79)
126 2eqy_A RBP2 like, jumonji, at 30.2 65 0.0022 27.5 5.0 39 234-272 45-95 (122)
127 2k27_A Paired box protein PAX- 29.6 2.6E+02 0.0088 23.7 9.9 66 174-243 24-99 (159)
128 3n44_F E1 envelope glycoprotei 29.2 12 0.00039 38.8 0.0 13 16-28 9-21 (473)
129 2jrz_A Histone demethylase jar 29.0 42 0.0014 28.4 3.5 40 182-221 43-93 (117)
130 1or7_A Sigma-24, RNA polymeras 28.9 74 0.0025 27.5 5.3 32 241-273 153-184 (194)
131 1tty_A Sigma-A, RNA polymerase 28.8 66 0.0023 25.1 4.5 41 232-273 22-66 (87)
132 2yc1_B Single chain antibody f 28.7 13 0.00045 32.3 0.3 9 9-17 3-11 (146)
133 2cxy_A BAF250B subunit, HBAF25 28.4 68 0.0023 27.4 4.8 39 234-272 54-104 (125)
134 3c57_A Two component transcrip 27.6 98 0.0034 24.6 5.4 45 227-274 27-71 (95)
135 2p1m_A SKP1-like protein 1A; F 27.4 49 0.0017 29.3 3.8 55 177-238 94-153 (160)
136 3ulq_B Transcriptional regulat 27.0 1.1E+02 0.0038 24.3 5.6 48 224-274 26-73 (90)
137 3v7d_A Suppressor of kinetocho 26.5 52 0.0018 29.6 3.9 41 196-248 126-166 (169)
138 2jxj_A Histone demethylase jar 26.4 42 0.0014 27.2 2.9 39 183-221 40-89 (96)
139 1kkx_A Transcription regulator 26.1 30 0.001 29.8 2.1 39 183-221 52-97 (123)
140 1k78_A Paired box protein PAX5 25.6 2.9E+02 0.0099 23.0 10.4 66 174-243 31-106 (149)
141 1ig6_A MRF-2, modulator recogn 25.5 54 0.0018 27.1 3.5 41 182-222 36-88 (107)
142 1je8_A Nitrate/nitrite respons 25.2 89 0.0031 24.1 4.6 44 227-273 21-64 (82)
143 1fse_A GERE; helix-turn-helix 24.6 1.2E+02 0.0042 21.9 5.2 45 226-273 10-54 (74)
144 2lm1_A Lysine-specific demethy 24.4 51 0.0018 27.2 3.2 40 182-221 47-97 (107)
145 2jpc_A SSRB; DNA binding prote 24.4 1.1E+02 0.0036 21.7 4.6 39 233-273 3-41 (61)
146 3tix_A Ubiquitin-like protein 24.1 16 0.00056 34.5 0.0 18 13-30 12-29 (207)
147 1u78_A TC3 transposase, transp 23.8 2.9E+02 0.0099 22.3 11.8 89 174-267 5-101 (141)
148 2cxy_A BAF250B subunit, HBAF25 23.7 56 0.0019 27.9 3.4 40 182-221 54-104 (125)
149 2dbb_A Putative HTH-type trans 23.6 1.1E+02 0.0039 25.8 5.4 45 231-276 9-54 (151)
150 3e7l_A Transcriptional regulat 23.4 1.1E+02 0.0037 22.5 4.6 35 231-266 19-53 (63)
151 2eqy_A RBP2 like, jumonji, at 23.4 57 0.0019 27.8 3.4 40 182-221 45-95 (122)
152 1c20_A DEAD ringer protein; DN 23.2 99 0.0034 26.4 4.9 39 234-272 55-106 (128)
153 3mzy_A RNA polymerase sigma-H 23.1 91 0.0031 25.8 4.6 33 240-273 120-152 (164)
154 2q1z_A RPOE, ECF SIGE; ECF sig 22.9 51 0.0018 28.3 3.1 42 231-273 138-179 (184)
155 1xsv_A Hypothetical UPF0122 pr 22.8 1.1E+02 0.0039 25.2 5.1 40 232-272 29-68 (113)
156 1g3p_A G3P, minor coat protein 22.8 18 0.00061 33.4 0.0 13 110-122 168-180 (217)
157 2jxj_A Histone demethylase jar 22.7 47 0.0016 26.9 2.5 37 235-271 40-88 (96)
158 2rq5_A Protein jumonji; develo 22.7 89 0.003 26.8 4.4 38 235-272 46-96 (121)
159 2e1c_A Putative HTH-type trans 22.5 93 0.0032 27.6 4.8 45 230-275 26-71 (171)
160 2e1c_A Putative HTH-type trans 22.1 81 0.0028 28.0 4.3 43 178-221 26-68 (171)
161 1rp3_A RNA polymerase sigma fa 22.1 1.1E+02 0.0038 27.1 5.2 42 231-273 190-231 (239)
162 2kk0_A AT-rich interactive dom 21.8 1E+02 0.0034 27.1 4.7 39 234-272 67-118 (145)
163 2bn5_B U1 small nuclear ribonu 21.6 51 0.0018 20.7 1.9 18 36-59 5-22 (26)
164 1ntc_A Protein (nitrogen regul 21.1 1.3E+02 0.0043 23.9 4.8 35 231-266 51-85 (91)
165 1p4w_A RCSB; solution structur 20.9 2.1E+02 0.0071 23.2 6.2 47 225-274 32-78 (99)
166 2ast_A S-phase kinase-associat 20.4 69 0.0024 28.1 3.4 56 176-238 94-154 (159)
167 2k27_A Paired box protein PAX- 20.3 2.8E+02 0.0097 23.4 7.3 77 109-203 25-111 (159)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=4e-41 Score=307.99 Aligned_cols=153 Identities=50% Similarity=0.917 Sum_probs=111.8
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccccccccccccCCCCCCCCCCCHHHHHHH
Q 046581 106 TSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKL 184 (470)
Q Consensus 106 k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~L 184 (470)
++++||+|||++|+++|..+|.. +|..||..+ +|+..+|+ .||.++|+|.+++|+||+|||++|
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~------~W~~Ia~~l~~Rt~~qcr---------~Rw~~~l~p~~~~~~Wt~eEd~~L 69 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTD------DWKVIANYLPNRTDVQCQ---------HRWQKVLNPELIKGPWTKEEDQRV 69 (159)
T ss_dssp --------------------------------------------CHH---------HHHHTTTCTTCCCSCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC------CHHHHHHHcCCCCHHHHH---------HHHHHccCCCcCCCCCChHHHHHH
Confidence 46799999999999999999854 399999865 67777776 599999999999999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHH
Q 046581 185 IKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKN 264 (470)
Q Consensus 185 l~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~Kn 264 (470)
+++|.+||.++|..||..|||||++||++||.++|+|.+++++||+|||.+|++++.+||++|+.||++|||||+++||+
T Consensus 70 ~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~kn 149 (159)
T 1h89_C 70 IKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKN 149 (159)
T ss_dssp HHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHH
Confidence 99999999778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHhh
Q 046581 265 HWNATKRRQ 273 (470)
Q Consensus 265 Rw~~llrr~ 273 (470)
||+.++|++
T Consensus 150 r~~~~~r~~ 158 (159)
T 1h89_C 150 HWNSTMRRK 158 (159)
T ss_dssp HHHTTTCC-
T ss_pred HHHHHHhcc
Confidence 999998764
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.6e-35 Score=262.08 Aligned_cols=126 Identities=52% Similarity=1.022 Sum_probs=103.2
Q ss_pred ccc-ccCCCcccccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhh
Q 046581 139 DII-YKEGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHN 217 (470)
Q Consensus 139 IA~-~~grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~ 217 (470)
||. ++||+..+|+ .||.++|+|.+++|+||+|||++|+++|.+||.++|..||..|||||++||++||.+
T Consensus 1 Ia~~~~~Rt~~qC~---------~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQ---------HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp ------------------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CccccCCCCHHHHH---------HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 344 5677777777 599999999999999999999999999999998789999999999999999999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 218 HLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 218 ~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
+|+|.+++++||+|||++|+++|.+||++|+.||++|||||+++||+||+.++|++
T Consensus 72 ~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 72 HLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp TTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred hcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999998764
No 3
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=5.4e-32 Score=231.41 Aligned_cols=104 Identities=64% Similarity=1.264 Sum_probs=99.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHH
Q 046581 170 ALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAE 249 (470)
Q Consensus 170 ~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~ 249 (470)
.+++|+||+|||++|+++|.+||..+|..||+.|||||++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~ 80 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE 80 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence 37899999999999999999999878999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 250 IAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 250 IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
||++|||||+++|++||+.+++++
T Consensus 81 Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 81 IAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHcCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999998764
No 4
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=6.8e-32 Score=232.28 Aligned_cols=104 Identities=39% Similarity=0.806 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhh
Q 046581 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAK 252 (470)
Q Consensus 173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk 252 (470)
||+||+|||++|+++|.+||..+|..||..|||||++||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 68999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHhHHhhhhc
Q 046581 253 HIPGRTENSIKNHWNATKRRQNSR 276 (470)
Q Consensus 253 ~LpgRT~~q~KnRw~~llrr~~~k 276 (470)
+|||||+++||+||+.++++..+.
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HCCCCCHHHHHHHHHHHHhhHHHh
Confidence 999999999999999999876543
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=8.8e-31 Score=231.60 Aligned_cols=105 Identities=39% Similarity=0.724 Sum_probs=100.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChH
Q 046581 168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRW 247 (470)
Q Consensus 168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kW 247 (470)
.+..++|+||+|||++|+++|.+||. +|..||+.||||+++||++||.++|+|.+++++||+|||++|+++|.+||++|
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W 84 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW 84 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence 45678999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 248 AEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 248 s~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
+.||++|||||+++||+||+.++++.
T Consensus 85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 85 AIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
No 6
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=3.5e-31 Score=235.50 Aligned_cols=108 Identities=41% Similarity=0.839 Sum_probs=102.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHh
Q 046581 172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIA 251 (470)
Q Consensus 172 kKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IA 251 (470)
.||+||+|||++|+++|..||..+|..||..|||||+.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 37999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhHHhhhhcccc
Q 046581 252 KHIPGRTENSIKNHWNATKRRQNSRRKN 279 (470)
Q Consensus 252 k~LpgRT~~q~KnRw~~llrr~~~k~k~ 279 (470)
++|||||+++|++||+.+++++......
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~ 108 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRISTNSN 108 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999887665443
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.95 E-value=1.9e-28 Score=224.03 Aligned_cols=115 Identities=33% Similarity=0.695 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCC-hHHH
Q 046581 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGN-RWAE 249 (470)
Q Consensus 171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~-kWs~ 249 (470)
+++++||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~ 83 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV 83 (159)
T ss_dssp ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence 678999999999999999999988999999999999999999999999999999999999999999999999996 6999
Q ss_pred HhhhCCCCCHHHHHHHHHHhHHhhhhccccchhhhh
Q 046581 250 IAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEKQ 285 (470)
Q Consensus 250 IAk~LpgRT~~q~KnRw~~llrr~~~k~k~~~~e~~ 285 (470)
||+.|||||+.||++||..++....++.+++.+|+.
T Consensus 84 Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~ 119 (159)
T 1h89_C 84 IAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDR 119 (159)
T ss_dssp HHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHH
Confidence 999999999999999999999887777777766653
No 8
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.92 E-value=3.8e-26 Score=203.03 Aligned_cols=128 Identities=22% Similarity=0.391 Sum_probs=102.3
Q ss_pred CCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccccccccccccCCCCCCCCCCCHHHHHHHH
Q 046581 107 STTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLI 185 (470)
Q Consensus 107 ~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~Ll 185 (470)
+|+||+|||+.|+++|..||.. +|..||..+ +|+..+|| .||.++|+|.+++|+||+|||++|+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~------~W~~Ia~~~~~Rt~~qcr---------~Rw~~~l~p~~~~~~Wt~eEd~~L~ 66 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQ------NWPRITSFLPNRSPKQCR---------ERWFNHLDPAVVKHAWTPEEDETIF 66 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSC------CGGGGTTSCTTSCHHHHH---------HHHHHHTSTTCCCSCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcC------CHHHHHHHHCCCCHHHHH---------HHHhhccCccccCCCCCHHHHHHHH
Confidence 5799999999999999999854 399999855 77888887 6999999999999999999999999
Q ss_pred HHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhC
Q 046581 186 KLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHI 254 (470)
Q Consensus 186 ~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~L 254 (470)
++|.+|| .+|+.||+.|||||+.||++||+++|++.+..++|+.+- |+ .......+|+.|++.|
T Consensus 67 ~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~---~~-p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 67 RNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI---LL-PDRSKKRKAADVPKKL 130 (131)
T ss_dssp HHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC---CC-CCCC------------
T ss_pred HHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccc---cC-chhhhhhhhhhcchhc
Confidence 9999999 699999999999999999999999999999999888752 11 1122245688888765
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.91 E-value=2.9e-25 Score=189.65 Aligned_cols=101 Identities=22% Similarity=0.392 Sum_probs=91.9
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccccccccccccCCCCCCCCCCCHHHHHHH
Q 046581 106 TSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKL 184 (470)
Q Consensus 106 k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~L 184 (470)
++++||+|||+.|+++|..||.. +|..||.++ +|+..+|+ .||.++|+|.+++|+||+|||.+|
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~------~W~~Ia~~l~~Rt~~qcr---------~Rw~~~l~p~~~~~~Wt~eEd~~L 67 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPK------RWSVIAKHLKGRIGKQCR---------ERWHNHLNPEVKKTSWTEEEDRII 67 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTT------CHHHHHTTSTTCCHHHHH---------HHHHHTTCCCCCCCCCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC------cHHHHhhhhcCCCHHHHH---------HHHHhccCCcccccCCCHHHHHHH
Confidence 56899999999999999999964 499999865 77888887 599999999999999999999999
Q ss_pred HHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581 185 IKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222 (470)
Q Consensus 185 l~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ 222 (470)
+++|.+|| .+|+.||+.|||||+.||++||+.+|++.
T Consensus 68 ~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 68 YQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 99999999 69999999999999999999999988754
No 10
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.91 E-value=4.2e-25 Score=189.92 Aligned_cols=101 Identities=23% Similarity=0.334 Sum_probs=91.8
Q ss_pred CCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccccccccccccCCCCCCCCCCCHHHHHHHH
Q 046581 107 STTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEEDRKLI 185 (470)
Q Consensus 107 ~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED~~Ll 185 (470)
+++||+|||+.|+++|..||.. +|..||.++ +|+..+|| .||.++|+|.+++|+||+|||.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~------~W~~Ia~~~~~Rt~~qcr---------~Rw~~~L~p~i~~~~WT~eEd~~L~ 65 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAK------DWIRISQLMITRNPRQCR---------ERWNNYINPALRTDPWSPEEDMLLD 65 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSS------CHHHHHHHTTTSCHHHHH---------HHHHHHSSSCCTTCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCC------CHHHHhhhcCCCCHHHHH---------HHHHHHHcccccccccCHHHHHHHH
Confidence 4689999999999999999954 499999855 67778887 5999999999999999999999999
Q ss_pred HHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcccccc
Q 046581 186 KLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDI 223 (470)
Q Consensus 186 ~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~i 223 (470)
++|.+|| .+|..||+.|||||+.||++||+.++++..
T Consensus 66 ~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 66 QKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp HHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHHHhhHH
Confidence 9999999 599999999999999999999998877543
No 11
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.91 E-value=8.6e-25 Score=193.24 Aligned_cols=119 Identities=19% Similarity=0.348 Sum_probs=96.0
Q ss_pred CCCCccccccCCCccCCCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhcccc-cCCCcccccCcccccccccccccc
Q 046581 88 TSGASTAAAYGGQHEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIY-KEGSKSACNNNKGMIGHKRSNKKG 166 (470)
Q Consensus 88 ~s~~~~~~~~g~~~~~~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~-~grs~~~cR~~~q~~~~~rRw~~~ 166 (470)
.++.++-..+.....+..++++||+|||+.|+++|..||.. +|..||.+ +||+..+|+ .||.++
T Consensus 8 Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~------~W~~Ia~~l~~Rt~~qcr---------~Rw~~~ 72 (128)
T 1h8a_C 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPK------RWSDIAKHLKGRIGKQCR---------ERWHNH 72 (128)
T ss_dssp --------------CTTCCCSCCCHHHHHHHHHHHHHTCSC------CHHHHHHHSSSCCHHHHH---------HHHHHT
T ss_pred CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCC------CHHHHHHHhcCCcHHHHH---------HHHHHh
Confidence 34444555454456677788999999999999999999954 39999995 478888887 599999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581 167 ASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222 (470)
Q Consensus 167 l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ 222 (470)
|+|.+++|+||+|||++|+++|.+|| .+|+.||+.|||||+.||++||+.+|+..
T Consensus 73 l~p~~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 73 LNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp TCSSSCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred cccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999 69999999999999999999999988754
No 12
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.90 E-value=8.8e-25 Score=193.14 Aligned_cols=101 Identities=22% Similarity=0.397 Sum_probs=93.0
Q ss_pred CCCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccccccccccccCCCCCCCCCCCHHHH
Q 046581 103 ALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMIGHKRSNKKGASVALIKGQWTDEED 181 (470)
Q Consensus 103 ~~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~~~~rRw~~~l~p~lkKG~WT~EED 181 (470)
+..++++||+|||++|+++|..||.+ |..||..+ +|+..+|| .||.++|+|.+++|+||+|||
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~~-------W~~Ia~~~~~Rt~~qcr---------~Rw~~~l~p~~~~~~WT~eEd 70 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGSD-------WKMIAATFPNRNARQCR---------DRWKNYLAPSISHTPWTAEED 70 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTTC-------HHHHHHTCTTCCHHHHH---------HHHHHHTSTTSCCSCCCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC-------HHHHHHHcCCCCHHHHH---------HHHhhhcccccccccCCHHHH
Confidence 44677899999999999999999963 99999855 78888887 699999999999999999999
Q ss_pred HHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccc
Q 046581 182 RKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR 220 (470)
Q Consensus 182 ~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~ 220 (470)
++|+++|.+|| .+|+.||+.|||||+.||++||..+++
T Consensus 71 ~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 71 ALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp HHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999 699999999999999999999998775
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.9e-21 Score=152.46 Aligned_cols=67 Identities=33% Similarity=0.697 Sum_probs=64.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHH
Q 046581 167 ASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEE 233 (470)
Q Consensus 167 l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED 233 (470)
..|.+++|+||+|||++|+++|.+||.++|..||..|+|||++||++||+++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 3578899999999999999999999988999999999999999999999999999999999999997
No 14
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.77 E-value=5.1e-19 Score=170.94 Aligned_cols=105 Identities=22% Similarity=0.331 Sum_probs=92.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc-----hHHHHHHHhcCCChhhhhhhhhhccccccc-------------------
Q 046581 169 VALIKGQWTDEEDRKLIKLVKQYGVR-----KWAQISERMAGRAGKQCRERWHNHLRPDIK------------------- 224 (470)
Q Consensus 169 p~lkKG~WT~EED~~Ll~lV~~yG~~-----~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ik------------------- 224 (470)
+.+++++||+|||++|+++|.++|.. .|..||+.|||||+.|||+||+.+|++.++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 46789999999999999999999853 299999999999999999999999999986
Q ss_pred ----------cCCCCHHHHHHHHHHHHH-h--------------------------------CC----------------
Q 046581 225 ----------KDSWSEEEERILVEAHAR-I--------------------------------GN---------------- 245 (470)
Q Consensus 225 ----------k~~WT~EED~~Ll~lv~~-~--------------------------------G~---------------- 245 (470)
+..||.+||..|+..+.+ + +.
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 163 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ 163 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence 789999999999999877 1 11
Q ss_pred ---------hHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 246 ---------RWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 246 ---------kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
.|.+||+.+|+||.+++|+||+.+++..
T Consensus 164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999998765
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=3e-17 Score=127.11 Aligned_cols=57 Identities=33% Similarity=0.615 Sum_probs=54.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccc
Q 046581 168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIK 224 (470)
Q Consensus 168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ik 224 (470)
+|.+++++||+|||++|+++|.+||.++|..||+.|+|||+.||++||+++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 578999999999999999999999977999999999999999999999999999875
No 16
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.68 E-value=4.8e-17 Score=143.31 Aligned_cols=84 Identities=17% Similarity=0.340 Sum_probs=78.9
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHh----cCCChhhhhhhhhhccc-----cccccC-CCCHHHHHH
Q 046581 166 GASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERM----AGRAGKQCRERWHNHLR-----PDIKKD-SWSEEEERI 235 (470)
Q Consensus 166 ~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~l----pgRT~~Qcr~Rw~~~L~-----p~ikk~-~WT~EED~~ 235 (470)
.+.+..++++||+|||+.|+++|.+||.++|+.|++.+ ++||+.+|++||+++|+ |.++++ +|+++|+.+
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 35678899999999999999999999988999999985 89999999999999998 999998 999999999
Q ss_pred HHHHHHHhCChHHH
Q 046581 236 LVEAHARIGNRWAE 249 (470)
Q Consensus 236 Ll~lv~~~G~kWs~ 249 (470)
|++++..+|++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.65 E-value=7.8e-17 Score=121.34 Aligned_cols=52 Identities=63% Similarity=1.317 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222 (470)
Q Consensus 171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ 222 (470)
+++|+||+|||++|+++|.+||..+|..||+.|+|||++||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999778999999999999999999999999984
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=1e-16 Score=120.54 Aligned_cols=52 Identities=44% Similarity=0.834 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222 (470)
Q Consensus 171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ 222 (470)
+++++||+|||++|+++|.+||..+|..||+.|||||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4789999999999999999999779999999999999999999999999984
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=1.7e-16 Score=126.30 Aligned_cols=63 Identities=22% Similarity=0.407 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc--CCChhhhhhhhhhccccccccCCCC
Q 046581 167 ASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMA--GRAGKQCRERWHNHLRPDIKKDSWS 229 (470)
Q Consensus 167 l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp--gRT~~Qcr~Rw~~~L~p~ikk~~WT 229 (470)
..+..++++||+|||++|+++|.+||.++|..||..|+ |||+.||++||+++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 45677899999999999999999999889999999999 9999999999999999999987764
No 20
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.64 E-value=1e-16 Score=129.78 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=48.4
Q ss_pred hhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581 211 CRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKR 271 (470)
Q Consensus 211 cr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llr 271 (470)
+.-||.++|+|.+++++||+|||++|+++|.++|++|+.||+.| |||+++||+||+.+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999 9999999999998754
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=125.97 Aligned_cols=60 Identities=30% Similarity=0.566 Sum_probs=56.3
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCC
Q 046581 166 GASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDS 227 (470)
Q Consensus 166 ~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~ 227 (470)
+|+|.+++++||+|||++|+++|+.||. +|.+||+ ++|||++||++||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 6899999999999999999999999995 9999999 8899999999999999999887653
No 22
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.63 E-value=5.4e-16 Score=136.78 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=73.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHh----cCCChhhhhhhhhhcc-----ccccccCCCCHHH-HHHHH
Q 046581 168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERM----AGRAGKQCRERWHNHL-----RPDIKKDSWSEEE-ERILV 237 (470)
Q Consensus 168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~l----pgRT~~Qcr~Rw~~~L-----~p~ikk~~WT~EE-D~~Ll 237 (470)
....++++||+|||+.|+++|++||.++|+.|++.+ ++||+.+|++||++++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 455678999999999999999999988999999975 7999999999999999 7999999999999 89999
Q ss_pred HHHHHhCCh
Q 046581 238 EAHARIGNR 246 (470)
Q Consensus 238 ~lv~~~G~k 246 (470)
+++..+|++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999975
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.61 E-value=5.3e-16 Score=125.50 Aligned_cols=61 Identities=26% Similarity=0.370 Sum_probs=48.2
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccc
Q 046581 161 RSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIK 224 (470)
Q Consensus 161 rRw~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ik 224 (470)
.||.++|+|.+++|+||+|||++|+++|.+|| .+|+.||+.| |||+.||++||+. |....+
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence 69999999999999999999999999999999 5799999999 9999999999985 444433
No 24
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.1e-15 Score=118.61 Aligned_cols=55 Identities=18% Similarity=0.458 Sum_probs=52.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581 168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222 (470)
Q Consensus 168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ 222 (470)
.+.+.+++||+|||++|+++|.+||.++|.+||+.||+||++||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 5678999999999999999999999889999999999999999999999999865
No 25
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.58 E-value=1e-15 Score=120.67 Aligned_cols=54 Identities=30% Similarity=0.536 Sum_probs=49.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc--CCChhhhhhhhhhccccccc
Q 046581 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMA--GRAGKQCRERWHNHLRPDIK 224 (470)
Q Consensus 171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp--gRT~~Qcr~Rw~~~L~p~ik 224 (470)
.+|++||+|||++|+++|.+||.++|+.||+.+| |||+.||++||+++++|.++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 4789999999999999999999889999999976 99999999999999998764
No 26
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.4e-15 Score=117.08 Aligned_cols=58 Identities=29% Similarity=0.428 Sum_probs=54.9
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhhhhc
Q 046581 218 HLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSR 276 (470)
Q Consensus 218 ~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k 276 (470)
+|+|.+++++||+|||++|+++|.++|.+|..||+ ++|||+.|||+||+.++++..++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence 69999999999999999999999999999999999 88999999999999999886654
No 27
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.55 E-value=5.1e-15 Score=118.80 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=54.5
Q ss_pred cccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhhhhc
Q 046581 219 LRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSR 276 (470)
Q Consensus 219 L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k 276 (470)
++|.+++++||+|||++|+++|.+||.+|..||++|||||+.|||+||+.++++..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999886554
No 28
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.55 E-value=3.5e-15 Score=119.71 Aligned_cols=58 Identities=19% Similarity=0.331 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcccccccc
Q 046581 167 ASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKK 225 (470)
Q Consensus 167 l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk 225 (470)
.+|.+++++||+|||++|+++|.+||. +|..||+.|||||+.||++||+++|++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999995 9999999999999999999999999887665
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.55 E-value=3.8e-15 Score=112.67 Aligned_cols=49 Identities=27% Similarity=0.560 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc--CCChhhhhhhhhhccc
Q 046581 172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMA--GRAGKQCRERWHNHLR 220 (470)
Q Consensus 172 kKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp--gRT~~Qcr~Rw~~~L~ 220 (470)
++++||+|||++|+++|.+||.++|..||..|+ |||+.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 579999999999999999999889999999999 9999999999999876
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5.4e-15 Score=119.27 Aligned_cols=61 Identities=26% Similarity=0.368 Sum_probs=56.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----chHHHHHHHhcCCChhhhhhhhhhccccccccCCC
Q 046581 168 SVALIKGQWTDEEDRKLIKLVKQYGV-----RKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSW 228 (470)
Q Consensus 168 ~p~lkKG~WT~EED~~Ll~lV~~yG~-----~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~W 228 (470)
.|.+.+++||+|||++|+++|.+||. .+|.+||+.|+|||+.||++||+++|.+.++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 57889999999999999999999996 79999999999999999999999999988776543
No 31
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=7.6e-15 Score=113.29 Aligned_cols=52 Identities=21% Similarity=0.559 Sum_probs=48.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc-CCChhhhhhhhhhcc
Q 046581 168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMA-GRAGKQCRERWHNHL 219 (470)
Q Consensus 168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp-gRT~~Qcr~Rw~~~L 219 (470)
...+.+++||+|||++|+++|.+||.++|..||+.|+ +||++||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4457789999999999999999999889999999999 999999999999875
No 32
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.3e-14 Score=115.64 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=59.3
Q ss_pred ccccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHHhhhhccccchhhh
Q 046581 220 RPDIKKDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKQNEK 284 (470)
Q Consensus 220 ~p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k~k~~~~e~ 284 (470)
.|.+++++||+|||++|+++|.+|| ++|..||.+|++||+.||++||+.+++...++.+++.+|+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4678999999999999999999999 7999999999999999999999999998888877776553
No 33
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=2.3e-14 Score=110.77 Aligned_cols=54 Identities=24% Similarity=0.471 Sum_probs=50.4
Q ss_pred ccccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 220 RPDIKKDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 220 ~p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
+|.+++++||+|||++|+++|.+|| ++|..||++||+||+.||++||+.+++..
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 4778999999999999999999999 69999999999999999999999988653
No 34
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.47 E-value=5.3e-14 Score=105.66 Aligned_cols=50 Identities=26% Similarity=0.563 Sum_probs=45.7
Q ss_pred cccCCCCHHHHHHHHHHHHHhCC-hHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581 223 IKKDSWSEEEERILVEAHARIGN-RWAEIAKHIPGRTENSIKNHWNATKRR 272 (470)
Q Consensus 223 ikk~~WT~EED~~Ll~lv~~~G~-kWs~IAk~LpgRT~~q~KnRw~~llrr 272 (470)
+++++||+|||++|+++|.+||. +|..||+.|||||+.||++||+.+++.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 999999999999999999999998753
No 35
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.44 E-value=1.2e-13 Score=104.50 Aligned_cols=49 Identities=29% Similarity=0.599 Sum_probs=46.2
Q ss_pred ccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCC--CCCHHHHHHHHHHhHHh
Q 046581 224 KKDSWSEEEERILVEAHARIG-NRWAEIAKHIP--GRTENSIKNHWNATKRR 272 (470)
Q Consensus 224 kk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~Lp--gRT~~q~KnRw~~llrr 272 (470)
++++||+|||++|+++|.+|| ++|+.||..|| |||+.||++||..++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999874
No 36
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.43 E-value=1.3e-13 Score=103.68 Aligned_cols=49 Identities=31% Similarity=0.720 Sum_probs=45.9
Q ss_pred cccCCCCHHHHHHHHHHHHHhCC-hHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581 223 IKKDSWSEEEERILVEAHARIGN-RWAEIAKHIPGRTENSIKNHWNATKR 271 (470)
Q Consensus 223 ikk~~WT~EED~~Ll~lv~~~G~-kWs~IAk~LpgRT~~q~KnRw~~llr 271 (470)
+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||..+++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999997 69999999999999999999998775
No 37
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=1.8e-13 Score=106.19 Aligned_cols=53 Identities=23% Similarity=0.422 Sum_probs=49.0
Q ss_pred ccccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581 220 RPDIKKDSWSEEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKRR 272 (470)
Q Consensus 220 ~p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llrr 272 (470)
.+.+.+++||+|||++|+++|.+|| ++|.+||++||+||+.||++||..++..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 3578899999999999999999999 7999999999999999999999987653
No 38
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.41 E-value=2.9e-13 Score=107.57 Aligned_cols=58 Identities=24% Similarity=0.457 Sum_probs=52.6
Q ss_pred cccccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCC--CCCHHHHHHHHHHhHHhhhhc
Q 046581 219 LRPDIKKDSWSEEEERILVEAHARIG-NRWAEIAKHIP--GRTENSIKNHWNATKRRQNSR 276 (470)
Q Consensus 219 L~p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~Lp--gRT~~q~KnRw~~llrr~~~k 276 (470)
..+..++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||+.+++....+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 45667889999999999999999999 69999999999 999999999999999876543
No 39
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.38 E-value=8.5e-13 Score=109.20 Aligned_cols=68 Identities=18% Similarity=0.410 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHHHHH----hcCCChhhhhhhhhhcc-----ccccccC-CCCHHHHHHHHHHHH
Q 046581 174 GQWTDEEDRKLIKLVKQYGVRKWAQISER----MAGRAGKQCRERWHNHL-----RPDIKKD-SWSEEEERILVEAHA 241 (470)
Q Consensus 174 G~WT~EED~~Ll~lV~~yG~~~Ws~IA~~----lpgRT~~Qcr~Rw~~~L-----~p~ikk~-~WT~EED~~Ll~lv~ 241 (470)
++||+|||+.|+++|++||.++|+.|++. |++||+.+|++||+++| +|.++++ +..++....++.++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 47999999999999999998899999996 89999999999999988 5776664 677777777887775
No 40
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.2e-13 Score=108.14 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=50.6
Q ss_pred ccccccCCCCHHHHHHHHHHHHHhC------ChHHHHhhhCCCCCHHHHHHHHHHhHHhhh
Q 046581 220 RPDIKKDSWSEEEERILVEAHARIG------NRWAEIAKHIPGRTENSIKNHWNATKRRQN 274 (470)
Q Consensus 220 ~p~ikk~~WT~EED~~Ll~lv~~~G------~kWs~IAk~LpgRT~~q~KnRw~~llrr~~ 274 (470)
+|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+.++++..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999 789999999999999999999988776644
No 41
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.36 E-value=8.4e-13 Score=104.03 Aligned_cols=51 Identities=35% Similarity=0.657 Sum_probs=46.2
Q ss_pred cccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCC--CCCHHHHHHHHHHhHHhh
Q 046581 223 IKKDSWSEEEERILVEAHARIG-NRWAEIAKHIP--GRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 223 ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~Lp--gRT~~q~KnRw~~llrr~ 273 (470)
.++++||+|||++|+++|.+|| ++|+.||+.+| +||+.||++||+.++|..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4778999999999999999999 58999999876 999999999999998754
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.35 E-value=6.5e-13 Score=114.36 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=65.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHh----cCCChhhhhhhhhhcc-----ccccccCCCCHHHHHH-HH
Q 046581 168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERM----AGRAGKQCRERWHNHL-----RPDIKKDSWSEEEERI-LV 237 (470)
Q Consensus 168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~l----pgRT~~Qcr~Rw~~~L-----~p~ikk~~WT~EED~~-Ll 237 (470)
....++++||+|||+.|+++|.+||.++|+.|++.+ ++||+.+|++||++++ +|.++++.-+++|-.. ++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 456789999999999999999999988999999965 8999999999999999 6888898888776554 66
Q ss_pred HHHHHhC
Q 046581 238 EAHARIG 244 (470)
Q Consensus 238 ~lv~~~G 244 (470)
+++..++
T Consensus 88 ~~~~~~~ 94 (105)
T 2aje_A 88 NAHGYWT 94 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665544
No 43
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.34 E-value=1.3e-12 Score=100.75 Aligned_cols=49 Identities=29% Similarity=0.624 Sum_probs=45.4
Q ss_pred cccccCCCCHHHHHHHHHHHHHhC-ChHHHHhhhCC-CCCHHHHHHHHHHh
Q 046581 221 PDIKKDSWSEEEERILVEAHARIG-NRWAEIAKHIP-GRTENSIKNHWNAT 269 (470)
Q Consensus 221 p~ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk~Lp-gRT~~q~KnRw~~l 269 (470)
..+.+++||+|||++|+++|.+|| ++|..||++|+ +||+.||++||..+
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 346688999999999999999999 89999999999 99999999999865
No 44
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.02 E-value=1e-13 Score=115.81 Aligned_cols=56 Identities=27% Similarity=0.429 Sum_probs=52.8
Q ss_pred ccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 218 HLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 218 ~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
.+.|.+++++||+|||++|+++|.+||++|+.||.+|||||++||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 46788999999999999999999999999999999999999999999999988764
No 45
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-13 Score=115.47 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=51.6
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581 166 GASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRP 221 (470)
Q Consensus 166 ~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p 221 (470)
.+.|.+.+|+||+|||++|+++|..||. +|..||..|||||+.||++||+++|+.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 4678999999999999999999999995 899999999999999999999998874
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=106.57 Aligned_cols=50 Identities=22% Similarity=0.487 Sum_probs=47.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc
Q 046581 168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH 218 (470)
Q Consensus 168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~ 218 (470)
.....+++||+|||++|+++|.+|| ++|.+||+.|++||+.||++||.++
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4556789999999999999999999 8999999999999999999999988
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.27 E-value=1.8e-12 Score=104.86 Aligned_cols=53 Identities=17% Similarity=0.413 Sum_probs=48.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---CchHHHHHHHhcCCChhhhhhhhhhccc
Q 046581 168 SVALIKGQWTDEEDRKLIKLVKQYG---VRKWAQISERMAGRAGKQCRERWHNHLR 220 (470)
Q Consensus 168 ~p~lkKG~WT~EED~~Ll~lV~~yG---~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~ 220 (470)
.+...+++||+|||++|++++..|| ..+|.+||+.|||||++||++||..++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3567889999999999999999999 4689999999999999999999998765
No 48
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.27 E-value=4.4e-12 Score=102.53 Aligned_cols=51 Identities=14% Similarity=0.436 Sum_probs=47.3
Q ss_pred cccccCCCCHHHHHHHHHHHHHhC----ChHHHHhhhCCCCCHHHHHHHHHHhHH
Q 046581 221 PDIKKDSWSEEEERILVEAHARIG----NRWAEIAKHIPGRTENSIKNHWNATKR 271 (470)
Q Consensus 221 p~ikk~~WT~EED~~Ll~lv~~~G----~kWs~IAk~LpgRT~~q~KnRw~~llr 271 (470)
+.+.+++||.+||.+|++++..|| .+|.+||++|||||..+|++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 689999999999999999999999875
No 49
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.26 E-value=3.3e-12 Score=123.63 Aligned_cols=106 Identities=16% Similarity=0.144 Sum_probs=86.6
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCCCcccccChhhccc-ccCCCcccccCccccccccccccccCCCCCC-----------
Q 046581 105 RTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDII-YKEGSKSACNNNKGMIGHKRSNKKGASVALI----------- 172 (470)
Q Consensus 105 ~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~-~~grs~~~cR~~~q~~~~~rRw~~~l~p~lk----------- 172 (470)
.++++||+|||+.|+++|.++|... .....|++||. ++||+..+|| .||..+|.+.+.
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r-~ghk~W~~IAk~LpGRT~nsIR---------nRw~~~L~~~ln~vy~~ded~~L 75 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRR-TTHTLYDEISHYVPNHTGNSIR---------HRFRVYLSKRLEYVYEVDKFGKL 75 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGT-TCSHHHHHHTTTSTTSCHHHHH---------HHHHHTTGGGCCCEECBCTTSCB
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCc-cccccHHHHHHHcCCCCHHHHH---------HHHHHHHhhhcccccccCcchhh
Confidence 3457999999999999999998531 11234999998 6788889998 488888888775
Q ss_pred ------------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------
Q 046581 173 ------------------KGQWTDEEDRKLIKLVKQ-Y--------------------------------GV-------- 193 (470)
Q Consensus 173 ------------------KG~WT~EED~~Ll~lV~~-y--------------------------------G~-------- 193 (470)
|.+||.|||-.|+..+.+ + +.
T Consensus 76 i~d~~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (246)
T 1ign_A 76 VRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEP 155 (246)
T ss_dssp CBCTTSCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC--------------------------
T ss_pred hhccCCCceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCc
Confidence 899999999999999987 1 11
Q ss_pred ----------------chHHHHHHHhcCCChhhhhhhhhhccc
Q 046581 194 ----------------RKWAQISERMAGRAGKQCRERWHNHLR 220 (470)
Q Consensus 194 ----------------~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~ 220 (470)
..|..||+.+|+||..+.|+||...|.
T Consensus 156 ~f~~~~~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~ 198 (246)
T 1ign_A 156 NFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLL 198 (246)
T ss_dssp -----CCCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHH
T ss_pred chhhhccccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHh
Confidence 279999999999999999999998775
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.17 E-value=1.6e-11 Score=100.50 Aligned_cols=47 Identities=23% Similarity=0.485 Sum_probs=44.5
Q ss_pred cccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHh
Q 046581 223 IKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNAT 269 (470)
Q Consensus 223 ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~l 269 (470)
..+++||+|||.+|+++|.+||++|..||++|++||+.||++||..+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999865
No 51
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.14 E-value=5.1e-11 Score=93.19 Aligned_cols=50 Identities=18% Similarity=0.381 Sum_probs=46.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhCChHHHHh---hhCCCCCHHHHHHHHHHhHHhh
Q 046581 224 KKDSWSEEEERILVEAHARIGNRWAEIA---KHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 224 kk~~WT~EED~~Ll~lv~~~G~kWs~IA---k~LpgRT~~q~KnRw~~llrr~ 273 (470)
++.+||+|||+.|++.|++||.+|+.|+ +++++||..+||+||+.|.|+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 6789999999999999999999999999 5779999999999999998753
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.11 E-value=2.5e-11 Score=106.86 Aligned_cols=82 Identities=10% Similarity=0.074 Sum_probs=70.8
Q ss_pred ccCCCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhcccc-----cCCCcccccCccccccccccccccCC-----CC
Q 046581 101 HEALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIY-----KEGSKSACNNNKGMIGHKRSNKKGAS-----VA 170 (470)
Q Consensus 101 ~~~~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~-----~grs~~~cR~~~q~~~~~rRw~~~l~-----p~ 170 (470)
....+++++||.|||+.|+++|.+||.+ +|..|+.. .+|+.++|++ ||.+.+. |.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G------~W~~Ia~~~~~~f~~RT~v~lKd---------RWrnllk~~~~~p~ 75 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTG------RWRDVKMRAFDNADHRTYVDLKD---------KWKTLVHTASIAPQ 75 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGG------CHHHHHHHHCSCCSSCCSHHHHH---------HHHHHHHHHHTCST
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCC------CHHHHHHHhccccCCCCHHHHHH---------HHHHHHhhhccCCc
Confidence 3455777999999999999999999964 39999884 6888888884 7777666 99
Q ss_pred CCCC-CCCHHHHHHHHHHHHHhCCchHHH
Q 046581 171 LIKG-QWTDEEDRKLIKLVKQYGVRKWAQ 198 (470)
Q Consensus 171 lkKG-~WT~EED~~Ll~lV~~yG~~~Ws~ 198 (470)
+++| +|++||+.+|++++..+| ++|.+
T Consensus 76 ~krg~~~p~e~~~rv~~~h~~~g-n~~~~ 103 (121)
T 2juh_A 76 QRRGEPVPQDLLDRVLAAHAYWS-QQQGK 103 (121)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHH-HHHCC
T ss_pred ccCCCCCCHHHHHHHHHHHHHHc-cchhc
Confidence 9999 999999999999999999 78876
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.11 E-value=9.9e-11 Score=96.79 Aligned_cols=49 Identities=27% Similarity=0.494 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC-hHHHHhhh----CCCCCHHHHHHHHHHhHHhhh
Q 046581 226 DSWSEEEERILVEAHARIGN-RWAEIAKH----IPGRTENSIKNHWNATKRRQN 274 (470)
Q Consensus 226 ~~WT~EED~~Ll~lv~~~G~-kWs~IAk~----LpgRT~~q~KnRw~~llrr~~ 274 (470)
.+||+|||+.|+++|.+||. +|+.|++. |++||+.+||+||+.++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999997 99999996 899999999999999988643
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.06 E-value=9.7e-11 Score=98.81 Aligned_cols=48 Identities=15% Similarity=0.501 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CchHHHHHHHhcCCChhhhhhhhhhcc
Q 046581 172 IKGQWTDEEDRKLIKLVKQYG---VRKWAQISERMAGRAGKQCRERWHNHL 219 (470)
Q Consensus 172 kKG~WT~EED~~Ll~lV~~yG---~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L 219 (470)
.+++||+|||++|.+++..|+ ..+|.+||+.|||||++||++||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 467899999999999999997 468999999999999999999999865
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.06 E-value=2.1e-10 Score=96.77 Aligned_cols=50 Identities=28% Similarity=0.569 Sum_probs=45.5
Q ss_pred ccCCCCHHHHHHHHHHHHHhC----ChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 224 KKDSWSEEEERILVEAHARIG----NRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 224 kk~~WT~EED~~Ll~lv~~~G----~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
.+++||.|||.+|++++..|| ++|.+||++|||||.++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999996 68999999999999999999999988654
No 56
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.05 E-value=2.2e-10 Score=98.61 Aligned_cols=54 Identities=22% Similarity=0.419 Sum_probs=48.7
Q ss_pred cccccCCCCHHHHHHHHHHHHHhCC-hHHHHhhhC----CCCCHHHHHHHHHHhHHhhh
Q 046581 221 PDIKKDSWSEEEERILVEAHARIGN-RWAEIAKHI----PGRTENSIKNHWNATKRRQN 274 (470)
Q Consensus 221 p~ikk~~WT~EED~~Ll~lv~~~G~-kWs~IAk~L----pgRT~~q~KnRw~~llrr~~ 274 (470)
+..++++||+|||+.|+++|.+||. +|+.|++.+ ++||+.+||+||+.++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 4567899999999999999999996 999999965 89999999999999998643
No 57
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.05 E-value=7.3e-11 Score=104.08 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=66.8
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHcCCCCcccccChhhcccc-----cCCCcccccCccccccccccccccC-----CCCC
Q 046581 102 EALRTSTTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIY-----KEGSKSACNNNKGMIGHKRSNKKGA-----SVAL 171 (470)
Q Consensus 102 ~~~~k~g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~-----~grs~~~cR~~~q~~~~~rRw~~~l-----~p~l 171 (470)
...+++++||.|||+.|+++|.+||.++ |..|+.. .+|+.++|++ ||.+.+ .|.+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~------W~~I~~~~~~~~~~RT~vdlKd---------RWrnllk~~~~~p~~ 90 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGR------WRDVKFRAFENVHHRTYVDLKD---------KWKTLVHTASIAPQQ 90 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSC------HHHHHHHHHSSSCCCCHHHHHH---------HHHHHHHHHHSCTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCC------hHHHHHHhccccCCCCHHHHHH---------HHHHHHhhccCCccc
Confidence 3456779999999999999999999754 9999873 6888899984 888877 8999
Q ss_pred CCCCCCHHH-HHHHHHHHHHhCC
Q 046581 172 IKGQWTDEE-DRKLIKLVKQYGV 193 (470)
Q Consensus 172 kKG~WT~EE-D~~Ll~lV~~yG~ 193 (470)
++|.|+++| +.+|++++..+|.
T Consensus 91 kr~~~~p~e~~~~v~~~h~~~g~ 113 (122)
T 2roh_A 91 RRGAPVPQELLDRVLAAQAYWSV 113 (122)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999 8999999999884
No 58
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.87 E-value=1.1e-09 Score=85.70 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchHHHHHH---HhcCCChhhhhhhhhhccc
Q 046581 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISE---RMAGRAGKQCRERWHNHLR 220 (470)
Q Consensus 171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~---~lpgRT~~Qcr~Rw~~~L~ 220 (470)
..+.+||+|||+.|++.|++||. +|+.|+. ++++||...+++||+++.+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 36789999999999999999995 9999994 6679999999999998765
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2.9e-09 Score=82.79 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=45.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581 224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRR 272 (470)
Q Consensus 224 kk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr 272 (470)
...+||+||++++++++.+||.+|..||.+||+||..+|..+|...+|.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcCC
Confidence 4479999999999999999999999999999999999999999877553
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.80 E-value=7e-09 Score=87.39 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=58.3
Q ss_pred hhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhC-----CCCCHHHHHHHHHHhHHhhhhcc
Q 046581 209 KQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHI-----PGRTENSIKNHWNATKRRQNSRR 277 (470)
Q Consensus 209 ~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~L-----pgRT~~q~KnRw~~llrr~~~k~ 277 (470)
.=+.++|.++|.+ .+||.||+..|++|+++|+.+|..|+..+ ++||..+||+||..+.++....+
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4577899999876 89999999999999999999999999999 58999999999999988766544
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=7.5e-09 Score=80.44 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc
Q 046581 172 IKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH 218 (470)
Q Consensus 172 kKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~ 218 (470)
..++||+||++++++++..|| .+|..||..||+||..||.++|...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 557899999999999999999 6999999999999999999999754
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.73 E-value=1.6e-08 Score=97.24 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHH
Q 046581 181 DRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTEN 260 (470)
Q Consensus 181 D~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~ 260 (470)
|..|..+-.+. .+|+++-..|..+....+. +++..-.......+||+||+.++++++.+||++|..||+.|++||..
T Consensus 92 D~ei~sLkrqI--q~~kQ~~~~L~~~~~~~Ie-~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~ 168 (235)
T 2iw5_B 92 DMELVSVKRQI--QNIKQTNSALKEKLDGGIE-PYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVV 168 (235)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHSTTTTG-GGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHH
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHHHHhhcc-cccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHH
Confidence 44455555443 3677777777555543332 34331111123469999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhh
Q 046581 261 SIKNHWNATKRRQ 273 (470)
Q Consensus 261 q~KnRw~~llrr~ 273 (470)
|||++|...+||.
T Consensus 169 QcKnfY~~~kKRl 181 (235)
T 2iw5_B 169 QVKNFFVNYRRRF 181 (235)
T ss_dssp HHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877653
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.66 E-value=2.4e-08 Score=80.40 Aligned_cols=52 Identities=15% Similarity=0.344 Sum_probs=45.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC---CchHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581 169 VALIKGQWTDEEDRKLIKLVKQYG---VRKWAQISERMAGRAGKQCRERWHNHLRP 221 (470)
Q Consensus 169 p~lkKG~WT~EED~~Ll~lV~~yG---~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p 221 (470)
.....+.||.|||++|.+++..|+ ..+|.+||..| |||..+|+.||..+...
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 345678899999999999999997 46899999998 99999999999876543
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.66 E-value=3.1e-08 Score=79.73 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=45.1
Q ss_pred ccccCCCCHHHHHHHHHHHHHhC----ChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581 222 DIKKDSWSEEEERILVEAHARIG----NRWAEIAKHIPGRTENSIKNHWNATKRR 272 (470)
Q Consensus 222 ~ikk~~WT~EED~~Ll~lv~~~G----~kWs~IAk~LpgRT~~q~KnRw~~llrr 272 (470)
..+.+.||.||+.+|.+++.+|+ .+|..||..+ |||..+|++||+.|++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34567999999999999999997 5899999998 99999999999998754
No 65
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.50 E-value=1.2e-07 Score=76.56 Aligned_cols=53 Identities=23% Similarity=0.421 Sum_probs=46.1
Q ss_pred ccCCCCHHHHHHHHHHHHHhCC----hHHHHhhhCCCCCHHHHHHHHHHhHHhhhhc
Q 046581 224 KKDSWSEEEERILVEAHARIGN----RWAEIAKHIPGRTENSIKNHWNATKRRQNSR 276 (470)
Q Consensus 224 kk~~WT~EED~~Ll~lv~~~G~----kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k 276 (470)
....||.+|+.+|.+++..|+. +|..||..+||||..+|+.||..+++.....
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~ 63 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQ 63 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccc
Confidence 3468999999999999999984 7999999999999999999999996654433
No 66
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.41 E-value=3e-07 Score=88.45 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=45.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccc
Q 046581 171 LIKGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLR 220 (470)
Q Consensus 171 lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~ 220 (470)
...++||+||+.++++++.+|| ++|..||+.|++||..||+++|+++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999 799999999999999999999988754
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.40 E-value=2.1e-07 Score=72.06 Aligned_cols=48 Identities=23% Similarity=0.511 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCchHHHHHH-HhcCCChhhhhhhhhhccc
Q 046581 173 KGQWTDEEDRKLIKLVKQY--------GVRKWAQISE-RMAGRAGKQCRERWHNHLR 220 (470)
Q Consensus 173 KG~WT~EED~~Ll~lV~~y--------G~~~Ws~IA~-~lpgRT~~Qcr~Rw~~~L~ 220 (470)
+-+||+|||+.|++.|.+| |..-|..+++ .+|++|-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 4679999999999999999 6567999999 8999999999999999875
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.39 E-value=4.9e-07 Score=73.01 Aligned_cols=49 Identities=16% Similarity=0.451 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---chHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581 173 KGQWTDEEDRKLIKLVKQYGV---RKWAQISERMAGRAGKQCRERWHNHLRP 221 (470)
Q Consensus 173 KG~WT~EED~~Ll~lV~~yG~---~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p 221 (470)
...||.+|+++|.+++..|+. .+|.+||..|||||..+|+.||..++.-
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 467999999999999999974 4799999999999999999999987653
No 69
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.39 E-value=7.9e-07 Score=94.03 Aligned_cols=48 Identities=25% Similarity=0.479 Sum_probs=44.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581 225 KDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRR 272 (470)
Q Consensus 225 k~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr 272 (470)
...||++|-.++++++.+||.+|..||..++.||..|||++|....++
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999865544
No 70
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.18 E-value=5.9e-07 Score=75.67 Aligned_cols=56 Identities=18% Similarity=0.328 Sum_probs=49.9
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHHHh-----cCCChhhhhhhhhhcccc
Q 046581 161 RSNKKGASVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISERM-----AGRAGKQCRERWHNHLRP 221 (470)
Q Consensus 161 rRw~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~l-----pgRT~~Qcr~Rw~~~L~p 221 (470)
.+|.++|.+ .+||.||++.|++|+++|+ -+|..|+..+ ++||..++++||..+.+.
T Consensus 22 eeY~~~L~~----~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 22 QEYQLYLHD----DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp HHHHHHTCB----TTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC----CCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 578788865 8999999999999999999 5999999999 589999999999886653
No 71
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.02 E-value=6.9e-06 Score=63.55 Aligned_cols=46 Identities=13% Similarity=0.340 Sum_probs=41.5
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCh-HHHHhh-hCCCCCHHHHHHHHHHhH
Q 046581 225 KDSWSEEEERILVEAHARI--------GNR-WAEIAK-HIPGRTENSIKNHWNATK 270 (470)
Q Consensus 225 k~~WT~EED~~Ll~lv~~~--------G~k-Ws~IAk-~LpgRT~~q~KnRw~~ll 270 (470)
+.+||+|||.+|++.|.++ |++ |.+++. .+|.+|-.+||+||...+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999 544 999999 799999999999998755
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.96 E-value=9.3e-06 Score=67.79 Aligned_cols=48 Identities=13% Similarity=0.348 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHhCC---hHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 226 DSWSEEEERILVEAHARIGN---RWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 226 ~~WT~EED~~Ll~lv~~~G~---kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
-.||.|||+.||...++-|. .|+.||+.|.+|+.+||++||+.|++--
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 46999999999999999987 7999999999999999999999998753
No 73
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.95 E-value=2.3e-05 Score=78.64 Aligned_cols=99 Identities=21% Similarity=0.313 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcc-----------------------------------
Q 046581 175 QWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHL----------------------------------- 219 (470)
Q Consensus 175 ~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L----------------------------------- 219 (470)
.||..+...++.++.+||..+|..||..|+|+|...++..+.-..
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~~ 191 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQ 191 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999999999999889999999999999988854331100
Q ss_pred ---------------ccccccCCCCHHHHHHHHHHHHHhCC----hHHHHhh------------hCCCCCHHHHHHHHHH
Q 046581 220 ---------------RPDIKKDSWSEEEERILVEAHARIGN----RWAEIAK------------HIPGRTENSIKNHWNA 268 (470)
Q Consensus 220 ---------------~p~ikk~~WT~EED~~Ll~lv~~~G~----kWs~IAk------------~LpgRT~~q~KnRw~~ 268 (470)
-+..+...||++||..||-++.+||- .|..|.. ++..||+.+|..|.+.
T Consensus 192 Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~t 271 (304)
T 1ofc_X 192 KMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNT 271 (304)
T ss_dssp HHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHH
T ss_pred HHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence 01123468999999999999999994 6999963 3457999999999999
Q ss_pred hHHhh
Q 046581 269 TKRRQ 273 (470)
Q Consensus 269 llrr~ 273 (470)
|++-.
T Consensus 272 Li~~i 276 (304)
T 1ofc_X 272 LITLI 276 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 74
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=1.8e-05 Score=61.76 Aligned_cols=52 Identities=17% Similarity=0.364 Sum_probs=46.1
Q ss_pred ccccccCCCCHHHHHHHHHHHHHhCChHHHHhh-hCCCCCHHHHHHHHHHhHH
Q 046581 220 RPDIKKDSWSEEEERILVEAHARIGNRWAEIAK-HIPGRTENSIKNHWNATKR 271 (470)
Q Consensus 220 ~p~ikk~~WT~EED~~Ll~lv~~~G~kWs~IAk-~LpgRT~~q~KnRw~~llr 271 (470)
.|.+....||+||-.+..+++.+||.+|..|++ .||+||..+|...|..-+|
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk 56 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK 56 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHHC
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcccC
Confidence 356777899999999999999999999999999 5899999999998875443
No 75
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.03 E-value=2.6e-06 Score=67.57 Aligned_cols=46 Identities=13% Similarity=0.402 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC---hHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581 226 DSWSEEEERILVEAHARIGN---RWAEIAKHIPGRTENSIKNHWNATKRR 272 (470)
Q Consensus 226 ~~WT~EED~~Ll~lv~~~G~---kWs~IAk~LpgRT~~q~KnRw~~llrr 272 (470)
-.||.|||+.||...++-|. .|+.||+.| +|+++||++||..|++-
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 36999999999999999997 799999999 99999999999998763
No 76
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=3.4e-05 Score=60.23 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=44.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCchHHHHHH-HhcCCChhhhhhhhhh
Q 046581 168 SVALIKGQWTDEEDRKLIKLVKQYGVRKWAQISE-RMAGRAGKQCRERWHN 217 (470)
Q Consensus 168 ~p~lkKG~WT~EED~~Ll~lV~~yG~~~Ws~IA~-~lpgRT~~Qcr~Rw~~ 217 (470)
.|.+....||+||-++..+.+.+|| .+|..|++ .|++|+..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 4677788999999999999999999 69999999 5999999999988864
No 77
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.75 E-value=5.7e-05 Score=63.51 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHHHHhCChHHHHhhhCC-----CCCHHHHHHHHHHhHHhhhhcc
Q 046581 226 DSWSEEEERILVEAHARIGNRWAEIAKHIP-----GRTENSIKNHWNATKRRQNSRR 277 (470)
Q Consensus 226 ~~WT~EED~~Ll~lv~~~G~kWs~IAk~Lp-----gRT~~q~KnRw~~llrr~~~k~ 277 (470)
..||.||...|++++++|.-+|..|+..+. .||..++|.||..+.++....+
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999874 7999999999999988765543
No 78
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.71 E-value=5.6e-06 Score=66.70 Aligned_cols=43 Identities=26% Similarity=0.519 Sum_probs=38.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCC----hHHHHhhhCCCCCHHHHHHHHH
Q 046581 225 KDSWSEEEERILVEAHARIGN----RWAEIAKHIPGRTENSIKNHWN 267 (470)
Q Consensus 225 k~~WT~EED~~Ll~lv~~~G~----kWs~IAk~LpgRT~~q~KnRw~ 267 (470)
...||.+|+++|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999985 7999999999999999999985
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.68 E-value=5.4e-06 Score=66.78 Aligned_cols=44 Identities=11% Similarity=0.365 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCc---hHHHHHHHhcCCChhhhhhhhh
Q 046581 173 KGQWTDEEDRKLIKLVKQYGVR---KWAQISERMAGRAGKQCRERWH 216 (470)
Q Consensus 173 KG~WT~EED~~Ll~lV~~yG~~---~Ws~IA~~lpgRT~~Qcr~Rw~ 216 (470)
...||.||+++|.+++..|+.. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4579999999999999999743 7999999999999999999995
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.43 E-value=0.00016 Score=60.80 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=43.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581 225 KDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRR 272 (470)
Q Consensus 225 k~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr 272 (470)
...||+||.++..+++..||.+|..||..||+||..+|-..|...+|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~Kk~ 90 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 90 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccccC
Confidence 468999999999999999999999999999999999999999866543
No 81
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.41 E-value=0.00012 Score=61.06 Aligned_cols=52 Identities=17% Similarity=0.415 Sum_probs=44.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC--chHHHHHHHhcCCChhhhhhhhhhccc
Q 046581 169 VALIKGQWTDEEDRKLIKLVKQYGV--RKWAQISERMAGRAGKQCRERWHNHLR 220 (470)
Q Consensus 169 p~lkKG~WT~EED~~Ll~lV~~yG~--~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~ 220 (470)
..-+---||.|||+.|+...++-|. ..|..||+.|.+|++.|+++||+.+++
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3334456999999999999999985 369999999999999999999987543
No 82
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.38 E-value=0.00027 Score=56.30 Aligned_cols=47 Identities=23% Similarity=0.420 Sum_probs=42.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCChHHHHhh-hCCCCCHHHHHHHHHHhHH
Q 046581 225 KDSWSEEEERILVEAHARIGNRWAEIAK-HIPGRTENSIKNHWNATKR 271 (470)
Q Consensus 225 k~~WT~EED~~Ll~lv~~~G~kWs~IAk-~LpgRT~~q~KnRw~~llr 271 (470)
...||+||-.+..+++.+||.+|..|++ .||+||..+|...|..-+|
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKk 55 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKT 55 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhcC
Confidence 4589999999999999999999999999 5999999999999985443
No 83
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.34 E-value=0.00016 Score=76.60 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc
Q 046581 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH 218 (470)
Q Consensus 173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~ 218 (470)
..+||+||-.++++++.+|| ++|..||+.|+.||..||+.+|.++
T Consensus 380 ~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 57999999999999999999 6999999999999999999999764
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.24 E-value=0.00025 Score=59.56 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhh
Q 046581 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHN 217 (470)
Q Consensus 173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~ 217 (470)
...||+||.++..+....|| .+|..|+..||+||..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45699999999999999999 699999999999999999998854
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.21 E-value=0.00034 Score=55.71 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHH-HhcCCChhhhhhhhhh
Q 046581 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISE-RMAGRAGKQCRERWHN 217 (470)
Q Consensus 173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~-~lpgRT~~Qcr~Rw~~ 217 (470)
...||+||-.+..+.+..|| .+|..|++ .||+||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 45699999999999999999 69999999 6999999999998863
No 86
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.27 E-value=5.5e-05 Score=60.02 Aligned_cols=45 Identities=20% Similarity=0.505 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHhCCc--hHHHHHHHhcCCChhhhhhhhhhccc
Q 046581 175 QWTDEEDRKLIKLVKQYGVR--KWAQISERMAGRAGKQCRERWHNHLR 220 (470)
Q Consensus 175 ~WT~EED~~Ll~lV~~yG~~--~Ws~IA~~lpgRT~~Qcr~Rw~~~L~ 220 (470)
.||.|||..|+..+++-|.. .|..||+.| +|++.|+.+||..++.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 59999999999999999852 699999999 9999999999998765
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.10 E-value=0.00028 Score=57.70 Aligned_cols=49 Identities=31% Similarity=0.678 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------chHHHHHHHhc----CCChhhhhhhhhhccc
Q 046581 172 IKGQWTDEEDRKLIKLVKQYGV---------RKWAQISERMA----GRAGKQCRERWHNHLR 220 (470)
Q Consensus 172 kKG~WT~EED~~Ll~lV~~yG~---------~~Ws~IA~~lp----gRT~~Qcr~Rw~~~L~ 220 (470)
+...||.+|-.+|+++...... ..|..||..|. .||+.||+.+|.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999986421 15999999985 7999999999988653
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.04 E-value=0.00057 Score=55.83 Aligned_cols=51 Identities=16% Similarity=0.487 Sum_probs=42.7
Q ss_pred cCCCCHHHHHHHHHHHHHhCC----------hHHHHhhhCC----CCCHHHHHHHHHHhHHhhhh
Q 046581 225 KDSWSEEEERILVEAHARIGN----------RWAEIAKHIP----GRTENSIKNHWNATKRRQNS 275 (470)
Q Consensus 225 k~~WT~EED~~Ll~lv~~~G~----------kWs~IAk~Lp----gRT~~q~KnRw~~llrr~~~ 275 (470)
...||.+|-.+||++...... .|..||..|. .||+.||+.+|+.|++..++
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999876332 5999999863 69999999999999887543
No 89
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.02 E-value=0.0022 Score=60.12 Aligned_cols=101 Identities=15% Similarity=0.245 Sum_probs=72.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--CchHHHHHHH--hcCCChhhhhhhhhhcc----------------------------
Q 046581 172 IKGQWTDEEDRKLIKLVKQYG--VRKWAQISER--MAGRAGKQCRERWHNHL---------------------------- 219 (470)
Q Consensus 172 kKG~WT~EED~~Ll~lV~~yG--~~~Ws~IA~~--lpgRT~~Qcr~Rw~~~L---------------------------- 219 (470)
....||+.|-..|++++.+|| ..+|..|+.. |.+++...++..+..++
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPT 85 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCE
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchh
Confidence 445799999999999999999 5689999875 56888766554221100
Q ss_pred -----------------------ccc--------------------cccCCCCHHHHHHHHHHHHHhC-ChHHHHhh--h
Q 046581 220 -----------------------RPD--------------------IKKDSWSEEEERILVEAHARIG-NRWAEIAK--H 253 (470)
Q Consensus 220 -----------------------~p~--------------------ikk~~WT~EED~~Ll~lv~~~G-~kWs~IAk--~ 253 (470)
+.. .-...||.+||..||..+.+|| ++|.+|-. .
T Consensus 86 ~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~ 165 (211)
T 4b4c_A 86 FRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPD 165 (211)
T ss_dssp EEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSS
T ss_pred hhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChh
Confidence 000 0123599999999999999999 89999954 2
Q ss_pred C------------CCCCHHHHHHHHHHhHHh
Q 046581 254 I------------PGRTENSIKNHWNATKRR 272 (470)
Q Consensus 254 L------------pgRT~~q~KnRw~~llrr 272 (470)
| ..++...|..|-..|++-
T Consensus 166 l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 166 LSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred cCccccccccccccCCChHHHHHHHHHHHHH
Confidence 1 124566799998887764
No 90
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.74 E-value=0.0038 Score=64.18 Aligned_cols=97 Identities=23% Similarity=0.402 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHHHHHhc-CCChhhhhhhhhhcc-----------------------------------
Q 046581 176 WTDEEDRKLIKLVKQYGVRKWAQISERMA-GRAGKQCRERWHNHL----------------------------------- 219 (470)
Q Consensus 176 WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp-gRT~~Qcr~Rw~~~L----------------------------------- 219 (470)
||.-+=..++.++.+||..+-..||..|. |+|...|+. |..++
T Consensus 126 WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~ 204 (374)
T 2y9y_A 126 WNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEALR 204 (374)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999888999999997 899888763 31110
Q ss_pred -------cc----------c-cccCCCCHHHHHHHHHHHHHhC----ChHHHHhhh------------CCCCCHHHHHHH
Q 046581 220 -------RP----------D-IKKDSWSEEEERILVEAHARIG----NRWAEIAKH------------IPGRTENSIKNH 265 (470)
Q Consensus 220 -------~p----------~-ikk~~WT~EED~~Ll~lv~~~G----~kWs~IAk~------------LpgRT~~q~KnR 265 (470)
+| . .+...||++||..||-++.+|| +.|..|-.. |..||+..|..|
T Consensus 205 ~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rR 284 (374)
T 2y9y_A 205 RKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARR 284 (374)
T ss_dssp HHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHH
T ss_pred HHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHH
Confidence 00 0 0345799999999999999998 469999443 347999999999
Q ss_pred HHHhHHhh
Q 046581 266 WNATKRRQ 273 (470)
Q Consensus 266 w~~llrr~ 273 (470)
.+.|++..
T Consensus 285 c~tLi~~I 292 (374)
T 2y9y_A 285 GNTLLQCL 292 (374)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.49 E-value=0.0018 Score=54.35 Aligned_cols=47 Identities=21% Similarity=0.459 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCchHHHHHHHhc-----CCChhhhhhhhhhccc
Q 046581 173 KGQWTDEEDRKLIKLVKQYGVRKWAQISERMA-----GRAGKQCRERWHNHLR 220 (470)
Q Consensus 173 KG~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lp-----gRT~~Qcr~Rw~~~L~ 220 (470)
...||.||...|++|+++|. -+|..|+.... .||..++++||..+..
T Consensus 30 ~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999 59999999874 7999999999998765
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.39 E-value=0.0036 Score=62.85 Aligned_cols=106 Identities=11% Similarity=0.084 Sum_probs=70.4
Q ss_pred CCCCchHHHHHHHHHHHcCCCCcccccChhhccccc-CCCcccccCccccc-----------------------------
Q 046581 108 TTTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYK-EGSKSACNNNKGMI----------------------------- 157 (470)
Q Consensus 108 g~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~-grs~~~cR~~~q~~----------------------------- 157 (470)
+.||..+...++.++.+||.++ |..||..+ |++....+.-..++
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~------~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~ 184 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDD------IDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLS 184 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTC------HHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHH------HHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999765 99998755 33321111000000
Q ss_pred ------------cccccccccCCCCCCCCCCCHHHHHHHHHHHHHhCC---chHHHHHH------------HhcCCChhh
Q 046581 158 ------------GHKRSNKKGASVALIKGQWTDEEDRKLIKLVKQYGV---RKWAQISE------------RMAGRAGKQ 210 (470)
Q Consensus 158 ------------~~~rRw~~~l~p~lkKG~WT~EED~~Ll~lV~~yG~---~~Ws~IA~------------~lpgRT~~Q 210 (470)
.+...-.+...+..+...||+|||..|+-++.+||. +.|..|.. ++..||+.+
T Consensus 185 ~~~~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~e 264 (304)
T 1ofc_X 185 IKKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALE 264 (304)
T ss_dssp HHHHHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHH
T ss_pred HHHHHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHH
Confidence 000000011112336678999999999999999999 89999973 334688888
Q ss_pred hhhhhhhcc
Q 046581 211 CRERWHNHL 219 (470)
Q Consensus 211 cr~Rw~~~L 219 (470)
+..|-..++
T Consensus 265 l~rRc~tLi 273 (304)
T 1ofc_X 265 LQRRCNTLI 273 (304)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888876543
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.28 E-value=0.18 Score=39.49 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=40.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCch--HHHHHHHhc--CCChhhhhhhhhhc
Q 046581 171 LIKGQWTDEEDRKLIKLVKQYGVRK--WAQISERMA--GRAGKQCRERWHNH 218 (470)
Q Consensus 171 lkKG~WT~EED~~Ll~lV~~yG~~~--Ws~IA~~lp--gRT~~Qcr~Rw~~~ 218 (470)
..+-.||+|.-++.+++|.+.|..+ ++.|.+.|. |.|..+|+.+.+.|
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4566799999999999999999432 899999985 88999999888765
No 94
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.68 E-value=0.32 Score=38.09 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=40.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCh---HHHHhhhC--CCCCHHHHHHHHHHhHH
Q 046581 224 KKDSWSEEEERILVEAHARIGNR---WAEIAKHI--PGRTENSIKNHWNATKR 271 (470)
Q Consensus 224 kk~~WT~EED~~Ll~lv~~~G~k---Ws~IAk~L--pgRT~~q~KnRw~~llr 271 (470)
.+-.||+|..+..+++|..+|.. |..|.+.| +|.|..+|+.|...+.-
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999964 78998875 79999999999876543
No 95
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=89.36 E-value=0.77 Score=47.22 Aligned_cols=46 Identities=20% Similarity=0.412 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---chHHHHHHHh------------cCCChhhhhhhhhh
Q 046581 172 IKGQWTDEEDRKLIKLVKQYGV---RKWAQISERM------------AGRAGKQCRERWHN 217 (470)
Q Consensus 172 kKG~WT~EED~~Ll~lV~~yG~---~~Ws~IA~~l------------pgRT~~Qcr~Rw~~ 217 (470)
++..||++||..|+-++.+||. +.|..|-..+ ..||+..+..|...
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t 287 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT 287 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence 4668999999999999999998 8899996653 25666666666544
No 96
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=87.96 E-value=0.61 Score=43.32 Aligned_cols=50 Identities=16% Similarity=0.316 Sum_probs=41.7
Q ss_pred cccCCCCHHHHHHHHHHHHHhC---ChHHHHhhh--CCCCCHHHHHHHHHHhHHh
Q 046581 223 IKKDSWSEEEERILVEAHARIG---NRWAEIAKH--IPGRTENSIKNHWNATKRR 272 (470)
Q Consensus 223 ikk~~WT~EED~~Ll~lv~~~G---~kWs~IAk~--LpgRT~~q~KnRw~~llrr 272 (470)
-....||+.|-..|+.++.+|| .+|..|+.. |.+||...|+..+..+..+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999 579999864 7899999999988877655
No 97
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=82.89 E-value=0.33 Score=53.49 Aligned_cols=14 Identities=0% Similarity=0.057 Sum_probs=9.8
Q ss_pred CCCCchHHHHHHHH
Q 046581 108 TTTTTLEPTSFVDG 121 (470)
Q Consensus 108 g~WT~EED~~Ll~~ 121 (470)
..|++.|=+.|+..
T Consensus 280 ~HFSP~DwQ~Lin~ 293 (724)
T 3ntt_A 280 SHWSPRDWQRLINN 293 (724)
T ss_dssp GTCCHHHHHHHHHH
T ss_pred eccCHHHHHHHHHh
Confidence 45788777777665
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=82.74 E-value=0.84 Score=45.01 Aligned_cols=28 Identities=46% Similarity=0.858 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHHHH
Q 046581 174 GQWTDEEDRKLIKLVKQYGVRKWAQISE 201 (470)
Q Consensus 174 G~WT~EED~~Ll~lV~~yG~~~Ws~IA~ 201 (470)
..|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999964
No 99
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=82.48 E-value=0.37 Score=53.14 Aligned_cols=14 Identities=0% Similarity=0.040 Sum_probs=9.6
Q ss_pred CCCCchHHHHHHHH
Q 046581 108 TTTTTLEPTSFVDG 121 (470)
Q Consensus 108 g~WT~EED~~Ll~~ 121 (470)
..|++.|=+.|+..
T Consensus 290 ~hFSP~DwQ~Lin~ 303 (736)
T 3ng9_A 290 CHFSPRDWQRLINN 303 (736)
T ss_dssp GTCCHHHHHHHHHH
T ss_pred eccCHHHHHHHHHh
Confidence 45788777777665
No 100
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=80.27 E-value=0.39 Score=51.00 Aligned_cols=12 Identities=8% Similarity=-0.133 Sum_probs=6.2
Q ss_pred CCchHHHHHHHH
Q 046581 110 TTTLEPTSFVDG 121 (470)
Q Consensus 110 WT~EED~~Ll~~ 121 (470)
|++.|=+.|+..
T Consensus 121 FSP~DWQ~Linn 132 (584)
T 4dpv_Z 121 FNPGDWQLIVNT 132 (584)
T ss_dssp CCHHHHHHHHHH
T ss_pred cCHHHHHHHHHh
Confidence 556555555443
No 101
>1k3v_A Capsid protein VP2; icosahadral, beta sheet, icosahedral virus; 3.50A {Porcine parvovirus} SCOP: b.121.5.2
Probab=78.87 E-value=0.53 Score=50.88 Aligned_cols=16 Identities=13% Similarity=-0.080 Sum_probs=7.7
Q ss_pred ccchHHHHHHhhhhcc
Q 046581 59 NCSQQQQQQTQNIARN 74 (470)
Q Consensus 59 ~~~~~~q~~~~~~~~~ 74 (470)
|++|.-=|.+.|+.+.
T Consensus 120 hFsP~DwQ~L~n~~~~ 135 (579)
T 1k3v_A 120 WFNPADWQLISNNMTE 135 (579)
T ss_dssp HCCHHHHHHHHHHEEE
T ss_pred ccCHHHHHHHHHhccc
Confidence 5555444444444443
No 102
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A {Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Probab=74.44 E-value=0.63 Score=47.89 Aligned_cols=27 Identities=52% Similarity=1.065 Sum_probs=4.2
Q ss_pred CCCCCCCCC-CCCCCCCCCCcccccccC
Q 046581 7 RGGGGGGGG-GGGGSGNTSFRYQNLQQN 33 (470)
Q Consensus 7 ~~~~~g~g~-~gg~~~~~~~~~~~~~~~ 33 (470)
||||+|||| ||||++...|-....-+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~AYEHatt~PN 31 (473)
T 3n44_F 4 GGGGSGGGGSGGGGSGGGGYEHVTVIPN 31 (473)
T ss_dssp -------------------CEEEEEEES
T ss_pred cCCCCCCCCCCCCCCccceeeeeeecCC
Confidence 344444444 444455555555444333
No 103
>1k3v_A Capsid protein VP2; icosahadral, beta sheet, icosahedral virus; 3.50A {Porcine parvovirus} SCOP: b.121.5.2
Probab=69.86 E-value=1.2 Score=48.16 Aligned_cols=13 Identities=0% Similarity=-0.204 Sum_probs=8.4
Q ss_pred CCCchHHHHHHHH
Q 046581 109 TTTTLEPTSFVDG 121 (470)
Q Consensus 109 ~WT~EED~~Ll~~ 121 (470)
-|++.|=+.|+..
T Consensus 120 hFsP~DwQ~L~n~ 132 (579)
T 1k3v_A 120 WFNPADWQLISNN 132 (579)
T ss_dssp HCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHh
Confidence 4677776666655
No 104
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=65.74 E-value=12 Score=36.83 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=42.3
Q ss_pred cCCCCHHHHHHHHHHHHHhC---ChHHHHhh--hCCCCCHHHHHHHHHHhHHh
Q 046581 225 KDSWSEEEERILVEAHARIG---NRWAEIAK--HIPGRTENSIKNHWNATKRR 272 (470)
Q Consensus 225 k~~WT~EED~~Ll~lv~~~G---~kWs~IAk--~LpgRT~~q~KnRw~~llrr 272 (470)
+++||+.|-..|++++.+|| .+|..|+. .|+.|+...++.-++.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 56899999999999999999 48999976 48899999999999877654
No 105
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.16 E-value=16 Score=26.74 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 228 WSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 228 WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
+++ .+..++.++-..|-.+.+||..+ |-+...|+.+....+++-
T Consensus 16 L~~-~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LTT-DQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SCH-HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 444 44555666667788999999999 889999999888776553
No 106
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=49.28 E-value=21 Score=26.89 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHH----hCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 228 WSEEEERILVEAHAR----IGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 228 WT~EED~~Ll~lv~~----~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
.++. +..++.+.-- .|-.|.+||..+ |-+...|+.+....+++-
T Consensus 11 L~~~-er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSER-EAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHH-HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3444 4445555444 567899999999 999999999888776654
No 107
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein; peptide-MHC complex, immunoglobulin fold system; 2.70A {Synthetic}
Probab=47.73 E-value=4.3 Score=42.37 Aligned_cols=14 Identities=79% Similarity=1.616 Sum_probs=0.4
Q ss_pred CCCCCCCCCCCCCC
Q 046581 7 RGGGGGGGGGGGGS 20 (470)
Q Consensus 7 ~~~~~g~g~~gg~~ 20 (470)
|||-+||||||||.
T Consensus 127 ~~~~~~~~~~~~~~ 140 (443)
T 3nwm_A 127 GGGSGGGGSGGGGS 140 (443)
T ss_dssp C-------------
T ss_pred cccccccccCCCcc
Confidence 33333333444433
No 108
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=46.35 E-value=22 Score=30.67 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCC-------chHHHHHHHhcC-C----ChhhhhhhhhhccccccccCCCCHHHHHHHHHHHH
Q 046581 182 RKLIKLVKQYGV-------RKWAQISERMAG-R----AGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHA 241 (470)
Q Consensus 182 ~~Ll~lV~~yG~-------~~Ws~IA~~lpg-R----T~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~ 241 (470)
-+|..+|.+.|- +.|..||..|.- . .....+..|.++|-|--. .+++|-..|.+-|.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~---~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS---LSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC---cCHHHHhhHHHHHH
Confidence 478888888862 369999999942 1 246788999999886543 88899888887764
No 109
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=45.27 E-value=8.8 Score=23.39 Aligned_cols=11 Identities=73% Similarity=1.425 Sum_probs=4.3
Q ss_pred CCCCCCCCCCC
Q 046581 7 RGGGGGGGGGG 17 (470)
Q Consensus 7 ~~~~~g~g~~g 17 (470)
+-||.+++|+|
T Consensus 8 rpg~s~~sg~g 18 (21)
T 3u85_B 8 RPGTTGGGGGG 18 (26)
T ss_pred CCCcccCCCcc
Confidence 33444433333
No 110
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=44.65 E-value=21 Score=26.50 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=31.0
Q ss_pred HHHHHHHHHH----HhCChHHHHhhhCCCCCHHHHHHHHHHhHHhhh
Q 046581 232 EERILVEAHA----RIGNRWAEIAKHIPGRTENSIKNHWNATKRRQN 274 (470)
Q Consensus 232 ED~~Ll~lv~----~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~ 274 (470)
.+..++.+.- ..|-.+.+||..+ |-+...|+.+....+++-.
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 3444454544 2467899999999 9999999999887776543
No 111
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein; peptide-MHC complex, immunoglobulin fold system; 2.70A {Synthetic}
Probab=43.09 E-value=5.3 Score=41.65 Aligned_cols=22 Identities=50% Similarity=1.107 Sum_probs=1.3
Q ss_pred CcccccCCCCCCCCCCCCCCCC
Q 046581 1 MEAAAARGGGGGGGGGGGGSGN 22 (470)
Q Consensus 1 ~~~~~~~~~~~g~g~~gg~~~~ 22 (470)
|+-||++||||||||.+.+..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~ag 146 (443)
T 3nwm_A 125 MGGGGSGGGGSGGGGSGGGGSG 146 (443)
T ss_dssp CCC-------------------
T ss_pred cccccccccccCCCccccccCC
Confidence 3445556666666655555543
No 112
>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage display, selectively infective phages, viral protein; HET: TRO; 1.46A {Enterobacteria phage M13} SCOP: b.37.1.1 b.37.1.1 PDB: 2g3p_A 3dgs_A 3knq_A 1fgp_A
Probab=42.88 E-value=4.5 Score=37.33 Aligned_cols=12 Identities=17% Similarity=0.584 Sum_probs=6.1
Q ss_pred hhhhcccCCccc
Q 046581 50 IDRFLWGQNNCS 61 (470)
Q Consensus 50 ~d~f~~g~~~~~ 61 (470)
+..|||.-+.+.
T Consensus 131 ~~~~~~~~~~~~ 142 (217)
T 1g3p_A 131 LNTFMFQNNRFR 142 (217)
T ss_dssp SSCEEETTEEEE
T ss_pred cceeeecccccc
Confidence 345666554443
No 113
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=39.74 E-value=25 Score=29.82 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC--------hHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581 235 ILVEAHARIGN--------RWAEIAKHIPGRTENSIKNHWNATKRR 272 (470)
Q Consensus 235 ~Ll~lv~~~G~--------kWs~IAk~LpgRT~~q~KnRw~~llrr 272 (470)
.|..+|.+.|+ .|.+||..|.--....+|..|..++-.
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 57888888875 699999987433378999999877654
No 114
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=39.26 E-value=37 Score=26.70 Aligned_cols=41 Identities=24% Similarity=0.312 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 232 EERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 232 ED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
.+..++.++...|-.-.+||..| |-+...|+.+....+++-
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44456666666778899999999 899999999988766553
No 115
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.89 E-value=21 Score=30.28 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=30.6
Q ss_pred HHHHHHHHhCC-------chHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581 183 KLIKLVKQYGV-------RKWAQISERMAGRAGKQCRERWHNHLRP 221 (470)
Q Consensus 183 ~Ll~lV~~yG~-------~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p 221 (470)
+|..+|.+.|- +.|..||..|+--.+..++..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 67888887762 3699999999655578889989888865
No 116
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=38.88 E-value=34 Score=31.30 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=21.6
Q ss_pred cccccCC-CCCCCCCCCHHHHHHHH--------HHHHHhC
Q 046581 162 SNKKGAS-VALIKGQWTDEEDRKLI--------KLVKQYG 192 (470)
Q Consensus 162 Rw~~~l~-p~lkKG~WT~EED~~Ll--------~lV~~yG 192 (470)
.++.... |....|-||+|+|+.|. ++++++|
T Consensus 102 ~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 102 MFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp HHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred HHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 3444333 67889999999998874 5555665
No 117
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=38.42 E-value=91 Score=28.52 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCch--HHHHHHHhcCCChh---hhhhhhhhccc-cccccCCCCHHHHHHHH
Q 046581 181 DRKLIKLVKQYGVRK--WAQISERMAGRAGK---QCRERWHNHLR-PDIKKDSWSEEEERILV 237 (470)
Q Consensus 181 D~~Ll~lV~~yG~~~--Ws~IA~~lpgRT~~---Qcr~Rw~~~L~-p~ikk~~WT~EED~~Ll 237 (470)
+.++..+..+.|.++ =..|-..+-+.+.. .+-+.|..-.. |....|.||.|+|+.|.
T Consensus 64 ~~Lv~~l~~e~Gi~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 64 EKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHHHHCBCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 456666767778543 23444455555543 44455544333 45677999999999885
No 118
>1s58_A B19 parvovirus capsid; icosahedral capsid, beta-barrel, icosahedral virus; 3.50A {Human parvovirus B19} SCOP: b.121.5.2
Probab=35.06 E-value=11 Score=40.70 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=8.6
Q ss_pred CCCCCCCCCcchhH
Q 046581 400 EPPAAATNMYSDLY 413 (470)
Q Consensus 400 ~~~~~~~~~~~~~~ 413 (470)
.+|..+.||+.+||
T Consensus 510 ~~p~~~~~~p~~l~ 523 (554)
T 1s58_A 510 YPPHAAGHLPYVLY 523 (554)
T ss_dssp CCCCBTTBCSSSCC
T ss_pred CCCCcCCCCceEEe
Confidence 34666677776654
No 119
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=34.63 E-value=56 Score=26.95 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCC--------hHHHHhhhCCCC-C---HHHHHHHHHHhHHh
Q 046581 234 RILVEAHARIGN--------RWAEIAKHIPGR-T---ENSIKNHWNATKRR 272 (470)
Q Consensus 234 ~~Ll~lv~~~G~--------kWs~IAk~LpgR-T---~~q~KnRw~~llrr 272 (470)
-.|..+|.+.|+ .|.+||..|.-- + ...+|..|..++-.
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 357777777775 699999998322 2 46788888877654
No 120
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=33.71 E-value=49 Score=27.99 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCC--------hHHHHhhhCCCCC----HHHHHHHHHHhHHh
Q 046581 234 RILVEAHARIGN--------RWAEIAKHIPGRT----ENSIKNHWNATKRR 272 (470)
Q Consensus 234 ~~Ll~lv~~~G~--------kWs~IAk~LpgRT----~~q~KnRw~~llrr 272 (470)
-.|..+|.+.|+ .|.+|+..|.--. ...+|..|..++-.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 357888888885 6999999883211 56789999876654
No 121
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.34 E-value=34 Score=29.98 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHHhhhh
Q 046581 231 EEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKRRQNS 275 (470)
Q Consensus 231 EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~ 275 (470)
+-|..|+.++++.+ -.|.+||+.+ |-|...|+.|++.|.+...-
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 45778888887766 4699999999 99999999999999877553
No 122
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=32.50 E-value=34 Score=29.49 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC--------hHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 235 ILVEAHARIGN--------RWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 235 ~Ll~lv~~~G~--------kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
.|..+|.+.|+ .|.+|+..|.--....+|..|..++-..
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 98 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 98 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHH
Confidence 47777777765 6999999873333899999998877653
No 123
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=31.91 E-value=29 Score=30.39 Aligned_cols=43 Identities=16% Similarity=0.363 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhccccc
Q 046581 179 EEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRPD 222 (470)
Q Consensus 179 EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ 222 (470)
+-|.+|+.+.++.+.-.|..||+.+ |-+...|+.|+..+....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 5688899999988878999999999 899999999998765443
No 124
>1s58_A B19 parvovirus capsid; icosahedral capsid, beta-barrel, icosahedral virus; 3.50A {Human parvovirus B19} SCOP: b.121.5.2
Probab=31.13 E-value=14 Score=39.85 Aligned_cols=22 Identities=9% Similarity=-0.133 Sum_probs=9.8
Q ss_pred ccchHHHHHHhhhhccCcccee
Q 046581 59 NCSQQQQQQTQNIARNNKERVI 80 (470)
Q Consensus 59 ~~~~~~q~~~~~~~~~~~~~~~ 80 (470)
|++|.-=|.+.|+.+.-.|.-|
T Consensus 98 hFsP~DWQ~L~n~~~~~rPksl 119 (554)
T 1s58_A 98 FFSPLEFQHLIENYGSIAPDAL 119 (554)
T ss_dssp HSCTHHHHHHHHHCSCBCEEEE
T ss_pred cCCHHHHHHHHHhccceeccce
Confidence 5555443444444443444333
No 125
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=31.03 E-value=72 Score=23.77 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 228 WSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 228 WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
+|+.|-++| .++ ..|-...+||..+ |-+...|+.+....+++-
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455554444 444 5677899999999 889999999988877654
No 126
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.16 E-value=65 Score=27.47 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCC--------hHHHHhhhCCCC--C--HHHHHHHHHHhHHh
Q 046581 234 RILVEAHARIGN--------RWAEIAKHIPGR--T--ENSIKNHWNATKRR 272 (470)
Q Consensus 234 ~~Ll~lv~~~G~--------kWs~IAk~LpgR--T--~~q~KnRw~~llrr 272 (470)
-.|..+|.+.|+ .|.+|+..|.-- + ...+|..|..++-.
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 357777888875 699999988321 1 35788888877654
No 127
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.63 E-value=2.6e+02 Score=23.71 Aligned_cols=66 Identities=9% Similarity=0.128 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc------cccccc----cCCCCHHHHHHHHHHHHHh
Q 046581 174 GQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH------LRPDIK----KDSWSEEEERILVEAHARI 243 (470)
Q Consensus 174 G~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~------L~p~ik----k~~WT~EED~~Ll~lv~~~ 243 (470)
...|.++-..++.++. -| .....||+.+ |.+...++ ||... +.+... ....++++.+.|++++.+.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~l-gis~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 99 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQL-RVSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQN 99 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHH-TCCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHC
Confidence 3588888888888884 56 4789999999 66655554 34332 222111 2357877777788777553
No 128
>3n44_F E1 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG; 2.35A {Chikungunya virus} PDB: 3n41_F* 3n42_F* 3n43_F* 2xfc_A
Probab=29.21 E-value=12 Score=38.75 Aligned_cols=13 Identities=46% Similarity=0.670 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccc
Q 046581 16 GGGGSGNTSFRYQ 28 (470)
Q Consensus 16 ~gg~~~~~~~~~~ 28 (470)
||||+|++.-+..
T Consensus 9 ~~~~~~~~~~~~~ 21 (473)
T 3n44_F 9 GGGGSGGGGSGGG 21 (473)
T ss_dssp -------------
T ss_pred CCCCCCCCCCccc
Confidence 3333333333333
No 129
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=28.98 E-value=42 Score=28.42 Aligned_cols=40 Identities=28% Similarity=0.532 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCC-------chHHHHHHHhcCCC----hhhhhhhhhhcccc
Q 046581 182 RKLIKLVKQYGV-------RKWAQISERMAGRA----GKQCRERWHNHLRP 221 (470)
Q Consensus 182 ~~Ll~lV~~yG~-------~~Ws~IA~~lpgRT----~~Qcr~Rw~~~L~p 221 (470)
-+|..+|.+.|- +.|..|+..|+--. +.+++..|.++|-|
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 468888888861 36999999995322 46778888887764
No 130
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.91 E-value=74 Score=27.47 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=25.6
Q ss_pred HHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 241 ARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 241 ~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
...|-...+||..| |-+...|+++....+++-
T Consensus 153 ~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 153 ELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 33456799999999 899999999988776654
No 131
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=28.84 E-value=66 Score=25.06 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=30.1
Q ss_pred HHHHHHHHHHH----hCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 232 EERILVEAHAR----IGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 232 ED~~Ll~lv~~----~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
.+..++.+.-- .|-.+.+||..+ |-+...|+.+....+++-
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34445555443 467899999999 999999999887766554
No 132
>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L
Probab=28.75 E-value=13 Score=32.25 Aligned_cols=9 Identities=78% Similarity=1.738 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q 046581 9 GGGGGGGGG 17 (470)
Q Consensus 9 ~~~g~g~~g 17 (470)
||.||||.|
T Consensus 3 ~~~~~~~~~ 11 (146)
T 2yc1_B 3 GGSGGGGSG 11 (146)
T ss_dssp ---------
T ss_pred cCcCCCCCC
Confidence 333333333
No 133
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=28.44 E-value=68 Score=27.40 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCC--------hHHHHhhhCCC-C---CHHHHHHHHHHhHHh
Q 046581 234 RILVEAHARIGN--------RWAEIAKHIPG-R---TENSIKNHWNATKRR 272 (470)
Q Consensus 234 ~~Ll~lv~~~G~--------kWs~IAk~Lpg-R---T~~q~KnRw~~llrr 272 (470)
-.|..+|.+.|+ .|.+||..|.- . ....+|..|..++..
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 357777888775 69999998832 2 246788888877654
No 134
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=27.56 E-value=98 Score=24.56 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhhh
Q 046581 227 SWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQN 274 (470)
Q Consensus 227 ~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~ 274 (470)
..|+.|-++|.. + ..|-.-.+||..| |-+...|+.+...++++-.
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 466666655554 4 7788899999999 8899999999888776543
No 135
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=27.41 E-value=49 Score=29.28 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHhCCch-----HHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHH
Q 046581 177 TDEEDRKLIKLVKQYGVRK-----WAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVE 238 (470)
Q Consensus 177 T~EED~~Ll~lV~~yG~~~-----Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~ 238 (470)
..+.--.|+.+..-..... =..||..+.|+|+.+||..|. +. ..+|+||++.|.+
T Consensus 94 d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~------I~-nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 94 DQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFN------IK-NDFTPEEEEEVRR 153 (160)
T ss_dssp -------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTT------CC-CCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 3333334455555455321 257888999999999999774 22 2599999988654
No 136
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=26.99 E-value=1.1e+02 Score=24.27 Aligned_cols=48 Identities=25% Similarity=0.234 Sum_probs=36.4
Q ss_pred ccCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhhh
Q 046581 224 KKDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQN 274 (470)
Q Consensus 224 kk~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~ 274 (470)
.....|+.|-++|..+. .|-.-.+||..| +-+...|+.+...++++-.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 34467887777665544 788899999999 8999999999998877643
No 137
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=26.51 E-value=52 Score=29.56 Aligned_cols=41 Identities=27% Similarity=0.550 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHhCChHH
Q 046581 196 WAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVEAHARIGNRWA 248 (470)
Q Consensus 196 Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~lv~~~G~kWs 248 (470)
=..||..+.|+|+.++|..|. |. ..||+||++.+.+ .+.|.
T Consensus 126 c~~vA~~ikgktpeeiR~~f~------I~-nd~t~eEe~~ir~-----en~W~ 166 (169)
T 3v7d_A 126 CKVVAEMIRGRSPEEIRRTFN------IV-NDFTPEEEAAIRR-----ENEWA 166 (169)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT------CC-CCCCHHHHHHHHT-----TC---
T ss_pred HHHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHH-----hcccc
Confidence 467899999999999999774 22 2499999987643 45664
No 138
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=26.39 E-value=42 Score=27.18 Aligned_cols=39 Identities=26% Similarity=0.530 Sum_probs=27.5
Q ss_pred HHHHHHHHhC-------CchHHHHHHHhcCC----Chhhhhhhhhhcccc
Q 046581 183 KLIKLVKQYG-------VRKWAQISERMAGR----AGKQCRERWHNHLRP 221 (470)
Q Consensus 183 ~Ll~lV~~yG-------~~~Ws~IA~~lpgR----T~~Qcr~Rw~~~L~p 221 (470)
+|..+|.+.| .+.|.+|+..|.-- .+.+++..|.++|-|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 5777777664 13699999999521 246788888888764
No 139
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=26.14 E-value=30 Score=29.83 Aligned_cols=39 Identities=23% Similarity=0.478 Sum_probs=28.7
Q ss_pred HHHHHHHHhC-------CchHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581 183 KLIKLVKQYG-------VRKWAQISERMAGRAGKQCRERWHNHLRP 221 (470)
Q Consensus 183 ~Ll~lV~~yG-------~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p 221 (470)
+|..+|.+.| .+.|..|+..|.--.+..++..|.++|-|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 5666776664 24699999999644478888888887765
No 140
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.63 E-value=2.9e+02 Score=22.98 Aligned_cols=66 Identities=11% Similarity=0.146 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhc------cccccc----cCCCCHHHHHHHHHHHHHh
Q 046581 174 GQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNH------LRPDIK----KDSWSEEEERILVEAHARI 243 (470)
Q Consensus 174 G~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~------L~p~ik----k~~WT~EED~~Ll~lv~~~ 243 (470)
...|.|+-..++.++. -| .....||+.+ |.+...++. |... +.+... ....++++.+.|++++.+.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G-~s~~~iA~~l-gis~~TV~r-w~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QG-VRPCDISRQL-RVSHGCVSK-ILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHHH-HHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHH-HHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 4689999888888884 56 4789999999 666655543 3321 222211 2347888888888887654
No 141
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=25.51 E-value=54 Score=27.15 Aligned_cols=41 Identities=20% Similarity=0.477 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCC-------chHHHHHHHhcC-C----Chhhhhhhhhhccccc
Q 046581 182 RKLIKLVKQYGV-------RKWAQISERMAG-R----AGKQCRERWHNHLRPD 222 (470)
Q Consensus 182 ~~Ll~lV~~yG~-------~~Ws~IA~~lpg-R----T~~Qcr~Rw~~~L~p~ 222 (470)
-+|..+|.+.|- +.|..||..|+- . .+.+++..|.++|-+-
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 467788877751 369999999952 1 2467888888888753
No 142
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=25.18 E-value=89 Score=24.09 Aligned_cols=44 Identities=23% Similarity=0.214 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 227 SWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 227 ~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
..|+.|-++|.. + ..|-.-.+||..| |-+...|+.+...++++-
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467766655544 4 5677899999999 899999999988777654
No 143
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.62 E-value=1.2e+02 Score=21.94 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 226 DSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 226 ~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
..+|+.|-++|.. + ..|-...+||..+ |-+...|+.+...++++-
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 4577777666554 4 5677899999999 889999999998877654
No 144
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=24.44 E-value=51 Score=27.19 Aligned_cols=40 Identities=30% Similarity=0.598 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCC-------chHHHHHHHhcCCC----hhhhhhhhhhcccc
Q 046581 182 RKLIKLVKQYGV-------RKWAQISERMAGRA----GKQCRERWHNHLRP 221 (470)
Q Consensus 182 ~~Ll~lV~~yG~-------~~Ws~IA~~lpgRT----~~Qcr~Rw~~~L~p 221 (470)
-+|..+|.+.|- +.|..||..|+--. +.+.+..|.++|-|
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 467778877762 26999999995322 46778888777754
No 145
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.44 E-value=1.1e+02 Score=21.65 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 233 ERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 233 D~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
+..++.+ ...|-.-.+||..| |-+...|+.+...++++-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 3445555 36677889999999 899999999998877654
No 146
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=24.07 E-value=16 Score=34.50 Aligned_cols=18 Identities=44% Similarity=1.027 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCccccc
Q 046581 13 GGGGGGGSGNTSFRYQNL 30 (470)
Q Consensus 13 ~g~~gg~~~~~~~~~~~~ 30 (470)
|||.|||+|++.++.+-+
T Consensus 12 ~~~~~~~~~~~~~~~~~~ 29 (207)
T 3tix_A 12 GGGSGGGSGGSAWSHPQF 29 (207)
T ss_dssp ------------------
T ss_pred cCCCCCCCCCccccCccc
Confidence 455566666666665433
No 147
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.81 E-value=2.9e+02 Score=22.33 Aligned_cols=89 Identities=15% Similarity=0.189 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcccc------ccccCCCCHHHHHHHHHHHHHhCChH
Q 046581 174 GQWTDEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRP------DIKKDSWSEEEERILVEAHARIGNRW 247 (470)
Q Consensus 174 G~WT~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p------~ikk~~WT~EED~~Ll~lv~~~G~kW 247 (470)
...|.++-..++.++. -| ..-..||+.+ |.+...|+. |...... .-.....+++++..|+.+...-.-.-
T Consensus 5 ~~~s~~~r~~i~~~~~-~G-~s~~~ia~~l-gis~~Tv~r-~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LN-VSLHEMSRKI-SRSRHCIRV-YLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHH-TCCHHHHHH-HHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred ccCCHHHHHHHHHHHH-cC-CCHHHHHHHH-CcCHHHHHH-HHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 3578888888888774 56 4789999999 677766654 3322211 11223578888888877733222334
Q ss_pred HHHhhhCCC--CCHHHHHHHHH
Q 046581 248 AEIAKHIPG--RTENSIKNHWN 267 (470)
Q Consensus 248 s~IAk~Lpg--RT~~q~KnRw~ 267 (470)
.+|+..| | -+...|....+
T Consensus 81 ~~i~~~l-g~~~s~~tV~r~l~ 101 (141)
T 1u78_A 81 RDIRNEL-QLSASKRTILNVIK 101 (141)
T ss_dssp HHHHHHT-TCCSCHHHHHHHHH
T ss_pred HHHHHHH-CCCccHHHHHHHHH
Confidence 6788888 4 56666655444
No 148
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=23.69 E-value=56 Score=27.95 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCC-------chHHHHHHHhcCCC----hhhhhhhhhhcccc
Q 046581 182 RKLIKLVKQYGV-------RKWAQISERMAGRA----GKQCRERWHNHLRP 221 (470)
Q Consensus 182 ~~Ll~lV~~yG~-------~~Ws~IA~~lpgRT----~~Qcr~Rw~~~L~p 221 (470)
-+|..+|.+.|- +.|.+||..|.--+ +.+++..|.++|-+
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 467888887752 26999999995322 45778888877754
No 149
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.56 E-value=1.1e+02 Score=25.84 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHHhhhhc
Q 046581 231 EEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKRRQNSR 276 (470)
Q Consensus 231 EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~k 276 (470)
+-|..|+.++...+ -.+.+||+.+ |-+...|..|.+.+.+...-+
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 44566777777766 4699999999 889999999999998776543
No 150
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=23.44 E-value=1.1e+02 Score=22.53 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHH
Q 046581 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHW 266 (470)
Q Consensus 231 EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw 266 (470)
-|...|.+++..+++++++.|+.| |=+...+..+-
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rkl 53 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRKI 53 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 466788999999999999999988 55655554443
No 151
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.42 E-value=57 Score=27.84 Aligned_cols=40 Identities=35% Similarity=0.576 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCC-------chHHHHHHHhcCCC----hhhhhhhhhhcccc
Q 046581 182 RKLIKLVKQYGV-------RKWAQISERMAGRA----GKQCRERWHNHLRP 221 (470)
Q Consensus 182 ~~Ll~lV~~yG~-------~~Ws~IA~~lpgRT----~~Qcr~Rw~~~L~p 221 (470)
-+|..+|.+.|- +.|..|+..|+--. +..++..|.++|-|
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 468888888762 36999999995322 35677777777654
No 152
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=23.23 E-value=99 Score=26.40 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCC--------hHHHHhhhC--CCC---CHHHHHHHHHHhHHh
Q 046581 234 RILVEAHARIGN--------RWAEIAKHI--PGR---TENSIKNHWNATKRR 272 (470)
Q Consensus 234 ~~Ll~lv~~~G~--------kWs~IAk~L--pgR---T~~q~KnRw~~llrr 272 (470)
-.|..+|...|+ .|.+||..| |.. ....+|..|..++-.
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 457788888885 699999988 322 257889999887665
No 153
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.12 E-value=91 Score=25.79 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=27.1
Q ss_pred HHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 240 HARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 240 v~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
....|-...+||..| |-+...|+++....+++-
T Consensus 120 ~~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 120 YLIRGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp HHTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 455677899999999 899999999988766553
No 154
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=22.94 E-value=51 Score=28.33 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 231 EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
+.+..++.+....|-...+||..| |-+...|+++....+++-
T Consensus 138 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 138 EAQRALIERAFFGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HHHHHHHHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 344556666666788899999999 899999999998776653
No 155
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=22.82 E-value=1.1e+02 Score=25.23 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHh
Q 046581 232 EERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRR 272 (470)
Q Consensus 232 ED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr 272 (470)
.+..++.++...|-...+||..+ |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34455666666788899999999 89999999988766554
No 156
>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage display, selectively infective phages, viral protein; HET: TRO; 1.46A {Enterobacteria phage M13} SCOP: b.37.1.1 b.37.1.1 PDB: 2g3p_A 3dgs_A 3knq_A 1fgp_A
Probab=22.75 E-value=18 Score=33.40 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=5.1
Q ss_pred CCchHHHHHHHHH
Q 046581 110 TTTLEPTSFVDGF 122 (470)
Q Consensus 110 WT~EED~~Ll~~V 122 (470)
+|+-....+.+..
T Consensus 168 ~~~~~~~~~~~~~ 180 (217)
T 1g3p_A 168 YTPVSSKAMYDAY 180 (217)
T ss_dssp EEECCCHHHHHHH
T ss_pred ecccchhhhhhhh
Confidence 3443333443433
No 157
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=22.71 E-value=47 Score=26.89 Aligned_cols=37 Identities=19% Similarity=0.423 Sum_probs=25.4
Q ss_pred HHHHHHHHhCC--------hHHHHhhhCC--C-C-CHHHHHHHHHHhHH
Q 046581 235 ILVEAHARIGN--------RWAEIAKHIP--G-R-TENSIKNHWNATKR 271 (470)
Q Consensus 235 ~Ll~lv~~~G~--------kWs~IAk~Lp--g-R-T~~q~KnRw~~llr 271 (470)
.|..+|.+.|+ .|.+|+..|. . - ....+|..|..++-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 47777777764 6999999872 1 1 25677888876554
No 158
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=22.70 E-value=89 Score=26.84 Aligned_cols=38 Identities=11% Similarity=0.316 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC--------hHHHHhhhC--CCC---CHHHHHHHHHHhHHh
Q 046581 235 ILVEAHARIGN--------RWAEIAKHI--PGR---TENSIKNHWNATKRR 272 (470)
Q Consensus 235 ~Ll~lv~~~G~--------kWs~IAk~L--pgR---T~~q~KnRw~~llrr 272 (470)
.|..+|.+.|+ .|.+||..| |.- ....+|..|..++-.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 57788888886 699999988 322 246789999876654
No 159
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.52 E-value=93 Score=27.55 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhC-ChHHHHhhhCCCCCHHHHHHHHHHhHHhhhh
Q 046581 230 EEEERILVEAHARIG-NRWAEIAKHIPGRTENSIKNHWNATKRRQNS 275 (470)
Q Consensus 230 ~EED~~Ll~lv~~~G-~kWs~IAk~LpgRT~~q~KnRw~~llrr~~~ 275 (470)
.+-|..|+.++.+.+ -.|.+||+.+ |-+...|..|.+.|.+...-
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 345667788877766 4699999999 88999999999999876554
No 160
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.15 E-value=81 Score=27.96 Aligned_cols=43 Identities=30% Similarity=0.380 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhcCCChhhhhhhhhhcccc
Q 046581 178 DEEDRKLIKLVKQYGVRKWAQISERMAGRAGKQCRERWHNHLRP 221 (470)
Q Consensus 178 ~EED~~Ll~lV~~yG~~~Ws~IA~~lpgRT~~Qcr~Rw~~~L~p 221 (470)
.+-|.+|+.+..+.+...+..||+.+ |-+...|+.|...+...
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRES 68 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 35577888888888878999999999 78999999998775443
No 161
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=22.08 E-value=1.1e+02 Score=27.10 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhh
Q 046581 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQ 273 (470)
Q Consensus 231 EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~ 273 (470)
+.+..++.++-..|-...+||..| |-+...|+.+....+++-
T Consensus 190 ~~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 190 EREKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 344445555555677899999999 999999999887765543
No 162
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.77 E-value=1e+02 Score=27.12 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCC--------hHHHHhhhC--CCC---CHHHHHHHHHHhHHh
Q 046581 234 RILVEAHARIGN--------RWAEIAKHI--PGR---TENSIKNHWNATKRR 272 (470)
Q Consensus 234 ~~Ll~lv~~~G~--------kWs~IAk~L--pgR---T~~q~KnRw~~llrr 272 (470)
..|..+|.+.|+ .|.+|+..| |.. ....+|..|..++-.
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 357778888875 699999988 332 256889999887654
No 163
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=21.60 E-value=51 Score=20.75 Aligned_cols=18 Identities=28% Similarity=0.765 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCcchhhhhcccCCc
Q 046581 36 PHHQVYRPSPPLTAIDRFLWGQNN 59 (470)
Q Consensus 36 ~~~~~~~~~p~~~~~d~f~~g~~~ 59 (470)
+||.||.-+||+ ++|.++
T Consensus 5 ahhnmfsvpppp------i~gr~n 22 (26)
T 2bn5_B 5 AHHNMFSVPPPP------ILGRGX 22 (26)
T ss_dssp CCCCCCSCCCCS------CCCCC-
T ss_pred ccCceecCCCCC------cccCCc
Confidence 578999766666 456554
No 164
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=21.05 E-value=1.3e+02 Score=23.91 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHH
Q 046581 231 EEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHW 266 (470)
Q Consensus 231 EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw 266 (470)
-|...|.+++..++++.++.|+.| |=+...+..|-
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 467788999999999999999999 77766665443
No 165
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.87 E-value=2.1e+02 Score=23.15 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=36.5
Q ss_pred cCCCCHHHHHHHHHHHHHhCChHHHHhhhCCCCCHHHHHHHHHHhHHhhh
Q 046581 225 KDSWSEEEERILVEAHARIGNRWAEIAKHIPGRTENSIKNHWNATKRRQN 274 (470)
Q Consensus 225 k~~WT~EED~~Ll~lv~~~G~kWs~IAk~LpgRT~~q~KnRw~~llrr~~ 274 (470)
....|+.|-++|.. + ..|-.-.+||..| +-+...|+.+...++++-.
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHC
Confidence 35678877776644 3 3688889999999 8899999999988877643
No 166
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=20.43 E-value=69 Score=28.11 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHhCCch-----HHHHHHHhcCCChhhhhhhhhhccccccccCCCCHHHHHHHHH
Q 046581 176 WTDEEDRKLIKLVKQYGVRK-----WAQISERMAGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVE 238 (470)
Q Consensus 176 WT~EED~~Ll~lV~~yG~~~-----Ws~IA~~lpgRT~~Qcr~Rw~~~L~p~ikk~~WT~EED~~Ll~ 238 (470)
.+.+.-..|+.+..-..... =..||..+.|+|+.+||..|. |. ..+|+||++.|.+
T Consensus 94 id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~------I~-~d~t~eEe~~ir~ 154 (159)
T 2ast_A 94 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN------IK-NDFTEEEEAQVRK 154 (159)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTT------CC-CCSCTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 56777777777777776432 246888899999999999874 22 2499999987653
No 167
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=20.28 E-value=2.8e+02 Score=23.45 Aligned_cols=77 Identities=12% Similarity=-0.094 Sum_probs=43.6
Q ss_pred CCCchHHHHHHHHHHHcCCCCcccccChhhcccccCCCcccccCcccccccccccccc------CCCCC----CCCCCCH
Q 046581 109 TTTTLEPTSFVDGFFADGTANDQSLINWSYDIIYKEGSKSACNNNKGMIGHKRSNKKG------ASVAL----IKGQWTD 178 (470)
Q Consensus 109 ~WT~EED~~Ll~~V~~~G~~~~~~~~nW~~IA~~~grs~~~cR~~~q~~~~~rRw~~~------l~p~l----kKG~WT~ 178 (470)
..|.++-..++.++ ..|. ...+||..+|.+....+ +|.+. +.+.. ++...++
T Consensus 25 ~~s~e~r~~ii~l~-~~G~-------s~~~IA~~lgis~~TV~----------rwl~r~~~~G~~~~~~r~gr~~~~~~~ 86 (159)
T 2k27_A 25 PLPEVVRQRIVDLA-HQGV-------RPCDISRQLRVSHGCVS----------KILGRYYETGSIRPGVIGGSKPKVATP 86 (159)
T ss_dssp SSCHHHHHHHHHHH-HHTC-------CHHHHHHHHTCCSHHHH----------HHHCCSSTTSCCCCCCCCCCCCCCCCT
T ss_pred CCCHHHHHHHHHHH-HcCC-------CHHHHHHHHCcCHHHHH----------HHHHHHHhcCCccCCCCCCCCCCCCCH
Confidence 56666655666665 3453 37888887775443332 22211 11211 1345788
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHh
Q 046581 179 EEDRKLIKLVKQYGVRKWAQISERM 203 (470)
Q Consensus 179 EED~~Ll~lV~~yG~~~Ws~IA~~l 203 (470)
++.+.|++++.+...-.-..|+..+
T Consensus 87 ~~~~~I~~~~~~~~~~s~~~i~~~l 111 (159)
T 2k27_A 87 KVVEKIGDYKRQNPTMFAWEIRDRL 111 (159)
T ss_dssp THHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCccchHHHHHHHH
Confidence 8888888888766433345666655
Done!